Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88388.t1 | XP_003596499.2 | 94.2 | 747 | 10 | 1 | 1 | 747 | 89 | 802 | 0.00E+00 | 1413.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88388.t1 | Q8L6Y1 | 71.3 | 749 | 172 | 5 | 1 | 747 | 89 | 796 | 0.0e+00 | 1089.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88388.t1 | G7IR70 | 94.2 | 747 | 10 | 1 | 1 | 747 | 89 | 802 | 0.0e+00 | 1413.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene88388 | 0.820138 | 8.03E-53 | -1.69E-46 |
| MS.gene050277 | MS.gene88388 | 0.814708 | 1.34E-51 | -1.69E-46 |
| MS.gene050559 | MS.gene88388 | 0.800867 | 1.18E-48 | -1.69E-46 |
| MS.gene050561 | MS.gene88388 | 0.802906 | 4.49E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene88388 | 0.803381 | 3.58E-49 | -1.69E-46 |
| MS.gene050719 | MS.gene88388 | 0.805973 | 1.03E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene88388 | 0.806963 | 6.37E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene88388 | 0.81222 | 4.73E-51 | -1.69E-46 |
| MS.gene051247 | MS.gene88388 | 0.809883 | 1.52E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene88388 | 0.810574 | 1.08E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene88388 | 0.823068 | 1.69E-53 | -1.69E-46 |
| MS.gene052856 | MS.gene88388 | 0.81267 | 3.77E-51 | -1.69E-46 |
| MS.gene052858 | MS.gene88388 | 0.811907 | 5.53E-51 | -1.69E-46 |
| MS.gene052860 | MS.gene88388 | 0.820993 | 5.11E-53 | -1.69E-46 |
| MS.gene053998 | MS.gene88388 | 0.823488 | 1.35E-53 | -1.69E-46 |
| MS.gene055512 | MS.gene88388 | 0.821905 | 3.15E-53 | -1.69E-46 |
| MS.gene056553 | MS.gene88388 | 0.80192 | 7.17E-49 | -1.69E-46 |
| MS.gene056760 | MS.gene88388 | 0.806798 | 6.91E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene88388 | 0.815529 | 8.83E-52 | -1.69E-46 |
| MS.gene05795 | MS.gene88388 | 0.809476 | 1.86E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene88388 | 0.806374 | 8.48E-50 | -1.69E-46 |
| MS.gene058055 | MS.gene88388 | 0.810503 | 1.12E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene88388 | 0.809262 | 2.06E-50 | -1.69E-46 |
| MS.gene05978 | MS.gene88388 | 0.816588 | 5.12E-52 | -1.69E-46 |
| MS.gene060167 | MS.gene88388 | 0.824792 | 6.66E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene88388 | MS.gene81765 | PPI |
| MS.gene88388 | MS.gene06645 | PPI |
| MS.gene88388 | MS.gene034846 | PPI |
| MS.gene88388 | MS.gene057206 | PPI |
| MS.gene88388 | MS.gene056896 | PPI |
| MS.gene013534 | MS.gene88388 | PPI |
| MS.gene88388 | MS.gene06859 | PPI |
| MS.gene88388 | MS.gene050290 | PPI |
| MS.gene88388 | MS.gene050252 | PPI |
