Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88597.t1 | XP_003589749.1 | 96.8 | 317 | 9 | 1 | 1 | 317 | 5 | 320 | 2.10E-178 | 634.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88597.t1 | Q9SIS4 | 61.3 | 315 | 100 | 2 | 5 | 317 | 1 | 295 | 1.3e-104 | 380.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88597.t1 | G7IBG6 | 96.8 | 317 | 9 | 1 | 1 | 317 | 5 | 320 | 1.5e-178 | 634.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene88597 | 0.813821 | 2.11E-51 | -1.69E-46 |
| MS.gene049813 | MS.gene88597 | 0.815859 | 7.45E-52 | -1.69E-46 |
| MS.gene051440 | MS.gene88597 | 0.833336 | 5.66E-56 | -1.69E-46 |
| MS.gene051973 | MS.gene88597 | 0.807734 | 4.37E-50 | -1.69E-46 |
| MS.gene052211 | MS.gene88597 | 0.818343 | 2.06E-52 | -1.69E-46 |
| MS.gene05240 | MS.gene88597 | 0.831873 | 1.30E-55 | -1.69E-46 |
| MS.gene052606 | MS.gene88597 | 0.806713 | 7.20E-50 | -1.69E-46 |
| MS.gene053097 | MS.gene88597 | 0.800379 | 1.48E-48 | -1.69E-46 |
| MS.gene053406 | MS.gene88597 | 0.805254 | 1.46E-49 | -1.69E-46 |
| MS.gene054146 | MS.gene88597 | 0.829567 | 4.79E-55 | -1.69E-46 |
| MS.gene054147 | MS.gene88597 | 0.805767 | 1.14E-49 | -1.69E-46 |
| MS.gene054277 | MS.gene88597 | 0.818663 | 1.74E-52 | -1.69E-46 |
| MS.gene054742 | MS.gene88597 | 0.825719 | 4.02E-54 | -1.69E-46 |
| MS.gene055240 | MS.gene88597 | 0.821621 | 3.66E-53 | -1.69E-46 |
| MS.gene055977 | MS.gene88597 | 0.816454 | 5.48E-52 | -1.69E-46 |
| MS.gene056218 | MS.gene88597 | 0.808908 | 2.46E-50 | -1.69E-46 |
| MS.gene056590 | MS.gene88597 | 0.812875 | 3.40E-51 | -1.69E-46 |
| MS.gene056591 | MS.gene88597 | 0.812024 | 5.22E-51 | -1.69E-46 |
| MS.gene056680 | MS.gene88597 | 0.801408 | 9.13E-49 | -1.69E-46 |
| MS.gene056694 | MS.gene88597 | 0.802849 | 4.61E-49 | -1.69E-46 |
| MS.gene056748 | MS.gene88597 | 0.814058 | 1.87E-51 | -1.69E-46 |
| MS.gene056920 | MS.gene88597 | 0.807039 | 6.14E-50 | -1.69E-46 |
| MS.gene056988 | MS.gene88597 | 0.801262 | 9.78E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene88597 | 0.819618 | 1.06E-52 | -1.69E-46 |
| MS.gene059892 | MS.gene88597 | 0.812254 | 4.65E-51 | -1.69E-46 |
| MS.gene059955 | MS.gene88597 | 0.803861 | 2.85E-49 | -1.69E-46 |
| MS.gene060087 | MS.gene88597 | 0.848909 | 4.54E-60 | -1.69E-46 |
| MS.gene060358 | MS.gene88597 | 0.821943 | 3.09E-53 | -1.69E-46 |
| MS.gene061038 | MS.gene88597 | 0.812369 | 4.39E-51 | -1.69E-46 |
| MS.gene061044 | MS.gene88597 | 0.800833 | 1.20E-48 | -1.69E-46 |
| MS.gene061092 | MS.gene88597 | 0.810281 | 1.25E-50 | -1.69E-46 |
| MS.gene061094 | MS.gene88597 | 0.814689 | 1.36E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88597.t1 | MTR_1g038810 | 96.845 | 317 | 9 | 1 | 1 | 317 | 5 | 320 | 0.0 | 635 |
