Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81300.t1 | XP_003617849.2 | 97.8 | 277 | 6 | 0 | 1 | 277 | 43 | 319 | 2.50E-154 | 554.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81300.t1 | Q8LDU4 | 54.4 | 272 | 119 | 2 | 9 | 277 | 49 | 318 | 9.7e-83 | 308.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81300.t1 | G7KEI7 | 97.8 | 277 | 6 | 0 | 1 | 277 | 43 | 319 | 1.8e-154 | 554.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene81300 | 0.807556 | 4.77E-50 | -1.69E-46 |
| MS.gene049285 | MS.gene81300 | 0.800421 | 1.45E-48 | -1.69E-46 |
| MS.gene049320 | MS.gene81300 | 0.81549 | 9.00E-52 | -1.69E-46 |
| MS.gene050163 | MS.gene81300 | 0.80954 | 1.80E-50 | -1.69E-46 |
| MS.gene050165 | MS.gene81300 | 0.8134 | 2.61E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene81300 | 0.820613 | 6.25E-53 | -1.69E-46 |
| MS.gene051810 | MS.gene81300 | 0.844263 | 8.43E-59 | -1.69E-46 |
| MS.gene051858 | MS.gene81300 | 0.804508 | 2.09E-49 | -1.69E-46 |
| MS.gene052164 | MS.gene81300 | 0.80263 | 5.12E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene81300 | 0.817099 | 3.93E-52 | -1.69E-46 |
| MS.gene052872 | MS.gene81300 | 0.814809 | 1.27E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene81300 | 0.803171 | 3.96E-49 | -1.69E-46 |
| MS.gene054600 | MS.gene81300 | 0.802178 | 6.35E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene81300 | 0.81708 | 3.97E-52 | -1.69E-46 |
| MS.gene05494 | MS.gene81300 | 0.80072 | 1.26E-48 | -1.69E-46 |
| MS.gene055502 | MS.gene81300 | 0.806419 | 8.30E-50 | -1.69E-46 |
| MS.gene055577 | MS.gene81300 | 0.82762 | 1.41E-54 | -1.69E-46 |
| MS.gene05589 | MS.gene81300 | 0.803983 | 2.69E-49 | -1.69E-46 |
| MS.gene055941 | MS.gene81300 | 0.811666 | 6.25E-51 | -1.69E-46 |
| MS.gene056283 | MS.gene81300 | 0.828537 | 8.51E-55 | -1.69E-46 |
| MS.gene056504 | MS.gene81300 | 0.813683 | 2.26E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene81300 | 0.82305 | 1.71E-53 | -1.69E-46 |
| MS.gene056947 | MS.gene81300 | 0.801405 | 9.15E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene81300 | 0.812829 | 3.48E-51 | -1.69E-46 |
| MS.gene057926 | MS.gene81300 | 0.808881 | 2.49E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene81300 | 0.80488 | 1.75E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene81300 | -0.802149 | 6.43E-49 | -1.69E-46 |
| MS.gene058723 | MS.gene81300 | 0.827414 | 1.59E-54 | -1.69E-46 |
| MS.gene05913 | MS.gene81300 | 0.804386 | 2.21E-49 | -1.69E-46 |
| MS.gene059367 | MS.gene81300 | 0.808099 | 3.66E-50 | -1.69E-46 |
| MS.gene059718 | MS.gene81300 | 0.802958 | 4.38E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene81300 | 0.817718 | 2.85E-52 | -1.69E-46 |
| MS.gene060703 | MS.gene81300 | 0.825638 | 4.20E-54 | -1.69E-46 |
| MS.gene060762 | MS.gene81300 | 0.822302 | 2.55E-53 | -1.69E-46 |
