Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81406.t1 | XP_024640921.1 | 92.1 | 417 | 32 | 1 | 1 | 416 | 1 | 417 | 1.20E-197 | 699.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81406.t1 | G7K4C9 | 92.1 | 417 | 32 | 1 | 1 | 416 | 1 | 417 | 8.8e-198 | 699.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049873 | MS.gene81406 | 0.814746 | 1.32E-51 | -1.69E-46 |
| MS.gene050312 | MS.gene81406 | 0.801546 | 8.56E-49 | -1.69E-46 |
| MS.gene051368 | MS.gene81406 | 0.807588 | 4.70E-50 | -1.69E-46 |
| MS.gene052502 | MS.gene81406 | 0.804785 | 1.83E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene81406 | 0.820321 | 7.30E-53 | -1.69E-46 |
| MS.gene053006 | MS.gene81406 | 0.802855 | 4.60E-49 | -1.69E-46 |
| MS.gene053080 | MS.gene81406 | 0.804901 | 1.73E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene81406 | 0.817611 | 3.01E-52 | -1.69E-46 |
| MS.gene054657 | MS.gene81406 | 0.802976 | 4.34E-49 | -1.69E-46 |
| MS.gene05548 | MS.gene81406 | 0.800909 | 1.16E-48 | -1.69E-46 |
| MS.gene057208 | MS.gene81406 | 0.828727 | 7.65E-55 | -1.69E-46 |
| MS.gene058088 | MS.gene81406 | 0.803824 | 2.90E-49 | -1.69E-46 |
| MS.gene058498 | MS.gene81406 | 0.808463 | 3.06E-50 | -1.69E-46 |
| MS.gene058549 | MS.gene81406 | 0.811996 | 5.29E-51 | -1.69E-46 |
| MS.gene058783 | MS.gene81406 | 0.826448 | 2.70E-54 | -1.69E-46 |
| MS.gene058979 | MS.gene81406 | 0.800308 | 1.53E-48 | -1.69E-46 |
| MS.gene05954 | MS.gene81406 | 0.808444 | 3.09E-50 | -1.69E-46 |
| MS.gene05979 | MS.gene81406 | 0.822753 | 2.00E-53 | -1.69E-46 |
| MS.gene059842 | MS.gene81406 | 0.813752 | 2.18E-51 | -1.69E-46 |
| MS.gene059935 | MS.gene81406 | 0.816863 | 4.44E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038202 | MS.gene81406 | PPI |
| MS.gene47603 | MS.gene81406 | PPI |
| MS.gene038142 | MS.gene81406 | PPI |
| MS.gene038143 | MS.gene81406 | PPI |
| MS.gene81406 | MS.gene016987 | PPI |
| MS.gene81406 | MS.gene70895 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81406.t1 | MTR_5g094340 | 94.484 | 417 | 22 | 1 | 1 | 416 | 1 | 417 | 0.0 | 773 |
| MS.gene81406.t1 | MTR_3g055960 | 73.441 | 433 | 95 | 8 | 1 | 416 | 3 | 432 | 0.0 | 600 |
| MS.gene81406.t1 | MTR_5g089720 | 39.234 | 418 | 188 | 11 | 53 | 416 | 32 | 437 | 3.61e-85 | 266 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81406.t1 | AT5G55530 | 55.140 | 428 | 157 | 12 | 1 | 416 | 1 | 405 | 3.06e-145 | 419 |
