Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88231.t1 | XP_013455822.1 | 99.7 | 353 | 1 | 0 | 7 | 359 | 94 | 446 | 1.30E-198 | 702.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88231.t1 | Q9ASP6 | 54.9 | 359 | 153 | 5 | 4 | 356 | 97 | 452 | 1.3e-111 | 404.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88231.t1 | A0A072ULD6 | 99.7 | 353 | 1 | 0 | 7 | 359 | 94 | 446 | 9.3e-199 | 702.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049166 | MS.gene88231 | 0.819288 | 1.26E-52 | -1.69E-46 |
| MS.gene050114 | MS.gene88231 | 0.802327 | 5.91E-49 | -1.69E-46 |
| MS.gene050317 | MS.gene88231 | 0.83104 | 2.09E-55 | -1.69E-46 |
| MS.gene050654 | MS.gene88231 | 0.83375 | 4.46E-56 | -1.69E-46 |
| MS.gene050838 | MS.gene88231 | 0.815923 | 7.21E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene88231 | 0.835626 | 1.50E-56 | -1.69E-46 |
| MS.gene051233 | MS.gene88231 | 0.802969 | 4.36E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene88231 | 0.803987 | 2.68E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene88231 | 0.823988 | 1.03E-53 | -1.69E-46 |
| MS.gene051975 | MS.gene88231 | 0.83056 | 2.74E-55 | -1.69E-46 |
| MS.gene052434 | MS.gene88231 | 0.841866 | 3.66E-58 | -1.69E-46 |
| MS.gene053058 | MS.gene88231 | 0.829405 | 5.24E-55 | -1.69E-46 |
| MS.gene053167 | MS.gene88231 | 0.806855 | 6.72E-50 | -1.69E-46 |
| MS.gene053381 | MS.gene88231 | 0.812893 | 3.37E-51 | -1.69E-46 |
| MS.gene053895 | MS.gene88231 | -0.803071 | 4.15E-49 | -1.69E-46 |
| MS.gene054823 | MS.gene88231 | 0.815286 | 1.00E-51 | -1.69E-46 |
| MS.gene05517 | MS.gene88231 | 0.824045 | 9.98E-54 | -1.69E-46 |
| MS.gene055311 | MS.gene88231 | 0.816524 | 5.29E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene88231 | 0.822959 | 1.79E-53 | -1.69E-46 |
| MS.gene055864 | MS.gene88231 | 0.806294 | 8.82E-50 | -1.69E-46 |
| MS.gene056181 | MS.gene88231 | 0.838209 | 3.30E-57 | -1.69E-46 |
| MS.gene056390 | MS.gene88231 | 0.800865 | 1.18E-48 | -1.69E-46 |
| MS.gene056580 | MS.gene88231 | 0.815273 | 1.01E-51 | -1.69E-46 |
| MS.gene056787 | MS.gene88231 | 0.834491 | 2.91E-56 | -1.69E-46 |
| MS.gene056831 | MS.gene88231 | 0.804112 | 2.53E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene88231 | 0.80386 | 2.85E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene88231 | 0.808794 | 2.60E-50 | -1.69E-46 |
| MS.gene058639 | MS.gene88231 | 0.817804 | 2.73E-52 | -1.69E-46 |
| MS.gene058646 | MS.gene88231 | 0.833075 | 6.57E-56 | -1.69E-46 |
| MS.gene058654 | MS.gene88231 | 0.827687 | 1.36E-54 | -1.69E-46 |
| MS.gene058758 | MS.gene88231 | 0.813779 | 2.15E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene88231 | 0.800919 | 1.15E-48 | -1.69E-46 |
| MS.gene06010 | MS.gene88231 | 0.833735 | 4.50E-56 | -1.69E-46 |
| MS.gene06011 | MS.gene88231 | 0.832342 | 9.98E-56 | -1.69E-46 |
| MS.gene060296 | MS.gene88231 | 0.840398 | 8.91E-58 | -1.69E-46 |
| MS.gene060870 | MS.gene88231 | 0.801284 | 9.68E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88231.t1 | MTR_4g052940 | 98.942 | 378 | 1 | 1 | 1 | 375 | 88 | 465 | 0.0 | 780 |
| MS.gene88231.t1 | MTR_7g010360 | 86.216 | 370 | 50 | 1 | 1 | 369 | 327 | 696 | 0.0 | 652 |
| MS.gene88231.t1 | MTR_4g052940 | 99.623 | 265 | 1 | 0 | 1 | 265 | 88 | 352 | 0.0 | 553 |
| MS.gene88231.t1 | MTR_7g104800 | 68.927 | 354 | 106 | 2 | 5 | 357 | 83 | 433 | 3.64e-165 | 471 |
| MS.gene88231.t1 | MTR_7g118120 | 53.022 | 364 | 164 | 4 | 4 | 361 | 85 | 447 | 1.60e-135 | 395 |
| MS.gene88231.t1 | MTR_8g076100 | 30.690 | 290 | 188 | 6 | 6 | 282 | 396 | 685 | 3.59e-39 | 149 |
| MS.gene88231.t1 | MTR_8g076100 | 30.690 | 290 | 188 | 6 | 6 | 282 | 396 | 685 | 4.14e-39 | 149 |
| MS.gene88231.t1 | MTR_8g076100 | 30.690 | 290 | 188 | 6 | 6 | 282 | 396 | 685 | 4.50e-39 | 149 |
| MS.gene88231.t1 | MTR_8g007390 | 30.420 | 286 | 183 | 8 | 1 | 275 | 194 | 474 | 1.58e-32 | 129 |
| MS.gene88231.t1 | MTR_8g007390 | 30.420 | 286 | 183 | 8 | 1 | 275 | 193 | 473 | 1.60e-32 | 129 |
| MS.gene88231.t1 | MTR_7g081210 | 27.197 | 239 | 169 | 4 | 24 | 257 | 195 | 433 | 2.52e-22 | 99.4 |
| MS.gene88231.t1 | MTR_3g102040 | 28.326 | 233 | 151 | 6 | 23 | 245 | 24 | 250 | 8.61e-19 | 88.6 |
| MS.gene88231.t1 | MTR_4g085540 | 23.881 | 268 | 188 | 6 | 23 | 280 | 34 | 295 | 9.25e-18 | 85.5 |
| MS.gene88231.t1 | MTR_4g085540 | 24.478 | 335 | 202 | 10 | 60 | 365 | 158 | 470 | 1.74e-14 | 75.5 |
| MS.gene88231.t1 | MTR_6g040190 | 26.119 | 268 | 181 | 7 | 23 | 281 | 25 | 284 | 5.90e-17 | 82.8 |
| MS.gene88231.t1 | MTR_6g040190 | 21.351 | 370 | 226 | 11 | 23 | 336 | 113 | 473 | 1.86e-12 | 68.9 |
| MS.gene88231.t1 | MTR_5g017280 | 22.753 | 356 | 192 | 10 | 27 | 327 | 8 | 335 | 3.00e-16 | 79.7 |
| MS.gene88231.t1 | MTR_5g017280 | 23.585 | 212 | 151 | 4 | 102 | 313 | 3 | 203 | 6.08e-11 | 63.5 |
| MS.gene88231.t1 | MTR_1g019150 | 23.507 | 268 | 189 | 6 | 23 | 280 | 32 | 293 | 3.43e-16 | 80.5 |
| MS.gene88231.t1 | MTR_1g019150 | 24.110 | 365 | 194 | 15 | 39 | 358 | 136 | 462 | 5.46e-12 | 67.8 |
| MS.gene88231.t1 | MTR_5g017280 | 22.753 | 356 | 192 | 10 | 27 | 327 | 8 | 335 | 3.51e-16 | 79.7 |
| MS.gene88231.t1 | MTR_5g017280 | 23.585 | 212 | 151 | 4 | 102 | 313 | 3 | 203 | 6.49e-11 | 63.9 |
| MS.gene88231.t1 | MTR_1g097440 | 24.803 | 254 | 175 | 6 | 13 | 256 | 20 | 267 | 5.94e-15 | 76.6 |