| MS.gene060804 | MS.gene81300 | 0.800825 | 1.20E-48 | -1.69E-46 |
| MS.gene060982 | MS.gene81300 | 0.818345 | 2.06E-52 | -1.69E-46 |
| MS.gene061041 | MS.gene81300 | 0.827837 | 1.26E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81300.t1 | MTR_5g096150 | 97.834 | 277 | 6 | 0 | 1 | 277 | 43 | 319 | 0.0 | 567 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81300.t1 | AT4G37000 | 53.214 | 280 | 126 | 2 | 1 | 277 | 41 | 318 | 2.32e-101 | 299 |
Find 50 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTACGACCTTGCTTCTTC+TGG | 0.137652 | 5.2:+80725986 | None:intergenic |
| ATCAGCTCGAACACGAAATT+TGG | 0.213505 | 5.2:+80724715 | None:intergenic |
| CTCGAAAAGACCTTGTTCTT+TGG | 0.238806 | 5.2:-80724648 | MS.gene81300:CDS |
| CAAAGCAAGTGTTGGGGATA+TGG | 0.247429 | 5.2:-80724414 | MS.gene81300:CDS |
| CCCAACACTTGCTTTGAAAT+CGG | 0.292400 | 5.2:+80724421 | None:intergenic |
| AGAACAAGAATTAGCATTGT+TGG | 0.348949 | 5.2:+80724682 | None:intergenic |
| TCAAGCTTTCCAAGGTTGTT+TGG | 0.358482 | 5.2:-80724283 | MS.gene81300:CDS |
| AACAGTAAAATACTCCTTGA+TGG | 0.363131 | 5.2:+80724231 | None:intergenic |
| GCTACGACCTTGCTTCTTCT+GGG | 0.370091 | 5.2:+80725987 | None:intergenic |
| AAGACTATTGAGGTTGATCT+TGG | 0.379733 | 5.2:-80724307 | MS.gene81300:CDS |
| AGAAGCTGCAAAACAGATAT+TGG | 0.387915 | 5.2:-80724257 | MS.gene81300:CDS |
| CTCTTATAGTATTGAACATC+AGG | 0.390571 | 5.2:+80725853 | None:intergenic |
| TCCTACTTCTCTCTCGGAAC+AGG | 0.405515 | 5.2:+80724378 | None:intergenic |
| CCGATTTCAAAGCAAGTGTT+GGG | 0.413297 | 5.2:-80724421 | MS.gene81300:CDS |
| CCAACACTTGCTTTGAAATC+GGG | 0.426823 | 5.2:+80724422 | None:intergenic |
| TTAGCATTGTTGGACTGCTT+CGG | 0.427662 | 5.2:+80724692 | None:intergenic |
| CCCGATTTCAAAGCAAGTGT+TGG | 0.432798 | 5.2:-80724422 | MS.gene81300:CDS |
| CGATACACATAGGCAGGCTT+TGG | 0.432959 | 5.2:-80724587 | MS.gene81300:CDS |
| GTGACATAAGGTTGAACCTC+TGG | 0.461727 | 5.2:+80724556 | None:intergenic |
| ATCATTTGAACTGTTAAGAT+AGG | 0.468826 | 5.2:+80724741 | None:intergenic |
| CAATACTATAAGAGCAAGAA+TGG | 0.480003 | 5.2:-80725844 | MS.gene81300:CDS |
| ATCAAGCATGAGATTCTTGT+GGG | 0.484852 | 5.2:+80725933 | None:intergenic |
| TTCCTCTCCTACTTCTCTCT+CGG | 0.487400 | 5.2:+80724372 | None:intergenic |
| ACAGATATTGGAAGCCATCA+AGG | 0.487475 | 5.2:-80724245 | MS.gene81300:CDS |
| ATCTTGGTTCAAGCTTTCCA+AGG | 0.509846 | 5.2:-80724291 | MS.gene81300:CDS |
| GTGCATGCTGAGCTACCAAC+AGG | 0.516588 | 5.2:-80724793 | MS.gene81300:CDS |
| TTGTGGGGTGCTGAAACAAA+TGG | 0.519655 | 5.2:+80725949 | None:intergenic |
| ATGAAGGAGAGCGAATAGAC+AGG | 0.532992 | 5.2:-80724465 | MS.gene81300:CDS |
| CATTAGAAACAAGACTATTG+AGG | 0.540436 | 5.2:-80724317 | MS.gene81300:CDS |
| ACAGGGGAATCAGTGTTGCT+TGG | 0.543335 | 5.2:+80725793 | None:intergenic |
