Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33384.t1 | XP_013442541.1 | 100 | 95 | 0 | 0 | 1 | 95 | 1 | 95 | 6.50E-46 | 193 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33384.t1 | Q43292 | 89.4 | 94 | 10 | 0 | 1 | 94 | 1 | 94 | 2.2e-42 | 172.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33384.t1 | G7JJE2 | 100.0 | 95 | 0 | 0 | 1 | 95 | 1 | 95 | 4.7e-46 | 193.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049129 | MS.gene33384 | -0.803127 | 4.04E-49 | -1.69E-46 |
MS.gene049411 | MS.gene33384 | 0.800045 | 1.73E-48 | -1.69E-46 |
MS.gene049857 | MS.gene33384 | 0.809829 | 1.56E-50 | -1.69E-46 |
MS.gene049887 | MS.gene33384 | 0.818823 | 1.60E-52 | -1.69E-46 |
MS.gene050277 | MS.gene33384 | 0.821582 | 3.74E-53 | -1.69E-46 |
MS.gene050320 | MS.gene33384 | 0.847208 | 1.34E-59 | -1.69E-46 |
MS.gene050752 | MS.gene33384 | 0.847785 | 9.29E-60 | -1.69E-46 |
MS.gene050838 | MS.gene33384 | 0.886204 | 4.19E-72 | -1.69E-46 |
MS.gene050955 | MS.gene33384 | 0.81541 | 9.38E-52 | -1.69E-46 |
MS.gene051003 | MS.gene33384 | 0.805134 | 1.55E-49 | -1.69E-46 |
MS.gene051063 | MS.gene33384 | 0.835597 | 1.53E-56 | -1.69E-46 |
MS.gene051234 | MS.gene33384 | 0.809646 | 1.71E-50 | -1.69E-46 |
MS.gene051245 | MS.gene33384 | 0.804539 | 2.06E-49 | -1.69E-46 |
MS.gene051330 | MS.gene33384 | 0.852222 | 5.32E-61 | -1.69E-46 |
MS.gene051343 | MS.gene33384 | 0.803971 | 2.70E-49 | -1.69E-46 |
MS.gene05134 | MS.gene33384 | 0.801168 | 1.02E-48 | -1.69E-46 |
MS.gene051451 | MS.gene33384 | 0.80065 | 1.30E-48 | -1.69E-46 |
MS.gene051746 | MS.gene33384 | 0.831613 | 1.51E-55 | -1.69E-46 |
MS.gene051748 | MS.gene33384 | 0.842193 | 3.00E-58 | -1.69E-46 |
MS.gene051756 | MS.gene33384 | 0.855759 | 5.08E-62 | -1.69E-46 |
MS.gene051850 | MS.gene33384 | 0.853744 | 1.95E-61 | -1.69E-46 |
MS.gene051885 | MS.gene33384 | 0.817924 | 2.56E-52 | -1.69E-46 |
MS.gene051903 | MS.gene33384 | 0.90913 | 8.00E-82 | -1.69E-46 |
MS.gene052202 | MS.gene33384 | 0.80219 | 6.31E-49 | -1.69E-46 |
MS.gene052947 | MS.gene33384 | 0.870297 | 1.62E-66 | -1.69E-46 |
MS.gene053109 | MS.gene33384 | 0.846257 | 2.43E-59 | -1.69E-46 |
MS.gene053952 | MS.gene33384 | 0.878617 | 2.43E-69 | -1.69E-46 |
MS.gene054403 | MS.gene33384 | 0.847511 | 1.10E-59 | -1.69E-46 |
MS.gene054937 | MS.gene33384 | 0.827434 | 1.57E-54 | -1.69E-46 |
MS.gene055424 | MS.gene33384 | 0.852958 | 3.28E-61 | -1.69E-46 |
