Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87384.t1 | XP_003629519.1 | 97.4 | 535 | 10 | 1 | 1 | 535 | 1 | 531 | 2.50E-264 | 921 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87384.t1 | Q8W4F0 | 71.7 | 562 | 123 | 5 | 1 | 535 | 1 | 553 | 3.0e-197 | 689.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87384.t1 | G7LFK8 | 97.4 | 535 | 10 | 1 | 1 | 535 | 1 | 531 | 1.8e-264 | 921.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene87384.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene87384 | 0.802755 | 4.83E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene87384 | 0.80631 | 8.75E-50 | -1.69E-46 |
| MS.gene050680 | MS.gene87384 | 0.806304 | 8.78E-50 | -1.69E-46 |
| MS.gene050787 | MS.gene87384 | 0.822345 | 2.49E-53 | -1.69E-46 |
| MS.gene050820 | MS.gene87384 | 0.83742 | 5.25E-57 | -1.69E-46 |
| MS.gene051568 | MS.gene87384 | 0.830185 | 3.39E-55 | -1.69E-46 |
| MS.gene052011 | MS.gene87384 | -0.810231 | 1.28E-50 | -1.69E-46 |
| MS.gene052333 | MS.gene87384 | 0.825752 | 3.95E-54 | -1.69E-46 |
| MS.gene052389 | MS.gene87384 | 0.826192 | 3.10E-54 | -1.69E-46 |
| MS.gene053166 | MS.gene87384 | 0.809416 | 1.91E-50 | -1.69E-46 |
| MS.gene053584 | MS.gene87384 | 0.813705 | 2.24E-51 | -1.69E-46 |
| MS.gene054183 | MS.gene87384 | 0.823844 | 1.11E-53 | -1.69E-46 |
| MS.gene054468 | MS.gene87384 | 0.828729 | 7.65E-55 | -1.69E-46 |
| MS.gene054556 | MS.gene87384 | 0.820162 | 7.93E-53 | -1.69E-46 |
| MS.gene054559 | MS.gene87384 | 0.824549 | 7.60E-54 | -1.69E-46 |
| MS.gene054920 | MS.gene87384 | 0.801821 | 7.51E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene87384 | 0.807491 | 4.93E-50 | -1.69E-46 |
| MS.gene055356 | MS.gene87384 | 0.811579 | 6.52E-51 | -1.69E-46 |
| MS.gene055358 | MS.gene87384 | 0.819929 | 8.97E-53 | -1.69E-46 |
| MS.gene055367 | MS.gene87384 | 0.828681 | 7.85E-55 | -1.69E-46 |
| MS.gene055701 | MS.gene87384 | 0.816452 | 5.49E-52 | -1.69E-46 |
| MS.gene05595 | MS.gene87384 | 0.820279 | 7.46E-53 | -1.69E-46 |
| MS.gene056297 | MS.gene87384 | 0.801539 | 8.59E-49 | -1.69E-46 |
| MS.gene056723 | MS.gene87384 | 0.83943 | 1.59E-57 | -1.69E-46 |
| MS.gene057469 | MS.gene87384 | 0.843467 | 1.38E-58 | -1.69E-46 |
| MS.gene058220 | MS.gene87384 | 0.80229 | 6.02E-49 | -1.69E-46 |
| MS.gene058739 | MS.gene87384 | 0.837813 | 4.16E-57 | -1.69E-46 |
| MS.gene058935 | MS.gene87384 | 0.844333 | 8.07E-59 | -1.69E-46 |
| MS.gene059128 | MS.gene87384 | 0.836761 | 7.74E-57 | -1.69E-46 |
| MS.gene059161 | MS.gene87384 | 0.803232 | 3.85E-49 | -1.69E-46 |
| MS.gene059247 | MS.gene87384 | 0.806904 | 6.56E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene87384 | 0.824211 | 9.13E-54 | -1.69E-46 |
| MS.gene059958 | MS.gene87384 | 0.80599 | 1.02E-49 | -1.69E-46 |
| MS.gene061114 | MS.gene87384 | -0.83158 | 1.54E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87384.t1 | MTR_8g078410 | 96.449 | 535 | 15 | 1 | 1 | 535 | 1 | 531 | 0.0 | 1070 |
| MS.gene87384.t1 | MTR_5g018900 | 75.933 | 536 | 116 | 5 | 1 | 535 | 1 | 524 | 0.0 | 808 |
| MS.gene87384.t1 | MTR_1g021835 | 57.836 | 536 | 157 | 9 | 1 | 535 | 1 | 468 | 0.0 | 582 |
| MS.gene87384.t1 | MTR_5g081160 | 65.416 | 373 | 119 | 3 | 163 | 535 | 141 | 503 | 3.43e-175 | 504 |
| MS.gene87384.t1 | MTR_3g069410 | 57.047 | 447 | 172 | 6 | 105 | 535 | 70 | 512 | 7.65e-166 | 480 |
| MS.gene87384.t1 | MTR_1g021835 | 56.941 | 425 | 122 | 8 | 1 | 424 | 1 | 365 | 6.72e-159 | 459 |
| MS.gene87384.t1 | MTR_1g021835 | 54.133 | 375 | 112 | 7 | 1 | 371 | 1 | 319 | 1.09e-129 | 381 |
| MS.gene87384.t1 | MTR_5g018910 | 63.441 | 93 | 33 | 1 | 156 | 247 | 488 | 580 | 1.46e-34 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87384.t1 | AT4G36860 | 67.972 | 562 | 144 | 5 | 1 | 535 | 1 | 553 | 0.0 | 733 |
| MS.gene87384.t1 | AT4G36860 | 65.299 | 585 | 145 | 5 | 1 | 535 | 1 | 577 | 0.0 | 724 |
| MS.gene87384.t1 | AT4G36860 | 66.519 | 451 | 121 | 4 | 1 | 424 | 1 | 448 | 0.0 | 585 |
| MS.gene87384.t1 | AT1G19270 | 53.097 | 565 | 201 | 8 | 1 | 535 | 1 | 531 | 0.0 | 572 |
| MS.gene87384.t1 | AT1G19270 | 53.097 | 565 | 201 | 8 | 1 | 535 | 1 | 531 | 0.0 | 572 |
| MS.gene87384.t1 | AT2G39830 | 59.020 | 449 | 155 | 7 | 111 | 535 | 75 | 518 | 0.0 | 522 |
| MS.gene87384.t1 | AT2G39830 | 66.220 | 373 | 121 | 3 | 163 | 535 | 160 | 527 | 1.83e-179 | 516 |
| MS.gene87384.t1 | AT2G39830 | 65.691 | 376 | 121 | 4 | 163 | 535 | 160 | 530 | 2.71e-177 | 510 |
| MS.gene87384.t1 | AT5G66610 | 44.444 | 513 | 248 | 11 | 28 | 529 | 65 | 551 | 3.97e-134 | 401 |
| MS.gene87384.t1 | AT2G39830 | 65.233 | 279 | 94 | 3 | 163 | 440 | 160 | 436 | 5.15e-133 | 394 |
| MS.gene87384.t1 | AT5G66610 | 48.826 | 426 | 196 | 8 | 111 | 529 | 14 | 424 | 8.49e-131 | 388 |
| MS.gene87384.t1 | AT5G66620 | 45.010 | 491 | 244 | 11 | 44 | 528 | 170 | 640 | 7.65e-129 | 390 |