| MS.gene24706 | MS.gene88388 | PPI |
| MS.gene88388 | MS.gene007189 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88388.t1 | MTR_2g081180 | 94.244 | 747 | 10 | 1 | 1 | 747 | 71 | 784 | 0.0 | 1452 |
| MS.gene88388.t1 | MTR_2g081180 | 94.244 | 747 | 10 | 1 | 1 | 747 | 89 | 802 | 0.0 | 1451 |
| MS.gene88388.t1 | MTR_2g081180 | 92.503 | 747 | 9 | 2 | 1 | 747 | 89 | 788 | 0.0 | 1414 |
| MS.gene88388.t1 | MTR_2g081180 | 92.642 | 598 | 11 | 1 | 150 | 747 | 4 | 568 | 0.0 | 1140 |
| MS.gene88388.t1 | MTR_2g081180 | 92.527 | 562 | 9 | 1 | 186 | 747 | 1 | 529 | 0.0 | 1071 |
| MS.gene88388.t1 | MTR_8g464880 | 62.500 | 120 | 37 | 2 | 541 | 657 | 1 | 115 | 3.67e-40 | 144 |
| MS.gene88388.t1 | MTR_4g077475 | 54.167 | 72 | 33 | 0 | 676 | 747 | 58 | 129 | 3.45e-20 | 87.4 |
| MS.gene88388.t1 | MTR_4g077475 | 70.000 | 60 | 17 | 1 | 458 | 517 | 1 | 59 | 5.79e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88388.t1 | AT3G20630 | 71.295 | 749 | 172 | 5 | 1 | 747 | 89 | 796 | 0.0 | 1102 |
Find 176 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTCAAAATTGGTATTT+TGG | 0.154188 | 2.4:-17104981 | None:intergenic |
| CCACTTCCTGCCCACTTTCT+TGG | 0.161699 | 2.4:-17105011 | None:intergenic |
| TGTTTCACAGCTGGTTTCTA+TGG | 0.210475 | 2.4:+17108574 | MS.gene88388:CDS |
| TCTTTCTTTCAGTTGTTATT+TGG | 0.220648 | 2.4:+17105161 | MS.gene88388:intron |
| CGAACTTATAGGGTTGTTAA+TGG | 0.221732 | 2.4:+17109265 | MS.gene88388:intron |
| GATTCTATTCCATTCAAAAT+TGG | 0.229016 | 2.4:-17104989 | None:intergenic |
| GGCTGGTCTGACATCATTTC+CGG | 0.268886 | 2.4:+17107771 | MS.gene88388:CDS |
| CAGCACGATCTTTCTCTTCA+AGG | 0.285617 | 2.4:+17105208 | MS.gene88388:CDS |
| TTCCACAGGATATCGACTTA+TGG | 0.286341 | 2.4:+17109367 | MS.gene88388:CDS |
| TCCACAGGATATCGACTTAT+GGG | 0.329168 | 2.4:+17109368 | MS.gene88388:CDS |
| ACATCTTGAAAGACGGTAGA+TGG | 0.332159 | 2.4:+17109441 | MS.gene88388:CDS |
| ATATCCTTCTGTGGAATTAC+CGG | 0.332484 | 2.4:+17101872 | MS.gene88388:CDS |
| GTTGATATGCTACTTTCATT+TGG | 0.336414 | 2.4:+17108843 | MS.gene88388:CDS |
| CATGTCCTTGGGAGGATTAA+TGG | 0.341823 | 2.4:-17109495 | None:intergenic |
| TGAAAACTTGTCCATTCTTC+GGG | 0.344528 | 2.4:-17109293 | None:intergenic |
| ATGAAAACTTGTCCATTCTT+CGG | 0.351974 | 2.4:-17109294 | None:intergenic |
| GTGACAAGACAGACAATCTT+TGG | 0.355394 | 2.4:+17102189 | MS.gene88388:CDS |
| GACATCATTTCCGGATTATC+TGG | 0.361596 | 2.4:+17107780 | MS.gene88388:CDS |
| GGGAGCATTTCCACCCAGTT+GGG | 0.379352 | 2.4:-17102163 | None:intergenic |
| GAAAAGTTGCATACAATAGA+AGG | 0.386707 | 2.4:+17106909 | MS.gene88388:CDS |
| CGGAACTATTACTGCTGATC+TGG | 0.387196 | 2.4:+17102328 | MS.gene88388:CDS |