| MS.gene88597.t1 | MTR_1g038810 | 95.268 | 317 | 10 | 2 | 1 | 317 | 5 | 316 | 0.0 | 620 |
| MS.gene88597.t1 | MTR_6g072010 | 49.488 | 293 | 125 | 4 | 36 | 317 | 15 | 295 | 5.19e-94 | 284 |
| MS.gene88597.t1 | MTR_6g072010 | 49.488 | 293 | 125 | 4 | 36 | 317 | 26 | 306 | 1.45e-93 | 283 |
| MS.gene88597.t1 | MTR_7g100070 | 38.690 | 336 | 144 | 8 | 6 | 317 | 11 | 308 | 1.42e-62 | 205 |
| MS.gene88597.t1 | MTR_7g100070 | 38.279 | 337 | 145 | 8 | 6 | 317 | 11 | 309 | 3.05e-62 | 204 |
| MS.gene88597.t1 | MTR_7g100070 | 38.279 | 337 | 145 | 8 | 6 | 317 | 51 | 349 | 8.00e-62 | 204 |
| MS.gene88597.t1 | MTR_6g009260 | 42.007 | 269 | 137 | 7 | 57 | 317 | 53 | 310 | 1.23e-60 | 200 |
| MS.gene88597.t1 | MTR_8g091360 | 54.658 | 161 | 67 | 2 | 160 | 317 | 304 | 461 | 3.13e-50 | 173 |
| MS.gene88597.t1 | MTR_8g091360 | 48.780 | 82 | 41 | 1 | 49 | 130 | 130 | 210 | 3.52e-17 | 82.0 |
| MS.gene88597.t1 | MTR_8g091360 | 54.037 | 161 | 68 | 2 | 160 | 317 | 304 | 461 | 3.66e-49 | 172 |
| MS.gene88597.t1 | MTR_8g091360 | 48.780 | 82 | 41 | 1 | 49 | 130 | 130 | 210 | 4.42e-17 | 82.0 |
| MS.gene88597.t1 | MTR_5g006820 | 53.741 | 147 | 65 | 1 | 174 | 317 | 354 | 500 | 3.90e-48 | 170 |
| MS.gene88597.t1 | MTR_5g006820 | 54.667 | 75 | 33 | 1 | 56 | 130 | 90 | 163 | 5.36e-18 | 85.1 |
| MS.gene88597.t1 | MTR_1g103330 | 54.422 | 147 | 63 | 2 | 175 | 317 | 315 | 461 | 1.24e-47 | 168 |
| MS.gene88597.t1 | MTR_1g103330 | 40.984 | 122 | 59 | 4 | 18 | 130 | 44 | 161 | 5.17e-19 | 87.8 |
| MS.gene88597.t1 | MTR_1g071680 | 55.102 | 147 | 62 | 2 | 175 | 317 | 288 | 434 | 1.70e-47 | 167 |
| MS.gene88597.t1 | MTR_1g071680 | 55.263 | 76 | 33 | 1 | 55 | 130 | 87 | 161 | 4.82e-19 | 87.8 |
| MS.gene88597.t1 | MTR_1g097690 | 53.901 | 141 | 65 | 0 | 177 | 317 | 354 | 494 | 6.17e-47 | 165 |
| MS.gene88597.t1 | MTR_1g097690 | 37.705 | 122 | 65 | 4 | 16 | 131 | 56 | 172 | 5.09e-15 | 75.9 |
| MS.gene88597.t1 | MTR_6g042240 | 56.028 | 141 | 62 | 0 | 177 | 317 | 372 | 512 | 2.41e-46 | 166 |
| MS.gene88597.t1 | MTR_6g042240 | 40.367 | 109 | 54 | 3 | 56 | 154 | 94 | 201 | 1.14e-16 | 80.9 |
| MS.gene88597.t1 | MTR_6g042240 | 56.028 | 141 | 62 | 0 | 177 | 317 | 332 | 472 | 2.58e-46 | 165 |
| MS.gene88597.t1 | MTR_6g042240 | 40.367 | 109 | 54 | 3 | 56 | 154 | 54 | 161 | 9.50e-17 | 81.3 |
| MS.gene88597.t1 | MTR_7g095260 | 53.741 | 147 | 64 | 2 | 175 | 317 | 236 | 382 | 3.03e-46 | 163 |
| MS.gene88597.t1 | MTR_7g095260 | 53.947 | 76 | 34 | 1 | 55 | 130 | 35 | 109 | 8.42e-18 | 84.0 |
| MS.gene88597.t1 | MTR_6g042240 | 56.028 | 141 | 62 | 0 | 177 | 317 | 385 | 525 | 3.95e-46 | 165 |
| MS.gene88597.t1 | MTR_6g042240 | 40.367 | 109 | 54 | 3 | 56 | 154 | 107 | 214 | 1.35e-16 | 80.9 |
| MS.gene88597.t1 | MTR_7g095260 | 53.741 | 147 | 64 | 2 | 175 | 317 | 288 | 434 | 4.03e-46 | 164 |