| MS.gene87384.t1 | AT5G66620 | 45.010 | 491 | 244 | 11 | 44 | 528 | 161 | 631 | 8.88e-129 | 390 |
| MS.gene87384.t1 | AT5G66620 | 45.010 | 491 | 244 | 11 | 44 | 528 | 161 | 631 | 8.88e-129 | 390 |
| MS.gene87384.t1 | AT5G66610 | 42.222 | 540 | 248 | 12 | 28 | 529 | 65 | 578 | 2.94e-128 | 387 |
| MS.gene87384.t1 | AT5G17890 | 51.309 | 382 | 174 | 6 | 159 | 535 | 1234 | 1608 | 1.83e-112 | 366 |
| MS.gene87384.t1 | AT5G66630 | 47.989 | 373 | 176 | 7 | 159 | 528 | 341 | 698 | 5.23e-109 | 340 |
| MS.gene87384.t1 | AT5G66640 | 48.023 | 354 | 173 | 8 | 182 | 528 | 89 | 438 | 1.63e-100 | 311 |
| MS.gene87384.t1 | AT5G66640 | 48.023 | 354 | 173 | 8 | 182 | 528 | 89 | 438 | 1.63e-100 | 311 |
| MS.gene87384.t1 | AT5G66640 | 45.063 | 395 | 180 | 10 | 141 | 528 | 106 | 470 | 3.09e-100 | 311 |
| MS.gene87384.t1 | AT5G66640 | 48.023 | 354 | 173 | 8 | 182 | 528 | 120 | 469 | 4.33e-100 | 311 |
| MS.gene87384.t1 | AT5G66640 | 49.691 | 324 | 154 | 7 | 212 | 528 | 10 | 331 | 5.79e-96 | 295 |
| MS.gene87384.t1 | AT5G66640 | 43.220 | 354 | 186 | 9 | 182 | 528 | 121 | 466 | 4.21e-83 | 266 |
| MS.gene87384.t1 | AT5G66640 | 43.220 | 354 | 186 | 9 | 182 | 528 | 120 | 465 | 5.02e-83 | 266 |
| MS.gene87384.t1 | AT5G66620 | 38.810 | 353 | 191 | 10 | 44 | 390 | 161 | 494 | 1.22e-72 | 240 |
Find 119 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCCTTATAGCATAATTTA+TGG | 0.189171 | 8.3:-25818511 | None:intergenic |
| AGTATAGAGCACATCCTTTC+TGG | 0.193526 | 8.3:+25819044 | MS.gene87384:CDS |
| ATCCTCGTCCTGAATGTTTA+TGG | 0.214368 | 8.3:-25817115 | None:intergenic |
| CATGCTTGGCTTAGACTTAA+AGG | 0.236159 | 8.3:+25820191 | MS.gene87384:CDS |
| GTGTCTCGATTCGGCTATTA+TGG | 0.241072 | 8.3:+25819312 | MS.gene87384:CDS |
| AACCAGGCAGTGCTCAAGTA+TGG | 0.287660 | 8.3:+25820569 | MS.gene87384:CDS |
| CATATTCCTTCTTCAACTTC+AGG | 0.292654 | 8.3:-25820320 | None:intergenic |
| CATCGACGTATCAGCCTAAA+AGG | 0.297552 | 8.3:-25819820 | None:intergenic |
| CATTCAGGACGAGGATATAC+TGG | 0.299155 | 8.3:+25817122 | MS.gene87384:CDS |
| CGAGGATATACTGGGAAATA+TGG | 0.301890 | 8.3:+25817131 | MS.gene87384:CDS |
| GTCCTCTGGTTTCAGGTAAA+TGG | 0.302701 | 8.3:-25819609 | None:intergenic |
| AAGCAAAGTCCTCTGGTTTC+AGG | 0.302816 | 8.3:-25819616 | None:intergenic |
| GCAGCAAATTCCTATGCTTT+TGG | 0.308444 | 8.3:+25819405 | MS.gene87384:CDS |
| AACTTCCGGTCATTCGGATA+TGG | 0.336770 | 8.3:-25820610 | None:intergenic |
| TCATTACAGTATTCCATGTC+TGG | 0.337779 | 8.3:+25818476 | MS.gene87384:intron |
| GGCGAAAAGAGGTTTGTAAA+AGG | 0.349058 | 8.3:-25817906 | None:intergenic |
| ACCAAGTTCCTTCTCAAAAT+CGG | 0.357058 | 8.3:-25820480 | None:intergenic |
| TGATGATGCTTCTTCACTTC+CGG | 0.357113 | 8.3:-25820390 | None:intergenic |
| TTACCATAAATTATGCTATA+AGG | 0.387755 | 8.3:+25818508 | MS.gene87384:CDS |
| GTTCGAACCCTTTAGAAACT+TGG | 0.408812 | 8.3:-25817093 | None:intergenic |
| TGCTTCTTCACTTCCGGAGC+CGG | 0.411249 | 8.3:-25820384 | None:intergenic |
| TTAGATTCAGAGATCTATTC+CGG | 0.411303 | 8.3:+25820365 | MS.gene87384:CDS |
| GGTTCGAACCATAAACATTC+AGG | 0.417018 | 8.3:+25817107 | MS.gene87384:CDS |
| CTGGCTTACCAAGTTTCTAA+AGG | 0.419265 | 8.3:+25817085 | MS.gene87384:CDS |
| GTTACAGAGGAAGATCATAA+AGG | 0.421978 | 8.3:+25817366 | MS.gene87384:CDS |
| GTGAGCTATCTGTCTCAATC+TGG | 0.433359 | 8.3:-25820517 | None:intergenic |
| ATGGAAAACTTCCGGTCATT+CGG | 0.433899 | 8.3:-25820616 | None:intergenic |
| TCGCATAGTTACCTGTATAC+AGG | 0.438440 | 8.3:-25817927 | None:intergenic |
| GCTGGCTGCAATGCCGAGAT+TGG | 0.442433 | 8.3:+25818207 | MS.gene87384:CDS |
| TTCTGACAAGCAAAGTCCTC+TGG | 0.446916 | 8.3:-25819623 | None:intergenic |
| TGGCTTACCAAGTTTCTAAA+GGG | 0.451933 | 8.3:+25817086 | MS.gene87384:CDS |
| TTACAGAGGAAGATCATAAA+GGG | 0.469977 | 8.3:+25817367 | MS.gene87384:CDS |
| GAAAATAAGATTGTATGGGC+TGG | 0.473993 | 8.3:+25817066 | None:intergenic |
| ATTTCATTATGGAAAACTTC+CGG | 0.475409 | 8.3:-25820624 | None:intergenic |
| TTCCTCTACATCTTCAAAGA+AGG | 0.477132 | 8.3:+25820448 | MS.gene87384:CDS |
| CGAACCTCGTAATCAGTGAT+TGG | 0.478079 | 8.3:-25818303 | None:intergenic |
| CATCTTCAAAGAAGGGTAAA+CGG | 0.478692 | 8.3:+25820456 | MS.gene87384:CDS |
| AAGGCCATACAAAACAAGTA+TGG | 0.479856 | 8.3:-25819854 | None:intergenic |
| AGGAAGATGAACAACTTGCC+AGG | 0.481242 | 8.3:+25817820 | MS.gene87384:CDS |
| CTCATGAAATGATGCATGCT+TGG | 0.482818 | 8.3:+25820177 | MS.gene87384:CDS |
| TGATTGGAAGTTTGCAAGCA+TGG | 0.482821 | 8.3:-25818287 | None:intergenic |
| CAAACTTTCTTGAATTGCCC+TGG | 0.485539 | 8.3:-25817838 | None:intergenic |
| CCATGTTGCTAAAATTCAAC+AGG | 0.488050 | 8.3:+25817764 | MS.gene87384:CDS |
| CGGTAGCCTGCTCCTATACT+TGG | 0.493239 | 8.3:-25819775 | None:intergenic |
| GTATTTCAAGATAGAGAGGT+TGG | 0.497395 | 8.3:-25819348 | None:intergenic |