| CAAATGCCTTCTTTAGACTT+TGG | 0.387309 | 2.4:-17105322 | None:intergenic |
| AACTTTATTACTTCGACAAA+TGG | 0.391785 | 2.4:+17109320 | MS.gene88388:CDS |
| CTTGCACATGGTTTACTGTC+TGG | 0.392484 | 2.4:+17105693 | MS.gene88388:CDS |
| CCAAACTTGAAACTCCTTGC+GGG | 0.398914 | 2.4:-17106857 | None:intergenic |
| CCCGCAAGGAGTTTCAAGTT+TGG | 0.407324 | 2.4:+17106857 | MS.gene88388:CDS |
| TGACTGATATCAATGATATC+AGG | 0.409150 | 2.4:-17107956 | None:intergenic |
| GCACATGCGCAAATTTGTTA+TGG | 0.413937 | 2.4:+17107807 | MS.gene88388:CDS |
| AGAGCCACGCCCTCTCGAAA+TGG | 0.421013 | 2.4:-17108799 | None:intergenic |
| TCGGATAAATCAGCATCATT+TGG | 0.421423 | 2.4:-17109116 | None:intergenic |
| GTAAAGATAGCCCATGTCCT+TGG | 0.425428 | 2.4:-17109507 | None:intergenic |
| TGATTTCTCATCACTACAAA+AGG | 0.427517 | 2.4:+17104086 | MS.gene88388:CDS |
| TGGAATAGAATCCAAGAAAG+TGG | 0.428006 | 2.4:+17105000 | MS.gene88388:CDS |
| ACTGATGGAGTGATCCTTTG+TGG | 0.429861 | 2.4:+17102221 | MS.gene88388:CDS |
| TAATGGTTATTCCCGAAGAA+TGG | 0.441213 | 2.4:+17109282 | MS.gene88388:CDS |
| TGTTAGTTGCTTCATGCAAT+GGG | 0.443599 | 2.4:-17106958 | None:intergenic |
| TGACGCATAGTAGAAAATTC+CGG | 0.445319 | 2.4:-17106396 | None:intergenic |
| GTTTCACAGCTGGTTTCTAT+GGG | 0.445621 | 2.4:+17108575 | MS.gene88388:CDS |
| GATTGGTCAATCTAGGAAAC+AGG | 0.446646 | 2.4:+17105061 | MS.gene88388:CDS |
| CGTAGCAAAGGTCATCAACC+TGG | 0.446947 | 2.4:+17107983 | MS.gene88388:CDS |
| TATGCATCTGTAGGTATTGA+TGG | 0.447383 | 2.4:+17101774 | MS.gene88388:intron |
| GTCGTAATGAATTTCTCTCT+TGG | 0.452448 | 2.4:+17109342 | MS.gene88388:CDS |
| TTGTTAGTTGCTTCATGCAA+TGG | 0.453282 | 2.4:-17106959 | None:intergenic |
| GAAAGCTCACCGCAGATGTA+GGG | 0.456885 | 2.4:-17105851 | None:intergenic |
| TTGCACATGGTTTACTGTCT+GGG | 0.459136 | 2.4:+17105694 | MS.gene88388:CDS |
| GAGCCACGCCCTCTCGAAAT+GGG | 0.459446 | 2.4:-17108798 | None:intergenic |
| CAAGTGGAGCGTGCTAATGC+TGG | 0.464682 | 2.4:+17106818 | MS.gene88388:CDS |
| CTGTGAAACAATGTCTTCAT+TGG | 0.465041 | 2.4:-17108561 | None:intergenic |
| CTTTGGTTAAATTTGACTGA+TGG | 0.465186 | 2.4:+17102206 | MS.gene88388:CDS |
| ATTGTCTGTCTTGTCACATT+GGG | 0.467678 | 2.4:-17102183 | None:intergenic |
| GATCGTATCTTGTGTTCATC+GGG | 0.468245 | 2.4:+17106887 | MS.gene88388:CDS |
| TAAAGATAGCCCATGTCCTT+GGG | 0.473415 | 2.4:-17109506 | None:intergenic |
| AGAAAGCTCACCGCAGATGT+AGG | 0.474579 | 2.4:-17105852 | None:intergenic |
| ACTGCATCAAACACTACATC+TGG | 0.478137 | 2.4:+17109092 | MS.gene88388:CDS |
| TGAAGACATTGTTTCACAGC+TGG | 0.478207 | 2.4:+17108565 | MS.gene88388:CDS |
| CAAGCTTCTAAAGGCACCCT+TGG | 0.478820 | 2.4:-17107238 | None:intergenic |