| MS.gene88597.t1 | MTR_7g095260 | 36.601 | 153 | 72 | 4 | 2 | 130 | 10 | 161 | 9.22e-19 | 87.0 |
| MS.gene88597.t1 | MTR_1g097690 | 53.191 | 141 | 66 | 0 | 177 | 317 | 354 | 494 | 8.98e-46 | 164 |
| MS.gene88597.t1 | MTR_1g097690 | 37.705 | 122 | 65 | 4 | 16 | 131 | 56 | 172 | 7.78e-15 | 75.5 |
| MS.gene88597.t1 | MTR_8g043480 | 50.340 | 147 | 70 | 1 | 174 | 317 | 45 | 191 | 4.99e-45 | 155 |
| MS.gene88597.t1 | MTR_8g043480 | 50.340 | 147 | 70 | 1 | 174 | 317 | 175 | 321 | 9.26e-44 | 155 |
| MS.gene88597.t1 | MTR_8g043480 | 48.649 | 74 | 37 | 1 | 57 | 130 | 7 | 79 | 5.92e-15 | 75.5 |
| MS.gene88597.t1 | MTR_8g043480 | 50.340 | 147 | 70 | 1 | 174 | 317 | 240 | 386 | 1.75e-43 | 156 |
| MS.gene88597.t1 | MTR_8g043480 | 45.238 | 84 | 45 | 1 | 47 | 130 | 62 | 144 | 2.65e-15 | 76.6 |
| MS.gene88597.t1 | MTR_4g098850 | 43.716 | 183 | 100 | 2 | 135 | 317 | 554 | 733 | 9.97e-40 | 148 |
| MS.gene88597.t1 | MTR_4g098850 | 46.000 | 100 | 54 | 0 | 218 | 317 | 2 | 101 | 2.98e-21 | 94.7 |
| MS.gene88597.t1 | MTR_4g098850 | 38.621 | 145 | 72 | 3 | 2 | 133 | 286 | 426 | 1.42e-19 | 89.7 |
| MS.gene88597.t1 | MTR_5g014090 | 49.645 | 141 | 71 | 0 | 177 | 317 | 370 | 510 | 2.05e-37 | 140 |
| MS.gene88597.t1 | MTR_5g014090 | 46.835 | 79 | 41 | 1 | 56 | 134 | 102 | 179 | 7.31e-17 | 81.3 |
| MS.gene88597.t1 | MTR_5g014090 | 49.645 | 141 | 71 | 0 | 177 | 317 | 370 | 510 | 6.45e-37 | 139 |
| MS.gene88597.t1 | MTR_5g014090 | 46.835 | 79 | 41 | 1 | 56 | 134 | 102 | 179 | 9.18e-17 | 81.3 |
| MS.gene88597.t1 | MTR_1g078100 | 22.866 | 328 | 173 | 10 | 20 | 317 | 214 | 491 | 2.59e-14 | 73.9 |
| MS.gene88597.t1 | MTR_1g078100 | 22.866 | 328 | 173 | 10 | 20 | 317 | 225 | 502 | 3.24e-14 | 73.6 |
| MS.gene88597.t1 | MTR_1g078100 | 22.892 | 332 | 168 | 11 | 20 | 317 | 494 | 771 | 4.01e-14 | 73.6 |
| MS.gene88597.t1 | MTR_6g092670 | 28.655 | 171 | 93 | 4 | 174 | 317 | 643 | 811 | 8.81e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88597.t1 | AT2G01900 | 61.514 | 317 | 100 | 3 | 3 | 317 | 7 | 303 | 1.85e-132 | 383 |
| MS.gene88597.t1 | AT2G01900 | 61.587 | 315 | 99 | 3 | 5 | 317 | 1 | 295 | 4.03e-132 | 382 |
| MS.gene88597.t1 | AT2G01900 | 61.587 | 315 | 99 | 3 | 5 | 317 | 1 | 295 | 8.58e-132 | 381 |
| MS.gene88597.t1 | AT2G37440 | 44.012 | 334 | 165 | 6 | 2 | 317 | 7 | 336 | 1.39e-80 | 253 |
| MS.gene88597.t1 | AT2G37440 | 44.012 | 334 | 165 | 6 | 2 | 317 | 7 | 336 | 1.39e-80 | 253 |
| MS.gene88597.t1 | AT2G37440 | 46.182 | 275 | 109 | 5 | 62 | 317 | 1 | 255 | 9.24e-69 | 219 |
| MS.gene88597.t1 | AT5G65090 | 50.000 | 180 | 83 | 2 | 145 | 317 | 166 | 345 | 9.60e-52 | 177 |
| MS.gene88597.t1 | AT5G65090 | 48.052 | 77 | 39 | 1 | 55 | 131 | 5 | 80 | 4.56e-16 | 79.0 |