| TCAGAGATCTATTCCGGCTC+CGG | 0.497689 | 8.3:+25820371 | MS.gene87384:CDS |
| TGAGTTGCATGGGAGCTGTA+TGG | 0.499390 | 8.3:+25818244 | MS.gene87384:CDS |
| TTATAGCATAATTTATGGTA+AGG | 0.500224 | 8.3:-25818506 | None:intergenic |
| GTGCCATCGCGCTCGTGTGA+TGG | 0.502362 | 8.3:-25819082 | None:intergenic |
| GTGTCTTGAGTGTCTCGATT+CGG | 0.506058 | 8.3:+25819303 | MS.gene87384:CDS |
| ACAGATAGCTCACCAGCCTA+TGG | 0.509351 | 8.3:+25820527 | MS.gene87384:CDS |
| GCCCATACTTGAGCACTGCC+TGG | 0.512523 | 8.3:-25820571 | None:intergenic |
| ATATGGACACGACAGAGATT+CGG | 0.513953 | 8.3:+25817148 | MS.gene87384:CDS |
| TATATTTATAGGTTACTGAC+AGG | 0.516589 | 8.3:+25820143 | MS.gene87384:intron |
| TGGATTTAGAGAGGGTAACC+AGG | 0.516593 | 8.3:+25820553 | MS.gene87384:CDS |
| CAGATCCCACAAAATTCAGC+TGG | 0.520653 | 8.3:+25819013 | MS.gene87384:intron |
| TTGTTGTAGCTGTCAAAGAA+TGG | 0.521248 | 8.3:+25819111 | MS.gene87384:CDS |
| CATTACAGTATTCCATGTCT+GGG | 0.527623 | 8.3:+25818477 | MS.gene87384:intron |
| AAACCTTCCATGGCCAATCT+CGG | 0.530954 | 8.3:-25818220 | None:intergenic |
| CTAAATCCATCTCCATAGGC+TGG | 0.535720 | 8.3:-25820539 | None:intergenic |
| AGCTCACCAGCCTATGGAGA+TGG | 0.537937 | 8.3:+25820533 | MS.gene87384:CDS |
| CTGAGGCCTGAAGTTGAAGA+AGG | 0.538408 | 8.3:+25820314 | MS.gene87384:CDS |
| CATGCATCATTTCATGAGCT+AGG | 0.540468 | 8.3:-25820172 | None:intergenic |
| ACCTGTATACAGGCGAAAAG+AGG | 0.540632 | 8.3:-25817917 | None:intergenic |
| AGGAGACCAAGTATAGGAGC+AGG | 0.541257 | 8.3:+25819769 | MS.gene87384:CDS |
| TCTTGCAAACATCACACCTT+GGG | 0.542837 | 8.3:-25818541 | None:intergenic |
| TGCTCAAGTATGGGCTTAGA+CGG | 0.544906 | 8.3:+25820579 | MS.gene87384:CDS |
| AGAAGGAATATGCCAAGTCT+TGG | 0.551472 | 8.3:+25820331 | MS.gene87384:CDS |
| ACCACATATGAGCCAAGACT+TGG | 0.555232 | 8.3:-25820343 | None:intergenic |
| GCTGATGTTGAACAAAATGA+AGG | 0.556484 | 8.3:+25817738 | MS.gene87384:CDS |
| ATGCCGAGATTGGCCATGGA+AGG | 0.556967 | 8.3:+25818217 | MS.gene87384:CDS |
| ACCAGGCAGTGCTCAAGTAT+GGG | 0.557753 | 8.3:+25820570 | MS.gene87384:CDS |
| ACCCTTCTTTGAAGATGTAG+AGG | 0.559513 | 8.3:-25820450 | None:intergenic |
| TCCTCTACATCTTCAAAGAA+GGG | 0.564606 | 8.3:+25820449 | MS.gene87384:CDS |
| GCCAAGTCTTGGCTCATATG+TGG | 0.565359 | 8.3:+25820342 | MS.gene87384:CDS |
| CTTGACCATATCCGAATGAC+CGG | 0.569122 | 8.3:+25820605 | MS.gene87384:CDS |
| TGTGCTTGCAGAATCTGTGC+TGG | 0.570167 | 8.3:+25818189 | MS.gene87384:intron |
| CTCTCTAAATCCATCTCCAT+AGG | 0.573587 | 8.3:-25820543 | None:intergenic |
| ATCTTGCAAACATCACACCT+TGG | 0.577586 | 8.3:-25818542 | None:intergenic |
| TTCTTTGAAGATGTAGAGGA+AGG | 0.578442 | 8.3:-25820446 | None:intergenic |
| TCTTTCAGAGGTTACAGAGG+AGG | 0.581657 | 8.3:+25817344 | MS.gene87384:CDS |
| AAGTATCTGTTGCTTGATGA+CGG | 0.585206 | 8.3:+25819271 | MS.gene87384:CDS |
| TCTTGTATTTCAAGATAGAG+AGG | 0.585747 | 8.3:-25819352 | None:intergenic |
| ATTCAAGAAAGTTTGAGCGT+TGG | 0.587908 | 8.3:+25817846 | MS.gene87384:CDS |
| TGCAATGCCGAGATTGGCCA+TGG | 0.592397 | 8.3:+25818213 | MS.gene87384:CDS |
| GAATCAGTTTGAGACGGAGG+AGG | 0.593085 | 8.3:-25817873 | None:intergenic |
| AATTGCGATCTCTCTTTCAG+AGG | 0.593587 | 8.3:+25817332 | MS.gene87384:CDS |
| TGTCTCTCAACCAAAAGCAT+AGG | 0.601813 | 8.3:-25819415 | None:intergenic |
| ACAAGCACTAAATGAAGCCA+TGG | 0.603423 | 8.3:+25819435 | MS.gene87384:CDS |
| CTCTCTTTCAGAGGTTACAG+AGG | 0.604714 | 8.3:+25817341 | MS.gene87384:CDS |
| ATCTTAAGGAGACCAAGTAT+AGG | 0.604792 | 8.3:+25819763 | MS.gene87384:CDS |
| AATATAGAATCAGTTTGAGA+CGG | 0.606429 | 8.3:-25817879 | None:intergenic |
| CGACAGGCTATGGGAATCTG+AGG | 0.609358 | 8.3:+25820297 | MS.gene87384:intron |
| AGATTCTGAATCTGAAGATG+AGG | 0.610392 | 8.3:+25817677 | MS.gene87384:CDS |
| TCATCTTCCTCGTCATCAAG+TGG | 0.612402 | 8.3:-25817708 | None:intergenic |
| ATAAGGAGCTGCATCACCCA+AGG | 0.612966 | 8.3:+25818525 | MS.gene87384:CDS |
| CTATGGAGATGGATTTAGAG+AGG | 0.615579 | 8.3:+25820544 | MS.gene87384:CDS |
| CTGATGTTGAACAAAATGAA+GGG | 0.615941 | 8.3:+25817739 | MS.gene87384:CDS |
| GTAAGGACGATTCCCAGACA+TGG | 0.624532 | 8.3:-25818489 | None:intergenic |
| GGAAGATGAACAACTTGCCA+GGG | 0.625754 | 8.3:+25817821 | MS.gene87384:CDS |
| CAGTTATCATATCGATGACA+CGG | 0.628026 | 8.3:-25819795 | None:intergenic |
| AACCATAAACATTCAGGACG+AGG | 0.628809 | 8.3:+25817113 | MS.gene87384:CDS |
| ATTCAGGACGAGGATATACT+GGG | 0.630545 | 8.3:+25817123 | MS.gene87384:CDS |
| TGTTGACGAAGTTCAACTTG+AGG | 0.636560 | 8.3:+25817800 | MS.gene87384:CDS |
| TATGGAGATGGATTTAGAGA+GGG | 0.638780 | 8.3:+25820545 | MS.gene87384:CDS |
| TATCAGAAGGATACCTAGGA+AGG | 0.638978 | 8.3:-25819873 | None:intergenic |
| GGTTACAGAGGAGGTTACAG+AGG | 0.639025 | 8.3:+25817353 | MS.gene87384:CDS |
| GATGTGCTCTATACTCAATG+AGG | 0.649586 | 8.3:-25819036 | None:intergenic |