| TAAACTCGATACACATAGGC+AGG | 0.546034 | 5.2:-80724593 | MS.gene81300:CDS |
| ATTCAGACAGAAAATGATGA+AGG | 0.546561 | 5.2:-80724481 | MS.gene81300:CDS |
| AAAAGCGAAGAAGTGACATA+AGG | 0.548015 | 5.2:+80724544 | None:intergenic |
| GCTTCTGGACCAAACAACCT+TGG | 0.551283 | 5.2:+80724274 | None:intergenic |
| GCAAGTGTTGGGGATATGGT+TGG | 0.554687 | 5.2:-80724410 | MS.gene81300:CDS |
| ATGCGAACAAATATAGCGGT+TGG | 0.559048 | 5.2:+80724502 | None:intergenic |
| ACATCAGGTGGAAGTGAACA+AGG | 0.566315 | 5.2:+80725868 | None:intergenic |
| ATATCTAATGATCCTCCTGT+TGG | 0.577783 | 5.2:+80724778 | None:intergenic |
| GATCAAGCATGAGATTCTTG+TGG | 0.577920 | 5.2:+80725932 | None:intergenic |
| GCCTGTTCCGAGAGAGAAGT+AGG | 0.581979 | 5.2:-80724379 | MS.gene81300:CDS |
| GGTAATCTGGCCAAAGAACA+AGG | 0.591389 | 5.2:+80724638 | None:intergenic |
| TTCCGAGAGAGAAGTAGGAG+AGG | 0.601529 | 5.2:-80724374 | MS.gene81300:CDS |
| TTATAGTATTGAACATCAGG+TGG | 0.606078 | 5.2:+80725856 | None:intergenic |
| ATGGATACCCAGAAGAAGCA+AGG | 0.631772 | 5.2:-80725994 | MS.gene81300:CDS |
| CGATTTCAAAGCAAGTGTTG+GGG | 0.632172 | 5.2:-80724420 | MS.gene81300:CDS |
| ACACTAAACTCGATACACAT+AGG | 0.635620 | 5.2:-80724597 | MS.gene81300:CDS |
| CATGCTGAGCTACCAACAGG+AGG | 0.671949 | 5.2:-80724790 | MS.gene81300:CDS |
| CTGAATGCGAACAAATATAG+CGG | 0.692980 | 5.2:+80724498 | None:intergenic |
| TCAAGCATGAGATTCTTGTG+GGG | 0.732179 | 5.2:+80725934 | None:intergenic |
| CGGTTGGAGATGCAACACTG+CGG | 0.782235 | 5.2:+80724518 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTGTTATGTTATTTTATT+AGG | - | chr5.2:80724534-80724553 | MS.gene81300:CDS | 10.0% |
| !! | ATTATGTTTCTTCAACATAA+GGG | + | chr5.2:80725057-80725076 | None:intergenic | 20.0% |
| !! | TATACTCTAACATGAAAATA+TGG | + | chr5.2:80724486-80724505 | None:intergenic | 20.0% |
| !! | TCATATAACAAAACAATCAA+TGG | + | chr5.2:80725270-80725289 | None:intergenic | 20.0% |
| !! | TTCATGTTAGAGTATATATT+TGG | - | chr5.2:80724490-80724509 | MS.gene81300:CDS | 20.0% |
| !! | TTTAAAAGCAAAAAGTAGAA+AGG | + | chr5.2:80724460-80724479 | None:intergenic | 20.0% |
| !!! | TAAAAAGTTTTAAGGTAATC+TGG | + | chr5.2:80725600-80725619 | None:intergenic | 20.0% |
| ! | AAAAGTAGAAAGGAAATTAC+AGG | + | chr5.2:80724450-80724469 | None:intergenic | 25.0% |
| ! | AAAGTAGAAAGGAAATTACA+GGG | + | chr5.2:80724449-80724468 | None:intergenic | 25.0% |
| ! | ATCATTTGAACTGTTAAGAT+AGG | + | chr5.2:80725484-80725503 | None:intergenic | 25.0% |
| ! | ATGCAAATAACCAAATTAAG+TGG | + | chr5.2:80724706-80724725 | None:intergenic | 25.0% |
| ! | CATTATGTTTCTTCAACATA+AGG | + | chr5.2:80725058-80725077 | None:intergenic | 25.0% |
| ! | CTATCTAACTATCTACAAAT+AGG | - | chr5.2:80724981-80725000 | MS.gene81300:intron | 25.0% |
| ! | TATATATTTGGTTGAGAACT+AGG | - | chr5.2:80724502-80724521 | MS.gene81300:CDS | 25.0% |