| MS.gene88597.t1 | AT5G65090 | 50.000 | 180 | 83 | 2 | 145 | 317 | 229 | 408 | 2.39e-51 | 177 |
| MS.gene88597.t1 | AT5G65090 | 44.318 | 88 | 48 | 1 | 44 | 131 | 57 | 143 | 5.48e-16 | 79.0 |
| MS.gene88597.t1 | AT5G65090 | 50.000 | 180 | 83 | 2 | 145 | 317 | 229 | 408 | 2.39e-51 | 177 |
| MS.gene88597.t1 | AT5G65090 | 44.318 | 88 | 48 | 1 | 44 | 131 | 57 | 143 | 5.48e-16 | 79.0 |
| MS.gene88597.t1 | AT1G05470 | 54.422 | 147 | 63 | 2 | 175 | 317 | 349 | 495 | 2.17e-48 | 171 |
| MS.gene88597.t1 | AT1G05470 | 54.545 | 77 | 34 | 1 | 56 | 132 | 88 | 163 | 6.41e-20 | 90.9 |
| MS.gene88597.t1 | AT1G05470 | 54.422 | 147 | 63 | 2 | 175 | 317 | 349 | 495 | 2.17e-48 | 171 |
| MS.gene88597.t1 | AT1G05470 | 54.545 | 77 | 34 | 1 | 56 | 132 | 88 | 163 | 6.41e-20 | 90.9 |
| MS.gene88597.t1 | AT2G32010 | 55.102 | 147 | 62 | 2 | 175 | 317 | 326 | 472 | 2.22e-48 | 171 |
| MS.gene88597.t1 | AT2G32010 | 54.667 | 75 | 33 | 1 | 56 | 130 | 87 | 160 | 8.82e-20 | 90.1 |
| MS.gene88597.t1 | AT2G32010 | 55.102 | 147 | 62 | 2 | 175 | 317 | 326 | 472 | 2.22e-48 | 171 |
| MS.gene88597.t1 | AT2G32010 | 54.667 | 75 | 33 | 1 | 56 | 130 | 87 | 160 | 8.82e-20 | 90.1 |
| MS.gene88597.t1 | AT2G32010 | 55.102 | 147 | 62 | 2 | 175 | 317 | 326 | 472 | 2.22e-48 | 171 |
| MS.gene88597.t1 | AT2G32010 | 54.667 | 75 | 33 | 1 | 56 | 130 | 87 | 160 | 8.82e-20 | 90.1 |
| MS.gene88597.t1 | AT2G32010 | 55.102 | 147 | 62 | 2 | 175 | 317 | 326 | 472 | 2.22e-48 | 171 |
| MS.gene88597.t1 | AT2G32010 | 54.667 | 75 | 33 | 1 | 56 | 130 | 87 | 160 | 8.82e-20 | 90.1 |
| MS.gene88597.t1 | AT3G63240 | 55.782 | 147 | 61 | 2 | 175 | 317 | 278 | 424 | 4.59e-47 | 166 |
| MS.gene88597.t1 | AT3G63240 | 58.571 | 70 | 28 | 1 | 61 | 130 | 89 | 157 | 5.86e-18 | 84.7 |
| MS.gene88597.t1 | AT3G63240 | 55.782 | 147 | 61 | 2 | 175 | 317 | 278 | 424 | 4.59e-47 | 166 |
| MS.gene88597.t1 | AT3G63240 | 58.571 | 70 | 28 | 1 | 61 | 130 | 89 | 157 | 5.86e-18 | 84.7 |
| MS.gene88597.t1 | AT1G34120 | 51.049 | 143 | 68 | 2 | 177 | 317 | 185 | 327 | 5.68e-43 | 153 |
| MS.gene88597.t1 | AT5G04980 | 45.963 | 161 | 84 | 1 | 160 | 317 | 143 | 303 | 1.47e-42 | 151 |
| MS.gene88597.t1 | AT5G04980 | 45.963 | 161 | 84 | 1 | 160 | 317 | 178 | 338 | 3.38e-42 | 151 |
| MS.gene88597.t1 | AT5G04980 | 54.412 | 68 | 30 | 1 | 58 | 125 | 7 | 73 | 7.01e-16 | 78.2 |
| MS.gene88597.t1 | AT5G04980 | 45.963 | 161 | 84 | 1 | 160 | 317 | 178 | 338 | 3.38e-42 | 151 |
| MS.gene88597.t1 | AT5G04980 | 54.412 | 68 | 30 | 1 | 58 | 125 | 7 | 73 | 7.01e-16 | 78.2 |
| MS.gene88597.t1 | AT5G04980 | 45.963 | 161 | 84 | 1 | 160 | 317 | 207 | 367 | 3.79e-42 | 152 |
| MS.gene88597.t1 | AT5G04980 | 46.809 | 94 | 42 | 3 | 32 | 125 | 17 | 102 | 3.17e-16 | 79.3 |