| ATAGAATCAGTTTGAGACGG+AGG | 0.651123 | 8.3:-25817876 | None:intergenic |
| ACTTCCAATCACTGATTACG+AGG | 0.658587 | 8.3:+25818299 | MS.gene87384:CDS |
| GCACTAAATGAAGCCATGGA+GGG | 0.659884 | 8.3:+25819439 | MS.gene87384:CDS |
| TGTCCATCACACGAGCGCGA+TGG | 0.661781 | 8.3:+25819079 | MS.gene87384:CDS |
| AGCACTAAATGAAGCCATGG+AGG | 0.665183 | 8.3:+25819438 | MS.gene87384:CDS |
| TTGTAGCTGTCAAAGAATGG+AGG | 0.683641 | 8.3:+25819114 | MS.gene87384:CDS |
| GTTGTGTCCACTTGATGACG+AGG | 0.696227 | 8.3:+25817701 | MS.gene87384:CDS |
| CACCATTTACCTGAAACCAG+AGG | 0.704277 | 8.3:+25819607 | MS.gene87384:CDS |
| TGATGTTGAACAAAATGAAG+GGG | 0.704807 | 8.3:+25817740 | MS.gene87384:CDS |
| CTTTGACAGCTACAACAACG+AGG | 0.719508 | 8.3:-25819106 | None:intergenic |
| GGATAATCATGATAATACCG+CGG | 0.766773 | 8.3:+25817169 | MS.gene87384:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTAATATATTATATAAA+GGG | - | chr8.3:25818975-25818994 | None:intergenic | 0.0% |
| !! | AGTATTATTTACAATAATAT+TGG | - | chr8.3:25818445-25818464 | None:intergenic | 10.0% |
| !! | ATATTATTGTAAATAATACT+TGG | + | chr8.3:25818445-25818464 | MS.gene87384:intron | 10.0% |
| !! | CTAATCAAATATTTATAAAA+TGG | - | chr8.3:25817574-25817593 | None:intergenic | 10.0% |
| !! | TATAAATATTTGATTAGAAA+AGG | + | chr8.3:25817577-25817596 | MS.gene87384:intron | 10.0% |
| !! | AAAGTTTAAATAAGTAGATA+TGG | - | chr8.3:25818369-25818388 | None:intergenic | 15.0% |
| !! | AAGTTTAAATAAGTAGATAT+GGG | - | chr8.3:25818368-25818387 | None:intergenic | 15.0% |
| !! | ATTTCATATCAATTAATGAA+AGG | - | chr8.3:25819223-25819242 | None:intergenic | 15.0% |
| !! | TACTTATTTAAACTTTCTTT+AGG | + | chr8.3:25818373-25818392 | MS.gene87384:intron | 15.0% |
| !!! | ATGTTGAAAATTTTATATTC+CGG | + | chr8.3:25820242-25820261 | MS.gene87384:intron | 15.0% |
| !!! | ATTTTTTCAATATTGATTGT+AGG | + | chr8.3:25819576-25819595 | MS.gene87384:intron | 15.0% |
| !!! | TTCAAGGATTTTATATTTAT+AGG | + | chr8.3:25820132-25820151 | MS.gene87384:intron | 15.0% |
| !!! | TTTTCATAATTACTTTTAGA+AGG | + | chr8.3:25818720-25818739 | MS.gene87384:intron | 15.0% |
| !!! | TTTTTTCAATATTGATTGTA+GGG | + | chr8.3:25819577-25819596 | MS.gene87384:intron | 15.0% |
| !! | ATACATTGAAGAGAAATAAA+AGG | - | chr8.3:25819514-25819533 | None:intergenic | 20.0% |
| !! | TAAGACAAGAAAGAAAAAAA+TGG | - | chr8.3:25819899-25819918 | None:intergenic | 20.0% |
| !! | TCAATATTGAAAAAATCCAA+AGG | - | chr8.3:25819572-25819591 | None:intergenic | 20.0% |
| !! | TTACCATAAATTATGCTATA+AGG | + | chr8.3:25818508-25818527 | MS.gene87384:CDS | 20.0% |
| !! | TTATAGCATAATTTATGGTA+AGG | - | chr8.3:25818509-25818528 | None:intergenic | 20.0% |
| !!! | TTGCTTAGAACATATATTTT+AGG | - | chr8.3:25817496-25817515 | None:intergenic | 20.0% |
| !!! | TTTCTACGATTTTACATATT+AGG | - | chr8.3:25818047-25818066 | None:intergenic | 20.0% |
| ! | AACAGGTATTAGTATGTATT+AGG | + | chr8.3:25818828-25818847 | MS.gene87384:intron | 25.0% |
| ! | AACATGATTGCAATAATCAT+TGG | - | chr8.3:25819985-25820004 | None:intergenic | 25.0% |
| ! | AAGAAAAAAATGGTATCAGA+AGG | - | chr8.3:25819889-25819908 | None:intergenic | 25.0% |
| ! | AATATAGAATCAGTTTGAGA+CGG | - | chr8.3:25817882-25817901 | None:intergenic | 25.0% |
| ! | ATCACTGCATATGATAAAAA+GGG | + | chr8.3:25818010-25818029 | MS.gene87384:intron | 25.0% |
| ! | CATAAAGGGAAAAAAGTTAT+CGG | + | chr8.3:25817381-25817400 | MS.gene87384:CDS | 25.0% |
| ! | GGAATTTCATATTTGTTCAA+TGG | - | chr8.3:25817553-25817572 | None:intergenic | 25.0% |
| ! | TATAGAAATAACCAGTTCTT+AGG | + | chr8.3:25818933-25818952 | MS.gene87384:intron | 25.0% |
| ! | TATATTTATAGGTTACTGAC+AGG | + | chr8.3:25820143-25820162 | MS.gene87384:intron | 25.0% |
| ! | TCTTTAGCAAATTCGATATA+TGG | - | chr8.3:25817991-25818010 | None:intergenic | 25.0% |
| ! | TGATAAAAAGGGAAAATGAT+TGG | + | chr8.3:25818021-25818040 | MS.gene87384:intron | 25.0% |
| ! | TTGTTGAGCATAAAAATAGA+TGG | - | chr8.3:25820083-25820102 | None:intergenic | 25.0% |
| ! | TTTATATTCCGGTATTAAGT+TGG | + | chr8.3:25820253-25820272 | MS.gene87384:intron | 25.0% |
| ! | TTTGTGTAACATTGTTTGAA+TGG | + | chr8.3:25817444-25817463 | MS.gene87384:intron | 25.0% |
| !! | AGTTTCTTTTATAGACAAAC+AGG | + | chr8.3:25818811-25818830 | MS.gene87384:intron | 25.0% |
| !! | ATTGCAATTTAGAATTTGGT+CGG | + | chr8.3:25819943-25819962 | MS.gene87384:intron | 25.0% |
| !! | GAAATACAAGAATTTTACGA+AGG | + | chr8.3:25819364-25819383 | MS.gene87384:CDS | 25.0% |
| !! | GATCATTGCAATTTAGAATT+TGG | + | chr8.3:25819939-25819958 | MS.gene87384:intron | 25.0% |
| !! | TCAAACAATTTGTTCTTAAC+TGG | + | chr8.3:25820021-25820040 | MS.gene87384:intron | 25.0% |
| !! | TTTTGTAATTCCAGATCTTA+AGG | + | chr8.3:25819749-25819768 | MS.gene87384:intron | 25.0% |
| !!! | CTAAAAAGTTTGCTTTTCAT+AGG | + | chr8.3:25818118-25818137 | MS.gene87384:intron | 25.0% |
