Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81831.t1 | XP_003619856.1 | 91.8 | 159 | 1 | 1 | 1 | 147 | 72 | 230 | 8.40E-77 | 296.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81831.t1 | Q9LE73 | 55.4 | 157 | 53 | 4 | 1 | 141 | 40 | 195 | 4.4e-42 | 172.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81831.t1 | G7KQ94 | 91.8 | 159 | 1 | 1 | 1 | 147 | 72 | 230 | 6.0e-77 | 296.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene81831 | 0.800777 | 1.23E-48 | -1.69E-46 |
| MS.gene049264 | MS.gene81831 | 0.820361 | 7.14E-53 | -1.69E-46 |
| MS.gene049786 | MS.gene81831 | 0.822986 | 1.77E-53 | -1.69E-46 |
| MS.gene050253 | MS.gene81831 | 0.833151 | 6.29E-56 | -1.69E-46 |
| MS.gene050300 | MS.gene81831 | -0.801992 | 6.93E-49 | -1.69E-46 |
| MS.gene050439 | MS.gene81831 | 0.810195 | 1.30E-50 | -1.69E-46 |
| MS.gene051332 | MS.gene81831 | 0.80513 | 1.55E-49 | -1.69E-46 |
| MS.gene051490 | MS.gene81831 | 0.802152 | 6.43E-49 | -1.69E-46 |
| MS.gene051492 | MS.gene81831 | 0.816193 | 6.28E-52 | -1.69E-46 |
| MS.gene051676 | MS.gene81831 | 0.839488 | 1.54E-57 | -1.69E-46 |
| MS.gene052493 | MS.gene81831 | 0.803899 | 2.80E-49 | -1.69E-46 |
| MS.gene053094 | MS.gene81831 | 0.805437 | 1.34E-49 | -1.69E-46 |
| MS.gene053298 | MS.gene81831 | 0.842972 | 1.86E-58 | -1.69E-46 |
| MS.gene053340 | MS.gene81831 | 0.841941 | 3.50E-58 | -1.69E-46 |
| MS.gene053963 | MS.gene81831 | 0.803026 | 4.24E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene81831 | 0.817935 | 2.55E-52 | -1.69E-46 |
| MS.gene055313 | MS.gene81831 | 0.819425 | 1.17E-52 | -1.69E-46 |
| MS.gene055603 | MS.gene81831 | 0.824107 | 9.66E-54 | -1.69E-46 |
| MS.gene056901 | MS.gene81831 | 0.81589 | 7.33E-52 | -1.69E-46 |
| MS.gene057155 | MS.gene81831 | 0.800653 | 1.30E-48 | -1.69E-46 |
| MS.gene057208 | MS.gene81831 | 0.80031 | 1.53E-48 | -1.69E-46 |
| MS.gene058526 | MS.gene81831 | 0.810583 | 1.07E-50 | -1.69E-46 |
| MS.gene058527 | MS.gene81831 | 0.810035 | 1.41E-50 | -1.69E-46 |
| MS.gene058528 | MS.gene81831 | 0.812816 | 3.51E-51 | -1.69E-46 |
| MS.gene059774 | MS.gene81831 | 0.835234 | 1.89E-56 | -1.69E-46 |
| MS.gene060259 | MS.gene81831 | 0.804559 | 2.04E-49 | -1.69E-46 |
| MS.gene060697 | MS.gene81831 | 0.835983 | 1.22E-56 | -1.69E-46 |
| MS.gene060879 | MS.gene81831 | 0.822203 | 2.69E-53 | -1.69E-46 |
| MS.gene061047 | MS.gene81831 | 0.817702 | 2.87E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81831.t1 | MTR_6g070920 | 91.824 | 159 | 1 | 1 | 1 | 147 | 72 | 230 | 4.45e-105 | 299 |
| MS.gene81831.t1 | MTR_6g070920 | 87.407 | 135 | 5 | 1 | 1 | 123 | 72 | 206 | 5.16e-83 | 243 |
| MS.gene81831.t1 | MTR_3g065330 | 55.696 | 158 | 53 | 4 | 1 | 142 | 10 | 166 | 3.17e-54 | 169 |