| MS.gene88597.t1 | AT1G34120 | 51.049 | 143 | 68 | 2 | 177 | 317 | 336 | 478 | 6.64e-42 | 153 |
| MS.gene88597.t1 | AT1G34120 | 47.368 | 76 | 39 | 1 | 56 | 131 | 97 | 171 | 8.80e-16 | 78.2 |
| MS.gene88597.t1 | AT1G34120 | 51.049 | 143 | 68 | 2 | 177 | 317 | 340 | 482 | 7.43e-42 | 153 |
| MS.gene88597.t1 | AT1G34120 | 47.368 | 76 | 39 | 1 | 56 | 131 | 101 | 175 | 9.60e-16 | 78.2 |
| MS.gene88597.t1 | AT1G34120 | 51.079 | 139 | 66 | 2 | 177 | 313 | 336 | 474 | 7.63e-41 | 148 |
| MS.gene88597.t1 | AT1G34120 | 47.368 | 76 | 39 | 1 | 56 | 131 | 97 | 171 | 7.48e-16 | 78.2 |
| MS.gene88597.t1 | AT1G71710 | 49.645 | 141 | 71 | 0 | 177 | 317 | 402 | 542 | 9.13e-41 | 150 |
| MS.gene88597.t1 | AT1G71710 | 42.574 | 101 | 53 | 2 | 31 | 131 | 94 | 189 | 1.23e-17 | 84.0 |
| MS.gene88597.t1 | AT1G71710 | 49.645 | 141 | 71 | 0 | 177 | 317 | 411 | 551 | 9.92e-41 | 150 |
| MS.gene88597.t1 | AT1G71710 | 42.574 | 101 | 53 | 2 | 31 | 131 | 103 | 198 | 1.24e-17 | 84.0 |
| MS.gene88597.t1 | AT1G34120 | 51.049 | 143 | 67 | 3 | 177 | 317 | 340 | 481 | 4.01e-40 | 148 |
| MS.gene88597.t1 | AT1G34120 | 47.368 | 76 | 39 | 1 | 56 | 131 | 101 | 175 | 9.59e-16 | 78.2 |
| MS.gene88597.t1 | AT4G18010 | 45.161 | 155 | 83 | 1 | 165 | 317 | 378 | 532 | 5.32e-39 | 145 |
| MS.gene88597.t1 | AT4G18010 | 34.503 | 171 | 67 | 4 | 5 | 131 | 12 | 181 | 1.77e-17 | 83.6 |
| MS.gene88597.t1 | AT4G18010 | 45.161 | 155 | 83 | 1 | 165 | 317 | 378 | 532 | 1.34e-38 | 144 |
| MS.gene88597.t1 | AT4G18010 | 34.503 | 171 | 67 | 4 | 5 | 131 | 12 | 181 | 1.62e-17 | 83.6 |
| MS.gene88597.t1 | AT1G65580 | 26.174 | 298 | 144 | 10 | 54 | 317 | 266 | 521 | 6.25e-17 | 82.0 |
| MS.gene88597.t1 | AT1G65580 | 26.174 | 298 | 144 | 10 | 54 | 317 | 532 | 787 | 6.72e-17 | 82.0 |
Find 56 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTTGATATCTATGTATT+TGG | 0.059903 | 1.4:-23500727 | MS.gene88597:CDS |
| TGTATCACTATGATCATTAA+TGG | 0.163498 | 1.4:+23500998 | None:intergenic |
| AAGTTCTACAGATCCTTTAT+TGG | 0.258601 | 1.4:-23501060 | MS.gene88597:CDS |
| TCATGATCAAGAATCTTTCT+TGG | 0.273995 | 1.4:+23499243 | None:intergenic |
| AGATAATTGATCATCATTAT+TGG | 0.274282 | 1.4:+23501034 | None:intergenic |
| ACTATGATCATTAATGGATT+TGG | 0.307634 | 1.4:+23501004 | None:intergenic |
| TGTGGCATCATGGGCTTCTT+AGG | 0.310282 | 1.4:-23500043 | MS.gene88597:CDS |
| GTGTGCAGTCATCTAGCTTC+TGG | 0.323109 | 1.4:-23499357 | MS.gene88597:CDS |
| ATAGTAAGATTTCAACAAAA+TGG | 0.329956 | 1.4:-23500327 | MS.gene88597:CDS |
| AATACATTTGATGCATTTAG+TGG | 0.341530 | 1.4:+23500361 | None:intergenic |
| CCTTTGATATCTATGTATTT+GGG | 0.345233 | 1.4:-23500726 | MS.gene88597:intron |
| ACTAAATGCATCAAATGTAT+TGG | 0.366321 | 1.4:-23500359 | MS.gene88597:CDS |
| AAATTCAAAATAGTGCCTTT+AGG | 0.373732 | 1.4:+23499267 | None:intergenic |