| !!! | GAACATATATTTTAGGTATC+CGG | - | chr8.3:25817489-25817508 | None:intergenic | 25.0% |
| !!! | TAATGTTTAGTTCTTTTCAC+AGG | + | chr8.3:25818779-25818798 | MS.gene87384:intron | 25.0% |
| !!! | TTCAACATTGTTTTGATCAT+TGG | - | chr8.3:25820230-25820249 | None:intergenic | 25.0% |
| AAGTAAAACATCCTTACAGT+GGG | - | chr8.3:25819661-25819680 | None:intergenic | 30.0% | |
| ATACTTGCATATGAAATCTG+CGG | + | chr8.3:25820102-25820121 | MS.gene87384:intron | 30.0% | |
| CTGATGTTGAACAAAATGAA+GGG | + | chr8.3:25817739-25817758 | MS.gene87384:CDS | 30.0% | |
| GATCACTGCATATGATAAAA+AGG | + | chr8.3:25818009-25818028 | MS.gene87384:intron | 30.0% | |
| GCTCCTTATAGCATAATTTA+TGG | - | chr8.3:25818514-25818533 | None:intergenic | 30.0% | |
| TCTTGTATTTCAAGATAGAG+AGG | - | chr8.3:25819355-25819374 | None:intergenic | 30.0% | |
| TGAAAACAGATCAAAGTCAA+TGG | - | chr8.3:25818706-25818725 | None:intergenic | 30.0% | |
| TGATGTTGAACAAAATGAAG+GGG | + | chr8.3:25817740-25817759 | MS.gene87384:CDS | 30.0% | |
| TTACAGAGGAAGATCATAAA+GGG | + | chr8.3:25817367-25817386 | MS.gene87384:CDS | 30.0% | |
| TTAGATTCAGAGATCTATTC+CGG | + | chr8.3:25820365-25820384 | MS.gene87384:CDS | 30.0% | |
| ! | AATTAGTGTTTTCTGTGTAC+CGG | + | chr8.3:25817467-25817486 | MS.gene87384:intron | 30.0% |
| ! | AGATTTATGCTTTTGCAAGA+CGG | + | chr8.3:25817406-25817425 | MS.gene87384:intron | 30.0% |
| ! | ATATGATAACTGAGCCTTTT+AGG | + | chr8.3:25819806-25819825 | MS.gene87384:CDS | 30.0% |
| ! | CTTTTTAGATGTCTACTATC+TGG | - | chr8.3:25818106-25818125 | None:intergenic | 30.0% |
| ! | TGCACAGTATTGAAAAATCA+CGG | - | chr8.3:25818882-25818901 | None:intergenic | 30.0% |
| !! | GATGTTTTTAAACACTTCAC+CGG | - | chr8.3:25817619-25817638 | None:intergenic | 30.0% |
| !!! | AGAAAAGGTTACCTCTTTTT+TGG | + | chr8.3:25817592-25817611 | MS.gene87384:intron | 30.0% |
| !!! | CATTGTTTTGATCATTGGAA+TGG | - | chr8.3:25820225-25820244 | None:intergenic | 30.0% |
| !!! | GAAAAGGTTACCTCTTTTTT+GGG | + | chr8.3:25817593-25817612 | MS.gene87384:intron | 30.0% |
| !!! | TTGCAGTAAACGTTTTTAGT+CGG | - | chr8.3:25818167-25818186 | None:intergenic | 30.0% |
| AAGGCCATACAAAACAAGTA+TGG | - | chr8.3:25819857-25819876 | None:intergenic | 35.0% | |
| ACCAAGTTCCTTCTCAAAAT+CGG | - | chr8.3:25820483-25820502 | None:intergenic | 35.0% | |
| AGATGGTAACTCAAGTGATT+TGG | - | chr8.3:25820066-25820085 | None:intergenic | 35.0% | |
| AGATTCTGAATCTGAAGATG+AGG | + | chr8.3:25817677-25817696 | MS.gene87384:CDS | 35.0% | |
| AGCATAAACTGTTATTACCG+CGG | - | chr8.3:25817189-25817208 | None:intergenic | 35.0% | |
| AGTAAAACATCCTTACAGTG+GGG | - | chr8.3:25819660-25819679 | None:intergenic | 35.0% | |
| ATCTTAAGGAGACCAAGTAT+AGG | + | chr8.3:25819763-25819782 | MS.gene87384:CDS | 35.0% | |
| ATTCAAGAAAGTTTGAGCGT+TGG | + | chr8.3:25817846-25817865 | MS.gene87384:CDS | 35.0% | |
| ATTTCACTACATTATGTGCG+AGG | + | chr8.3:25818676-25818695 | MS.gene87384:intron | 35.0% | |
| CAAGTAAAACATCCTTACAG+TGG | - | chr8.3:25819662-25819681 | None:intergenic | 35.0% | |
| CAGTTATCATATCGATGACA+CGG | - | chr8.3:25819798-25819817 | None:intergenic | 35.0% | |
| CATATTCCTTCTTCAACTTC+AGG | - | chr8.3:25820323-25820342 | None:intergenic | 35.0% | |
| CATCTTCAAAGAAGGGTAAA+CGG | + | chr8.3:25820456-25820475 | MS.gene87384:CDS | 35.0% | |
| CATTACAGTATTCCATGTCT+GGG | + | chr8.3:25818477-25818496 | MS.gene87384:intron | 35.0% | |
| CCATGTTGCTAAAATTCAAC+AGG | + | chr8.3:25817764-25817783 | MS.gene87384:CDS | 35.0% | |
| GAGATTGTCCAACTTAATAC+CGG | - | chr8.3:25820264-25820283 | None:intergenic | 35.0% | |
| GATTCAGAATCTTCTTCTGA+AGG | - | chr8.3:25817669-25817688 | None:intergenic | 35.0% | |
| GCTGATGTTGAACAAAATGA+AGG | + | chr8.3:25817738-25817757 | MS.gene87384:CDS | 35.0% | |
| GGATAATCATGATAATACCG+CGG | + | chr8.3:25817169-25817188 | MS.gene87384:CDS | 35.0% | |
| GTATTTCAAGATAGAGAGGT+TGG | - | chr8.3:25819351-25819370 | None:intergenic | 35.0% | |
| GTTACAGAGGAAGATCATAA+AGG | + | chr8.3:25817366-25817385 | MS.gene87384:CDS | 35.0% | |
| TCATTACAGTATTCCATGTC+TGG | + | chr8.3:25818476-25818495 | MS.gene87384:intron | 35.0% | |
| TCCTCTACATCTTCAAAGAA+GGG | + | chr8.3:25820449-25820468 | MS.gene87384:CDS | 35.0% | |
| TGATGTCATAACCTAAGAAC+TGG | - | chr8.3:25818947-25818966 | None:intergenic | 35.0% | |
| TGGCTTACCAAGTTTCTAAA+GGG | + | chr8.3:25817086-25817105 | MS.gene87384:CDS | 35.0% | |
| TTCCTCTACATCTTCAAAGA+AGG | + | chr8.3:25820448-25820467 | MS.gene87384:CDS | 35.0% | |
| TTGTTGTAGCTGTCAAAGAA+TGG | + | chr8.3:25819111-25819130 | MS.gene87384:CDS | 35.0% | |
| TTTGTCAATTCTGTTGTGCT+TGG | + | chr8.3:25818612-25818631 | MS.gene87384:intron | 35.0% | |
| ! | AAGTATCTGTTGCTTGATGA+CGG | + | chr8.3:25819271-25819290 | MS.gene87384:CDS | 35.0% |