MS.gene056075 | MS.gene33384 | 0.865172 | 7.16E-65 | -1.69E-46 |
MS.gene056432 | MS.gene33384 | 0.801642 | 8.18E-49 | -1.69E-46 |
MS.gene056631 | MS.gene33384 | 0.831064 | 2.06E-55 | -1.69E-46 |
MS.gene057057 | MS.gene33384 | 0.807147 | 5.83E-50 | -1.69E-46 |
MS.gene057094 | MS.gene33384 | 0.874257 | 7.78E-68 | -1.69E-46 |
MS.gene057234 | MS.gene33384 | 0.848258 | 6.87E-60 | -1.69E-46 |
MS.gene05769 | MS.gene33384 | 0.803461 | 3.45E-49 | -1.69E-46 |
MS.gene057705 | MS.gene33384 | 0.80522 | 1.48E-49 | -1.69E-46 |
MS.gene05781 | MS.gene33384 | 0.825475 | 4.60E-54 | -1.69E-46 |
MS.gene057999 | MS.gene33384 | 0.812916 | 3.33E-51 | -1.69E-46 |
MS.gene058055 | MS.gene33384 | 0.802195 | 6.30E-49 | -1.69E-46 |
MS.gene058074 | MS.gene33384 | 0.801876 | 7.32E-49 | -1.69E-46 |
MS.gene058238 | MS.gene33384 | 0.826764 | 2.27E-54 | -1.69E-46 |
MS.gene058654 | MS.gene33384 | 0.820672 | 6.06E-53 | -1.69E-46 |
MS.gene058906 | MS.gene33384 | 0.823732 | 1.18E-53 | -1.69E-46 |
MS.gene059171 | MS.gene33384 | 0.827808 | 1.27E-54 | -1.69E-46 |
MS.gene059227 | MS.gene33384 | 0.835306 | 1.81E-56 | -1.69E-46 |
MS.gene059898 | MS.gene33384 | 0.812366 | 4.40E-51 | -1.69E-46 |
MS.gene06001 | MS.gene33384 | 0.878437 | 2.81E-69 | -1.69E-46 |
MS.gene06011 | MS.gene33384 | 0.828174 | 1.04E-54 | -1.69E-46 |
MS.gene060463 | MS.gene33384 | 0.831209 | 1.90E-55 | -1.69E-46 |
MS.gene060465 | MS.gene33384 | 0.8321 | 1.15E-55 | -1.69E-46 |
MS.gene060763 | MS.gene33384 | 0.826792 | 2.23E-54 | -1.69E-46 |
MS.gene061145 | MS.gene33384 | 0.876251 | 1.62E-68 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene052947 | MS.gene33384 | PPI |
MS.gene47819 | MS.gene33384 | PPI |
MS.gene33384 | MS.gene85108 | PPI |
MS.gene33384 | MS.gene24930 | PPI |
MS.gene33384 | MS.gene052947 | PPI |
MS.gene33384 | MS.gene068255 | PPI |
MS.gene33384 | MS.gene36310 | PPI |
MS.gene33384 | MS.gene85110 | PPI |
MS.gene33384 | MS.gene47819 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33384.t1 | MTR_0147s0070 | 100.000 | 95 | 0 | 0 | 1 | 95 | 1 | 95 | 3.99e-65 | 191 |
MS.gene33384.t1 | MTR_2g101900 | 96.809 | 94 | 3 | 0 | 1 | 94 | 1 | 94 | 1.39e-62 | 184 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33384.t1 | AT1G52300 | 89.362 | 94 | 10 | 0 | 1 | 94 | 1 | 94 | 1.65e-57 | 172 |
MS.gene33384.t1 | AT3G16080 | 88.298 | 94 | 11 | 0 | 1 | 94 | 1 | 94 | 4.05e-57 | 171 |
MS.gene33384.t1 | AT1G15250 | 87.368 | 95 | 12 | 0 | 1 | 95 | 1 | 95 | 7.25e-57 | 170 |