| GGTTATGTGGCCTGCATTAG+TGG | 0.381333 | 1.4:-23501138 | MS.gene88597:CDS |
| AGTAAGCGTGTGGTTTCTTC+CGG | 0.381724 | 1.4:+23498451 | None:intergenic |
| TCATTATTGGTAGCCAATAA+AGG | 0.390562 | 1.4:+23501047 | None:intergenic |
| CTAAATGCATCAAATGTATT+GGG | 0.392848 | 1.4:-23500358 | MS.gene88597:CDS |
| TCATATTTGTTTAGGTTATG+TGG | 0.397995 | 1.4:-23501151 | MS.gene88597:intron |
| AAATTACAGAATATCTCTTC+CGG | 0.427972 | 1.4:-23498470 | MS.gene88597:CDS |
| TCAATATTCAACCCTTCATC+TGG | 0.430166 | 1.4:+23500775 | None:intergenic |
| TGATACAATGAAAATCTTGT+GGG | 0.446462 | 1.4:+23500158 | None:intergenic |
| ATGTGTTGGATGTGGCATCA+TGG | 0.454248 | 1.4:-23500053 | MS.gene88597:CDS |
| GCTGATTTACACTGCTGAGC+TGG | 0.467900 | 1.4:+23500181 | None:intergenic |
| TTGTATCATTAGCAAGCAAA+TGG | 0.470095 | 1.4:-23500143 | MS.gene88597:CDS |
| TGCAGTCATGTAATATTGCT+TGG | 0.474593 | 1.4:-23498499 | MS.gene88597:intron |
| TTAGAAATGCTTTGAACAAG+AGG | 0.475137 | 1.4:-23500294 | MS.gene88597:CDS |
| CTAGCTTCTGGAGGAAAAGA+AGG | 0.476817 | 1.4:-23499345 | MS.gene88597:CDS |
| TGGCTAACAAGATACTAAAC+AGG | 0.478415 | 1.4:-23501118 | MS.gene88597:CDS |
| TTTGTTAGTACATGGAACAT+AGG | 0.487262 | 1.4:-23500808 | MS.gene88597:CDS |
| TTCTTCCCTCACAATGTCAA+AGG | 0.488930 | 1.4:-23501480 | None:intergenic |
| AATAAAGGATCTGTAGAACT+TGG | 0.492368 | 1.4:+23501062 | None:intergenic |
| TTCCCTATTAGAAAATGATC+AGG | 0.493915 | 1.4:-23498407 | MS.gene88597:intron |
| ATTGTTGCAAAGATATTGAA+AGG | 0.497320 | 1.4:-23500261 | MS.gene88597:CDS |
| TGTGTTGGATGTGGCATCAT+GGG | 0.501040 | 1.4:-23500052 | MS.gene88597:CDS |
| ATCTTGTTAGCCACTAATGC+AGG | 0.504357 | 1.4:+23501128 | None:intergenic |
| AAGATACTAAACAGGAAACT+TGG | 0.508569 | 1.4:-23501110 | MS.gene88597:CDS |
| AGATGAAGGGTTGAATATTG+AGG | 0.512538 | 1.4:-23500773 | MS.gene88597:CDS |
| GGTGGAATTGCACCAGATGA+AGG | 0.513447 | 1.4:-23500787 | MS.gene88597:CDS |
| AAGAAGGAGATGAGAAGCAT+AGG | 0.520647 | 1.4:-23499329 | MS.gene88597:CDS |
| GATGTCTAATGAAAGGACTA+AGG | 0.530564 | 1.4:+23500086 | None:intergenic |
| ATGATACAATGAAAATCTTG+TGG | 0.533362 | 1.4:+23500157 | None:intergenic |
| ATCATTAGCAAGCAAATGGT+TGG | 0.540433 | 1.4:-23500139 | MS.gene88597:CDS |
| CATCCATGTGTCTCATGTGT+TGG | 0.554145 | 1.4:-23500067 | MS.gene88597:CDS |
| TGGTATATTGATATCTGTGT+GGG | 0.555762 | 1.4:-23500119 | MS.gene88597:CDS |
| TGTGTCTCATGTGTTGGATG+TGG | 0.571735 | 1.4:-23500061 | MS.gene88597:CDS |
| CATGGGCTTCTTAGGCAACA+AGG | 0.587041 | 1.4:-23500035 | MS.gene88597:intron |
| CCCAAATACATAGATATCAA+AGG | 0.590421 | 1.4:+23500726 | None:intergenic |
| TTGTTGCAAAGATATTGAAA+GGG | 0.593223 | 1.4:-23500260 | MS.gene88597:CDS |
| GTTAGTACATGGAACATAGG+TGG | 0.598161 | 1.4:-23500805 | MS.gene88597:CDS |