| MS.gene81406.t1 | AT5G55530 | 55.140 | 428 | 157 | 12 | 1 | 416 | 1 | 405 | 3.06e-145 | 419 |
| MS.gene81406.t1 | AT5G55530 | 55.140 | 428 | 157 | 12 | 1 | 416 | 1 | 405 | 3.06e-145 | 419 |
| MS.gene81406.t1 | AT1G50570 | 51.522 | 427 | 157 | 12 | 1 | 416 | 1 | 388 | 2.91e-125 | 368 |
| MS.gene81406.t1 | AT1G50570 | 51.522 | 427 | 157 | 12 | 1 | 416 | 1 | 388 | 2.91e-125 | 368 |
| MS.gene81406.t1 | AT5G12300 | 47.500 | 200 | 96 | 4 | 54 | 247 | 19 | 215 | 1.18e-54 | 186 |
Find 73 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAAATGAAGACCACTTAA+TGG | 0.202475 | 5.2:+79620722 | MS.gene81406:CDS |
| TCCAATCAGGAGCAAATTTC+AGG | 0.224053 | 5.2:+79620951 | MS.gene81406:CDS |
| CTTCACTCAAATGTGAGATT+TGG | 0.265539 | 5.2:+79620391 | MS.gene81406:CDS |
| TTCACACTCACAACAGGTTT+TGG | 0.272566 | 5.2:-79621047 | None:intergenic |
| TCTAATCCAGAGGAATTTAT+TGG | 0.280624 | 5.2:+79620177 | MS.gene81406:CDS |
| TAGCATAAACATCTTGCTTA+TGG | 0.294667 | 5.2:-79620254 | None:intergenic |
| GAAAATCTTAGTTCAGAAAA+AGG | 0.307362 | 5.2:+79620789 | MS.gene81406:CDS |
| CCAAAGCAAAACCAAGTAAT+TGG | 0.309892 | 5.2:-79620446 | None:intergenic |
| ACCATTCAAAAGTTCTATCT+TGG | 0.319634 | 5.2:+79620059 | MS.gene81406:CDS |
| TTTCTGTCCAATTCAGTATT+AGG | 0.324501 | 5.2:-79620621 | None:intergenic |
| ATATCCTGCTGCACCATCTT+TGG | 0.325154 | 5.2:-79621083 | None:intergenic |
| GAAAGTGGACCAACTAGTTC+AGG | 0.360152 | 5.2:+79621179 | MS.gene81406:CDS |
| TCCTCCTCCATTGATAATCT+TGG | 0.364300 | 5.2:-79620316 | None:intergenic |
| ACCTGAAATTTGCTCCTGAT+TGG | 0.370968 | 5.2:-79620952 | None:intergenic |
| CGGCGCTTCACCCGATGTTA+TGG | 0.378961 | 5.2:+79620584 | MS.gene81406:CDS |
| AGCAATGCCTAATACTGAAT+TGG | 0.385474 | 5.2:+79620614 | MS.gene81406:CDS |
| TGCTGCACCATCTTTGGCTC+TGG | 0.397036 | 5.2:-79621077 | None:intergenic |
| ATAACCTTCGTCTAAGTGTT+AGG | 0.404097 | 5.2:+79620358 | MS.gene81406:CDS |
| TCTAAAGACATTGAGGTCAA+TGG | 0.413522 | 5.2:+79620135 | MS.gene81406:CDS |
| CTCATTCAGCAACGTATTCA+AGG | 0.418214 | 5.2:-79621018 | None:intergenic |
| TATCTTGAAGACCAATTACT+TGG | 0.425671 | 5.2:+79620435 | MS.gene81406:CDS |
| GAACAAAACCTGCTGGTGAA+TGG | 0.428263 | 5.2:-79620542 | None:intergenic |
| GTGAGATTTGGATGCTTAGC+AGG | 0.435343 | 5.2:+79620403 | MS.gene81406:CDS |
| TCAATATTCACACTCACAAC+AGG | 0.440373 | 5.2:-79621053 | None:intergenic |