| ! | TTCCTTAATTGTGATTGTTT+GGG | - | chr5.2:80724898-80724917 | MS.gene81300:intron | 25.0% |
| ! | TTTAGAGAACTGAATCAAAT+TGG | - | chr5.2:80724790-80724809 | MS.gene81300:CDS | 25.0% |
| !! | TCTCAGATAGATTTTGTAAT+GGG | - | chr5.2:80725399-80725418 | MS.gene81300:intron | 25.0% |
| !! | TTACCTTAAAACTTTTTACG+AGG | - | chr5.2:80725602-80725621 | MS.gene81300:intron | 25.0% |
| !!! | TATTTTTCCATTAGTTCTCT+AGG | - | chr5.2:80725197-80725216 | MS.gene81300:intron | 25.0% |
| AACAGTAAAATACTCCTTGA+TGG | + | chr5.2:80725994-80726013 | None:intergenic | 30.0% | |
| AAGTAGAAAGGAAATTACAG+GGG | + | chr5.2:80724448-80724467 | None:intergenic | 30.0% | |
| AGAACAAGAATTAGCATTGT+TGG | + | chr5.2:80725543-80725562 | None:intergenic | 30.0% | |
| ATTCAGACAGAAAATGATGA+AGG | - | chr5.2:80725741-80725760 | MS.gene81300:intron | 30.0% | |
| CAATACTATAAGAGCAAGAA+TGG | - | chr5.2:80724378-80724397 | MS.gene81300:CDS | 30.0% | |
| CATTAGAAACAAGACTATTG+AGG | - | chr5.2:80725905-80725924 | MS.gene81300:CDS | 30.0% | |
| GAAGAAACATAATGTTCATG+AGG | - | chr5.2:80725064-80725083 | MS.gene81300:intron | 30.0% | |
| GCTTATCTGATAAAAAGAGA+TGG | - | chr5.2:80725879-80725898 | MS.gene81300:CDS | 30.0% | |
| GTGATTTCAACCACTTAATT+TGG | - | chr5.2:80724693-80724712 | MS.gene81300:CDS | 30.0% | |
| GTTCCTTAATTGTGATTGTT+TGG | - | chr5.2:80724897-80724916 | MS.gene81300:intron | 30.0% | |
| TACCCAAACAATCACAATTA+AGG | + | chr5.2:80724903-80724922 | None:intergenic | 30.0% | |
| TCAAATAAGCTAATCCAAAC+AGG | + | chr5.2:80725090-80725109 | None:intergenic | 30.0% | |
| ! | CTCTTATAGTATTGAACATC+AGG | + | chr5.2:80724372-80724391 | None:intergenic | 30.0% |
| ! | GTCTCAGATAGATTTTGTAA+TGG | - | chr5.2:80725398-80725417 | MS.gene81300:intron | 30.0% |
| ! | TGTCCTCGTAAAAAGTTTTA+AGG | + | chr5.2:80725608-80725627 | None:intergenic | 30.0% |
| ! | TTATAGTATTGAACATCAGG+TGG | + | chr5.2:80724369-80724388 | None:intergenic | 30.0% |
| AAAAGCGAAGAAGTGACATA+AGG | + | chr5.2:80725681-80725700 | None:intergenic | 35.0% | |
| AAGCTATCCTAGAGAACTAA+TGG | + | chr5.2:80725207-80725226 | None:intergenic | 35.0% | |
| ACACTAAACTCGATACACAT+AGG | - | chr5.2:80725625-80725644 | MS.gene81300:intron | 35.0% | |
| AGAAGCTGCAAAACAGATAT+TGG | - | chr5.2:80725965-80725984 | MS.gene81300:CDS | 35.0% | |
| ATATCTAATGATCCTCCTGT+TGG | + | chr5.2:80725447-80725466 | None:intergenic | 35.0% | |
| ATCAAGCATGAGATTCTTGT+GGG | + | chr5.2:80724292-80724311 | None:intergenic | 35.0% | |
| CAAGTTGTTTATCCAACACA+TGG | - | chr5.2:80725317-80725336 | MS.gene81300:intron | 35.0% | |
| CATGTGTTGGATAAACAACT+TGG | + | chr5.2:80725319-80725338 | None:intergenic | 35.0% | |
| CTGAATGCGAACAAATATAG+CGG | + | chr5.2:80725727-80725746 | None:intergenic | 35.0% | |
| GCTTATTTGAGCTTACATAC+TGG | - | chr5.2:80725100-80725119 | MS.gene81300:intron | 35.0% | |