MS.gene33384.t1 | AT1G15250 | 87.368 | 95 | 12 | 0 | 1 | 95 | 1 | 95 | 7.25e-57 | 170 |
MS.gene33384.t1 | AT3G16080 | 93.333 | 45 | 3 | 0 | 1 | 45 | 1 | 45 | 9.42e-25 | 89.0 |
Find 28 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCAGCTGCTCCCTTGTTCC+TGG | 0.247813 | 4.2:+87835482 | None:intergenic |
ACTGGAGTGAGAAGGCTATT+AGG | 0.322324 | 4.2:-87836504 | MS.gene33384:CDS |
ATTGTGTGATTTCAGATAAC+TGG | 0.324608 | 4.2:-87836522 | MS.gene33384:intron |
ATGCTGAGCAGCGACTCTTC+TGG | 0.400063 | 4.2:+87836733 | None:intergenic |
AGACCCACACACTCTGTGTT+AGG | 0.433282 | 4.2:-87836779 | MS.gene33384:CDS |
GCAGCTGCTCCCTTGTTCCT+GGG | 0.437974 | 4.2:+87835483 | None:intergenic |
CTTATCCAGCTGCACGTGTC+AGG | 0.448216 | 4.2:-87836707 | MS.gene33384:CDS |
GGTAAGGGAACAGGCAGTTT+CGG | 0.454393 | 4.2:-87836816 | MS.gene33384:CDS |
AGGAGAAAGACCACTGGAAC+TGG | 0.467139 | 4.2:-87836484 | MS.gene33384:CDS |
CATTTCCTGACACGTGCAGC+TGG | 0.473916 | 4.2:+87836702 | None:intergenic |
TGAAGCTGCACCCAGGAACA+AGG | 0.550050 | 4.2:-87835493 | MS.gene33384:CDS |
AGCAGCGACTCTTCTGGAGA+TGG | 0.555977 | 4.2:+87836739 | None:intergenic |
CACACCTAACACAGAGTGTG+TGG | 0.573805 | 4.2:+87836775 | None:intergenic |
TTCAAGAGTGGATTCAGAGA+AGG | 0.583941 | 4.2:-87836427 | MS.gene33384:intron |
TTCAGATAACTGGAGTGAGA+AGG | 0.609846 | 4.2:-87836512 | MS.gene33384:intron |
CAGGCAGTTTCGGTAAGAGA+AGG | 0.615161 | 4.2:-87836806 | MS.gene33384:CDS |
CCACTGGAACTGGTAGGATG+AGG | 0.619264 | 4.2:-87836474 | MS.gene33384:CDS |
GCTATTAGGAGAAAGACCAC+TGG | 0.627964 | 4.2:-87836490 | MS.gene33384:CDS |
CTGGTAGGATGAGGTACTTG+AGG | 0.643276 | 4.2:-87836465 | MS.gene33384:CDS |
CACACACTCTGTGTTAGGTG+TGG | 0.644280 | 4.2:-87836774 | MS.gene33384:CDS |
GAAAGACCACTGGAACTGGT+AGG | 0.652178 | 4.2:-87836480 | MS.gene33384:CDS |
GAAGCTGCACCCAGGAACAA+GGG | 0.652652 | 4.2:-87835492 | MS.gene33384:CDS |
TCTGGAGATGGAAACTGCGA+CGG | 0.655757 | 4.2:+87836751 | None:intergenic |
CCTCATCCTACCAGTTCCAG+TGG | 0.656605 | 4.2:+87836474 | None:intergenic |
CAGGTACTGAAGCTGCACCC+AGG | 0.673244 | 4.2:-87835500 | MS.gene33384:CDS |
ACACCTAACACAGAGTGTGT+GGG | 0.685746 | 4.2:+87836776 | None:intergenic |
GTGCCTCGCAGATTCAAGAG+TGG | 0.690811 | 4.2:-87836439 | MS.gene33384:CDS |
AATCCACTCTTGAATCTGCG+AGG | 0.695196 | 4.2:+87836436 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAATTTGATTTTTGTATTT+GGG | - | chr4.2:87835877-87835896 | MS.gene33384:intron | 10.0% |