| MS.gene81831.t1 | MTR_1g032290 | 54.717 | 159 | 56 | 4 | 1 | 144 | 1 | 158 | 8.86e-54 | 167 |
| MS.gene81831.t1 | MTR_8g105140 | 54.037 | 161 | 58 | 4 | 1 | 146 | 1 | 160 | 2.06e-53 | 166 |
| MS.gene81831.t1 | MTR_5g078020 | 51.656 | 151 | 55 | 3 | 8 | 142 | 16 | 164 | 5.82e-46 | 148 |
| MS.gene81831.t1 | MTR_6g070920 | 81.319 | 91 | 5 | 1 | 1 | 79 | 72 | 162 | 1.46e-45 | 146 |
| MS.gene81831.t1 | MTR_3g065330 | 55.556 | 135 | 43 | 4 | 1 | 119 | 32 | 165 | 4.65e-43 | 140 |
| MS.gene81831.t1 | MTR_8g039690 | 41.509 | 159 | 72 | 3 | 2 | 139 | 1 | 159 | 1.78e-33 | 116 |
| MS.gene81831.t1 | MTR_7g084380 | 42.331 | 163 | 70 | 4 | 2 | 140 | 1 | 163 | 1.80e-32 | 114 |
| MS.gene81831.t1 | MTR_7g084380 | 40.288 | 139 | 59 | 4 | 26 | 140 | 21 | 159 | 2.40e-23 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81831.t1 | AT1G18300 | 55.414 | 157 | 53 | 4 | 1 | 141 | 40 | 195 | 2.26e-55 | 172 |
| MS.gene81831.t1 | AT1G73540 | 55.414 | 157 | 53 | 4 | 1 | 143 | 41 | 194 | 3.93e-53 | 167 |
| MS.gene81831.t1 | AT1G14860 | 55.128 | 156 | 55 | 3 | 1 | 142 | 1 | 155 | 8.93e-53 | 165 |
| MS.gene81831.t1 | AT2G01670 | 50.932 | 161 | 64 | 3 | 1 | 147 | 6 | 165 | 3.50e-50 | 159 |
| MS.gene81831.t1 | AT1G12880 | 42.169 | 166 | 69 | 4 | 2 | 140 | 1 | 166 | 5.44e-33 | 115 |
| MS.gene81831.t1 | AT3G26690 | 40.120 | 167 | 72 | 4 | 2 | 140 | 1 | 167 | 8.81e-30 | 107 |
| MS.gene81831.t1 | AT3G26690 | 40.120 | 167 | 72 | 4 | 2 | 140 | 1 | 167 | 8.81e-30 | 107 |
| MS.gene81831.t1 | AT3G12600 | 43.750 | 160 | 67 | 4 | 2 | 138 | 1 | 160 | 1.86e-26 | 98.2 |
| MS.gene81831.t1 | AT3G12600 | 43.243 | 148 | 61 | 4 | 14 | 138 | 4 | 151 | 1.81e-22 | 87.8 |
Find 33 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCTTATGTTCATTTC+TGG | 0.092026 | 6.3:+67489535 | None:intergenic |
| TGCAGAGTAATTTGGGTAAA+TGG | 0.215433 | 6.3:-67489639 | MS.gene81831:intron |
| TGAACATAAGAAGAAGAAAA+TGG | 0.253808 | 6.3:-67489528 | MS.gene81831:CDS |
| ATAGAAGAAGCTGGAGTTAT+TGG | 0.256499 | 6.3:-67489774 | MS.gene81831:CDS |
| AATAACTCCAGCTTCTTCTA+TGG | 0.282235 | 6.3:+67489776 | None:intergenic |
| TTAGCAAGGAGTTGGATAAT+TGG | 0.322855 | 6.3:-67489558 | MS.gene81831:CDS |
| GAAGGAAGCTTTAGATGAAT+TGG | 0.336584 | 6.3:-67489122 | MS.gene81831:CDS |
| ACCTAAAACTTAGATTGAAT+TGG | 0.341917 | 6.3:+67489087 | None:intergenic |
| TGCAAATGTCTACCAGTTCT+AGG | 0.360990 | 6.3:+67490517 | None:intergenic |
| GCTTCCTTCATCCAAGCATA+TGG | 0.390570 | 6.3:+67489136 | None:intergenic |
| AAGAAATATGCCCATATGCT+TGG | 0.435806 | 6.3:-67489147 | MS.gene81831:CDS |
| TGTTTGGTTTCTCCTAGAAC+TGG | 0.445974 | 6.3:-67490529 | MS.gene81831:CDS |