| MS.gene88231.t1 | MTR_1g097440 | 23.848 | 369 | 220 | 14 | 25 | 358 | 120 | 462 | 1.56e-12 | 69.3 |
| MS.gene88231.t1 | MTR_3g101370 | 22.183 | 284 | 184 | 8 | 25 | 280 | 95 | 369 | 5.59e-13 | 70.1 |
| MS.gene88231.t1 | MTR_3g065190 | 30.636 | 173 | 110 | 4 | 23 | 188 | 25 | 194 | 1.05e-12 | 69.3 |
| MS.gene88231.t1 | MTR_3g027140 | 26.543 | 162 | 98 | 2 | 20 | 162 | 57 | 216 | 2.25e-12 | 66.6 |
| MS.gene88231.t1 | MTR_7g102730 | 24.638 | 345 | 220 | 11 | 25 | 336 | 100 | 437 | 2.47e-12 | 68.6 |
| MS.gene88231.t1 | MTR_7g102730 | 20.000 | 280 | 206 | 7 | 16 | 283 | 1 | 274 | 4.75e-11 | 64.7 |
| MS.gene88231.t1 | MTR_6g040070 | 23.650 | 389 | 229 | 14 | 23 | 373 | 15 | 373 | 4.57e-12 | 68.2 |
| MS.gene88231.t1 | MTR_1g061870 | 22.124 | 339 | 218 | 11 | 22 | 323 | 102 | 431 | 1.89e-11 | 65.9 |
| MS.gene88231.t1 | MTR_3g082650 | 26.207 | 145 | 97 | 5 | 24 | 160 | 19 | 161 | 3.56e-11 | 64.3 |
| MS.gene88231.t1 | MTR_7g013740 | 32.927 | 82 | 55 | 0 | 23 | 104 | 40 | 121 | 7.07e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88231.t1 | AT3G52660 | 61.473 | 353 | 130 | 3 | 9 | 356 | 78 | 429 | 2.27e-161 | 461 |
| MS.gene88231.t1 | AT3G52660 | 61.473 | 353 | 130 | 3 | 9 | 356 | 78 | 429 | 2.27e-161 | 461 |
| MS.gene88231.t1 | AT3G52660 | 61.473 | 353 | 130 | 3 | 9 | 356 | 78 | 429 | 2.27e-161 | 461 |
| MS.gene88231.t1 | AT4G00830 | 54.595 | 370 | 158 | 6 | 4 | 367 | 97 | 462 | 1.15e-146 | 424 |
| MS.gene88231.t1 | AT4G00830 | 54.595 | 370 | 158 | 6 | 4 | 367 | 97 | 462 | 1.15e-146 | 424 |
| MS.gene88231.t1 | AT4G00830 | 54.595 | 370 | 158 | 6 | 4 | 367 | 97 | 462 | 1.15e-146 | 424 |
| MS.gene88231.t1 | AT4G00830 | 53.514 | 370 | 154 | 7 | 4 | 367 | 97 | 454 | 1.87e-140 | 408 |
| MS.gene88231.t1 | AT4G00830 | 53.514 | 370 | 154 | 7 | 4 | 367 | 97 | 454 | 1.87e-140 | 408 |
| MS.gene88231.t1 | AT4G00830 | 52.973 | 370 | 164 | 6 | 4 | 367 | 97 | 462 | 1.16e-139 | 407 |
| MS.gene88231.t1 | AT5G28390 | 47.938 | 194 | 45 | 3 | 166 | 356 | 1 | 141 | 2.05e-52 | 172 |
| MS.gene88231.t1 | AT2G44710 | 28.369 | 282 | 194 | 5 | 2 | 275 | 107 | 388 | 8.21e-30 | 121 |
| MS.gene88231.t1 | AT2G44710 | 28.369 | 282 | 194 | 5 | 2 | 275 | 192 | 473 | 1.22e-29 | 121 |
| MS.gene88231.t1 | AT2G44710 | 28.369 | 282 | 194 | 5 | 2 | 275 | 192 | 473 | 1.22e-29 | 121 |
| MS.gene88231.t1 | AT4G34110 | 25.373 | 268 | 184 | 7 | 23 | 280 | 36 | 297 | 8.46e-20 | 91.7 |
| MS.gene88231.t1 | AT4G34110 | 25.501 | 349 | 208 | 13 | 39 | 358 | 140 | 465 | 1.05e-14 | 75.9 |
| MS.gene88231.t1 | AT2G23350 | 24.188 | 277 | 192 | 7 | 25 | 290 | 48 | 317 | 2.24e-19 | 90.1 |
| MS.gene88231.t1 | AT2G23350 | 25.260 | 384 | 238 | 13 | 25 | 374 | 136 | 504 | 1.23e-16 | 82.0 |
| MS.gene88231.t1 | AT1G71770 | 26.296 | 270 | 180 | 6 | 23 | 280 | 59 | 321 | 1.53e-18 | 87.8 |
| MS.gene88231.t1 | AT1G71770 | 23.925 | 372 | 224 | 15 | 22 | 342 | 145 | 508 | 3.97e-14 | 74.3 |
| MS.gene88231.t1 | AT1G71770 | 26.296 | 270 | 180 | 6 | 23 | 280 | 59 | 321 | 1.53e-18 | 87.8 |
| MS.gene88231.t1 | AT1G71770 | 23.925 | 372 | 224 | 15 | 22 | 342 | 145 | 508 | 3.97e-14 | 74.3 |
| MS.gene88231.t1 | AT1G49760 | 27.160 | 243 | 161 | 6 | 23 | 255 | 45 | 281 | 2.73e-17 | 84.0 |
| MS.gene88231.t1 | AT1G49760 | 25.926 | 324 | 192 | 11 | 60 | 341 | 169 | 486 | 6.76e-14 | 73.6 |
| MS.gene88231.t1 | AT1G49760 | 27.160 | 243 | 161 | 6 | 23 | 255 | 45 | 281 | 2.73e-17 | 84.0 |
| MS.gene88231.t1 | AT1G49760 | 25.926 | 324 | 192 | 11 | 60 | 341 | 169 | 486 | 6.76e-14 | 73.6 |
| MS.gene88231.t1 | AT5G50250 | 28.477 | 151 | 92 | 3 | 19 | 155 | 109 | 257 | 1.00e-14 | 74.3 |
| MS.gene88231.t1 | AT2G36660 | 23.214 | 280 | 184 | 7 | 25 | 280 | 114 | 386 | 2.86e-14 | 74.7 |
| MS.gene88231.t1 | AT1G22760 | 23.134 | 268 | 191 | 5 | 23 | 280 | 49 | 311 | 1.28e-13 | 72.8 |
| MS.gene88231.t1 | AT2G18510 | 30.058 | 173 | 111 | 4 | 23 | 188 | 25 | 194 | 4.74e-13 | 70.1 |
| MS.gene88231.t1 | AT3G16380 | 24.609 | 256 | 175 | 6 | 25 | 268 | 23 | 272 | 1.27e-12 | 69.3 |
| MS.gene88231.t1 | AT1G60000 | 24.859 | 177 | 117 | 4 | 4 | 166 | 64 | 238 | 5.40e-12 | 65.9 |
| MS.gene88231.t1 | AT4G36960 | 27.684 | 177 | 108 | 6 | 24 | 189 | 4 | 171 | 7.40e-12 | 66.6 |
| MS.gene88231.t1 | AT4G36960 | 27.684 | 177 | 108 | 6 | 24 | 189 | 4 | 171 | 7.40e-12 | 66.6 |
| MS.gene88231.t1 | AT1G47500 | 23.019 | 265 | 161 | 7 | 48 | 280 | 130 | 383 | 1.68e-11 | 65.9 |
| MS.gene88231.t1 | AT5G53720 | 37.333 | 75 | 46 | 1 | 22 | 96 | 8 | 81 | 2.31e-11 | 60.5 |
| MS.gene88231.t1 | AT1G47490 | 23.372 | 261 | 165 | 8 | 48 | 280 | 128 | 381 | 2.97e-11 | 65.1 |
Find 97 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGAATAATACCGAATTTA+AGG | 0.200173 | 4.4:-49317657 | MS.gene88231:intron |
| AAAAGATGCTTCTGAGAATA+AGG | 0.213550 | 4.4:-49317735 | MS.gene88231:CDS |
| TGTGGGGTGTGCGGGGTGTG+TGG | 0.229589 | 4.4:+49314459 | None:intergenic |
| GTGGGGTGTGCGGGGTGTGT+GGG | 0.245795 | 4.4:+49314460 | None:intergenic |
| TTCTTTCAAATCTTCACTTT+TGG | 0.272559 | 4.4:+49317896 | None:intergenic |
| GGCCATGATGCCGATGCTTC+TGG | 0.302055 | 4.4:-49314718 | MS.gene88231:CDS |
| TGCGGGGTGTGTGGGGTGTG+TGG | 0.314209 | 4.4:+49314468 | None:intergenic |
| TATCCGCCACCTGTTGGTTA+TGG | 0.346369 | 4.4:-49315460 | MS.gene88231:CDS |