| TTGGTATATTGATATCTGTG+TGG | 0.601371 | 1.4:-23500120 | MS.gene88597:CDS |
| ACACATGGATGTCTAATGAA+AGG | 0.608846 | 1.4:+23500079 | None:intergenic |
| GTGGAATTGCACCAGATGAA+GGG | 0.609719 | 1.4:-23500786 | MS.gene88597:CDS |
| CATCCAACACATGAGACACA+TGG | 0.611478 | 1.4:+23500064 | None:intergenic |
| GATTTGAAGAATATTTGTCA+AGG | 0.612327 | 1.4:-23500211 | MS.gene88597:CDS |
| TGCAGTCATCTAGCTTCTGG+AGG | 0.612853 | 1.4:-23499354 | MS.gene88597:CDS |
| GATACAATGAAAATCTTGTG+GGG | 0.675193 | 1.4:+23500159 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAATATAATATAAGCA+TGG | + | chr1.4:23500620-23500639 | None:intergenic | 10.0% |
| !! | TATATTTATCATATTTGTTT+AGG | - | chr1.4:23497825-23497844 | MS.gene88597:intron | 10.0% |
| !!! | TTTTTTTTTTATCAACAAAT+TGG | + | chr1.4:23497782-23497801 | None:intergenic | 10.0% |
| !! | AAAAATTAAATTTCTTACCA+AGG | - | chr1.4:23497797-23497816 | MS.gene88597:intron | 15.0% |
| !! | AAAATTAAATTTCTTACCAA+GGG | - | chr1.4:23497798-23497817 | MS.gene88597:intron | 15.0% |
| !! | ATACATTTGATTAATCTAAT+TGG | + | chr1.4:23499100-23499119 | None:intergenic | 15.0% |
| !! | ATCAATATATTCTTTATACT+AGG | + | chr1.4:23501126-23501145 | None:intergenic | 15.0% |
| !! | ATGTCAAAATTGTTATATTT+AGG | - | chr1.4:23499195-23499214 | MS.gene88597:intron | 15.0% |
| !! | GAAATAGAAACATTAAAAAA+TGG | - | chr1.4:23498316-23498335 | MS.gene88597:intron | 15.0% |
| !! | TGAATTTAAAAAATACTTGT+AGG | + | chr1.4:23501305-23501324 | None:intergenic | 15.0% |
| !! | TTCAATTTAAGCATTATTAT+TGG | - | chr1.4:23499964-23499983 | MS.gene88597:intron | 15.0% |
| !!! | AATTAATCTTTTTACAATCT+AGG | - | chr1.4:23498585-23498604 | MS.gene88597:intron | 15.0% |
| !!! | ACTTTTAATTTATGTAAAGA+AGG | + | chr1.4:23497576-23497595 | None:intergenic | 15.0% |
| !!! | ATGATAGTATAGTTTAATTT+TGG | + | chr1.4:23500031-23500050 | None:intergenic | 15.0% |
| !!! | CTTATTTTTTTCTTCATTTT+AGG | - | chr1.4:23501462-23501481 | MS.gene88597:intron | 15.0% |
| !! | AAAGGAACCTAATTATTAAA+AGG | + | chr1.4:23499851-23499870 | None:intergenic | 20.0% |
| !! | AAATGAAAGAAAATATGAGA+AGG | + | chr1.4:23497743-23497762 | None:intergenic | 20.0% |
| !! | AAGTAAGATGAATTAAAAGT+AGG | + | chr1.4:23498993-23499012 | None:intergenic | 20.0% |
| !! | AAGTTAATTTAAGCATAAGT+CGG | + | chr1.4:23500302-23500321 | None:intergenic | 20.0% |
| !! | AATGAAATTGAAGTTAAAGA+TGG | - | chr1.4:23501219-23501238 | MS.gene88597:intron | 20.0% |
| !! | AGATAATTGATCATCATTAT+TGG | + | chr1.4:23497953-23497972 | None:intergenic | 20.0% |
| !! | AGTAAGATGAATTAAAAGTA+GGG | + | chr1.4:23498992-23499011 | None:intergenic | 20.0% |
| !! | ATAAAATTATTGCATGATGA+TGG | + | chr1.4:23498036-23498055 | None:intergenic | 20.0% |
| !! | ATAGTAAGATTTCAACAAAA+TGG | - | chr1.4:23498657-23498676 | MS.gene88597:intron | 20.0% |