| CTAGCTCACATGGAGGATCC+AGG | 0.478997 | 2.4:+17108674 | MS.gene88388:CDS |
| AGGTCCACAGTTGGATCAGC+AGG | 0.481485 | 2.4:-17105353 | None:intergenic |
| CCAAGAAAGTGGGCAGGAAG+TGG | 0.484253 | 2.4:+17105011 | MS.gene88388:CDS |
| ATGTGCAACACCAGATAATC+CGG | 0.485168 | 2.4:-17107790 | None:intergenic |
| AAGTCTAAAGAAGGCATTTG+AGG | 0.485504 | 2.4:+17105325 | MS.gene88388:CDS |
| CGCAAATTTGTTATGGAGGA+GGG | 0.487406 | 2.4:+17107814 | MS.gene88388:CDS |
| CATTAATCCTCCCAAGGACA+TGG | 0.488021 | 2.4:+17109496 | MS.gene88388:CDS |
| TTTAGTTGCTGCTAGCCATC+CGG | 0.489423 | 2.4:+17106377 | MS.gene88388:CDS |
| ATTTCTGAATCATCCTCAAC+GGG | 0.489963 | 2.4:-17108530 | None:intergenic |
| CTGATGGAGTGATCCTTTGT+GGG | 0.494763 | 2.4:+17102222 | MS.gene88388:CDS |
| TTGACCAATCCTGTGTATCC+AGG | 0.496798 | 2.4:-17105048 | None:intergenic |
| ATTTGTTATGGAGGAGGGAT+GGG | 0.498587 | 2.4:+17107819 | MS.gene88388:CDS |
| GGGAAGAGCTTCTACCCGAT+GGG | 0.499731 | 2.4:+17108005 | MS.gene88388:CDS |
| GGGGAAGAGCTTCTACCCGA+TGG | 0.504156 | 2.4:+17108004 | MS.gene88388:CDS |
| TGGGAGCATTTCCACCCAGT+TGG | 0.505198 | 2.4:-17102164 | None:intergenic |
| TCAAGATGACGTTGCTCGAA+AGG | 0.505759 | 2.4:+17108869 | MS.gene88388:CDS |
| CTTGCAAGGCAAGCTTCTAA+AGG | 0.506121 | 2.4:-17107247 | None:intergenic |
| ATGGGAATTGTTAGCCACAT+TGG | 0.506553 | 2.4:+17109386 | MS.gene88388:CDS |
| TATGAAAGTGAAACATAGTC+AGG | 0.507916 | 2.4:-17101852 | None:intergenic |
| GCGCAAATTTGTTATGGAGG+AGG | 0.509069 | 2.4:+17107813 | MS.gene88388:CDS |
| AGATCGTATCTTGTGTTCAT+CGG | 0.510145 | 2.4:+17106886 | MS.gene88388:CDS |
| TTGTGATAGGTCTGGTGATG+AGG | 0.514427 | 2.4:+17107207 | MS.gene88388:intron |
| CAGCATTAGCACGCTCCACT+TGG | 0.514650 | 2.4:-17106817 | None:intergenic |
| GCTCCCATTTCGAGAGGGCG+TGG | 0.514907 | 2.4:+17108795 | MS.gene88388:CDS |
| CGGGAGCTGAGAAGCTTGCA+AGG | 0.515232 | 2.4:-17107261 | None:intergenic |
| GCTAGATGCTGTGCTAAAAG+TGG | 0.518555 | 2.4:-17104051 | None:intergenic |
| TTCAAATACTAGGAGCAAGA+AGG | 0.522847 | 2.4:+17106330 | MS.gene88388:intron |
| TGCTAGATGCGGGTGCTGAA+CGG | 0.523169 | 2.4:+17102048 | MS.gene88388:CDS |
| GCTATAAATACATCAAATGC+TGG | 0.525024 | 2.4:+17108626 | MS.gene88388:CDS |
| TATAAACCAAAGTCTAAAGA+AGG | 0.526780 | 2.4:+17105316 | MS.gene88388:CDS |
| TCCAACACATTATCATCCTC+CGG | 0.529571 | 2.4:-17104027 | None:intergenic |
| ATGTTGGAAACGGATGCATC+AGG | 0.530519 | 2.4:-17109062 | None:intergenic |
| TACACAGGATTGGTCAATCT+AGG | 0.531009 | 2.4:+17105054 | MS.gene88388:CDS |
| TTCTGTGGAATTACCGGAGA+AGG | 0.533894 | 2.4:+17101878 | MS.gene88388:CDS |
| AATTTGTTATGGAGGAGGGA+TGG | 0.534308 | 2.4:+17107818 | MS.gene88388:CDS |