| GATGGTGCAGCAGGATATAG+TGG | 0.440448 | 5.2:+79621088 | MS.gene81406:CDS |
| CTAGGTGGAGATTCAACCTT+AGG | 0.447213 | 5.2:-79620864 | None:intergenic |
| CCATTCAAAAGTTCTATCTT+GGG | 0.458528 | 5.2:+79620060 | MS.gene81406:CDS |
| TGCTACTAAATCTTCCAATC+AGG | 0.468664 | 5.2:+79620938 | MS.gene81406:CDS |
| GTCAATACCAAGATTATCAA+TGG | 0.470375 | 5.2:+79620309 | MS.gene81406:CDS |
| TGAATCTGTTCAACCTCCTA+AGG | 0.483694 | 5.2:+79620848 | MS.gene81406:CDS |
| TCCGATGTATTGATGAAAGA+TGG | 0.484074 | 5.2:+79620477 | MS.gene81406:CDS |
| ATACTTTGGTACTGATAGCT+TGG | 0.493813 | 5.2:+79620752 | MS.gene81406:CDS |
| AGAGCCAAAGATGGTGCAGC+AGG | 0.494831 | 5.2:+79621079 | MS.gene81406:CDS |
| ATGTTTACATACATCAAGCT+AGG | 0.499383 | 5.2:+79620208 | MS.gene81406:CDS |
| GTTGAGTTTCCTGAACTAGT+TGG | 0.500780 | 5.2:-79621188 | None:intergenic |
| ACTACTCCAATAAATTCCTC+TGG | 0.500999 | 5.2:-79620183 | None:intergenic |
| GATCTATTCCATTCACCAGC+AGG | 0.502121 | 5.2:+79620534 | MS.gene81406:CDS |
| TCCTTTGTCTAAAGACATTG+AGG | 0.512174 | 5.2:+79620128 | MS.gene81406:CDS |
| TGGTGTTGTTTCCTCTTCAG+TGG | 0.515128 | 5.2:+79620893 | MS.gene81406:CDS |
| CTTCCTATGGACTTTGAAAG+TGG | 0.518348 | 5.2:+79621164 | MS.gene81406:CDS |
| GCTGAAATTGCCATAACATC+GGG | 0.522915 | 5.2:-79620594 | None:intergenic |
| TTAATGGTTTCAGAATACTT+TGG | 0.535977 | 5.2:+79620738 | MS.gene81406:CDS |
| AGTATTCTGAAACCATTAAG+TGG | 0.538501 | 5.2:-79620734 | None:intergenic |
| GAATCTCCACCTAGCAGTAA+TGG | 0.539721 | 5.2:+79620873 | MS.gene81406:CDS |
| GAGGTCAATGGAAAAGAAGC+TGG | 0.544229 | 5.2:+79620147 | MS.gene81406:CDS |
| CGAAGGTTATCGTTAAACAC+AGG | 0.552324 | 5.2:-79620345 | None:intergenic |
| ACCAAGATTATCAATGGAGG+AGG | 0.555656 | 5.2:+79620315 | MS.gene81406:CDS |
| AATACTGAATTGGACAGAAA+CGG | 0.555790 | 5.2:+79620624 | MS.gene81406:CDS |
| GGTGGAGATTCAACCTTAGG+AGG | 0.563685 | 5.2:-79620861 | None:intergenic |
| TGAGCTTGCAGCCACTGAAG+AGG | 0.564334 | 5.2:-79620904 | None:intergenic |
| AATGGTGACACAACAGATTG+TGG | 0.566043 | 5.2:-79620042 | None:intergenic |
| AGATTGTAGTTTCTGTTCAG+AGG | 0.567533 | 5.2:-79621210 | None:intergenic |
| GACAACTGAACAAAACCTGC+TGG | 0.568428 | 5.2:-79620549 | None:intergenic |
| CAGTTGTCGCTTGCTTACAA+CGG | 0.570997 | 5.2:+79620564 | MS.gene81406:CDS |
| TGCTGAAATTGCCATAACAT+CGG | 0.572348 | 5.2:-79620595 | None:intergenic |
| TCCATCTTTCATCAATACAT+CGG | 0.573677 | 5.2:-79620478 | None:intergenic |