!! | TTGAAAAAACCTAATAAAAA+TGG | - | chr4.2:87836525-87836544 | MS.gene33384:intron | 15.0% |
!! | TTTGTTGATATGATTATTAT+TGG | - | chr4.2:87836901-87836920 | MS.gene33384:intron | 15.0% |
!!! | ATTTTTGTGTTTTTAGATTT+AGG | - | chr4.2:87835800-87835819 | MS.gene33384:intron | 15.0% |
!!! | CAAAATTTGATTTTTGTATT+TGG | - | chr4.2:87835876-87835895 | MS.gene33384:intron | 15.0% |
!!! | TTCTAGAATTATCATTTTTT+TGG | - | chr4.2:87836195-87836214 | MS.gene33384:intron | 15.0% |
!!! | TTTTTGTGTTTTTAGATTTA+GGG | - | chr4.2:87835801-87835820 | MS.gene33384:intron | 15.0% |
!! | ATTTAATTGATTGATCAATC+AGG | - | chr4.2:87836165-87836184 | MS.gene33384:intron | 20.0% |
!! | TACAACTAAATAAAGAGATT+TGG | + | chr4.2:87836336-87836355 | None:intergenic | 20.0% |
!!! | ATTATTGAATGATTTTTGCA+GGG | - | chr4.2:87835593-87835612 | MS.gene33384:intron | 20.0% |
!!! | ATTTTGACATGTTTTACTAT+AGG | - | chr4.2:87836711-87836730 | MS.gene33384:CDS | 20.0% |
!!! | GTTTTTTGATTTTCGAAAAT+GGG | - | chr4.2:87835846-87835865 | MS.gene33384:intron | 20.0% |
!!! | TGTTTTTTGATTTTCGAAAA+TGG | - | chr4.2:87835845-87835864 | MS.gene33384:intron | 20.0% |
!!! | TTTGTTCGATTTTAGAAAAT+GGG | - | chr4.2:87835760-87835779 | MS.gene33384:intron | 20.0% |
!!! | TTTTGTTCGATTTTAGAAAA+TGG | - | chr4.2:87835759-87835778 | MS.gene33384:intron | 20.0% |
! | ATTCACATAAAACAGAGATT+TGG | + | chr4.2:87836755-87836774 | None:intergenic | 25.0% |
!! | GATTATTGAATGATTTTTGC+AGG | - | chr4.2:87835592-87835611 | MS.gene33384:intron | 25.0% |
!! | TGATTATTATTGGTTAAACC+AGG | - | chr4.2:87836911-87836930 | MS.gene33384:intron | 25.0% |
!!! | AGCTTATGACCATTTTTATT+AGG | + | chr4.2:87836537-87836556 | None:intergenic | 25.0% |
!!! | GTTACTAAATGAGTTGATTT+AGG | - | chr4.2:87836306-87836325 | MS.gene33384:intron | 25.0% |
!!! | TTAGTTGTAGCAACTTTTTT+GGG | - | chr4.2:87836347-87836366 | MS.gene33384:intron | 25.0% |
!!! | TTCTGAGTTGTTATTTTTTC+TGG | - | chr4.2:87836870-87836889 | MS.gene33384:intron | 25.0% |
!!! | TTTAGTTGTAGCAACTTTTT+TGG | - | chr4.2:87836346-87836365 | MS.gene33384:intron | 25.0% |
AATTTAGATCAGTTGGATCT+TGG | - | chr4.2:87836623-87836642 | MS.gene33384:intron | 30.0% | |
ATTGTGTGATTTCAGATAAC+TGG | - | chr4.2:87835908-87835927 | MS.gene33384:intron | 30.0% | |
! | AGGTTCTAATTTAGATCAGT+TGG | - | chr4.2:87836616-87836635 | MS.gene33384:intron | 30.0% |
! | CTTTTGTTAGCATGATTGTA+TGG | - | chr4.2:87836831-87836850 | MS.gene33384:intron | 30.0% |