| CTGCTCTTGAGTCACATTCT+TGG | 0.350540 | 4.4:+49315815 | None:intergenic |
| TTTACTCAGCCTTTGATGTA+TGG | 0.351303 | 4.4:-49314765 | MS.gene88231:intron |
| TGGGGTGTGCGGGGTGTGTG+GGG | 0.362329 | 4.4:+49314461 | None:intergenic |
| GGTGCACTTGGTGCAGGATA+TGG | 0.362461 | 4.4:-49315418 | MS.gene88231:CDS |
| CCAACAGGTGGCGGATAACT+TGG | 0.370029 | 4.4:+49315466 | None:intergenic |
| GCGGGGTGTGTGGGGTGTGT+GGG | 0.371111 | 4.4:+49314469 | None:intergenic |
| TGCTCTTGAGTCACATTCTT+GGG | 0.380390 | 4.4:+49315816 | None:intergenic |
| TGTCAGTCACAACCTTCTTC+AGG | 0.399189 | 4.4:+49317370 | None:intergenic |
| GGGGCGTGTGGCTGCAATCC+TGG | 0.399323 | 4.4:+49314489 | None:intergenic |
| TTGGTAATATTCCTAGAAGC+TGG | 0.401173 | 4.4:-49317404 | MS.gene88231:CDS |
| ATATCATATTACCTTAAATT+CGG | 0.410368 | 4.4:+49317646 | None:intergenic |
| CGGGGTGTGTGGGGTGTGTG+GGG | 0.412973 | 4.4:+49314470 | None:intergenic |
| GATGTGAATGTGGGGTGTGC+GGG | 0.422760 | 4.4:+49314451 | None:intergenic |
| GGTCAGCCCAGCTCACTGTT+GGG | 0.423646 | 4.4:+49316411 | None:intergenic |
| CCTGTTGGTTATGGTTTGGT+TGG | 0.436777 | 4.4:-49315451 | MS.gene88231:CDS |
| ACTGAAAGATATGAATTAGA+TGG | 0.444319 | 4.4:-49315657 | MS.gene88231:intron |
| CTGTTGGTTATGGTTTGGTT+GGG | 0.444871 | 4.4:-49315450 | MS.gene88231:CDS |
| TACTTATAGAAATGTAGAAC+TGG | 0.446053 | 4.4:-49317699 | MS.gene88231:CDS |
| GTTCTACCGCCACCAAAGTC+TGG | 0.452167 | 4.4:-49315750 | MS.gene88231:CDS |
| CTTGAGTCACATTCTTGGGA+AGG | 0.453398 | 4.4:+49315820 | None:intergenic |
| TGATTCCTCTGCTTCATCCC+AGG | 0.456779 | 4.4:-49316378 | MS.gene88231:intron |
| CCACCTCTTTGATGTGAATG+TGG | 0.459961 | 4.4:+49314441 | None:intergenic |
| ATGCCGATGCTTCTGGCTGA+TGG | 0.461515 | 4.4:-49314711 | MS.gene88231:CDS |
| GGTTTGGTTGGGAATCCATA+TGG | 0.472566 | 4.4:-49315439 | MS.gene88231:CDS |
| CACCTCTTTGATGTGAATGT+GGG | 0.474178 | 4.4:+49314442 | None:intergenic |
| GCCACCTGTTGGTTATGGTT+TGG | 0.476814 | 4.4:-49315455 | MS.gene88231:CDS |
| GGTATTATTCAGCTCCTCAA+TGG | 0.480446 | 4.4:+49317667 | None:intergenic |
| ACAATTCCCCAACAGTGAGC+TGG | 0.482296 | 4.4:-49316418 | MS.gene88231:CDS |
| CCTGCACCAAGTGCACCATA+TGG | 0.484549 | 4.4:+49315424 | None:intergenic |
| GGTGCAGGATATGGTGCTCC+TGG | 0.485631 | 4.4:-49315409 | MS.gene88231:CDS |
| GGGTCAGCCCAGCTCACTGT+TGG | 0.486511 | 4.4:+49316410 | None:intergenic |
| CCATATGGTGCACTTGGTGC+AGG | 0.490417 | 4.4:-49315424 | MS.gene88231:CDS |
| AAAGATGCTTCTGAGAATAA+GGG | 0.490724 | 4.4:-49317734 | MS.gene88231:CDS |
| TCAGCCTTTGATGTATGGAC+CGG | 0.491896 | 4.4:-49314760 | MS.gene88231:intron |
| TGGTGCTCCTGGTCTTGCTC+AGG | 0.493057 | 4.4:-49315398 | MS.gene88231:intron |
| TGGTAATATTCCTAGAAGCT+GGG | 0.494736 | 4.4:-49317403 | MS.gene88231:CDS |
| TGTGGGGTGTGTGGGGCGTG+TGG | 0.497310 | 4.4:+49314477 | None:intergenic |
| TATGGACCGGGTCAAACTCC+TGG | 0.500903 | 4.4:-49314747 | MS.gene88231:CDS |
| ACCGCCACCAAAGTCTGGTC+AGG | 0.501499 | 4.4:-49315745 | MS.gene88231:CDS |
| GGTCAGGAAAAGAACAGAAT+CGG | 0.514873 | 4.4:-49315729 | MS.gene88231:CDS |
| CAATTCCCCAACAGTGAGCT+GGG | 0.520023 | 4.4:-49316417 | MS.gene88231:CDS |
| CCAAGTTATCCGCCACCTGT+TGG | 0.524145 | 4.4:-49315466 | MS.gene88231:CDS |
| CGTCTGTGTATTTGATACTA+CGG | 0.526755 | 4.4:+49315501 | None:intergenic |
| GGCATCATGGCCATTCCACC+AGG | 0.528246 | 4.4:+49314729 | None:intergenic |
| CCAACCAAACCATAACCAAC+AGG | 0.529349 | 4.4:+49315451 | None:intergenic |
| GGGTCAAACTCCTGGTGGAA+TGG | 0.533060 | 4.4:-49314739 | MS.gene88231:CDS |
| AGCCAGAAGCATCGGCATCA+TGG | 0.537312 | 4.4:+49314716 | None:intergenic |
| GCGAATTGGGGAAGTTGTAC+AGG | 0.537543 | 4.4:-49317865 | MS.gene88231:intron |
| ATGAGCCCGTCATTTAAGCT+TGG | 0.540749 | 4.4:-49316443 | MS.gene88231:CDS |
| CGTCCATCAGCCAGAAGCAT+CGG | 0.547362 | 4.4:+49314708 | None:intergenic |
| TGATGTGAATGTGGGGTGTG+CGG | 0.553606 | 4.4:+49314450 | None:intergenic |
| TCCTGACCAGACTTTGGTGG+CGG | 0.557563 | 4.4:+49315744 | None:intergenic |
| AAGAAGGTTGTGACTGACAT+TGG | 0.557751 | 4.4:-49317366 | MS.gene88231:CDS |
| GGGAATCCATATGGTGCACT+TGG | 0.560561 | 4.4:-49315430 | MS.gene88231:CDS |
| TGTCACCAAGCTTAAATGAC+GGG | 0.566625 | 4.4:+49316438 | None:intergenic |
| TACTGCTGTTGAACTAGTCA+AGG | 0.567757 | 4.4:-49317334 | MS.gene88231:intron |
| ATCAGTGTGCTGAATATGCA+AGG | 0.569348 | 4.4:-49316475 | MS.gene88231:CDS |
| ATGTGAATGTGGGGTGTGCG+GGG | 0.570602 | 4.4:+49314452 | None:intergenic |
| AAAGCCACAGGCTGATCAGA+AGG | 0.571982 | 4.4:-49315524 | MS.gene88231:CDS |
| AAACCATAACCAACAGGTGG+CGG | 0.573239 | 4.4:+49315457 | None:intergenic |
| GTGTTCTTTAGCAAAGCCAC+AGG | 0.575206 | 4.4:-49315536 | MS.gene88231:CDS |
| AAGATCACCTGAGCAAGACC+AGG | 0.576660 | 4.4:+49315391 | None:intergenic |
| GTCAGCCCAGCTCACTGTTG+GGG | 0.581711 | 4.4:+49316412 | None:intergenic |
| AAGTCTGAAGTCTACGTTGG+TGG | 0.585799 | 4.4:-49317933 | MS.gene88231:CDS |
| CAGCCTTTGATGTATGGACC+GGG | 0.587599 | 4.4:-49314759 | MS.gene88231:CDS |
| ACTGGCTTCTAAAGCCATTG+AGG | 0.589922 | 4.4:-49317681 | MS.gene88231:CDS |
| CCACCTTTGTGATCTTCCCA+TGG | 0.594029 | 4.4:+49315772 | None:intergenic |
| GAACAGGTTCGAATAATGAA+AGG | 0.594261 | 4.4:-49317758 | MS.gene88231:intron |
| CTTCTGGCTGATGGACGCAT+CGG | 0.601935 | 4.4:-49314702 | MS.gene88231:CDS |
| TGAAACCTGGGATGAAGCAG+AGG | 0.607973 | 4.4:+49316373 | None:intergenic |