| GATTGTCTGTCTTGTCACAT+TGG | 0.534886 | 2.4:-17102184 | None:intergenic |
| AGTAGCATCCATGTTGGAAA+CGG | 0.535832 | 2.4:-17109072 | None:intergenic |
| TGGGCAACAAATACCTTCTC+CGG | 0.537224 | 2.4:-17101891 | None:intergenic |
| ACAATGTCTTCATTGGCTAA+AGG | 0.540872 | 2.4:-17108554 | None:intergenic |
| ACTGCTGATCTGGAGGCAGC+AGG | 0.541599 | 2.4:+17102338 | MS.gene88388:CDS |
| TTCACTTTCATATCCTTCTG+TGG | 0.545000 | 2.4:+17101863 | MS.gene88388:CDS |
| GTGATGAGGTTGTACGTCCA+AGG | 0.550600 | 2.4:+17107221 | MS.gene88388:CDS |
| TCAAATACTAGGAGCAAGAA+GGG | 0.551715 | 2.4:+17106331 | MS.gene88388:intron |
| TAATGCTGGGAAAACTGAAC+TGG | 0.553010 | 2.4:+17106832 | MS.gene88388:CDS |
| AAGTGGAGCGTGCTAATGCT+GGG | 0.554489 | 2.4:+17106819 | MS.gene88388:CDS |
| TACCCACTCGCTGTAAAGCT+CGG | 0.555270 | 2.4:+17102308 | MS.gene88388:CDS |
| TGGACCTGGATACACAGGAT+TGG | 0.555748 | 2.4:+17105044 | MS.gene88388:CDS |
| TGATGCATCCGTTTCCAACA+TGG | 0.558113 | 2.4:+17109064 | MS.gene88388:CDS |
| ATCAAATGCTGGAGTAGAAG+AGG | 0.558286 | 2.4:+17108637 | MS.gene88388:CDS |
| AATATAACCTGTAGGTCGGC+TGG | 0.558667 | 2.4:+17107754 | MS.gene88388:intron |
| ATCAGTCACATGCGTAGCAA+AGG | 0.558895 | 2.4:+17107971 | MS.gene88388:CDS |
| ATATTCTGTTCCACAAGTTG+AGG | 0.563078 | 2.4:+17105719 | MS.gene88388:CDS |
| GGAATAGAATCCAAGAAAGT+GGG | 0.563834 | 2.4:+17105001 | MS.gene88388:CDS |
| AACTATTACTGCTGATCTGG+AGG | 0.565893 | 2.4:+17102331 | MS.gene88388:CDS |
| GGAGCATTTCCACCCAGTTG+GGG | 0.566321 | 2.4:-17102162 | None:intergenic |
| TCCGGAGGATGATAATGTGT+TGG | 0.568706 | 2.4:+17104026 | MS.gene88388:CDS |
| GATGCTATATTGCTAGATGC+GGG | 0.569791 | 2.4:+17102038 | MS.gene88388:CDS |
| AATGATGCTGATTTATCCGA+TGG | 0.571407 | 2.4:+17109119 | MS.gene88388:CDS |
| CACATTATCATCCTCCGGAT+AGG | 0.573405 | 2.4:-17104022 | None:intergenic |
| CCACTTGGTCAAGAAAATGA+AGG | 0.579718 | 2.4:-17106802 | None:intergenic |
| GACTTGGTTACTAGCTCACA+TGG | 0.583662 | 2.4:+17108664 | MS.gene88388:CDS |
| GCTGATTTATCCGATGGAGG+AGG | 0.586042 | 2.4:+17109125 | MS.gene88388:CDS |
| CAACTCACTTCCTCCTCCAT+CGG | 0.586340 | 2.4:-17109135 | None:intergenic |
| TAGAATCCAAGAAAGTGGGC+AGG | 0.591771 | 2.4:+17105005 | MS.gene88388:CDS |
| GTAGCAAAGGTCATCAACCT+GGG | 0.592394 | 2.4:+17107984 | MS.gene88388:CDS |
| TGATGCTATATTGCTAGATG+CGG | 0.593007 | 2.4:+17102037 | MS.gene88388:CDS |
| CATCTTGAAAGACGGTAGAT+GGG | 0.593357 | 2.4:+17109442 | MS.gene88388:CDS |
| TATTTCTGAATCATCCTCAA+CGG | 0.593804 | 2.4:-17108531 | None:intergenic |
| ACATTGAGAAAGCAACAGAC+TGG | 0.594075 | 2.4:+17109027 | MS.gene88388:CDS |