| ATTGGAGAATATGATGTGTT+TGG | 0.449206 | 6.3:-67490545 | None:intergenic |
| GAACATAAGAAGAAGAAAAT+GGG | 0.454169 | 6.3:-67489527 | MS.gene81831:intron |
| GTTCCCTTTGCTTGTTAGCA+AGG | 0.472162 | 6.3:-67489572 | MS.gene81831:CDS |
| TTTGCTTGTTAGCAAGGAGT+TGG | 0.481309 | 6.3:-67489566 | MS.gene81831:CDS |
| AAAGAATGGAACTCAAGAAA+AGG | 0.494824 | 6.3:-67489904 | MS.gene81831:CDS |
| TCTCAAAGCAGCTTGTTCCA+TGG | 0.496073 | 6.3:+67489803 | None:intergenic |
| AGAGAAACCATAGAAGAAGC+TGG | 0.505150 | 6.3:-67489783 | MS.gene81831:CDS |
| AACTCAAGAAAAGGAAATAG+AGG | 0.509278 | 6.3:-67489895 | MS.gene81831:CDS |
| AACTCCTTGCTAACAAGCAA+AGG | 0.516565 | 6.3:+67489568 | None:intergenic |
| CTTCCTTCATCCAAGCATAT+GGG | 0.522789 | 6.3:+67489137 | None:intergenic |
| ACAAGGATGTCGTCAAGTTG+TGG | 0.541451 | 6.3:-67490485 | MS.gene81831:CDS |
| CATGTATCCTTCATGCATAG+TGG | 0.542137 | 6.3:+67489594 | None:intergenic |
| CAAGGATGTCGTCAAGTTGT+GGG | 0.550727 | 6.3:-67490484 | MS.gene81831:CDS |
| ACTCCTTGCTAACAAGCAAA+GGG | 0.551729 | 6.3:+67489569 | None:intergenic |
| ATGCCCATATGCTTGGATGA+AGG | 0.557447 | 6.3:-67489140 | MS.gene81831:CDS |
| ATCCTTCATGCATAGTGGGT+TGG | 0.562217 | 6.3:+67489599 | None:intergenic |
| ATGTATCCTTCATGCATAGT+GGG | 0.569535 | 6.3:+67489595 | None:intergenic |
| CATTTGCAACGTTATGAACA+AGG | 0.571762 | 6.3:-67490502 | MS.gene81831:CDS |
| CGCCAACCCACTATGCATGA+AGG | 0.576057 | 6.3:-67489601 | MS.gene81831:CDS |
| AAGGATGTCGTCAAGTTGTG+GGG | 0.655005 | 6.3:-67490483 | MS.gene81831:intron |
| TGTAATCATGCAGTTGACTG+TGG | 0.660929 | 6.3:-67489179 | MS.gene81831:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATAAAAGTTGAATAT+AGG | + | chr6.3:67490145-67490164 | None:intergenic | 10.0% |
| !!! | ATTTTTCATGAAATAATATT+TGG | - | chr6.3:67489931-67489950 | MS.gene81831:intron | 10.0% |
| !! | TTACAAATGAAAGAAATATT+AGG | + | chr6.3:67490437-67490456 | None:intergenic | 15.0% |
| !!! | AAGTTTTGATTTTTAAGATT+TGG | - | chr6.3:67489462-67489481 | MS.gene81831:intron | 15.0% |
| !!! | AATTTGAATTTGATTTATGA+GGG | - | chr6.3:67489635-67489654 | MS.gene81831:CDS | 15.0% |
| !!! | GAAATCTTTTGAAATTTTTA+AGG | - | chr6.3:67489418-67489437 | MS.gene81831:intron | 15.0% |
| !!! | GACAATTTATGAAATTTTTA+AGG | - | chr6.3:67489261-67489280 | MS.gene81831:intron | 15.0% |
| !!! | GTTTTTTTTTTTTCTCAATT+GGG | - | chr6.3:67489351-67489370 | MS.gene81831:intron | 15.0% |
| !!! | TAATTTGAATTTGATTTATG+AGG | - | chr6.3:67489634-67489653 | MS.gene81831:CDS | 15.0% |
| !!! | TGTAATAACTTTTTTAGATT+TGG | - | chr6.3:67489902-67489921 | MS.gene81831:CDS | 15.0% |
| !! | ATGATTCAACAATGAATAAA+AGG | + | chr6.3:67489567-67489586 | None:intergenic | 20.0% |