! | TAGATTTAGGGTTTAAGTTC+AGG | - | chr4.2:87835813-87835832 | MS.gene33384:intron | 30.0% |
GATCTAAATTAGAACCTGCA+TGG | + | chr4.2:87836613-87836632 | None:intergenic | 35.0% | |
GTGCTAGAAAAACTAAACAC+AGG | + | chr4.2:87836051-87836070 | None:intergenic | 35.0% | |
TCAAATAAAGCAATCCATGC+AGG | - | chr4.2:87836596-87836615 | MS.gene33384:intron | 35.0% | |
TCAGACACTGTAATGAAACT+GGG | + | chr4.2:87835569-87835588 | None:intergenic | 35.0% | |
TTCAGACACTGTAATGAAAC+TGG | + | chr4.2:87835570-87835589 | None:intergenic | 35.0% | |
! | GAATGATTTTTGCAGGGTAA+GGG | - | chr4.2:87835599-87835618 | MS.gene33384:intron | 35.0% |
! | TAGGGTTTAAGTTCAGGAAA+TGG | - | chr4.2:87835819-87835838 | MS.gene33384:intron | 35.0% |
! | TGAATGATTTTTGCAGGGTA+AGG | - | chr4.2:87835598-87835617 | MS.gene33384:intron | 35.0% |
CAGACACTGTAATGAAACTG+GGG | + | chr4.2:87835568-87835587 | None:intergenic | 40.0% | |
TTCAGATAACTGGAGTGAGA+AGG | - | chr4.2:87835918-87835937 | MS.gene33384:intron | 40.0% | |
! | AGTTGGATCTTGGTTCTTGT+AGG | - | chr4.2:87836633-87836652 | MS.gene33384:intron | 40.0% |
! | CTGTAATGAAACTGGGGTTT+TGG | + | chr4.2:87835562-87835581 | None:intergenic | 40.0% |
! | TTCAAGAGTGGATTCAGAGA+AGG | - | chr4.2:87836003-87836022 | MS.gene33384:intron | 40.0% |
AATCCACTCTTGAATCTGCG+AGG | + | chr4.2:87835997-87836016 | None:intergenic | 45.0% | |
ACACCTAACACAGAGTGTGT+GGG | + | chr4.2:87835657-87835676 | None:intergenic | 45.0% | |
ACTGGAGTGAGAAGGCTATT+AGG | - | chr4.2:87835926-87835945 | MS.gene33384:intron | 45.0% | |
GCTATTAGGAGAAAGACCAC+TGG | - | chr4.2:87835940-87835959 | MS.gene33384:intron | 45.0% | |
! | TTTTTGCAGGGTAAGGGAAC+AGG | - | chr4.2:87835605-87835624 | MS.gene33384:intron | 45.0% |
!!! | AAACTGGGGTTTTGGATCGA+AGG | + | chr4.2:87835554-87835573 | None:intergenic | 45.0% |
AGACCCACACACTCTGTGTT+AGG | - | chr4.2:87835651-87835670 | MS.gene33384:intron | 50.0% | |
AGAGAGAGAGAGAGAGAGAG+AGG | + | chr4.2:87835495-87835514 | None:intergenic | 50.0% | |
AGGAGAAAGACCACTGGAAC+TGG | - | chr4.2:87835946-87835965 | MS.gene33384:intron | 50.0% | |
CACACACTCTGTGTTAGGTG+TGG | - | chr4.2:87835656-87835675 | MS.gene33384:intron | 50.0% | |
CACACCTAACACAGAGTGTG+TGG | + | chr4.2:87835658-87835677 | None:intergenic | 50.0% | |
CAGGCAGTTTCGGTAAGAGA+AGG | - | chr4.2:87835624-87835643 | MS.gene33384:intron | 50.0% | |
GAAAGACCACTGGAACTGGT+AGG | - | chr4.2:87835950-87835969 | MS.gene33384:intron | 50.0% | |