| GGTCCACTTTCAAAGTCCAT+AGG | 0.582924 | 5.2:-79621167 | None:intergenic |
| AAAAGAGTTGATCTCAAAGA+CGG | 0.598346 | 5.2:+79620984 | MS.gene81406:CDS |
| AAAAGTTCTATCTTGGGACA+TGG | 0.598521 | 5.2:+79620066 | MS.gene81406:CDS |
| ACCTCAATGTCTTTAGACAA+AGG | 0.602535 | 5.2:-79620129 | None:intergenic |
| TATTGAGCCAGAGCCAAAGA+TGG | 0.602654 | 5.2:+79621070 | MS.gene81406:CDS |
| TGCTGGTGAATGGAATAGAT+CGG | 0.604836 | 5.2:-79620532 | None:intergenic |
| TGTTTACATACATCAAGCTA+GGG | 0.605167 | 5.2:+79620209 | MS.gene81406:CDS |
| CGGTCCTAACACTTAGACGA+AGG | 0.613041 | 5.2:-79620362 | None:intergenic |
| GAAACAACACCATTACTGCT+AGG | 0.628325 | 5.2:-79620882 | None:intergenic |
| ACATTTGAGTGAAGAATCAA+CGG | 0.638748 | 5.2:-79620382 | None:intergenic |
| AGATTATCAATGGAGGAGGA+AGG | 0.641532 | 5.2:+79620319 | MS.gene81406:CDS |
| TTCATCAATACATCGGACAA+AGG | 0.653321 | 5.2:-79620471 | None:intergenic |
| AATACCAAGATTATCAATGG+AGG | 0.656844 | 5.2:+79620312 | MS.gene81406:CDS |
| TGAGATTTGGATGCTTAGCA+GGG | 0.672371 | 5.2:+79620404 | MS.gene81406:CDS |
| TGGTGCAGTGTCTAATCCAG+AGG | 0.675789 | 5.2:+79620167 | MS.gene81406:CDS |
| GAAGGTTATCGTTAAACACA+GGG | 0.680691 | 5.2:-79620344 | None:intergenic |
| ACAACACCATTACTGCTAGG+TGG | 0.692805 | 5.2:-79620879 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTACAATTTTTGGATTT+GGG | - | chr5.2:79620710-79620729 | None:intergenic | 20.0% |
| !!! | TCATTTACAATTTTTGGATT+TGG | - | chr5.2:79620711-79620730 | None:intergenic | 20.0% |
| ! | GAAAATCTTAGTTCAGAAAA+AGG | + | chr5.2:79620789-79620808 | MS.gene81406:CDS | 25.0% |
| ! | TTAATGGTTTCAGAATACTT+TGG | + | chr5.2:79620738-79620757 | MS.gene81406:CDS | 25.0% |
| !! | TGGTCTTCATTTACAATTTT+TGG | - | chr5.2:79620717-79620736 | None:intergenic | 25.0% |
| AATACCAAGATTATCAATGG+AGG | + | chr5.2:79620312-79620331 | MS.gene81406:CDS | 30.0% | |
| AATACTGAATTGGACAGAAA+CGG | + | chr5.2:79620624-79620643 | MS.gene81406:CDS | 30.0% | |
| ACATTTGAGTGAAGAATCAA+CGG | - | chr5.2:79620385-79620404 | None:intergenic | 30.0% | |
| ACCATTCAAAAGTTCTATCT+TGG | + | chr5.2:79620059-79620078 | MS.gene81406:CDS | 30.0% | |
| ATGTTTACATACATCAAGCT+AGG | + | chr5.2:79620208-79620227 | MS.gene81406:CDS | 30.0% | |
| CCATTCAAAAGTTCTATCTT+GGG | + | chr5.2:79620060-79620079 | MS.gene81406:CDS | 30.0% | |
| GTCAATACCAAGATTATCAA+TGG | + | chr5.2:79620309-79620328 | MS.gene81406:CDS | 30.0% | |