| ATTCCACCAGGAGTTTGACC+CGG | 0.610475 | 4.4:+49314741 | None:intergenic |
| GTTGTGACTGACATTGGACC+TGG | 0.613238 | 4.4:-49317360 | MS.gene88231:CDS |
| TTGTCACCAAGCTTAAATGA+CGG | 0.613638 | 4.4:+49316437 | None:intergenic |
| AGTTCAACAGCAGTAACTCC+AGG | 0.614866 | 4.4:+49317342 | None:intergenic |
| ACCTCTTTGATGTGAATGTG+GGG | 0.617289 | 4.4:+49314443 | None:intergenic |
| GGTAATATTCCTAGAAGCTG+GGG | 0.632899 | 4.4:-49317402 | MS.gene88231:CDS |
| TGACCCGGTCCATACATCAA+AGG | 0.637581 | 4.4:+49314756 | None:intergenic |
| CACAAGTCTGAAGTCTACGT+TGG | 0.648395 | 4.4:-49317936 | MS.gene88231:CDS |
| AGTCGATAAAAGCAAAGCCA+CGG | 0.657500 | 4.4:+49316507 | None:intergenic |
| GTATCAAATACACAGACGCA+AGG | 0.658627 | 4.4:-49315496 | MS.gene88231:CDS |
| ACGGCCTTCTGATCAGCCTG+TGG | 0.664260 | 4.4:+49315520 | None:intergenic |
| GGACCGGGTCAAACTCCTGG+TGG | 0.664975 | 4.4:-49314744 | MS.gene88231:CDS |
| ACCCCACATTCACATCAAAG+AGG | 0.667671 | 4.4:-49314444 | None:intergenic |
| ACCAAACCATAACCAACAGG+TGG | 0.672729 | 4.4:+49315454 | None:intergenic |
| CCATGGGAAGATCACAAAGG+TGG | 0.690491 | 4.4:-49315772 | MS.gene88231:CDS |
| TAGACTTCAGACTTGTGAGG+AGG | 0.696117 | 4.4:+49317942 | None:intergenic |
| ACGTAGACTTCAGACTTGTG+AGG | 0.700253 | 4.4:+49317939 | None:intergenic |
| AAGAACATTAGCAATAACCG+TGG | 0.725163 | 4.4:-49316524 | MS.gene88231:CDS |
| ACACCATGGGAAGATCACAA+AGG | 0.771325 | 4.4:-49315775 | MS.gene88231:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTATATATTAAGTAGA+TGG | + | chr4.4:49315793-49315812 | None:intergenic | 10.0% |
| !! | TAAAAACTTTCAATTAAAAA+TGG | + | chr4.4:49315162-49315181 | None:intergenic | 10.0% |
| !! | TATCAAATAATATCTTTAAA+GGG | + | chr4.4:49315625-49315644 | None:intergenic | 10.0% |
| !! | TTATCAAATAATATCTTTAA+AGG | + | chr4.4:49315626-49315645 | None:intergenic | 10.0% |
| !!! | ATTTTTAATTGAAAGTTTTT+AGG | - | chr4.4:49315161-49315180 | MS.gene88231:intron | 10.0% |
| !!! | TTTTTAATTGAAAGTTTTTA+GGG | - | chr4.4:49315162-49315181 | MS.gene88231:intron | 10.0% |
| !! | ATATCATATTACCTTAAATT+CGG | + | chr4.4:49314798-49314817 | None:intergenic | 15.0% |
| !!! | AAAGATATTATTTGATAATG+AGG | - | chr4.4:49315429-49315448 | MS.gene88231:CDS | 15.0% |
| !!! | AAGATATTATTTGATAATGA+GGG | - | chr4.4:49315430-49315449 | MS.gene88231:CDS | 15.0% |
| !!! | TTATTCATTAACTAGTTTAA+AGG | + | chr4.4:49317298-49317317 | None:intergenic | 15.0% |
| !! | AACTTCTATGTAAAAATACT+TGG | + | chr4.4:49317575-49317594 | None:intergenic | 20.0% |
| !! | ACTTCTATGTAAAAATACTT+GGG | + | chr4.4:49317574-49317593 | None:intergenic | 20.0% |
| !! | ATTTCTCTTATAAAAAGAAC+CGG | + | chr4.4:49317246-49317265 | None:intergenic | 20.0% |
| !! | CTTTCAATTAAAAATGGAAA+AGG | + | chr4.4:49315156-49315175 | None:intergenic | 20.0% |
| !! | TAAACTTACAAGTAAAATAG+AGG | - | chr4.4:49317399-49317418 | MS.gene88231:CDS | 20.0% |
| !!! | AGATATTATTTGATAATGAG+GGG | - | chr4.4:49315431-49315450 | MS.gene88231:CDS | 20.0% |
| !!! | ATTATTTGATAATATCTCCT+TGG | - | chr4.4:49315634-49315653 | MS.gene88231:intron | 20.0% |
| !!! | GTATTGATATTTATGGTTAA+TGG | - | chr4.4:49316127-49316146 | MS.gene88231:intron | 20.0% |
| !!! | GTTGATAGTATTGATATTTA+TGG | - | chr4.4:49316120-49316139 | MS.gene88231:intron | 20.0% |
| !!! | TTTTTAGGGATTATTTGTTA+TGG | - | chr4.4:49315176-49315195 | MS.gene88231:intron | 20.0% |
| ! | AACTGTTGCAAAAATTGATT+AGG | - | chr4.4:49316851-49316870 | MS.gene88231:intron | 25.0% |
| ! | ACTGAAAGATATGAATTAGA+TGG | - | chr4.4:49316784-49316803 | MS.gene88231:intron | 25.0% |
| ! | ACTTATATAGAATACTACCA+AGG | + | chr4.4:49315654-49315673 | None:intergenic | 25.0% |
| ! | CAATAGAAACTAGAGAATAA+TGG | + | chr4.4:49315818-49315837 | None:intergenic | 25.0% |
| ! | GAGACATTAATAAATGACAA+CGG | + | chr4.4:49317344-49317363 | None:intergenic | 25.0% |
| ! | GAGTGTTAAATATGTAAAAG+AGG | + | chr4.4:49317220-49317239 | None:intergenic | 25.0% |
| ! | TAACAATAGTCCTGAAAAAT+TGG | - | chr4.4:49316293-49316312 | MS.gene88231:intron | 25.0% |
| ! | TACTTATAGAAATGTAGAAC+TGG | - | chr4.4:49314742-49314761 | MS.gene88231:CDS | 25.0% |
| ! | TATACACAGAACAAAAACAA+TGG | + | chr4.4:49314614-49314633 | None:intergenic | 25.0% |
| ! | TATCAACAGAGCTTAAAATA+AGG | + | chr4.4:49316107-49316126 | None:intergenic | 25.0% |
| ! | TTGACATTGATGTACATTAA+AGG | + | chr4.4:49316216-49316235 | None:intergenic | 25.0% |
| !! | ATAAATGACAACGGTATTTT+TGG | + | chr4.4:49317335-49317354 | None:intergenic | 25.0% |
| !! | ATTGATTTCTTCTGTGTTAT+TGG | - | chr4.4:49315834-49315853 | MS.gene88231:CDS | 25.0% |
| !! | GCAAAAAATCGTCTTTTTAT+TGG | - | chr4.4:49315018-49315037 | MS.gene88231:intron | 25.0% |
| !! | TAAGAGACATTGAGTATTTT+TGG | + | chr4.4:49317470-49317489 | None:intergenic | 25.0% |
| !! | TTCTTTCAAATCTTCACTTT+TGG | + | chr4.4:49314548-49314567 | None:intergenic | 25.0% |
| !!! | AAGTAAAATAGAGGTATTGA+AGG | - | chr4.4:49317408-49317427 | MS.gene88231:CDS | 25.0% |
| !!! | TAGGTTTGTTATAAGTTTTC+AGG | - | chr4.4:49316870-49316889 | MS.gene88231:intron | 25.0% |
| !!! | TATTTGTTAGTAGCCTTTTA+GGG | - | chr4.4:49315706-49315725 | MS.gene88231:CDS | 25.0% |
| !!! | TTATTTGTTAGTAGCCTTTT+AGG | - | chr4.4:49315705-49315724 | MS.gene88231:CDS | 25.0% |
| AAGCAAAACACAATTTCTTC+CGG | + | chr4.4:49316371-49316390 | None:intergenic | 30.0% | |