| AGATGCGGGTGCTGAACGGA+AGG | 0.595022 | 2.4:+17102052 | MS.gene88388:CDS |
| TCGGGTAGAAGCTCTTCCCC+AGG | 0.597036 | 2.4:-17108001 | None:intergenic |
| CATGCGCAAATTTGTTATGG+AGG | 0.598160 | 2.4:+17107810 | MS.gene88388:CDS |
| ATGCATCTGTAGGTATTGAT+GGG | 0.598292 | 2.4:+17101775 | MS.gene88388:intron |
| TGCATGTTGAGGTCCACAGT+TGG | 0.598934 | 2.4:-17105362 | None:intergenic |
| TTCTCCGGTAATTCCACAGA+AGG | 0.599224 | 2.4:-17101876 | None:intergenic |
| GTAGCATATCAACTTTCGAC+TGG | 0.599715 | 2.4:-17108833 | None:intergenic |
| CTAGTACATACCTCAACTTG+TGG | 0.600269 | 2.4:-17105729 | None:intergenic |
| GAAAGCAGAGAAACTTTCTG+AGG | 0.604681 | 2.4:+17107098 | MS.gene88388:CDS |
| TTTCTTACAACTGCATGTTG+AGG | 0.604843 | 2.4:-17105373 | None:intergenic |
| TCCCATAAGTCGATATCCTG+TGG | 0.606683 | 2.4:-17109369 | None:intergenic |
| GTTCCGAGCTTTACAGCGAG+TGG | 0.609506 | 2.4:-17102311 | None:intergenic |
| ACCAAACTTGAAACTCCTTG+CGG | 0.609907 | 2.4:-17106858 | None:intergenic |
| TTCCGAGCTTTACAGCGAGT+GGG | 0.610350 | 2.4:-17102310 | None:intergenic |
| GGCTTCCATTAATCCTCCCA+AGG | 0.611522 | 2.4:+17109490 | MS.gene88388:CDS |
| TAATCAGACTGAAATGACTA+CGG | 0.613034 | 2.4:+17104942 | MS.gene88388:intron |
| AAAGCTCACCGCAGATGTAG+GGG | 0.614534 | 2.4:-17105850 | None:intergenic |
| GAGTAGAAGAGGCAATGACT+TGG | 0.614884 | 2.4:+17108648 | MS.gene88388:CDS |
| AAAGCAGAGAAACTTTCTGA+GGG | 0.617857 | 2.4:+17107099 | MS.gene88388:CDS |
| GGAAGGAGCAAGTTGCAGCA+TGG | 0.618325 | 2.4:+17102069 | MS.gene88388:CDS |
| ATTAATCCTCCCAAGGACAT+GGG | 0.630490 | 2.4:+17109497 | MS.gene88388:CDS |
| TGCAAGCTTCTCAGCTCCCG+AGG | 0.630850 | 2.4:+17107264 | MS.gene88388:CDS |
| AAACTGAACTGGATCCCGCA+AGG | 0.633426 | 2.4:+17106843 | MS.gene88388:CDS |
| GGAAGAGCTTCTACCCGATG+GGG | 0.634967 | 2.4:+17108006 | MS.gene88388:CDS |
| AATTTACAGCAAATTGACAA+TGG | 0.637927 | 2.4:+17102128 | MS.gene88388:CDS |
| TCGAAAGGCACTGATAGCAT+CGG | 0.644009 | 2.4:+17108884 | MS.gene88388:CDS |
| TGCAAGCACCCCTACATCTG+CGG | 0.644553 | 2.4:+17105842 | MS.gene88388:CDS |
| GAGCATTTCCACCCAGTTGG+GGG | 0.645122 | 2.4:-17102161 | None:intergenic |
| GTTGCACACATCTTGAAAGA+CGG | 0.646923 | 2.4:+17109434 | MS.gene88388:CDS |
| TTGCATGAAGCAACTAACAA+AGG | 0.649182 | 2.4:+17106962 | MS.gene88388:CDS |
| ATTGATGCTCCCATTTCGAG+AGG | 0.654004 | 2.4:+17108789 | MS.gene88388:CDS |
| TGCATCTGTAGGTATTGATG+GGG | 0.655166 | 2.4:+17101776 | MS.gene88388:intron |
| AGATAGCCCATGTCCTTGGG+AGG | 0.656852 | 2.4:-17109503 | None:intergenic |
| GATGCTGATTTATCCGATGG+AGG | 0.658748 | 2.4:+17109122 | MS.gene88388:CDS |
| GGCTCCTGCTGATCCAACTG+TGG | 0.659783 | 2.4:+17105349 | MS.gene88388:CDS |