| !! | TCTTAATTAAGTAGCATTAT+TGG | - | chr6.3:67490384-67490403 | MS.gene81831:intron | 20.0% |
| !! | TGATTCAACAATGAATAAAA+GGG | + | chr6.3:67489566-67489585 | None:intergenic | 20.0% |
| !! | TTTATAAATGACACTTGATT+AGG | + | chr6.3:67490318-67490337 | None:intergenic | 20.0% |
| !! | TTTATTCATTGTTGAATCAT+TGG | - | chr6.3:67489567-67489586 | MS.gene81831:CDS | 20.0% |
| !!! | AAAATTTTGAATTGAATACG+AGG | - | chr6.3:67489306-67489325 | MS.gene81831:intron | 20.0% |
| !!! | AAATTTTGAATTGAATACGA+GGG | - | chr6.3:67489307-67489326 | MS.gene81831:intron | 20.0% |
| !!! | AAGTTTGGATTTTTATTGTT+TGG | - | chr6.3:67489381-67489400 | MS.gene81831:intron | 20.0% |
| !!! | ATATTGTGATTTGTTCTTAT+GGG | - | chr6.3:67489194-67489213 | MS.gene81831:intron | 20.0% |
| !!! | ATTTTTAAGGTTTTTTCAGT+TGG | - | chr6.3:67489431-67489450 | MS.gene81831:intron | 20.0% |
| !!! | GACAATTTTTGATAACTTTA+AGG | - | chr6.3:67489329-67489348 | MS.gene81831:intron | 20.0% |
| !!! | GGTTTTTTTTTTTTCTCAAT+TGG | - | chr6.3:67489350-67489369 | MS.gene81831:intron | 20.0% |
| !!! | TTTTAAGGTTTTTCTCAATT+GGG | - | chr6.3:67489276-67489295 | MS.gene81831:intron | 20.0% |
| !!! | TTTTAATGTTTTTCTCAAGT+GGG | - | chr6.3:67489514-67489533 | MS.gene81831:intron | 20.0% |
| !!! | TTTTTAAGGTTTTTCTCAAT+TGG | - | chr6.3:67489275-67489294 | MS.gene81831:intron | 20.0% |
| !!! | TTTTTAAGGTTTTTTCAGTT+GGG | - | chr6.3:67489432-67489451 | MS.gene81831:intron | 20.0% |
| !!! | TTTTTAATGTTTTTCTCAAG+TGG | - | chr6.3:67489513-67489532 | MS.gene81831:intron | 20.0% |
| ! | AGATGAATTGACATTTGAAT+AGG | + | chr6.3:67490350-67490369 | None:intergenic | 25.0% |
| ! | CCTTATAGATACAAAAAGAA+TGG | - | chr6.3:67489713-67489732 | MS.gene81831:intron | 25.0% |
| ! | CTTATGGGTTTCTTAAAAAT+TGG | - | chr6.3:67489209-67489228 | MS.gene81831:intron | 25.0% |
| ! | GAACATAAGAAGAAGAAAAT+GGG | - | chr6.3:67490104-67490123 | MS.gene81831:intron | 25.0% |
| ! | TGAACATAAGAAGAAGAAAA+TGG | - | chr6.3:67490103-67490122 | MS.gene81831:intron | 25.0% |
| !! | CCATTCTTTTTGTATCTATA+AGG | + | chr6.3:67489716-67489735 | None:intergenic | 25.0% |
| !!! | AAAAAAGTATTATGTCTGAG+CGG | + | chr6.3:67490246-67490265 | None:intergenic | 25.0% |
| !!! | GATATTGTGATTTGTTCTTA+TGG | - | chr6.3:67489193-67489212 | MS.gene81831:intron | 25.0% |
| !!! | GTTAATCTAACTTTGTTTTG+TGG | - | chr6.3:67489666-67489685 | MS.gene81831:intron | 25.0% |
| !!! | TAACTTTGTTTTGTGGTTTT+TGG | - | chr6.3:67489673-67489692 | MS.gene81831:intron | 25.0% |
| !!! | TTTAAGGTTTTTCTCAATTG+GGG | - | chr6.3:67489277-67489296 | MS.gene81831:intron | 25.0% |
| !!! | TTTTAAGGTTTTTTCAGTTG+GGG | - | chr6.3:67489433-67489452 | MS.gene81831:intron | 25.0% |
| AAAGAATGGAACTCAAGAAA+AGG | - | chr6.3:67489727-67489746 | MS.gene81831:intron | 30.0% | |