| ACTTGAAAATTGATGAGAAC+AGG | - | chr4.4:49314667-49314686 | MS.gene88231:intron | 30.0% | |
| AGATTAATTTATGCTGAACG+TGG | + | chr4.4:49317629-49317648 | None:intergenic | 30.0% | |
| AGCTATGAACTACATTACTA+TGG | - | chr4.4:49316458-49316477 | MS.gene88231:CDS | 30.0% | |
| AGTCATCTTAGAGTTAATCA+AGG | - | chr4.4:49316408-49316427 | MS.gene88231:CDS | 30.0% | |
| ATAGTCCTGAAAAATTGGAA+AGG | - | chr4.4:49316298-49316317 | MS.gene88231:intron | 30.0% | |
| ATTAATTTATGCTGAACGTG+GGG | + | chr4.4:49317627-49317646 | None:intergenic | 30.0% | |
| ATTCTATATAAGTGCGTAGA+GGG | - | chr4.4:49315661-49315680 | MS.gene88231:CDS | 30.0% | |
| ATTCTCTTACTCTCTCTATT+GGG | + | chr4.4:49315332-49315351 | None:intergenic | 30.0% | |
| ATTCTTAAACATGCATGAAC+AGG | - | chr4.4:49316576-49316595 | MS.gene88231:intron | 30.0% | |
| CTAGTTTAAAGGAATTTCTG+TGG | + | chr4.4:49317287-49317306 | None:intergenic | 30.0% | |
| CTATCATTATGGAATTGCAT+TGG | - | chr4.4:49315234-49315253 | MS.gene88231:intron | 30.0% | |
| CTCTTATAAACAAGATCAGA+GGG | - | chr4.4:49317484-49317503 | MS.gene88231:intron | 30.0% | |
| CTGAAAAATTGGAAAGGTTT+GGG | - | chr4.4:49316304-49316323 | MS.gene88231:intron | 30.0% | |
| GATTAATTTATGCTGAACGT+GGG | + | chr4.4:49317628-49317647 | None:intergenic | 30.0% | |
| GCAAAAGAAAACATATTCTC+AGG | + | chr4.4:49317923-49317942 | None:intergenic | 30.0% | |
| GCTGAATAATACCGAATTTA+AGG | - | chr4.4:49314784-49314803 | MS.gene88231:intron | 30.0% | |
| TAAGTAGCTAACAACTTCAA+AGG | + | chr4.4:49314850-49314869 | None:intergenic | 30.0% | |
| TATTCTATATAAGTGCGTAG+AGG | - | chr4.4:49315660-49315679 | MS.gene88231:CDS | 30.0% | |
| TATTCTCTTACTCTCTCTAT+TGG | + | chr4.4:49315333-49315352 | None:intergenic | 30.0% | |
| TCTCTTATAAACAAGATCAG+AGG | - | chr4.4:49317483-49317502 | MS.gene88231:intron | 30.0% | |
| TCTGATACGATACTATGTAT+GGG | - | chr4.4:49315300-49315319 | MS.gene88231:intron | 30.0% | |
| TTCTGATACGATACTATGTA+TGG | - | chr4.4:49315299-49315318 | MS.gene88231:intron | 30.0% | |
| ! | AAAAGATGCTTCTGAGAATA+AGG | - | chr4.4:49314706-49314725 | MS.gene88231:CDS | 30.0% |
| ! | AAAGAATTTTGTGAGCGAAT+TGG | - | chr4.4:49314562-49314581 | MS.gene88231:intron | 30.0% |
| ! | AAAGATGCTTCTGAGAATAA+GGG | - | chr4.4:49314707-49314726 | MS.gene88231:CDS | 30.0% |
| ! | AAGAATTTTGTGAGCGAATT+GGG | - | chr4.4:49314563-49314582 | MS.gene88231:intron | 30.0% |
| ! | AATGTCACTATTTGCTAGAA+TGG | + | chr4.4:49317177-49317196 | None:intergenic | 30.0% |
| ! | CAGAGGAATCAGAATTTTTA+GGG | + | chr4.4:49316054-49316073 | None:intergenic | 30.0% |
| ! | GAGAATATGTTTTCTTTTGC+AGG | - | chr4.4:49317923-49317942 | MS.gene88231:CDS | 30.0% |
| ! | TTTTCTTCTCATCATCATCA+AGG | + | chr4.4:49314456-49314475 | None:intergenic | 30.0% |
| !! | AACTCTAAGATGACTTAAGA+TGG | + | chr4.4:49316403-49316422 | None:intergenic | 30.0% |
| !! | TGTTTTCATTGTGTTACTGT+TGG | - | chr4.4:49317141-49317160 | MS.gene88231:intron | 30.0% |
| !!! | TTTTTTCTATTCCTTGACTC+AGG | - | chr4.4:49315889-49315908 | MS.gene88231:intron | 30.0% |
| AACACATGTGAATTGAAACC+TGG | + | chr4.4:49316084-49316103 | None:intergenic | 35.0% | |
| AAGAACATTAGCAATAACCG+TGG | - | chr4.4:49315917-49315936 | MS.gene88231:intron | 35.0% | |
| AATTGATCATTGACACAGTC+AGG | + | chr4.4:49314961-49314980 | None:intergenic | 35.0% | |
| ACACATGTGAATTGAAACCT+GGG | + | chr4.4:49316083-49316102 | None:intergenic | 35.0% | |
| ACGATAGAGAAATTTGTGTC+CGG | - | chr4.4:49316349-49316368 | MS.gene88231:intron | 35.0% | |
| AGTTGTTAGCTACTTAGCTT+CGG | - | chr4.4:49314854-49314873 | MS.gene88231:intron | 35.0% | |
| ATCATCGTCAAAAAATCGCT+TGG | - | chr4.4:49315209-49315228 | MS.gene88231:intron | 35.0% | |
| ATCGCTTGGAACTATCATTA+TGG | - | chr4.4:49315223-49315242 | MS.gene88231:intron | 35.0% | |
| ATTAATGTCTCCACTTACCT+GGG | - | chr4.4:49317353-49317372 | MS.gene88231:CDS | 35.0% | |
| CCTGAAAAATTGGAAAGGTT+TGG | - | chr4.4:49316303-49316322 | MS.gene88231:intron | 35.0% | |
| CGTCTGTGTATTTGATACTA+CGG | + | chr4.4:49316943-49316962 | None:intergenic | 35.0% | |
| GAACAGGTTCGAATAATGAA+AGG | - | chr4.4:49314683-49314702 | MS.gene88231:intron | 35.0% | |
| GTCAATGATCAATTGTCTCA+GGG | - | chr4.4:49314967-49314986 | MS.gene88231:intron | 35.0% | |
| TAAGACATCTGCAACTATGA+TGG | - | chr4.4:49316176-49316195 | MS.gene88231:intron | 35.0% | |
| TATTAATGTCTCCACTTACC+TGG | - | chr4.4:49317352-49317371 | MS.gene88231:CDS | 35.0% | |
| TCTCTTATAAAAAGAACCGG+CGG | + | chr4.4:49317243-49317262 | None:intergenic | 35.0% | |
| TGGTAATATTCCTAGAAGCT+GGG | - | chr4.4:49315038-49315057 | MS.gene88231:intron | 35.0% | |
| TGTCAATGATCAATTGTCTC+AGG | - | chr4.4:49314966-49314985 | MS.gene88231:intron | 35.0% | |
| TTGTCACCAAGCTTAAATGA+CGG | + | chr4.4:49316007-49316026 | None:intergenic | 35.0% | |
| TTTACTCAGCCTTTGATGTA+TGG | - | chr4.4:49317676-49317695 | MS.gene88231:CDS | 35.0% | |
| ! | AAAGAGGTATGCATGCAATA+AGG | + | chr4.4:49317204-49317223 | None:intergenic | 35.0% |
| ! | AAGAAGCTTTTTGAACACCA+TGG | - | chr4.4:49316652-49316671 | MS.gene88231:intron | 35.0% |
| ! | AATATCTTTAAAGGGCAACC+CGG | + | chr4.4:49315617-49315636 | None:intergenic | 35.0% |
| ! | AGAAGCTTTTTGAACACCAT+GGG | - | chr4.4:49316653-49316672 | MS.gene88231:intron | 35.0% |
