AlfalfaGEDB | MS.gene85110

M. sativa cultivar XinJiangDaYe / MS.gene85110

KEGG: K02922
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01907.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85110.t1	XP_003597753.2	100	94	0	0	1	94	1	94	4.10E-45	190.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85110.t1	Q8LEM8	88.3	94	11	0	1	94	1	94	6.3e-42	171.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85110.t1	B7FGF1	100.0	94	0	0	1	94	1	94	3.0e-45	190.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050277	MS.gene85110	0.831986	1.22E-55	-1.69E-46
MS.gene050290	MS.gene85110	0.808701	2.72E-50	-1.69E-46
MS.gene051063	MS.gene85110	0.80742	5.10E-50	-1.69E-46
MS.gene051330	MS.gene85110	0.845212	4.68E-59	-1.69E-46
MS.gene051746	MS.gene85110	0.823335	1.46E-53	-1.69E-46
MS.gene051748	MS.gene85110	0.826874	2.13E-54	-1.69E-46
MS.gene051903	MS.gene85110	0.864733	9.83E-65	-1.69E-46
MS.gene052947	MS.gene85110	0.839848	1.24E-57	-1.69E-46
MS.gene053952	MS.gene85110	0.826494	2.63E-54	-1.69E-46
MS.gene054937	MS.gene85110	0.8381	3.52E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene052947	MS.gene85110	PPI
MS.gene068255	MS.gene85110	PPI
MS.gene24930	MS.gene85110	PPI
MS.gene33384	MS.gene85110	PPI
MS.gene36310	MS.gene85110	PPI
MS.gene47819	MS.gene85110	PPI
MS.gene85108	MS.gene85110	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85110.t1	MTR_2g101900	100.000	94	0	0	1	94	1	94	4.84e-64	188
MS.gene85110.t1	MTR_0147s0070	96.809	94	3	0	1	94	1	94	1.38e-62	184

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85110.t1	AT3G16080	88.298	94	11	1	94	1	94	7.27e-57	170
MS.gene85110.t1	AT1G52300	88.298	94	11	1	94	1	94	1.73e-56	169
MS.gene85110.t1	AT1G15250	87.234	94	12	1	94	1	94	9.08e-56	167
MS.gene85110.t1	AT1G15250	87.234	94	12	1	94	1	94	9.08e-56	167
MS.gene85110.t1	AT3G16080	93.333	45	3	1	45	1	45	9.58e-25	89.0

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Find 26 sgRNAs with CRISPR-Local

Find 41 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCGCTCTTGAATCGGCG+AGG	0.683649	2.4:-3020989	None:intergenic
AAGCAGAGCATCTACTCTTC+TGG	0.402579	2.4:-3020772	None:intergenic
AGACTCACACACTCTGTGTC+AGG	0.478990	2.4:+3020726	MS.gene85110:CDS
AGCATCTACTCTTCTGGAGA+TGG	0.532321	2.4:-3020766	None:intergenic
ATTTCCTAACACGAGCAGCT+GGG	0.638199	2.4:-3020802	None:intergenic
CACACACTCTGTGTCAGGTG+TGG	0.600659	2.4:+3020731	MS.gene85110:CDS
CAGGAACTGAAGCTGCACCT+AGG	0.634185	2.4:+3021115	MS.gene85110:intron
CAGTTCCAGTAGTCTTTCTA+CGG	0.470228	2.4:-3020940	None:intergenic
CATTTCCTAACACGAGCAGC+TGG	0.431351	2.4:-3020803	None:intergenic
CGTAGAAAGACTACTGGAAC+TGG	0.453204	2.4:+3020941	MS.gene85110:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCACAACATATCAATGATTA+AGG	-	chr2.4:3021083-3021102	None:intergenic	30.0%
CCTTAATCATTGATATGTTG+TGG	+	chr2.4:3021080-3021099	MS.gene85110:intron	30.0%
GTTTATGTGAATGAATTGCA+GGG	+	chr2.4:3020668-3020687	MS.gene85110:intron	30.0%
TTTAGATAACTGGAGTGAAA+AGG	+	chr2.4:3020913-3020932	MS.gene85110:intron	30.0%
CGTTTATGTGAATGAATTGC+AGG	+	chr2.4:3020667-3020686	MS.gene85110:intron	35.0%
CTATACGATTTCGTATATGC+TGG	+	chr2.4:3020627-3020646	MS.gene85110:intron	35.0%
CAGTTCCAGTAGTCTTTCTA+CGG	-	chr2.4:3020943-3020962	None:intergenic	40.0%
GTGAATGAATTGCAGGGTAA+GGG	+	chr2.4:3020674-3020693	MS.gene85110:intron	40.0%
TGATGATAGATGAAGGAGGA+AGG	-	chr2.4:3020605-3020624	None:intergenic	40.0%
TGTGAATGAATTGCAGGGTA+AGG	+	chr2.4:3020673-3020692	MS.gene85110:intron	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	3020590	3021161	3020590	ID=MS.gene85110
chr2.4	mRNA	3020590	3021161	3020590	ID=MS.gene85110.t1;Parent=MS.gene85110
chr2.4	exon	3020590	3020592	3020590	ID=MS.gene85110.t1.exon1;Parent=MS.gene85110.t1
chr2.4	CDS	3020590	3020592	3020590	ID=cds.MS.gene85110.t1;Parent=MS.gene85110.t1
chr2.4	exon	3020689	3020824	3020689	ID=MS.gene85110.t1.exon2;Parent=MS.gene85110.t1
chr2.4	CDS	3020689	3020824	3020689	ID=cds.MS.gene85110.t1;Parent=MS.gene85110.t1
chr2.4	exon	3020918	3021019	3020918	ID=MS.gene85110.t1.exon3;Parent=MS.gene85110.t1
chr2.4	CDS	3020918	3021019	3020918	ID=cds.MS.gene85110.t1;Parent=MS.gene85110.t1
chr2.4	exon	3021118	3021161	3021118	ID=MS.gene85110.t1.exon4;Parent=MS.gene85110.t1
chr2.4	CDS	3021118	3021161	3021118	ID=cds.MS.gene85110.t1;Parent=MS.gene85110.t1

Gene Sequence

>MS.gene85110

ATGGTAACATCTCCTTCCTCCTTCATCTATCATCAATCTATACGATTTCGTATATGCTGGTTATGTTTAGATTAATACGTTTATGTGAATGAATTGCAGGGTAAGGGAACTGGAAGTTTCGGTAAGAGAAGGAACAAGACTCACACACTCTGTGTCAGGTGTGGCCGCCGCAGTTTCCATCTCCAGAAGAGTAGATGCTCTGCTTGTGCTTACCCAGCTGCTCGTGTTAGGAAATGTAATTAGTCTTAATCTATTGTTAATTTGATTTGTAATTAGGGTTTATGTATGTTTGCTTTATTAATTAATTCATTTTGATTATTGATTTTAGATAACTGGAGTGAAAAGGCAATCCGTAGAAAGACTACTGGAACTGGTAGGATGAGGTACTTGCGCAACGTTCCTCGCCGATTCAAGAGCGGTTTTAGAGAGGGTAATTAATCTTTTTCTAGCTTAATATGTTCGATTTAGTTTCTTAAGATTCAGTTTAGATCCTTAATCATTGATATGTTGTGGTTTTTTTTAATACAGGAACTGAAGCTGCACCTAGGAAGAAGGGAGCTGCGTCTGCTTAA

Protein sequence

>MS.gene85110.t1

MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARVRKYNWSEKAIRRKTTGTGRMRYLRNVPRRFKSGFREGTEAAPRKKGAASA