| AACTCAAGAAAAGGAAATAG+AGG | - | chr6.3:67489736-67489755 | MS.gene81831:intron | 30.0% | |
| CAATTGGGTTTCTTAAAGTT+TGG | - | chr6.3:67489366-67489385 | MS.gene81831:intron | 30.0% | |
| CTTCTTCTTATGTTCATTTC+TGG | + | chr6.3:67490099-67490118 | None:intergenic | 30.0% | |
| TTCATTGTTGAATCATTGGA+AGG | - | chr6.3:67489571-67489590 | MS.gene81831:CDS | 30.0% | |
| ! | CTTTTGATAAGTGCTCAAAA+GGG | - | chr6.3:67489761-67489780 | MS.gene81831:intron | 30.0% |
| ! | GTTTTCTTGCAGAGTAATTT+GGG | - | chr6.3:67489985-67490004 | MS.gene81831:intron | 30.0% |
| ! | TCTTTTGATAAGTGCTCAAA+AGG | - | chr6.3:67489760-67489779 | MS.gene81831:intron | 30.0% |
| ! | TGTTTTCTTGCAGAGTAATT+TGG | - | chr6.3:67489984-67490003 | MS.gene81831:intron | 30.0% |
| ! | TTGTTTGGAATTGTAGATGA+TGG | - | chr6.3:67489396-67489415 | MS.gene81831:intron | 30.0% |
| AAGAAATATGCCCATATGCT+TGG | - | chr6.3:67490484-67490503 | MS.gene81831:CDS | 35.0% | |
| AATAACTCCAGCTTCTTCTA+TGG | + | chr6.3:67489858-67489877 | None:intergenic | 35.0% | |
| ATAGAAGAAGCTGGAGTTAT+TGG | - | chr6.3:67489857-67489876 | MS.gene81831:intron | 35.0% | |
| ATGTATCCTTCATGCATAGT+GGG | + | chr6.3:67490039-67490058 | None:intergenic | 35.0% | |
| CATTTGCAACGTTATGAACA+AGG | - | chr6.3:67489129-67489148 | MS.gene81831:CDS | 35.0% | |
| TGCAGAGTAATTTGGGTAAA+TGG | - | chr6.3:67489992-67490011 | MS.gene81831:intron | 35.0% | |
| TTAGCAAGGAGTTGGATAAT+TGG | - | chr6.3:67490073-67490092 | MS.gene81831:intron | 35.0% | |
| TTGGGAAAAAGATGAAACCA+TGG | - | chr6.3:67489811-67489830 | MS.gene81831:CDS | 35.0% | |
| !! | GAAGGAAGCTTTAGATGAAT+TGG | - | chr6.3:67490509-67490528 | MS.gene81831:CDS | 35.0% |
| AACTCCTTGCTAACAAGCAA+AGG | + | chr6.3:67490066-67490085 | None:intergenic | 40.0% | |
| ACTCCTTGCTAACAAGCAAA+GGG | + | chr6.3:67490065-67490084 | None:intergenic | 40.0% | |
| AGAGAAACCATAGAAGAAGC+TGG | - | chr6.3:67489848-67489867 | MS.gene81831:intron | 40.0% | |
| AGTGGAATGCAGTTTCCAAA+AGG | - | chr6.3:67489785-67489804 | MS.gene81831:CDS | 40.0% | |
| ATAAGTGCTCAAAAGGGTAG+TGG | - | chr6.3:67489767-67489786 | MS.gene81831:CDS | 40.0% | |
| ATGACACTTGATTAGGCTCA+AGG | + | chr6.3:67490311-67490330 | None:intergenic | 40.0% | |
| CATGTATCCTTCATGCATAG+TGG | + | chr6.3:67490040-67490059 | None:intergenic | 40.0% | |
| CTTCCTTCATCCAAGCATAT+GGG | + | chr6.3:67490497-67490516 | None:intergenic | 40.0% | |
| TGCAAATGTCTACCAGTTCT+AGG | + | chr6.3:67489117-67489136 | None:intergenic | 40.0% | |
| TGTAATCATGCAGTTGACTG+TGG | - | chr6.3:67490452-67490471 | MS.gene81831:intron | 40.0% | |
| ! | TCTTTTTCCCAACCTCCTTT+TGG | + | chr6.3:67489803-67489822 | None:intergenic | 40.0% |
