AlfalfaGEDB | MS.gene068255

M. sativa cultivar XinJiangDaYe / MS.gene068255

KEGG: K02922
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01907.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068255.t1	XP_013442541.1	100	95	0	0	1	95	1	95	6.50E-46	193

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068255.t1	Q43292	89.4	94	10	0	1	94	1	94	2.2e-42	172.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068255.t1	G7JJE2	100.0	95	0	0	1	95	1	95	4.7e-46	193.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050290	MS.gene068255	0.856025	4.25E-62	-1.69E-46
MS.gene050752	MS.gene068255	0.818789	1.63E-52	-1.69E-46
MS.gene050838	MS.gene068255	0.820844	5.53E-53	-1.69E-46
MS.gene050916	MS.gene068255	0.806798	6.91E-50	-1.69E-46
MS.gene050955	MS.gene068255	0.802497	5.46E-49	-1.69E-46
MS.gene051330	MS.gene068255	0.813268	2.79E-51	-1.69E-46
MS.gene051746	MS.gene068255	0.805935	1.05E-49	-1.69E-46
MS.gene051850	MS.gene068255	0.80917	2.16E-50	-1.69E-46
MS.gene051903	MS.gene068255	0.849825	2.52E-60	-1.69E-46
MS.gene052947	MS.gene068255	0.840784	7.06E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene052947	MS.gene068255	PPI
MS.gene068255	MS.gene85110	PPI
MS.gene24930	MS.gene068255	PPI
MS.gene33384	MS.gene068255	PPI
MS.gene36310	MS.gene068255	PPI
MS.gene47819	MS.gene068255	PPI
MS.gene85108	MS.gene068255	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068255.t1	MTR_0147s0070	100.000	95	0	0	1	95	1	95	3.99e-65	191
MS.gene068255.t1	MTR_2g101900	96.809	94	3	0	1	94	1	94	1.39e-62	184

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068255.t1	AT1G52300	89.362	94	10	1	94	1	94	1.65e-57	172
MS.gene068255.t1	AT3G16080	88.298	94	11	1	94	1	94	4.05e-57	171
MS.gene068255.t1	AT1G15250	87.368	95	12	1	95	1	95	7.25e-57	170
MS.gene068255.t1	AT1G15250	87.368	95	12	1	95	1	95	7.25e-57	170
MS.gene068255.t1	AT3G16080	93.333	45	3	1	45	1	45	9.42e-25	89.0

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Find 27 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATCCACTCTTGAATCTGCG+AGG	0.695196	4.4:+87356413	None:intergenic
ACACCTAACACAAAGTGTGT+GGG	0.666393	4.4:+87356728	None:intergenic
ACTGGAGTGAGAAGGCTATT+AGG	0.322324	4.4:-87356481	MS.gene068255:CDS
AGACCCACACACTTTGTGTT+AGG	0.406757	4.4:-87356731	MS.gene068255:CDS
AGCAGCGACTCTTCTGGAGA+TGG	0.555977	4.4:+87356691	None:intergenic
AGCAGCTGCTCCCTTGTTCC+TGG	0.247813	4.4:+87355419	None:intergenic
AGGAGAAAGACCACTGGAAC+TGG	0.467139	4.4:-87356461	MS.gene068255:CDS
ATGCTGAGCAGCGACTCTTC+TGG	0.400063	4.4:+87356685	None:intergenic
ATTGTGTGATTTCAGATAAC+TGG	0.324608	4.4:-87356499	MS.gene068255:intron
CACACACTTTGTGTTAGGTG+TGG	0.595008	4.4:-87356726	MS.gene068255:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGTGTGATTTCAGATAAC+TGG	-	chr4.4:87355778-87355797	MS.gene068255:intron	30.0%
ATAAGCTGAATATCCAATGC+AGG	+	chr4.4:87356279-87356298	None:intergenic	35.0%
GTGCTAGAAAAACTAAACAC+AGG	+	chr4.4:87355921-87355940	None:intergenic	35.0%
TAAGCTGAATATCCAATGCA+GGG	+	chr4.4:87356278-87356297	None:intergenic	35.0%
TCAGACACTGTAATGAAACT+GGG	+	chr4.4:87355464-87355483	None:intergenic	35.0%
TTAGGTGTAGCAACTTTCTT+GGG	-	chr4.4:87356217-87356236	MS.gene068255:intron	35.0%
TTCAGACACTGTAATGAAAC+TGG	+	chr4.4:87355465-87355484	None:intergenic	35.0%
TTTAGGTGTAGCAACTTTCT+TGG	-	chr4.4:87356216-87356235	MS.gene068255:intron	35.0%
ACACCTAACACAAAGTGTGT+GGG	+	chr4.4:87355552-87355571	None:intergenic	40.0%
CAGACACTGTAATGAAACTG+GGG	+	chr4.4:87355463-87355482	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	87355410	87356889	87355410	ID=MS.gene068255
chr4.4	mRNA	87355410	87356889	87355410	ID=MS.gene068255.t1;Parent=MS.gene068255
chr4.4	exon	87356887	87356889	87356887	ID=MS.gene068255.t1.exon1;Parent=MS.gene068255.t1
chr4.4	CDS	87356887	87356889	87356887	ID=cds.MS.gene068255.t1;Parent=MS.gene068255.t1
chr4.4	exon	87356655	87356790	87356655	ID=MS.gene068255.t1.exon2;Parent=MS.gene068255.t1
chr4.4	CDS	87356655	87356790	87356655	ID=cds.MS.gene068255.t1;Parent=MS.gene068255.t1
chr4.4	exon	87356405	87356506	87356405	ID=MS.gene068255.t1.exon3;Parent=MS.gene068255.t1
chr4.4	CDS	87356405	87356506	87356405	ID=cds.MS.gene068255.t1;Parent=MS.gene068255.t1
chr4.4	exon	87355410	87355456	87355410	ID=MS.gene068255.t1.exon4;Parent=MS.gene068255.t1
chr4.4	CDS	87355410	87355456	87355410	ID=cds.MS.gene068255.t1;Parent=MS.gene068255.t1