| ! | AGAATTTTGTGAGCGAATTG+GGG | - | chr4.4:49314564-49314583 | MS.gene88231:intron | 35.0% |
| ! | AGATACTAGATTGCTGTTAC+TGG | - | chr4.4:49316486-49316505 | MS.gene88231:CDS | 35.0% |
| ! | CAATGCATCTAGGATAGAAA+CGG | + | chr4.4:49316532-49316551 | None:intergenic | 35.0% |
| ! | CCAAACCTTTCCAATTTTTC+AGG | + | chr4.4:49316306-49316325 | None:intergenic | 35.0% |
| ! | GCAGAGGAATCAGAATTTTT+AGG | + | chr4.4:49316055-49316074 | None:intergenic | 35.0% |
| ! | TAATCTGAGATTCTGATGAC+TGG | - | chr4.4:49317643-49317662 | MS.gene88231:intron | 35.0% |
| ! | TTGGTAATATTCCTAGAAGC+TGG | - | chr4.4:49315037-49315056 | MS.gene88231:intron | 35.0% |
| !!! | CGATTTTTTGACGATGATTC+AGG | + | chr4.4:49315207-49315226 | None:intergenic | 35.0% |
| AAACATGCATGAACAGGTGA+AGG | - | chr4.4:49316582-49316601 | MS.gene88231:intron | 40.0% | |
| AACAGCCTCTTGTGTAAAAC+AGG | - | chr4.4:49315519-49315538 | MS.gene88231:CDS | 40.0% | |
| AAGAAGGTTGTGACTGACAT+TGG | - | chr4.4:49315075-49315094 | MS.gene88231:intron | 40.0% | |
| AAGTACTCAATGTCAGGATC+TGG | - | chr4.4:49315273-49315292 | MS.gene88231:intron | 40.0% | |
| ACAGCCTCTTGTGTAAAACA+GGG | - | chr4.4:49315520-49315539 | MS.gene88231:CDS | 40.0% | |
| AGATCCTGACATTGAGTACT+TGG | + | chr4.4:49315274-49315293 | None:intergenic | 40.0% | |
| AGTCGATAAAAGCAAAGCCA+CGG | + | chr4.4:49315937-49315956 | None:intergenic | 40.0% | |
| ATCAGTGTGCTGAATATGCA+AGG | - | chr4.4:49315966-49315985 | MS.gene88231:intron | 40.0% | |
| ATGATCAATTGTCTCAGGGT+AGG | - | chr4.4:49314971-49314990 | MS.gene88231:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr4.4:49315551-49315570 | MS.gene88231:CDS | 40.0% | |
| CGTTTCTATCCTAGATGCAT+TGG | - | chr4.4:49316530-49316549 | MS.gene88231:CDS | 40.0% | |
| CTCTTATAAAAAGAACCGGC+GGG | + | chr4.4:49317242-49317261 | None:intergenic | 40.0% | |
| CTCTTGTGTAAAACAGGGTA+AGG | - | chr4.4:49315525-49315544 | MS.gene88231:CDS | 40.0% | |
| CTTCAAAGGAGAAGGATCTA+TGG | + | chr4.4:49314836-49314855 | None:intergenic | 40.0% | |
| GAAAACATATTCTCAGGCTC+TGG | + | chr4.4:49317917-49317936 | None:intergenic | 40.0% | |
| GCTAACAACTTCAAAGGAGA+AGG | + | chr4.4:49314844-49314863 | None:intergenic | 40.0% | |
| GGTAATATTCCTAGAAGCTG+GGG | - | chr4.4:49315039-49315058 | MS.gene88231:intron | 40.0% | |
| GGTATTATTCAGCTCCTCAA+TGG | + | chr4.4:49314777-49314796 | None:intergenic | 40.0% | |
| GGTCAGGAAAAGAACAGAAT+CGG | - | chr4.4:49316712-49316731 | MS.gene88231:intron | 40.0% | |
| GTATCAAATACACAGACGCA+AGG | - | chr4.4:49316945-49316964 | MS.gene88231:intron | 40.0% | |
| GTTCTTCATATCCTGAGTCA+AGG | + | chr4.4:49315903-49315922 | None:intergenic | 40.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | - | chr4.4:49315476-49315495 | MS.gene88231:CDS | 40.0% | |
| TACATATTTAACACTCCCGC+CGG | - | chr4.4:49317224-49317243 | MS.gene88231:intron | 40.0% | |
| TACTGCTGTTGAACTAGTCA+AGG | - | chr4.4:49315107-49315126 | MS.gene88231:intron | 40.0% | |
| TGAACGTGGGGATAAATCAA+TGG | + | chr4.4:49317615-49317634 | None:intergenic | 40.0% | |
| TGCTCTTGAGTCACATTCTT+GGG | + | chr4.4:49316628-49316647 | None:intergenic | 40.0% | |
| TGTCACCAAGCTTAAATGAC+GGG | + | chr4.4:49316006-49316025 | None:intergenic | 40.0% | |
| TTAATGTCTCCACTTACCTG+GGG | - | chr4.4:49317354-49317373 | MS.gene88231:CDS | 40.0% | |
| TTACTCTCTCTATTGGGCTA+AGG | + | chr4.4:49315326-49315345 | None:intergenic | 40.0% | |
| ! | ACAAAATTCCCATTTTCCCC+AGG | + | chr4.4:49317373-49317392 | None:intergenic | 40.0% |
| ! | CTTACCCTGTTTTACACAAG+AGG | + | chr4.4:49315527-49315546 | None:intergenic | 40.0% |
| ! | TTCTTTTCCTGACCAGACTT+TGG | + | chr4.4:49316706-49316725 | None:intergenic | 40.0% |
| !! | AAAGGTTTGGGTTGTCAGAT+AGG | - | chr4.4:49316316-49316335 | MS.gene88231:intron | 40.0% |
| !! | CTGTTGGTTATGGTTTGGTT+GGG | - | chr4.4:49316991-49317010 | MS.gene88231:intron | 40.0% |
| !! | TCTTCACTTTTGGCATCAAG+AGG | + | chr4.4:49314538-49314557 | None:intergenic | 40.0% |
| !! | TTGATAATGAGGGGTAACCT+TGG | - | chr4.4:49315440-49315459 | MS.gene88231:CDS | 40.0% |
| AAACCATAACCAACAGGTGG+CGG | + | chr4.4:49316987-49317006 | None:intergenic | 45.0% | |
| ACACCATGGGAAGATCACAA+AGG | - | chr4.4:49316666-49316685 | MS.gene88231:intron | 45.0% | |
| ACCAAACCATAACCAACAGG+TGG | + | chr4.4:49316990-49317009 | None:intergenic | 45.0% | |
| ACCTCCAAGTACTCAATGTC+AGG | - | chr4.4:49315267-49315286 | MS.gene88231:intron | 45.0% | |
| ACGTAGACTTCAGACTTGTG+AGG | + | chr4.4:49314505-49314524 | None:intergenic | 45.0% | |
| AGTTCAACAGCAGTAACTCC+AGG | + | chr4.4:49315102-49315121 | None:intergenic | 45.0% | |
| ATGAGCCCGTCATTTAAGCT+TGG | - | chr4.4:49315998-49316017 | MS.gene88231:intron | 45.0% | |
| CCAACCAAACCATAACCAAC+AGG | + | chr4.4:49316993-49317012 | None:intergenic | 45.0% | |
| CTGCTCTTGAGTCACATTCT+TGG | + | chr4.4:49316629-49316648 | None:intergenic | 45.0% | |
| CTTGAGTCACATTCTTGGGA+AGG | + | chr4.4:49316624-49316643 | None:intergenic | 45.0% | |
| GACATCTGCAACTATGATGG+AGG | - | chr4.4:49316179-49316198 | MS.gene88231:intron | 45.0% | |
| GCGTACAAACCAATGCATCT+AGG | + | chr4.4:49316542-49316561 | None:intergenic | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr4.4:49315550-49315569 | MS.gene88231:CDS | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr4.4:49315547-49315566 | MS.gene88231:CDS | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | - | chr4.4:49315482-49315501 | MS.gene88231:CDS | 45.0% | |