| ! | TGTTTGGTTTCTCCTAGAAC+TGG | - | chr6.3:67489102-67489121 | MS.gene81831:CDS | 40.0% |
| ! | TTTGCTTGTTAGCAAGGAGT+TGG | - | chr6.3:67490065-67490084 | MS.gene81831:intron | 40.0% |
| ATGCCCATATGCTTGGATGA+AGG | - | chr6.3:67490491-67490510 | MS.gene81831:CDS | 45.0% | |
| GCAGTTTCCAAAAGGAGGTT+GGG | - | chr6.3:67489793-67489812 | MS.gene81831:CDS | 45.0% | |
| GCTTCCTTCATCCAAGCATA+TGG | + | chr6.3:67490498-67490517 | None:intergenic | 45.0% | |
| GGAATGCAGTTTCCAAAAGG+AGG | - | chr6.3:67489788-67489807 | MS.gene81831:CDS | 45.0% | |
| TGCAGTTTCCAAAAGGAGGT+TGG | - | chr6.3:67489792-67489811 | MS.gene81831:CDS | 45.0% | |
| ! | AAGGATGTCGTCAAGTTGTG+GGG | - | chr6.3:67489148-67489167 | MS.gene81831:CDS | 45.0% |
| ! | ACAAGGATGTCGTCAAGTTG+TGG | - | chr6.3:67489146-67489165 | MS.gene81831:CDS | 45.0% |
| ! | CAAGGATGTCGTCAAGTTGT+GGG | - | chr6.3:67489147-67489166 | MS.gene81831:CDS | 45.0% |
| ! | GTTCCCTTTGCTTGTTAGCA+AGG | - | chr6.3:67490059-67490078 | MS.gene81831:intron | 45.0% |
| ! | TCTCAAAGCAGCTTGTTCCA+TGG | + | chr6.3:67489831-67489850 | None:intergenic | 45.0% |
| !! | ATCCTTCATGCATAGTGGGT+TGG | + | chr6.3:67490035-67490054 | None:intergenic | 45.0% |
| TTATGTCGCAGCGCAGATTG+AGG | - | chr6.3:67490264-67490283 | MS.gene81831:intron | 50.0% | |
| CGCCAACCCACTATGCATGA+AGG | - | chr6.3:67490030-67490049 | MS.gene81831:intron | 55.0% | |
| TGTCTGAGCGGCTACGATTG+AGG | + | chr6.3:67490234-67490253 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 67489096 | 67490557 | 67489096 | ID=MS.gene81831 |
| chr6.3 | mRNA | 67489096 | 67490557 | 67489096 | ID=MS.gene81831.t1;Parent=MS.gene81831 |
| chr6.3 | exon | 67490484 | 67490557 | 67490484 | ID=MS.gene81831.t1.exon1;Parent=MS.gene81831.t1 |
| chr6.3 | CDS | 67490484 | 67490557 | 67490484 | ID=cds.MS.gene81831.t1;Parent=MS.gene81831.t1 |
| chr6.3 | exon | 67489868 | 67489947 | 67489868 | ID=MS.gene81831.t1.exon2;Parent=MS.gene81831.t1 |
| chr6.3 | CDS | 67489868 | 67489947 | 67489868 | ID=cds.MS.gene81831.t1;Parent=MS.gene81831.t1 |
| chr6.3 | exon | 67489764 | 67489831 | 67489764 | ID=MS.gene81831.t1.exon3;Parent=MS.gene81831.t1 |
| chr6.3 | CDS | 67489764 | 67489831 | 67489764 | ID=cds.MS.gene81831.t1;Parent=MS.gene81831.t1 |
| chr6.3 | exon | 67489528 | 67489656 | 67489528 | ID=MS.gene81831.t1.exon4;Parent=MS.gene81831.t1 |
| chr6.3 | CDS | 67489528 | 67489656 | 67489528 | ID=cds.MS.gene81831.t1;Parent=MS.gene81831.t1 |
| chr6.3 | exon | 67489096 | 67489188 | 67489096 | ID=MS.gene81831.t1.exon5;Parent=MS.gene81831.t1 |
| chr6.3 | CDS | 67489096 | 67489188 | 67489096 | ID=cds.MS.gene81831.t1;Parent=MS.gene81831.t1 |
| Gene Sequence |
| Protein sequence |