| ! | ATCATGTGTTATTGCCAACA+AGG | + | chr8.3:25819163-25819182 | MS.gene87384:intron | 35.0% |
| ! | TATGGAGATGGATTTAGAGA+GGG | + | chr8.3:25820545-25820564 | MS.gene87384:CDS | 35.0% |
| ! | TCTTTCTACTGTCCTGATTT+TGG | + | chr8.3:25819541-25819560 | MS.gene87384:intron | 35.0% |
| ! | TTCTTTGAAGATGTAGAGGA+AGG | - | chr8.3:25820449-25820468 | None:intergenic | 35.0% |
| !! | CAGTATTTTTGTAGCCAGAA+AGG | - | chr8.3:25819061-25819080 | None:intergenic | 35.0% |
| !! | CCTGTTGAATTTTAGCAACA+TGG | - | chr8.3:25817767-25817786 | None:intergenic | 35.0% |
| !! | CTCTTCTGTTTATTTTCGAC+AGG | + | chr8.3:25820281-25820300 | MS.gene87384:intron | 35.0% |
| !! | GTTTATTTTCGACAGGCTAT+GGG | + | chr8.3:25820288-25820307 | MS.gene87384:intron | 35.0% |
| !! | TGTTTATTTTCGACAGGCTA+TGG | + | chr8.3:25820287-25820306 | MS.gene87384:intron | 35.0% |
| !!! | ACAGCCATACTTGTTTTGTA+TGG | + | chr8.3:25819850-25819869 | MS.gene87384:CDS | 35.0% |
| AACCATAAACATTCAGGACG+AGG | + | chr8.3:25817113-25817132 | MS.gene87384:CDS | 40.0% | |
| AACTGAAATAGCCACCTCTA+TGG | + | chr8.3:25818067-25818086 | MS.gene87384:intron | 40.0% | |
| AATCTGCGGTAGATGATTCA+AGG | + | chr8.3:25820116-25820135 | MS.gene87384:intron | 40.0% | |
| AATTGCGATCTCTCTTTCAG+AGG | + | chr8.3:25817332-25817351 | MS.gene87384:CDS | 40.0% | |
| ACAAGCACTAAATGAAGCCA+TGG | + | chr8.3:25819435-25819454 | MS.gene87384:CDS | 40.0% | |
| AGAAGGAATATGCCAAGTCT+TGG | + | chr8.3:25820331-25820350 | MS.gene87384:CDS | 40.0% | |
| AGAGACTGAAGTTGCAATAG+TGG | + | chr8.3:25817252-25817271 | MS.gene87384:intron | 40.0% | |
| AGTATAGAGCACATCCTTTC+TGG | + | chr8.3:25819044-25819063 | MS.gene87384:CDS | 40.0% | |
| ATATGGACACGACAGAGATT+CGG | + | chr8.3:25817148-25817167 | MS.gene87384:CDS | 40.0% | |
| ATCCTCGTCCTGAATGTTTA+TGG | - | chr8.3:25817118-25817137 | None:intergenic | 40.0% | |
| ATCTTGCAAACATCACACCT+TGG | - | chr8.3:25818545-25818564 | None:intergenic | 40.0% | |
| ATGGAAAACTTCCGGTCATT+CGG | - | chr8.3:25820619-25820638 | None:intergenic | 40.0% | |
| ATGGTATCAGAAGGATACCT+AGG | - | chr8.3:25819880-25819899 | None:intergenic | 40.0% | |
| ATTCAGGACGAGGATATACT+GGG | + | chr8.3:25817123-25817142 | MS.gene87384:CDS | 40.0% | |
| CAAACTTTCTTGAATTGCCC+TGG | - | chr8.3:25817841-25817860 | None:intergenic | 40.0% | |
| CATGCATCATTTCATGAGCT+AGG | - | chr8.3:25820175-25820194 | None:intergenic | 40.0% | |
| CATGCTTGGCTTAGACTTAA+AGG | + | chr8.3:25820191-25820210 | MS.gene87384:CDS | 40.0% | |
| CCAAAGGACAATCCAAAATC+AGG | - | chr8.3:25819556-25819575 | None:intergenic | 40.0% | |
| CGAGGATATACTGGGAAATA+TGG | + | chr8.3:25817131-25817150 | MS.gene87384:CDS | 40.0% | |
| CTCATGAAATGATGCATGCT+TGG | + | chr8.3:25820177-25820196 | MS.gene87384:CDS | 40.0% | |
| CTCTCTAAATCCATCTCCAT+AGG | - | chr8.3:25820546-25820565 | None:intergenic | 40.0% | |
| CTGGCTTACCAAGTTTCTAA+AGG | + | chr8.3:25817085-25817104 | MS.gene87384:CDS | 40.0% | |
| GATCTATGTTGTCACCATAG+AGG | - | chr8.3:25818084-25818103 | None:intergenic | 40.0% | |
| GATGTGCTCTATACTCAATG+AGG | - | chr8.3:25819039-25819058 | None:intergenic | 40.0% | |
| GCATGGCAACAAAAACATTC+TGG | - | chr8.3:25818273-25818292 | None:intergenic | 40.0% | |
| GGCGAAAAGAGGTTTGTAAA+AGG | - | chr8.3:25817909-25817928 | None:intergenic | 40.0% | |
| GGTTCGAACCATAAACATTC+AGG | + | chr8.3:25817107-25817126 | MS.gene87384:CDS | 40.0% | |
| TACTTGGTCTCCTTAAGATC+TGG | - | chr8.3:25819762-25819781 | None:intergenic | 40.0% | |
| TAGTGGCAAATTCTGAGTGT+AGG | + | chr8.3:25817269-25817288 | MS.gene87384:intron | 40.0% | |
| TATCAGAAGGATACCTAGGA+AGG | - | chr8.3:25819876-25819895 | None:intergenic | 40.0% | |
| TCGCATAGTTACCTGTATAC+AGG | - | chr8.3:25817930-25817949 | None:intergenic | 40.0% | |
| TCTTGCAAACATCACACCTT+GGG | - | chr8.3:25818544-25818563 | None:intergenic | 40.0% | |
| TGATTGGAAGTTTGCAAGCA+TGG | - | chr8.3:25818290-25818309 | None:intergenic | 40.0% | |
| TGCAACTCAAAAACCTTCCA+TGG | - | chr8.3:25818233-25818252 | None:intergenic | 40.0% | |
| TGTCTTAACCGTCTGTTTCA+GGG | + | chr8.3:25819912-25819931 | MS.gene87384:intron | 40.0% | |
| TGTTGACGAAGTTCAACTTG+AGG | + | chr8.3:25817800-25817819 | MS.gene87384:CDS | 40.0% | |
| TTCGTTGTTGAACGCTAACA+TGG | + | chr8.3:25818335-25818354 | MS.gene87384:intron | 40.0% | |
| TTGTAGCTGTCAAAGAATGG+AGG | + | chr8.3:25819114-25819133 | MS.gene87384:CDS | 40.0% | |
| TTGTCTTAACCGTCTGTTTC+AGG | + | chr8.3:25819911-25819930 | MS.gene87384:intron | 40.0% | |
| TTTCCAATCAGTGCAGTCAA+CGG | + | chr8.3:25819243-25819262 | MS.gene87384:intron | 40.0% | |
| ! | ACCCTTCTTTGAAGATGTAG+AGG | - | chr8.3:25820453-25820472 | None:intergenic | 40.0% |
| ! | ACTTCCAATCACTGATTACG+AGG | + | chr8.3:25818299-25818318 | MS.gene87384:CDS | 40.0% |