| TGAAAATACAGCTTGCATAG+TGG | 0.660206 | 2.4:-17105187 | None:intergenic |
| TCTAAAGAAGGCATTTGAGG+AGG | 0.662919 | 2.4:+17105328 | MS.gene88388:CDS |
| GAAGAGCTTCTACCCGATGG+GGG | 0.664722 | 2.4:+17108007 | MS.gene88388:CDS |
| TTGATGCTCCCATTTCGAGA+GGG | 0.665706 | 2.4:+17108790 | MS.gene88388:CDS |
| ATAGTGACCGCAGTGTGTTG+AGG | 0.668427 | 2.4:-17109411 | None:intergenic |
| TGATGAGGTTGTACGTCCAA+GGG | 0.669779 | 2.4:+17107222 | MS.gene88388:CDS |
| TGATGCAGTAGCATCCATGT+TGG | 0.673342 | 2.4:-17109078 | None:intergenic |
| TCTAGGACGAAACTTGCACA+TGG | 0.681126 | 2.4:+17105681 | MS.gene88388:intron |
| GCATAGTAGAAAATTCCGGA+TGG | 0.692803 | 2.4:-17106392 | None:intergenic |
| GTGTTGCACAGTACCCGTTG+AGG | 0.709727 | 2.4:+17108517 | MS.gene88388:intron |
| TAGCAAAGGTCATCAACCTG+GGG | 0.714337 | 2.4:+17107985 | MS.gene88388:CDS |
| GCATCTGTAGGTATTGATGG+GGG | 0.718341 | 2.4:+17101777 | MS.gene88388:intron |
| ATGGAGTGATCCTTTGTGGG+AGG | 0.719607 | 2.4:+17102225 | MS.gene88388:CDS |
| ATTGGAACCTCAACACACTG+CGG | 0.742727 | 2.4:+17109404 | MS.gene88388:CDS |
| AGTGTGTTGAGGTTCCAATG+TGG | 0.787141 | 2.4:-17109400 | None:intergenic |
| TTGGTTACTAGCTCACATGG+AGG | 0.794926 | 2.4:+17108667 | MS.gene88388:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 17101644 | 17109547 | 17101644 | ID=MS.gene88388 |
| chr2.4 | mRNA | 17101644 | 17109547 | 17101644 | ID=MS.gene88388.t1;Parent=MS.gene88388 |
| chr2.4 | exon | 17101644 | 17101647 | 17101644 | ID=MS.gene88388.t1.exon1;Parent=MS.gene88388.t1 |
| chr2.4 | CDS | 17101644 | 17101647 | 17101644 | ID=cds.MS.gene88388.t1;Parent=MS.gene88388.t1 |
| chr2.4 | exon | 17101787 | 17101899 | 17101787 | ID=MS.gene88388.t1.exon2;Parent=MS.gene88388.t1 |
| chr2.4 | CDS | 17101787 | 17101899 | 17101787 | ID=cds.MS.gene88388.t1;Parent=MS.gene88388.t1 |
| chr2.4 | exon | 17102023 | 17102359 | 17102023 | ID=MS.gene88388.t1.exon3;Parent=MS.gene88388.t1 |
| chr2.4 | CDS | 17102023 | 17102359 | 17102023 | ID=cds.MS.gene88388.t1;Parent=MS.gene88388.t1 |
| chr2.4 | exon | 17104013 | 17104107 | 17104013 | ID=MS.gene88388.t1.exon4;Parent=MS.gene88388.t1 |
| chr2.4 | CDS | 17104013 | 17104107 | 17104013 | ID=cds.MS.gene88388.t1;Parent=MS.gene88388.t1 |
| chr2.4 | exon | 17104949 | 17105082 | 17104949 | ID=MS.gene88388.t1.exon5;Parent=MS.gene88388.t1 |
| chr2.4 | CDS | 17104949 | 17105082 | 17104949 | ID=cds.MS.gene88388.t1;Parent=MS.gene88388.t1 |
| chr2.4 | exon | 17105173 | 17105229 | 17105173 | ID=MS.gene88388.t1.exon6;Parent=MS.gene88388.t1 |
| chr2.4 | CDS | 17105173 | 17105229 | 17105173 | ID=cds.MS.gene88388.t1;Parent=MS.gene88388.t1 |