GGTAAGGGAACAGGCAGTTT+CGG | - | chr4.2:87835614-87835633 | MS.gene33384:intron | 50.0% | |
TCTGGAGATGGAAACTGCGA+CGG | + | chr4.2:87835682-87835701 | None:intergenic | 50.0% | |
! | CTGGTAGGATGAGGTACTTG+AGG | - | chr4.2:87835965-87835984 | MS.gene33384:intron | 50.0% |
ATGCTGAGCAGCGACTCTTC+TGG | + | chr4.2:87835700-87835719 | None:intergenic | 55.0% | |
CATTTCCTGACACGTGCAGC+TGG | + | chr4.2:87835731-87835750 | None:intergenic | 55.0% | |
CCACTGGAACTGGTAGGATG+AGG | - | chr4.2:87835956-87835975 | MS.gene33384:intron | 55.0% | |
CCTCATCCTACCAGTTCCAG+TGG | + | chr4.2:87835959-87835978 | None:intergenic | 55.0% | |
CTTATCCAGCTGCACGTGTC+AGG | - | chr4.2:87835723-87835742 | MS.gene33384:intron | 55.0% | |
GAAGCTGCACCCAGGAACAA+GGG | - | chr4.2:87836938-87836957 | MS.gene33384:intron | 55.0% | |
GTGCCTCGCAGATTCAAGAG+TGG | - | chr4.2:87835991-87836010 | MS.gene33384:intron | 55.0% | |
TGAAGCTGCACCCAGGAACA+AGG | - | chr4.2:87836937-87836956 | MS.gene33384:intron | 55.0% | |
! | AGCAGCGACTCTTCTGGAGA+TGG | + | chr4.2:87835694-87835713 | None:intergenic | 55.0% |
AGCAGCTGCTCCCTTGTTCC+TGG | + | chr4.2:87836951-87836970 | None:intergenic | 60.0% | |
CTGGGTGCAGCTTCAGTACC+TGG | + | chr4.2:87836932-87836951 | None:intergenic | 60.0% | |
GCAGCTGCTCCCTTGTTCCT+GGG | + | chr4.2:87836950-87836969 | None:intergenic | 60.0% | |
!! | CAGGTACTGAAGCTGCACCC+AGG | - | chr4.2:87836930-87836949 | MS.gene33384:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 87835473 | 87836979 | 87835473 | ID=MS.gene33384 |
chr4.2 | mRNA | 87835473 | 87836979 | 87835473 | ID=MS.gene33384.t1;Parent=MS.gene33384 |
chr4.2 | exon | 87836977 | 87836979 | 87836977 | ID=MS.gene33384.t1.exon1;Parent=MS.gene33384.t1 |
chr4.2 | CDS | 87836977 | 87836979 | 87836977 | ID=cds.MS.gene33384.t1;Parent=MS.gene33384.t1 |
chr4.2 | exon | 87836703 | 87836838 | 87836703 | ID=MS.gene33384.t1.exon2;Parent=MS.gene33384.t1 |
chr4.2 | CDS | 87836703 | 87836838 | 87836703 | ID=cds.MS.gene33384.t1;Parent=MS.gene33384.t1 |
chr4.2 | exon | 87836428 | 87836529 | 87836428 | ID=MS.gene33384.t1.exon3;Parent=MS.gene33384.t1 |
chr4.2 | CDS | 87836428 | 87836529 | 87836428 | ID=cds.MS.gene33384.t1;Parent=MS.gene33384.t1 |
chr4.2 | exon | 87835473 | 87835519 | 87835473 | ID=MS.gene33384.t1.exon4;Parent=MS.gene33384.t1 |
chr4.2 | CDS | 87835473 | 87835519 | 87835473 | ID=cds.MS.gene33384.t1;Parent=MS.gene33384.t1 |
Gene Sequence |
Protein sequence |