| ! | ATAGAATCAGTTTGAGACGG+AGG | - | chr8.3:25817879-25817898 | None:intergenic | 40.0% |
| ! | CCTGATTTTGGATTGTCCTT+TGG | + | chr8.3:25819553-25819572 | MS.gene87384:intron | 40.0% |
| ! | CTATGGAGATGGATTTAGAG+AGG | + | chr8.3:25820544-25820563 | MS.gene87384:CDS | 40.0% |
| ! | GCAGCAAATTCCTATGCTTT+TGG | + | chr8.3:25819405-25819424 | MS.gene87384:CDS | 40.0% |
| ! | GTTCGAACCCTTTAGAAACT+TGG | - | chr8.3:25817096-25817115 | None:intergenic | 40.0% |
| ! | TGATGATGCTTCTTCACTTC+CGG | - | chr8.3:25820393-25820412 | None:intergenic | 40.0% |
| ! | TGTCTCTCAACCAAAAGCAT+AGG | - | chr8.3:25819418-25819437 | None:intergenic | 40.0% |
| ! | TTTATGCTTTTGCAAGACGG+TGG | + | chr8.3:25817409-25817428 | MS.gene87384:intron | 40.0% |
| !! | TAAACGGTCCGATTTTGAGA+AGG | + | chr8.3:25820472-25820491 | MS.gene87384:CDS | 40.0% |
| !! | TCCGATTTTGAGAAGGAACT+TGG | + | chr8.3:25820479-25820498 | MS.gene87384:CDS | 40.0% |
| !! | TTGTTTTGTATGGCCTTCCT+AGG | + | chr8.3:25819860-25819879 | MS.gene87384:CDS | 40.0% |
| !!! | GGAAGGTTTTTGAGTTGCAT+GGG | + | chr8.3:25818234-25818253 | MS.gene87384:CDS | 40.0% |
| !!! | TGGAAGGTTTTTGAGTTGCA+TGG | + | chr8.3:25818233-25818252 | MS.gene87384:CDS | 40.0% |
| AAACCTTCCATGGCCAATCT+CGG | - | chr8.3:25818223-25818242 | None:intergenic | 45.0% | |
| AACTTCCGGTCATTCGGATA+TGG | - | chr8.3:25820613-25820632 | None:intergenic | 45.0% | |
| ACCACATATGAGCCAAGACT+TGG | - | chr8.3:25820346-25820365 | None:intergenic | 45.0% | |
| ACCTGTATACAGGCGAAAAG+AGG | - | chr8.3:25817920-25817939 | None:intergenic | 45.0% | |
| AGCACTAAATGAAGCCATGG+AGG | + | chr8.3:25819438-25819457 | MS.gene87384:CDS | 45.0% | |
| AGGAAGATGAACAACTTGCC+AGG | + | chr8.3:25817820-25817839 | MS.gene87384:CDS | 45.0% | |
| CACCATTTACCTGAAACCAG+AGG | + | chr8.3:25819607-25819626 | MS.gene87384:CDS | 45.0% | |
| CAGATCCCACAAAATTCAGC+TGG | + | chr8.3:25819013-25819032 | MS.gene87384:intron | 45.0% | |
| CATCGACGTATCAGCCTAAA+AGG | - | chr8.3:25819823-25819842 | None:intergenic | 45.0% | |
| CATTCAGGACGAGGATATAC+TGG | + | chr8.3:25817122-25817141 | MS.gene87384:CDS | 45.0% | |
| CGAACCTCGTAATCAGTGAT+TGG | - | chr8.3:25818306-25818325 | None:intergenic | 45.0% | |
| CTAAATCCATCTCCATAGGC+TGG | - | chr8.3:25820542-25820561 | None:intergenic | 45.0% | |
| CTATGTTGTCACCATAGAGG+TGG | - | chr8.3:25818081-25818100 | None:intergenic | 45.0% | |
| CTCTCTTTCAGAGGTTACAG+AGG | + | chr8.3:25817341-25817360 | MS.gene87384:CDS | 45.0% | |
| CTTGACCATATCCGAATGAC+CGG | + | chr8.3:25820605-25820624 | MS.gene87384:CDS | 45.0% | |
| CTTTGACAGCTACAACAACG+AGG | - | chr8.3:25819109-25819128 | None:intergenic | 45.0% | |
| GATAGTGAGTGTCTCCTTGT+TGG | - | chr8.3:25819180-25819199 | None:intergenic | 45.0% | |
| GATCATTCCCCTGAAACAGA+CGG | - | chr8.3:25819923-25819942 | None:intergenic | 45.0% | |
| GCACTAAATGAAGCCATGGA+GGG | + | chr8.3:25819439-25819458 | MS.gene87384:CDS | 45.0% | |
| GGAAGATGAACAACTTGCCA+GGG | + | chr8.3:25817821-25817840 | MS.gene87384:CDS | 45.0% | |
| GTCTTAACCGTCTGTTTCAG+GGG | + | chr8.3:25819913-25819932 | MS.gene87384:intron | 45.0% | |
| GTGAGCTATCTGTCTCAATC+TGG | - | chr8.3:25820520-25820539 | None:intergenic | 45.0% | |
| GTGTCTTGAGTGTCTCGATT+CGG | + | chr8.3:25819303-25819322 | MS.gene87384:CDS | 45.0% | |
| TCATCTTCCTCGTCATCAAG+TGG | - | chr8.3:25817711-25817730 | None:intergenic | 45.0% | |
| TCTTTCAGAGGTTACAGAGG+AGG | + | chr8.3:25817344-25817363 | MS.gene87384:CDS | 45.0% | |
| TGCTCAAGTATGGGCTTAGA+CGG | + | chr8.3:25820579-25820598 | MS.gene87384:CDS | 45.0% | |
| TGGATTTAGAGAGGGTAACC+AGG | + | chr8.3:25820553-25820572 | MS.gene87384:CDS | 45.0% | |
| TGGTCGGAAAGTAAGTGAAG+TGG | + | chr8.3:25819959-25819978 | MS.gene87384:intron | 45.0% | |
| TTCTGACAAGCAAAGTCCTC+TGG | - | chr8.3:25819626-25819645 | None:intergenic | 45.0% | |
| ! | AAGCAAAGTCCTCTGGTTTC+AGG | - | chr8.3:25819619-25819638 | None:intergenic | 45.0% |
| ! | ACCTCTTTTCGCCTGTATAC+AGG | + | chr8.3:25817916-25817935 | MS.gene87384:CDS | 45.0% |
| ! | ATGAGGCCAGCTGAATTTTG+TGG | - | chr8.3:25819022-25819041 | None:intergenic | 45.0% |
| ! | GTCCTCTGGTTTCAGGTAAA+TGG | - | chr8.3:25819612-25819631 | None:intergenic | 45.0% |
| ! | TACATTCTTTTCGCCCTCCA+TGG | - | chr8.3:25819455-25819474 | None:intergenic | 45.0% |
| ! | TATCCGTTGACTGCACTGAT+TGG | - | chr8.3:25819249-25819268 | None:intergenic | 45.0% |
| ! | TGAGGCCAGCTGAATTTTGT+GGG | - | chr8.3:25819021-25819040 | None:intergenic | 45.0% |
| !! | GTGTCTCGATTCGGCTATTA+TGG | + | chr8.3:25819312-25819331 | MS.gene87384:CDS | 45.0% |
| !!! | AGGTTACCTCTTTTTTGGGC+CGG | + | chr8.3:25817597-25817616 | MS.gene87384:intron | 45.0% |
| !! | GATATTAATATATTATATAA+AGG | - | chr8.3:25818976-25818995 | None:intergenic | 5.0% |
| !! | TATTAATATATTATATAAAG+GGG | - | chr8.3:25818974-25818993 | None:intergenic | 5.0% |