| GTGTTCTTTAGCAAAGCCAC+AGG | - | chr4.4:49316905-49316924 | MS.gene88231:intron | 45.0% | |
| TAGACTTCAGACTTGTGAGG+AGG | + | chr4.4:49314502-49314521 | None:intergenic | 45.0% | |
| TCAGCCTTTGATGTATGGAC+CGG | - | chr4.4:49317681-49317700 | MS.gene88231:CDS | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | - | chr4.4:49315483-49315502 | MS.gene88231:CDS | 45.0% | |
| TCCACTTACCTGGGGAAAAT+GGG | - | chr4.4:49317362-49317381 | MS.gene88231:CDS | 45.0% | |
| TCCTGACATTGAGTACTTGG+AGG | + | chr4.4:49315271-49315290 | None:intergenic | 45.0% | |
| TGTCAGTCACAACCTTCTTC+AGG | + | chr4.4:49315074-49315093 | None:intergenic | 45.0% | |
| ! | AAGTCTGAAGTCTACGTTGG+TGG | - | chr4.4:49314508-49314527 | MS.gene88231:intron | 45.0% |
| ! | CACAAGTCTGAAGTCTACGT+TGG | - | chr4.4:49314505-49314524 | MS.gene88231:intron | 45.0% |
| ! | GGTTTGGTTGGGAATCCATA+TGG | - | chr4.4:49317002-49317021 | MS.gene88231:intron | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr4.4:49315516-49315535 | None:intergenic | 45.0% |
| ! | TTCTTTTGCAGGCAACAACC+AGG | - | chr4.4:49317934-49317953 | MS.gene88231:CDS | 45.0% |
| ! | TTTTCCTGACCAGACTTTGG+TGG | + | chr4.4:49316703-49316722 | None:intergenic | 45.0% |
| !! | ACTGGCTTCTAAAGCCATTG+AGG | - | chr4.4:49314760-49314779 | MS.gene88231:intron | 45.0% |
| !! | CCTGTTGGTTATGGTTTGGT+TGG | - | chr4.4:49316990-49317009 | MS.gene88231:intron | 45.0% |
| !! | CTTGCAAAGTGCTGCTTTCT+AGG | - | chr4.4:49316245-49316264 | MS.gene88231:intron | 45.0% |
| !!! | TGTTAGTAGCCTTTTAGGGC+CGG | - | chr4.4:49315710-49315729 | MS.gene88231:CDS | 45.0% |
| AAAGCCACAGGCTGATCAGA+AGG | - | chr4.4:49316917-49316936 | MS.gene88231:intron | 50.0% | |
| AAGATCACCTGAGCAAGACC+AGG | + | chr4.4:49317053-49317072 | None:intergenic | 50.0% | |
| ACAATTCCCCAACAGTGAGC+TGG | - | chr4.4:49316023-49316042 | MS.gene88231:intron | 50.0% | |
| ATTCCACCAGGAGTTTGACC+CGG | + | chr4.4:49317703-49317722 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr4.4:49315460-49315479 | None:intergenic | 50.0% | |
| CAATTCCCCAACAGTGAGCT+GGG | - | chr4.4:49316024-49316043 | MS.gene88231:intron | 50.0% | |
| CAGCCTTTGATGTATGGACC+GGG | - | chr4.4:49317682-49317701 | MS.gene88231:CDS | 50.0% | |
| CCACCTTTGTGATCTTCCCA+TGG | + | chr4.4:49316672-49316691 | None:intergenic | 50.0% | |
| CCATGGGAAGATCACAAAGG+TGG | - | chr4.4:49316669-49316688 | MS.gene88231:intron | 50.0% | |
| CTCCACTTACCTGGGGAAAA+TGG | - | chr4.4:49317361-49317380 | MS.gene88231:CDS | 50.0% | |
| GCGAATTGGGGAAGTTGTAC+AGG | - | chr4.4:49314576-49314595 | MS.gene88231:intron | 50.0% | |
| GGGAATCCATATGGTGCACT+TGG | - | chr4.4:49317011-49317030 | MS.gene88231:intron | 50.0% | |
| GGGAGTTCGAGGTAAGCAAT+TGG | - | chr4.4:49315681-49315700 | MS.gene88231:CDS | 50.0% | |
| GGGCGAAAAAGACCTGAAGA+AGG | - | chr4.4:49315059-49315078 | MS.gene88231:intron | 50.0% | |
| GTTGTGACTGACATTGGACC+TGG | - | chr4.4:49315081-49315100 | MS.gene88231:intron | 50.0% | |
| TCAGCAAAGTCTCTTGCTGC+CGG | + | chr4.4:49315732-49315751 | None:intergenic | 50.0% | |
| TGAAACCTGGGATGAAGCAG+AGG | + | chr4.4:49316071-49316090 | None:intergenic | 50.0% | |
| TGACCCGGTCCATACATCAA+AGG | + | chr4.4:49317688-49317707 | None:intergenic | 50.0% | |
| TGATGTGAATGTGGGGTGTG+CGG | + | chr4.4:49317994-49318013 | None:intergenic | 50.0% | |
| TGATTCCTCTGCTTCATCCC+AGG | - | chr4.4:49316063-49316082 | MS.gene88231:intron | 50.0% | |
| TTTGCTGAGGAGCTTTGCTC+TGG | - | chr4.4:49315744-49315763 | MS.gene88231:CDS | 50.0% | |
| ! | GCCACCTGTTGGTTATGGTT+TGG | - | chr4.4:49316986-49317005 | MS.gene88231:intron | 50.0% |
| ! | TATCCGCCACCTGTTGGTTA+TGG | - | chr4.4:49316981-49317000 | MS.gene88231:intron | 50.0% |
| ! | TCCCATTTTCCCCAGGTAAG+TGG | + | chr4.4:49317366-49317385 | None:intergenic | 50.0% |
| !! | GGCTCTGGATTCAAGCAACT+AGG | + | chr4.4:49317902-49317921 | None:intergenic | 50.0% |
| !! | TCTTTTTCGCCCCAGCTTCT+AGG | + | chr4.4:49315051-49315070 | None:intergenic | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr4.4:49315495-49315514 | MS.gene88231:CDS | 55.0% | |
| AAGTGCGTAGAGGGAGTTCG+AGG | - | chr4.4:49315670-49315689 | MS.gene88231:CDS | 55.0% | |
| ACTAGAGCTCCCGCATATGC+AGG | + | chr4.4:49315591-49315610 | None:intergenic | 55.0% | |
| ATGTGAATGTGGGGTGTGCG+GGG | + | chr4.4:49317992-49318011 | None:intergenic | 55.0% | |
| CCAAGTTATCCGCCACCTGT+TGG | - | chr4.4:49316975-49316994 | MS.gene88231:intron | 55.0% | |
| CCTGCACCAAGTGCACCATA+TGG | + | chr4.4:49317020-49317039 | None:intergenic | 55.0% | |
| CTAGAGCTCCCGCATATGCA+GGG | + | chr4.4:49315590-49315609 | None:intergenic | 55.0% | |
| GATGTGAATGTGGGGTGTGC+GGG | + | chr4.4:49317993-49318012 | None:intergenic | 55.0% | |
| GGCAGCAAGAGACTTTGCTG+AGG | - | chr4.4:49315731-49315750 | MS.gene88231:CDS | 55.0% | |
| GGGTCAAACTCCTGGTGGAA+TGG | - | chr4.4:49317702-49317721 | MS.gene88231:CDS | 55.0% | |
| GTTCTACCGCCACCAAAGTC+TGG | - | chr4.4:49316691-49316710 | MS.gene88231:intron | 55.0% | |
| TATGGACCGGGTCAAACTCC+TGG | - | chr4.4:49317694-49317713 | MS.gene88231:CDS | 55.0% | |
| TCCTGACCAGACTTTGGTGG+CGG | + | chr4.4:49316700-49316719 | None:intergenic | 55.0% | |
| ! | ATGCCGATGCTTCTGGCTGA+TGG | - | chr4.4:49317730-49317749 | MS.gene88231:CDS | 55.0% |