Gene Sequence

>MS.gene068255

ATGGTATTTTGCATTCTCTCTTCTCTCTCTCTCTCTCCTTCGATCCAAAACCCCAGTTTCATTACAGTGTCTGAATCGATTATTGAATGATTTTTGCAGGGTAAGGGAACAGGCAGTTTTGGTAAGAGAAGGAACAAGACCCACACACTTTGTGTTAGGTGTGGCCGTCGCAGTTTCCATCTCCAGAAGAGTCGCTGCTCAGCATGTGCTTATCCAGCTGCACGTGTCAGGAAATGTAAGTTTTTTTTTGTCAAAATTCGATTTTTGTGTTTTTAGATTTAGGGTTTAAGTTCAGGAAATGGAAGTGTTTTTTGATTTTCGAAAATGGGTTTTTGTCAAAATTTGATTTTTGAATTTGGGCGTTTTGTATTGTGTGATTTCAGATAACTGGAGTGAGAAGGCTATTAGGAGAAAGACCACTGGAACTGGTAGGATGAGGTACTTGAGGAACGTGCCTCGCAGATTCAAGAGTGGATTCAGAGAAGGTAATTTTTTCTTTAATCAATTTCCTGTGTTTAGTTTTTCTAGCACGTGCAATGCTTTAAATGTATAATGATTAAGCAATAATTTATGAATCAATAGATGAATAACTGTTAAGTTCATAAAGTAAAATGTTTTGTATTTGATTTAATTGATTGATCAATCAGGGTGATTTTTCTAGAATTATCATTTTTTTGGTACGCTAGAATGAGCAACTTTACAATATGATTTAATTGATAATATCATTATCAATAGATGAATGACTGTTAAGCTTAAACTTCTGTGTGTTACTGAATGAGTTGATTTAGGAGAGCCAAATCTCTTTATTTAGGTGTAGCAACTTTCTTGGGTTTGTGTTTTGTTAAAATGATTACAATGATCAAGTCCCTGCATTGGATATTCAGCTTATTTGCACAATAACTGCTGCTCATGCATAAGCTTGCATACGCTATTTTTAACAGCAAAAGAAAAAGTAACGTTAAATTATTTTTATATATGGTATAAGTTGTTTTATAAGCTATATTTAAGAAACTTGTGAAAAATAAGTTGAAAAAACCTAATAAAAATGGTCATAAGCTGTTTCATAAGTTCTCACAACTTATGTTAGTAGATAAGTTCAACTAAGGCAATCCATGCAGGTTCTAATTTAGCTCAGTTGGATCTTGGTTCTTTTAGGTGTGTTATTCTGTTTGTATTGAAATATTATTATGATTATAATACGTTAAATGTTAATTTTTACATGTTTTACTATAGGTGTGTTATTTTATAAGCGCCAAATCTCTGTTTTAAGTGAATTATTTGTTTGTTTGTGTATTTTGCTAATGTGAGCTCTTTTAGTTCTGTTTTTTTAGCTTTTGTTAGCATGATTGTATGGAAGTAGTTAAATCACTTTCTGAGTTGTTATTTTTTCTGGATTATTTTTTTGTTGATATGATTATTATTGTTTAAACCAGGTACTGAAGCTGCACCCAGGAACAAGGGAGCAGCTGCTTCTACCTAA

Protein sequence

>MS.gene068255.t1

MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARVRKYNWSEKAIRRKTTGTGRMRYLRNVPRRFKSGFREGTEAAPRNKGAAAST