| TAGCATAAACATCTTGCTTA+TGG | - | chr5.2:79620257-79620276 | None:intergenic | 30.0% | |
| TATCTTGAAGACCAATTACT+TGG | + | chr5.2:79620435-79620454 | MS.gene81406:CDS | 30.0% | |
| TCCATCTTTCATCAATACAT+CGG | - | chr5.2:79620481-79620500 | None:intergenic | 30.0% | |
| TCTAATCCAGAGGAATTTAT+TGG | + | chr5.2:79620177-79620196 | MS.gene81406:CDS | 30.0% | |
| TGTAAATGAAGACCACTTAA+TGG | + | chr5.2:79620722-79620741 | MS.gene81406:CDS | 30.0% | |
| TGTTTACATACATCAAGCTA+GGG | + | chr5.2:79620209-79620228 | MS.gene81406:CDS | 30.0% | |
| TTTCTGTCCAATTCAGTATT+AGG | - | chr5.2:79620624-79620643 | None:intergenic | 30.0% | |
| ! | AAAAGAGTTGATCTCAAAGA+CGG | + | chr5.2:79620984-79621003 | MS.gene81406:CDS | 30.0% |
| ! | AAGATTTTCAGTATCAGTAG+TGG | - | chr5.2:79620778-79620797 | None:intergenic | 30.0% |
| !! | AGTATTCTGAAACCATTAAG+TGG | - | chr5.2:79620737-79620756 | None:intergenic | 30.0% |
| !! | CTTCATTTTTGCTAATGACT+CGG | - | chr5.2:79621144-79621163 | None:intergenic | 30.0% |
| !!! | TTGGTATTGACAGAATTTTC+AGG | - | chr5.2:79620300-79620319 | None:intergenic | 30.0% |
| AAAAGTTCTATCTTGGGACA+TGG | + | chr5.2:79620066-79620085 | MS.gene81406:CDS | 35.0% | |
| ACCTCAATGTCTTTAGACAA+AGG | - | chr5.2:79620132-79620151 | None:intergenic | 35.0% | |
| ACTACTCCAATAAATTCCTC+TGG | - | chr5.2:79620186-79620205 | None:intergenic | 35.0% | |
| AGATTGTAGTTTCTGTTCAG+AGG | - | chr5.2:79621213-79621232 | None:intergenic | 35.0% | |
| AGCAAAAATGAAGCTTCCTA+TGG | + | chr5.2:79621151-79621170 | MS.gene81406:CDS | 35.0% | |
| AGCAATGCCTAATACTGAAT+TGG | + | chr5.2:79620614-79620633 | MS.gene81406:CDS | 35.0% | |
| ATAACCTTCGTCTAAGTGTT+AGG | + | chr5.2:79620358-79620377 | MS.gene81406:CDS | 35.0% | |
| CCAAAGCAAAACCAAGTAAT+TGG | - | chr5.2:79620449-79620468 | None:intergenic | 35.0% | |
| CTTCACTCAAATGTGAGATT+TGG | + | chr5.2:79620391-79620410 | MS.gene81406:CDS | 35.0% | |
| GAAGGTTATCGTTAAACACA+GGG | - | chr5.2:79620347-79620366 | None:intergenic | 35.0% | |
| TCAATATTCACACTCACAAC+AGG | - | chr5.2:79621056-79621075 | None:intergenic | 35.0% | |
| TCCTTTGTCTAAAGACATTG+AGG | + | chr5.2:79620128-79620147 | MS.gene81406:CDS | 35.0% | |
| TCTAAAGACATTGAGGTCAA+TGG | + | chr5.2:79620135-79620154 | MS.gene81406:CDS | 35.0% | |
| TGCTACTAAATCTTCCAATC+AGG | + | chr5.2:79620938-79620957 | MS.gene81406:CDS | 35.0% | |
| TGCTGAAATTGCCATAACAT+CGG | - | chr5.2:79620598-79620617 | None:intergenic | 35.0% | |