| TTACTAACTACTCACCTTAG+AGG | + | chr5.2:80724653-80724672 | None:intergenic | 35.0% | |
| ! | AAGACTATTGAGGTTGATCT+TGG | - | chr5.2:80725915-80725934 | MS.gene81300:CDS | 35.0% |
| ! | AATATCTGTTTTGCAGCTTC+TGG | + | chr5.2:80725966-80725985 | None:intergenic | 35.0% |
| ! | TAGAGTGTCTAAAGTGAGTT+TGG | + | chr5.2:80724616-80724635 | None:intergenic | 35.0% |
| !! | AGATTTTGTAATGGGAAGCT+GGG | - | chr5.2:80725407-80725426 | MS.gene81300:intron | 35.0% |
| !! | TAGATTTTGTAATGGGAAGC+TGG | - | chr5.2:80725406-80725425 | MS.gene81300:intron | 35.0% |
| ACAGATATTGGAAGCCATCA+AGG | - | chr5.2:80725977-80725996 | MS.gene81300:CDS | 40.0% | |
| ACCATAACTAGACCATGTGT+TGG | + | chr5.2:80725332-80725351 | None:intergenic | 40.0% | |
| ATCAGCTCGAACACGAAATT+TGG | + | chr5.2:80725510-80725529 | None:intergenic | 40.0% | |
| ATCTACCAACCAGTGAATCA+AGG | + | chr5.2:80724871-80724890 | None:intergenic | 40.0% | |
| ATCTTGGTTCAAGCTTTCCA+AGG | - | chr5.2:80725931-80725950 | MS.gene81300:CDS | 40.0% | |
| ATGCGAACAAATATAGCGGT+TGG | + | chr5.2:80725723-80725742 | None:intergenic | 40.0% | |
| CCGATTTCAAAGCAAGTGTT+GGG | - | chr5.2:80725801-80725820 | MS.gene81300:CDS | 40.0% | |
| CTCGAAAAGACCTTGTTCTT+TGG | - | chr5.2:80725574-80725593 | MS.gene81300:intron | 40.0% | |
| GATCAAGCATGAGATTCTTG+TGG | + | chr5.2:80724293-80724312 | None:intergenic | 40.0% | |
| TAAACTCGATACACATAGGC+AGG | - | chr5.2:80725629-80725648 | MS.gene81300:intron | 40.0% | |
| TAATGTTCATGAGGCCTGTT+TGG | - | chr5.2:80725073-80725092 | MS.gene81300:intron | 40.0% | |
| TCAACCATGTTTCTCCTCTA+AGG | - | chr5.2:80724636-80724655 | MS.gene81300:CDS | 40.0% | |
| TCAAGCATGAGATTCTTGTG+GGG | + | chr5.2:80724291-80724310 | None:intergenic | 40.0% | |
| TCAAGCTTTCCAAGGTTGTT+TGG | - | chr5.2:80725939-80725958 | MS.gene81300:CDS | 40.0% | |
| TCCAACACATGGTCTAGTTA+TGG | - | chr5.2:80725328-80725347 | MS.gene81300:intron | 40.0% | |
| TTAGCATTGTTGGACTGCTT+CGG | + | chr5.2:80725533-80725552 | None:intergenic | 40.0% | |
| ! | CAAAGAACAAGGTCTTTTCG+AGG | + | chr5.2:80725576-80725595 | None:intergenic | 40.0% |
| ! | CGATTTCAAAGCAAGTGTTG+GGG | - | chr5.2:80725802-80725821 | MS.gene81300:CDS | 40.0% |
| ! | GCAAGGTCGTAGCAAATTTT+TGG | - | chr5.2:80724245-80724264 | MS.gene81300:CDS | 40.0% |
| !! | CCAACACTTGCTTTGAAATC+GGG | + | chr5.2:80725803-80725822 | None:intergenic | 40.0% |
| !! | CCCAACACTTGCTTTGAAAT+CGG | + | chr5.2:80725804-80725823 | None:intergenic | 40.0% |
| !! | GGCTTTGGAAAAAATTCCAG+AGG | - | chr5.2:80725650-80725669 | MS.gene81300:intron | 40.0% |
| ACATCAGGTGGAAGTGAACA+AGG | + | chr5.2:80724357-80724376 | None:intergenic | 45.0% | |
| ATGAAGGAGAGCGAATAGAC+AGG | - | chr5.2:80725757-80725776 | MS.gene81300:intron | 45.0% | |
| ATGGATACCCAGAAGAAGCA+AGG | - | chr5.2:80724228-80724247 | MS.gene81300:CDS | 45.0% | |