| chr2.4 | exon | 17105310 | 17105387 | 17105310 | ID=MS.gene88388.t1.exon7;Parent=MS.gene88388.t1 |
| chr2.4 | CDS | 17105310 | 17105387 | 17105310 | ID=cds.MS.gene88388.t1;Parent=MS.gene88388.t1 |
| chr2.4 | exon | 17105686 | 17105740 | 17105686 | ID=MS.gene88388.t1.exon8;Parent=MS.gene88388.t1 |
| chr2.4 | CDS | 17105686 | 17105740 | 17105686 | ID=cds.MS.gene88388.t1;Parent=MS.gene88388.t1 |
| chr2.4 | exon | 17105822 | 17105863 | 17105822 | ID=MS.gene88388.t1.exon9;Parent=MS.gene88388.t1 |
| chr2.4 | CDS | 17105822 | 17105863 | 17105822 | ID=cds.MS.gene88388.t1;Parent=MS.gene88388.t1 |
| chr2.4 | exon | 17106342 | 17106422 | 17106342 | ID=MS.gene88388.t1.exon10;Parent=MS.gene88388.t1 |
| chr2.4 | CDS | 17106342 | 17106422 | 17106342 | ID=cds.MS.gene88388.t1;Parent=MS.gene88388.t1 |
| chr2.4 | exon | 17106785 | 17106983 | 17106785 | ID=MS.gene88388.t1.exon11;Parent=MS.gene88388.t1 |
| chr2.4 | CDS | 17106785 | 17106983 | 17106785 | ID=cds.MS.gene88388.t1;Parent=MS.gene88388.t1 |
| chr2.4 | exon | 17107073 | 17107130 | 17107073 | ID=MS.gene88388.t1.exon12;Parent=MS.gene88388.t1 |
| chr2.4 | CDS | 17107073 | 17107130 | 17107073 | ID=cds.MS.gene88388.t1;Parent=MS.gene88388.t1 |
| chr2.4 | exon | 17107216 | 17107338 | 17107216 | ID=MS.gene88388.t1.exon13;Parent=MS.gene88388.t1 |
| chr2.4 | CDS | 17107216 | 17107338 | 17107216 | ID=cds.MS.gene88388.t1;Parent=MS.gene88388.t1 |
| chr2.4 | exon | 17107768 | 17107856 | 17107768 | ID=MS.gene88388.t1.exon14;Parent=MS.gene88388.t1 |
| chr2.4 | CDS | 17107768 | 17107856 | 17107768 | ID=cds.MS.gene88388.t1;Parent=MS.gene88388.t1 |
| chr2.4 | exon | 17107939 | 17108028 | 17107939 | ID=MS.gene88388.t1.exon15;Parent=MS.gene88388.t1 |
| chr2.4 | CDS | 17107939 | 17108028 | 17107939 | ID=cds.MS.gene88388.t1;Parent=MS.gene88388.t1 |
| chr2.4 | exon | 17108528 | 17108695 | 17108528 | ID=MS.gene88388.t1.exon16;Parent=MS.gene88388.t1 |
| chr2.4 | CDS | 17108528 | 17108695 | 17108528 | ID=cds.MS.gene88388.t1;Parent=MS.gene88388.t1 |
| chr2.4 | exon | 17108787 | 17108905 | 17108787 | ID=MS.gene88388.t1.exon17;Parent=MS.gene88388.t1 |
| chr2.4 | CDS | 17108787 | 17108905 | 17108787 | ID=cds.MS.gene88388.t1;Parent=MS.gene88388.t1 |
| chr2.4 | exon | 17109020 | 17109149 | 17109020 | ID=MS.gene88388.t1.exon18;Parent=MS.gene88388.t1 |
| chr2.4 | CDS | 17109020 | 17109149 | 17109020 | ID=cds.MS.gene88388.t1;Parent=MS.gene88388.t1 |
| chr2.4 | exon | 17109276 | 17109547 | 17109276 | ID=MS.gene88388.t1.exon19;Parent=MS.gene88388.t1 |
| chr2.4 | CDS | 17109276 | 17109547 | 17109276 | ID=cds.MS.gene88388.t1;Parent=MS.gene88388.t1 |
| Gene Sequence |
| Protein sequence |