| TTCATCAATACATCGGACAA+AGG | - | chr5.2:79620474-79620493 | None:intergenic | 35.0% | |
| ! | AGTAACTCACGTGTGTTTTA+TGG | + | chr5.2:79621242-79621261 | MS.gene81406:CDS | 35.0% |
| ! | CCCAAGATAGAACTTTTGAA+TGG | - | chr5.2:79620063-79620082 | None:intergenic | 35.0% |
| ! | TCCGATGTATTGATGAAAGA+TGG | + | chr5.2:79620477-79620496 | MS.gene81406:CDS | 35.0% |
| !! | AGAAAAAGGTGTTCAACTTG+TGG | + | chr5.2:79620803-79620822 | MS.gene81406:CDS | 35.0% |
| !! | ATACTTTGGTACTGATAGCT+TGG | + | chr5.2:79620752-79620771 | MS.gene81406:CDS | 35.0% |
| !!! | CCAATTACTTGGTTTTGCTT+TGG | + | chr5.2:79620446-79620465 | MS.gene81406:CDS | 35.0% |
| AATGGTGACACAACAGATTG+TGG | - | chr5.2:79620045-79620064 | None:intergenic | 40.0% | |
| ACCAAGATTATCAATGGAGG+AGG | + | chr5.2:79620315-79620334 | MS.gene81406:CDS | 40.0% | |
| AGATTATCAATGGAGGAGGA+AGG | + | chr5.2:79620319-79620338 | MS.gene81406:CDS | 40.0% | |
| CGAAGGTTATCGTTAAACAC+AGG | - | chr5.2:79620348-79620367 | None:intergenic | 40.0% | |
| CTCATTCAGCAACGTATTCA+AGG | - | chr5.2:79621021-79621040 | None:intergenic | 40.0% | |
| GAAACAACACCATTACTGCT+AGG | - | chr5.2:79620885-79620904 | None:intergenic | 40.0% | |
| GCTGAAATTGCCATAACATC+GGG | - | chr5.2:79620597-79620616 | None:intergenic | 40.0% | |
| GTTGAGTTTCCTGAACTAGT+TGG | - | chr5.2:79621191-79621210 | None:intergenic | 40.0% | |
| TCCAATCAGGAGCAAATTTC+AGG | + | chr5.2:79620951-79620970 | MS.gene81406:CDS | 40.0% | |
| TGAATCTGTTCAACCTCCTA+AGG | + | chr5.2:79620848-79620867 | MS.gene81406:CDS | 40.0% | |
| TGAGATTTGGATGCTTAGCA+GGG | + | chr5.2:79620404-79620423 | MS.gene81406:CDS | 40.0% | |
| TGCTGGTGAATGGAATAGAT+CGG | - | chr5.2:79620535-79620554 | None:intergenic | 40.0% | |
| ! | ACCTGAAATTTGCTCCTGAT+TGG | - | chr5.2:79620955-79620974 | None:intergenic | 40.0% |
| ! | CTTCCTATGGACTTTGAAAG+TGG | + | chr5.2:79621164-79621183 | MS.gene81406:CDS | 40.0% |
| ! | TCCTCCTCCATTGATAATCT+TGG | - | chr5.2:79620319-79620338 | None:intergenic | 40.0% |
| ! | TTCACACTCACAACAGGTTT+TGG | - | chr5.2:79621050-79621069 | None:intergenic | 40.0% |
| !!! | GCTTTTTTCGGAGTCTTTCT+CGG | - | chr5.2:79620652-79620671 | None:intergenic | 40.0% |
| ACAACACCATTACTGCTAGG+TGG | - | chr5.2:79620882-79620901 | None:intergenic | 45.0% | |
| ATATCCTGCTGCACCATCTT+TGG | - | chr5.2:79621086-79621105 | None:intergenic | 45.0% | |