| CAACCAGTGAATCAAGGCTT+AGG | + | chr5.2:80724865-80724884 | None:intergenic | 45.0% | |
| CCCGATTTCAAAGCAAGTGT+TGG | - | chr5.2:80725800-80725819 | MS.gene81300:CDS | 45.0% | |
| CTAAGCCTTGATTCACTGGT+TGG | - | chr5.2:80724863-80724882 | MS.gene81300:intron | 45.0% | |
| CTCACCTTAGAGGAGAAACA+TGG | + | chr5.2:80724643-80724662 | None:intergenic | 45.0% | |
| GGTAATCTGGCCAAAGAACA+AGG | + | chr5.2:80725587-80725606 | None:intergenic | 45.0% | |
| GTGACATAAGGTTGAACCTC+TGG | + | chr5.2:80725669-80725688 | None:intergenic | 45.0% | |
| TAGCCTAAGCCTTGATTCAC+TGG | - | chr5.2:80724859-80724878 | MS.gene81300:intron | 45.0% | |
| TTCCTCTCCTACTTCTCTCT+CGG | + | chr5.2:80725853-80725872 | None:intergenic | 45.0% | |
| !! | AGAACAAGGTCTTTTCGAGG+TGG | + | chr5.2:80725573-80725592 | None:intergenic | 45.0% |
| !! | CAAAGCAAGTGTTGGGGATA+TGG | - | chr5.2:80725808-80725827 | MS.gene81300:CDS | 45.0% |
| !! | TTGTGGGGTGCTGAAACAAA+TGG | + | chr5.2:80724276-80724295 | None:intergenic | 45.0% |
| !!! | ATTATTTTAATTACTTATTA+AGG | - | chr5.2:80724943-80724962 | MS.gene81300:intron | 5.0% |
| CGATACACATAGGCAGGCTT+TGG | - | chr5.2:80725635-80725654 | MS.gene81300:intron | 50.0% | |
| GCTACGACCTTGCTTCTTCT+GGG | + | chr5.2:80724238-80724257 | None:intergenic | 50.0% | |
| GCTTCTGGACCAAACAACCT+TGG | + | chr5.2:80725951-80725970 | None:intergenic | 50.0% | |
| TCCTACTTCTCTCTCGGAAC+AGG | + | chr5.2:80725847-80725866 | None:intergenic | 50.0% | |
| TGCTACGACCTTGCTTCTTC+TGG | + | chr5.2:80724239-80724258 | None:intergenic | 50.0% | |
| TTCCGAGAGAGAAGTAGGAG+AGG | - | chr5.2:80725848-80725867 | MS.gene81300:CDS | 50.0% | |
| ! | ACAGGGGAATCAGTGTTGCT+TGG | + | chr5.2:80724432-80724451 | None:intergenic | 50.0% |
| !! | GCAAGTGTTGGGGATATGGT+TGG | - | chr5.2:80725812-80725831 | MS.gene81300:CDS | 50.0% |
| CATGCTGAGCTACCAACAGG+AGG | - | chr5.2:80725432-80725451 | MS.gene81300:intron | 55.0% | |
| CGGTTGGAGATGCAACACTG+CGG | + | chr5.2:80725707-80725726 | None:intergenic | 55.0% | |
| GCCTGTTCCGAGAGAGAAGT+AGG | - | chr5.2:80725843-80725862 | MS.gene81300:CDS | 55.0% | |
| GTGCATGCTGAGCTACCAAC+AGG | - | chr5.2:80725429-80725448 | MS.gene81300:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 80724228 | 80726016 | 80724228 | ID=MS.gene81300 |
| chr5.2 | mRNA | 80724228 | 80726016 | 80724228 | ID=MS.gene81300.t1;Parent=MS.gene81300 |
| chr5.2 | exon | 80725795 | 80726016 | 80725795 | ID=MS.gene81300.t1.exon1;Parent=MS.gene81300.t1 |
| chr5.2 | CDS | 80725795 | 80726016 | 80725795 | ID=cds.MS.gene81300.t1;Parent=MS.gene81300.t1 |
| chr5.2 | exon | 80724228 | 80724839 | 80724228 | ID=MS.gene81300.t1.exon2;Parent=MS.gene81300.t1 |
| chr5.2 | CDS | 80724228 | 80724839 | 80724228 | ID=cds.MS.gene81300.t1;Parent=MS.gene81300.t1 |
| Gene Sequence |
| Protein sequence |