| ! | CGTCCATCAGCCAGAAGCAT+CGG | + | chr4.4:49317736-49317755 | None:intergenic | 55.0% |
| ! | CTTCTGGCTGATGGACGCAT+CGG | - | chr4.4:49317739-49317758 | MS.gene88231:CDS | 55.0% |
| !! | AGCCAGAAGCATCGGCATCA+TGG | + | chr4.4:49317728-49317747 | None:intergenic | 55.0% |
| !! | CCAACAGGTGGCGGATAACT+TGG | + | chr4.4:49316978-49316997 | None:intergenic | 55.0% |
| !! | CCATATGGTGCACTTGGTGC+AGG | - | chr4.4:49317017-49317036 | MS.gene88231:intron | 55.0% |
| !! | GGTGCACTTGGTGCAGGATA+TGG | - | chr4.4:49317023-49317042 | MS.gene88231:intron | 55.0% |
| ACCGCCACCAAAGTCTGGTC+AGG | - | chr4.4:49316696-49316715 | MS.gene88231:intron | 60.0% | |
| ACGGCCTTCTGATCAGCCTG+TGG | + | chr4.4:49316924-49316943 | None:intergenic | 60.0% | |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr4.4:49315449-49315468 | MS.gene88231:CDS | 60.0% | |
| CATATGCAGGGTCCGGGAAG+GGG | + | chr4.4:49315578-49315597 | None:intergenic | 60.0% | |
| CTCTTGCTGCCGGCCCTAAA+AGG | + | chr4.4:49315722-49315741 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | - | chr4.4:49315578-49315597 | MS.gene88231:intron | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | + | chr4.4:49315579-49315598 | None:intergenic | 60.0% | |
| GGCATCATGGCCATTCCACC+AGG | + | chr4.4:49317715-49317734 | None:intergenic | 60.0% | |
| GGCCATGATGCCGATGCTTC+TGG | - | chr4.4:49317723-49317742 | MS.gene88231:CDS | 60.0% | |
| GGTCAGCCCAGCTCACTGTT+GGG | + | chr4.4:49316033-49316052 | None:intergenic | 60.0% | |
| GGTGCAGGATATGGTGCTCC+TGG | - | chr4.4:49317032-49317051 | MS.gene88231:intron | 60.0% | |
| GTCAGCCCAGCTCACTGTTG+GGG | + | chr4.4:49316032-49316051 | None:intergenic | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | - | chr4.4:49315579-49315598 | MS.gene88231:intron | 60.0% | |
| ! | ATGCGGGAGCTCTAGTGCAC+CGG | - | chr4.4:49315595-49315614 | MS.gene88231:intron | 60.0% |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr4.4:49315563-49315582 | MS.gene88231:intron | 60.0% |
| !! | TGGTGCTCCTGGTCTTGCTC+AGG | - | chr4.4:49317043-49317062 | MS.gene88231:intron | 60.0% |
| CGCATATGCAGGGTCCGGGA+AGG | + | chr4.4:49315580-49315599 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr4.4:49315565-49315584 | None:intergenic | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | + | chr4.4:49315584-49315603 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | + | chr4.4:49315585-49315604 | None:intergenic | 65.0% | |
| GGACCGGGTCAAACTCCTGG+TGG | - | chr4.4:49317697-49317716 | MS.gene88231:CDS | 65.0% | |
| GGGTCAGCCCAGCTCACTGT+TGG | + | chr4.4:49316034-49316053 | None:intergenic | 65.0% | |
| ! | TGCGGGAGCTCTAGTGCACC+GGG | - | chr4.4:49315596-49315615 | MS.gene88231:intron | 65.0% |
| CGGGGTGTGTGGGGTGTGTG+GGG | + | chr4.4:49317974-49317993 | None:intergenic | 70.0% | |
| GCGGGGTGTGTGGGGTGTGT+GGG | + | chr4.4:49317975-49317994 | None:intergenic | 70.0% | |
| GGGGCGTGTGGCTGCAATCC+TGG | + | chr4.4:49317955-49317974 | None:intergenic | 70.0% | |
| GTGGGGTGTGCGGGGTGTGT+GGG | + | chr4.4:49317984-49318003 | None:intergenic | 70.0% | |
| TGCGGGGTGTGTGGGGTGTG+TGG | + | chr4.4:49317976-49317995 | None:intergenic | 70.0% | |
| TGGGGTGTGCGGGGTGTGTG+GGG | + | chr4.4:49317983-49318002 | None:intergenic | 70.0% | |
| TGTGGGGTGTGCGGGGTGTG+TGG | + | chr4.4:49317985-49318004 | None:intergenic | 70.0% | |
| TGTGGGGTGTGTGGGGCGTG+TGG | + | chr4.4:49317967-49317986 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 49314445 | 49318018 | 49314445 | ID=MS.gene88231 |
| chr4.4 | mRNA | 49314445 | 49318018 | 49314445 | ID=MS.gene88231.t1;Parent=MS.gene88231 |
| chr4.4 | exon | 49317866 | 49318018 | 49317866 | ID=MS.gene88231.t1.exon1;Parent=MS.gene88231.t1 |
| chr4.4 | CDS | 49317866 | 49318018 | 49317866 | ID=cds.MS.gene88231.t1;Parent=MS.gene88231.t1 |
| chr4.4 | exon | 49317658 | 49317774 | 49317658 | ID=MS.gene88231.t1.exon2;Parent=MS.gene88231.t1 |
| chr4.4 | CDS | 49317658 | 49317774 | 49317658 | ID=cds.MS.gene88231.t1;Parent=MS.gene88231.t1 |
| chr4.4 | exon | 49317335 | 49317475 | 49317335 | ID=MS.gene88231.t1.exon3;Parent=MS.gene88231.t1 |
| chr4.4 | CDS | 49317335 | 49317475 | 49317335 | ID=cds.MS.gene88231.t1;Parent=MS.gene88231.t1 |
| chr4.4 | exon | 49316379 | 49316552 | 49316379 | ID=MS.gene88231.t1.exon4;Parent=MS.gene88231.t1 |
| chr4.4 | CDS | 49316379 | 49316552 | 49316379 | ID=cds.MS.gene88231.t1;Parent=MS.gene88231.t1 |
| chr4.4 | exon | 49315658 | 49315865 | 49315658 | ID=MS.gene88231.t1.exon5;Parent=MS.gene88231.t1 |
| chr4.4 | CDS | 49315658 | 49315865 | 49315658 | ID=cds.MS.gene88231.t1;Parent=MS.gene88231.t1 |
| chr4.4 | exon | 49315399 | 49315571 | 49315399 | ID=MS.gene88231.t1.exon6;Parent=MS.gene88231.t1 |
| chr4.4 | CDS | 49315399 | 49315571 | 49315399 | ID=cds.MS.gene88231.t1;Parent=MS.gene88231.t1 |
| chr4.4 | exon | 49314693 | 49314778 | 49314693 | ID=MS.gene88231.t1.exon7;Parent=MS.gene88231.t1 |
| chr4.4 | CDS | 49314693 | 49314778 | 49314693 | ID=cds.MS.gene88231.t1;Parent=MS.gene88231.t1 |
| chr4.4 | exon | 49314445 | 49314518 | 49314445 | ID=MS.gene88231.t1.exon8;Parent=MS.gene88231.t1 |
| chr4.4 | CDS | 49314445 | 49314518 | 49314445 | ID=cds.MS.gene88231.t1;Parent=MS.gene88231.t1 |
| Gene Sequence |
| Protein sequence |