| CTAGGTGGAGATTCAACCTT+AGG | - | chr5.2:79620867-79620886 | None:intergenic | 45.0% | |
| GAAAGTGGACCAACTAGTTC+AGG | + | chr5.2:79621179-79621198 | MS.gene81406:CDS | 45.0% | |
| GAACAAAACCTGCTGGTGAA+TGG | - | chr5.2:79620545-79620564 | None:intergenic | 45.0% | |
| GAATCTCCACCTAGCAGTAA+TGG | + | chr5.2:79620873-79620892 | MS.gene81406:CDS | 45.0% | |
| GACAACTGAACAAAACCTGC+TGG | - | chr5.2:79620552-79620571 | None:intergenic | 45.0% | |
| GAGGTCAATGGAAAAGAAGC+TGG | + | chr5.2:79620147-79620166 | MS.gene81406:CDS | 45.0% | |
| GATCTATTCCATTCACCAGC+AGG | + | chr5.2:79620534-79620553 | MS.gene81406:CDS | 45.0% | |
| GGTCCACTTTCAAAGTCCAT+AGG | - | chr5.2:79621170-79621189 | None:intergenic | 45.0% | |
| GTGAGATTTGGATGCTTAGC+AGG | + | chr5.2:79620403-79620422 | MS.gene81406:CDS | 45.0% | |
| TATTGAGCCAGAGCCAAAGA+TGG | + | chr5.2:79621070-79621089 | MS.gene81406:CDS | 45.0% | |
| ! | CAGTTGTCGCTTGCTTACAA+CGG | + | chr5.2:79620564-79620583 | MS.gene81406:CDS | 45.0% |
| !! | TGGTGTTGTTTCCTCTTCAG+TGG | + | chr5.2:79620893-79620912 | MS.gene81406:CDS | 45.0% |
| AAAAAGCGAGTCGCTCGTGA+AGG | + | chr5.2:79620665-79620684 | MS.gene81406:CDS | 50.0% | |
| CGGTCCTAACACTTAGACGA+AGG | - | chr5.2:79620365-79620384 | None:intergenic | 50.0% | |
| GATGGTGCAGCAGGATATAG+TGG | + | chr5.2:79621088-79621107 | MS.gene81406:CDS | 50.0% | |
| GGTGGAGATTCAACCTTAGG+AGG | - | chr5.2:79620864-79620883 | None:intergenic | 50.0% | |
| TGGTGCAGTGTCTAATCCAG+AGG | + | chr5.2:79620167-79620186 | MS.gene81406:CDS | 50.0% | |
| !!! | CACGAGCGACTCGCTTTTTT+CGG | - | chr5.2:79620664-79620683 | None:intergenic | 50.0% |
| AGAGCCAAAGATGGTGCAGC+AGG | + | chr5.2:79621079-79621098 | MS.gene81406:CDS | 55.0% | |
| TGAGCTTGCAGCCACTGAAG+AGG | - | chr5.2:79620907-79620926 | None:intergenic | 55.0% | |
| ! | TGCTGCACCATCTTTGGCTC+TGG | - | chr5.2:79621080-79621099 | None:intergenic | 55.0% |
| CGGCGCTTCACCCGATGTTA+TGG | + | chr5.2:79620584-79620603 | MS.gene81406:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 79620033 | 79621283 | 79620033 | ID=MS.gene81406 |
| chr5.2 | mRNA | 79620033 | 79621283 | 79620033 | ID=MS.gene81406.t1;Parent=MS.gene81406 |
| chr5.2 | exon | 79620033 | 79621283 | 79620033 | ID=MS.gene81406.t1.exon1;Parent=MS.gene81406.t1 |
| chr5.2 | CDS | 79620033 | 79621283 | 79620033 | ID=cds.MS.gene81406.t1;Parent=MS.gene81406.t1 |
| Gene Sequence |
| Protein sequence |