| AACCAGGCAGTGCTCAAGTA+TGG | + | chr8.3:25820569-25820588 | MS.gene87384:CDS | 50.0% | |
| ACAGATAGCTCACCAGCCTA+TGG | + | chr8.3:25820527-25820546 | MS.gene87384:CDS | 50.0% | |
| ACCAGGCAGTGCTCAAGTAT+GGG | + | chr8.3:25820570-25820589 | MS.gene87384:CDS | 50.0% | |
| ACTTCACCGGCCCAAAAAAG+AGG | - | chr8.3:25817606-25817625 | None:intergenic | 50.0% | |
| AGCAAACTGTCCCCACTGTA+AGG | + | chr8.3:25819647-25819666 | MS.gene87384:intron | 50.0% | |
| AGGAGACCAAGTATAGGAGC+AGG | + | chr8.3:25819769-25819788 | MS.gene87384:CDS | 50.0% | |
| ATAAGGAGCTGCATCACCCA+AGG | + | chr8.3:25818525-25818544 | MS.gene87384:CDS | 50.0% | |
| CTGAGGCCTGAAGTTGAAGA+AGG | + | chr8.3:25820314-25820333 | MS.gene87384:CDS | 50.0% | |
| GCCAAGTCTTGGCTCATATG+TGG | + | chr8.3:25820342-25820361 | MS.gene87384:CDS | 50.0% | |
| GGTTACAGAGGAGGTTACAG+AGG | + | chr8.3:25817353-25817372 | MS.gene87384:CDS | 50.0% | |
| GTAAGGACGATTCCCAGACA+TGG | - | chr8.3:25818492-25818511 | None:intergenic | 50.0% | |
| TCAGAGATCTATTCCGGCTC+CGG | + | chr8.3:25820371-25820390 | MS.gene87384:CDS | 50.0% | |
| TGAGTTGCATGGGAGCTGTA+TGG | + | chr8.3:25818244-25818263 | MS.gene87384:CDS | 50.0% | |
| TGTGCTTGCAGAATCTGTGC+TGG | + | chr8.3:25818189-25818208 | MS.gene87384:intron | 50.0% | |
| ! | GAATCAGTTTGAGACGGAGG+AGG | - | chr8.3:25817876-25817895 | None:intergenic | 50.0% |
| !! | GTTGTGTCCACTTGATGACG+AGG | + | chr8.3:25817701-25817720 | MS.gene87384:CDS | 50.0% |
| AGCTCACCAGCCTATGGAGA+TGG | + | chr8.3:25820533-25820552 | MS.gene87384:CDS | 55.0% | |
| CGACAGGCTATGGGAATCTG+AGG | + | chr8.3:25820297-25820316 | MS.gene87384:intron | 55.0% | |
| CGGTAGCCTGCTCCTATACT+TGG | - | chr8.3:25819778-25819797 | None:intergenic | 55.0% | |
| TGCTTCTTCACTTCCGGAGC+CGG | - | chr8.3:25820387-25820406 | None:intergenic | 55.0% | |
| ! | ATGCCGAGATTGGCCATGGA+AGG | + | chr8.3:25818217-25818236 | MS.gene87384:CDS | 55.0% |
| ! | TGCAATGCCGAGATTGGCCA+TGG | + | chr8.3:25818213-25818232 | MS.gene87384:CDS | 55.0% |
| GCTGGCTGCAATGCCGAGAT+TGG | + | chr8.3:25818207-25818226 | MS.gene87384:CDS | 60.0% | |
| TGTCCATCACACGAGCGCGA+TGG | + | chr8.3:25819079-25819098 | MS.gene87384:CDS | 60.0% | |
| ! | GCCCATACTTGAGCACTGCC+TGG | - | chr8.3:25820574-25820593 | None:intergenic | 60.0% |
| GTGCCATCGCGCTCGTGTGA+TGG | - | chr8.3:25819085-25819104 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 25817080 | 25820640 | 25817080 | ID=MS.gene87384 |
| chr8.3 | mRNA | 25817080 | 25820640 | 25817080 | ID=MS.gene87384.t1;Parent=MS.gene87384 |
| chr8.3 | exon | 25817080 | 25817190 | 25817080 | ID=MS.gene87384.t1.exon1;Parent=MS.gene87384.t1 |
| chr8.3 | CDS | 25817080 | 25817190 | 25817080 | ID=cds.MS.gene87384.t1;Parent=MS.gene87384.t1 |
| chr8.3 | exon | 25817291 | 25817402 | 25817291 | ID=MS.gene87384.t1.exon2;Parent=MS.gene87384.t1 |
| chr8.3 | CDS | 25817291 | 25817402 | 25817291 | ID=cds.MS.gene87384.t1;Parent=MS.gene87384.t1 |
| chr8.3 | exon | 25817673 | 25817937 | 25817673 | ID=MS.gene87384.t1.exon3;Parent=MS.gene87384.t1 |
| chr8.3 | CDS | 25817673 | 25817937 | 25817673 | ID=cds.MS.gene87384.t1;Parent=MS.gene87384.t1 |
| chr8.3 | exon | 25818200 | 25818320 | 25818200 | ID=MS.gene87384.t1.exon4;Parent=MS.gene87384.t1 |
| chr8.3 | CDS | 25818200 | 25818320 | 25818200 | ID=cds.MS.gene87384.t1;Parent=MS.gene87384.t1 |
| chr8.3 | exon | 25818485 | 25818568 | 25818485 | ID=MS.gene87384.t1.exon5;Parent=MS.gene87384.t1 |
| chr8.3 | CDS | 25818485 | 25818568 | 25818485 | ID=cds.MS.gene87384.t1;Parent=MS.gene87384.t1 |
| chr8.3 | exon | 25819016 | 25819135 | 25819016 | ID=MS.gene87384.t1.exon6;Parent=MS.gene87384.t1 |
| chr8.3 | CDS | 25819016 | 25819135 | 25819016 | ID=cds.MS.gene87384.t1;Parent=MS.gene87384.t1 |
| chr8.3 | exon | 25819259 | 25819471 | 25819259 | ID=MS.gene87384.t1.exon7;Parent=MS.gene87384.t1 |
| chr8.3 | CDS | 25819259 | 25819471 | 25819259 | ID=cds.MS.gene87384.t1;Parent=MS.gene87384.t1 |
| chr8.3 | exon | 25819598 | 25819663 | 25819598 | ID=MS.gene87384.t1.exon8;Parent=MS.gene87384.t1 |
| chr8.3 | CDS | 25819598 | 25819663 | 25819598 | ID=cds.MS.gene87384.t1;Parent=MS.gene87384.t1 |
| chr8.3 | exon | 25819763 | 25819881 | 25819763 | ID=MS.gene87384.t1.exon9;Parent=MS.gene87384.t1 |
| chr8.3 | CDS | 25819763 | 25819881 | 25819763 | ID=cds.MS.gene87384.t1;Parent=MS.gene87384.t1 |
| chr8.3 | exon | 25820154 | 25820212 | 25820154 | ID=MS.gene87384.t1.exon10;Parent=MS.gene87384.t1 |
| chr8.3 | CDS | 25820154 | 25820212 | 25820154 | ID=cds.MS.gene87384.t1;Parent=MS.gene87384.t1 |
| chr8.3 | exon | 25820303 | 25820640 | 25820303 | ID=MS.gene87384.t1.exon11;Parent=MS.gene87384.t1 |
| chr8.3 | CDS | 25820303 | 25820640 | 25820303 | ID=cds.MS.gene87384.t1;Parent=MS.gene87384.t1 |
| Gene Sequence |
| Protein sequence |