| !! | ATCTAAACCACATATATATA+TGG | + | chr1.4:23498550-23498569 | None:intergenic | 20.0% |
| !! | ATGTATGTCAAAGTAAATTT+AGG | + | chr1.4:23500401-23500420 | None:intergenic | 20.0% |
| !! | CAAACAAATTGATATTTGAT+TGG | - | chr1.4:23499296-23499315 | MS.gene88597:CDS | 20.0% |
| !! | GAAAAAATTATCACTATGTT+TGG | - | chr1.4:23498418-23498437 | MS.gene88597:CDS | 20.0% |
| !! | GAAGAAAAAAATAAGAAACT+TGG | + | chr1.4:23501457-23501476 | None:intergenic | 20.0% |
| !! | TAAATCAATGTATCTCTTTA+AGG | + | chr1.4:23500202-23500221 | None:intergenic | 20.0% |
| !! | TATAGGAAAAATTAAAGACT+TGG | - | chr1.4:23501162-23501181 | MS.gene88597:intron | 20.0% |
| !! | TGTTATTCAGTAATTAAAAG+AGG | + | chr1.4:23500260-23500279 | None:intergenic | 20.0% |
| !! | TTTAAAAAATACTTGTAGGT+TGG | + | chr1.4:23501301-23501320 | None:intergenic | 20.0% |
| !!! | AAAGTGAACATTTTTTTACT+AGG | - | chr1.4:23501095-23501114 | MS.gene88597:CDS | 20.0% |
| !!! | AGTATTGAAGAGAATAATAT+AGG | + | chr1.4:23497649-23497668 | None:intergenic | 20.0% |
| !!! | ATAGTATAGTTTAATTTTGG+CGG | + | chr1.4:23500028-23500047 | None:intergenic | 20.0% |
| !!! | ATATCAATTTGTTTGATTCA+AGG | + | chr1.4:23499291-23499310 | None:intergenic | 20.0% |
| !!! | TTAGCTTCCTTTTAATAATT+AGG | - | chr1.4:23499841-23499860 | MS.gene88597:intron | 20.0% |
| !!! | TTTTCTCGAAAATACTTAAA+TGG | + | chr1.4:23501078-23501097 | None:intergenic | 20.0% |
| !!! | TTTTTTTCGTCTCAAAATTT+TGG | - | chr1.4:23498475-23498494 | MS.gene88597:CDS | 20.0% |
| ! | AAATTACAGAATATCTCTTC+CGG | - | chr1.4:23500514-23500533 | MS.gene88597:intron | 25.0% |
| ! | AAATTCAAAATAGTGCCTTT+AGG | + | chr1.4:23499720-23499739 | None:intergenic | 25.0% |
| ! | AAATTGTTGTACTACTATAG+TGG | - | chr1.4:23500083-23500102 | MS.gene88597:CDS | 25.0% |
| ! | AAGCTAAAACCAAATTATTG+AGG | + | chr1.4:23499828-23499847 | None:intergenic | 25.0% |
| ! | AATACATTTGATGCATTTAG+TGG | + | chr1.4:23498626-23498645 | None:intergenic | 25.0% |
| ! | AATTGTTGTACTACTATAGT+GGG | - | chr1.4:23500084-23500103 | MS.gene88597:CDS | 25.0% |
| ! | ACTAAATGCATCAAATGTAT+TGG | - | chr1.4:23498625-23498644 | MS.gene88597:intron | 25.0% |
| ! | AGCATACCAAAACATTAAAA+AGG | + | chr1.4:23499350-23499369 | None:intergenic | 25.0% |
| ! | AGTAATTAAAAGAGGTCAAA+TGG | + | chr1.4:23500252-23500271 | None:intergenic | 25.0% |
| ! | ATGATAAATATACAAACCCT+TGG | + | chr1.4:23497817-23497836 | None:intergenic | 25.0% |
| ! | ATGATACAATGAAAATCTTG+TGG | + | chr1.4:23498830-23498849 | None:intergenic | 25.0% |
| ! | ATTAACTTTAGCATACATGT+TGG | - | chr1.4:23500314-23500333 | MS.gene88597:CDS | 25.0% |
| ! | ATTGTTGCAAAGATATTGAA+AGG | - | chr1.4:23498723-23498742 | MS.gene88597:intron | 25.0% |
| ! | CCTTTGATATCTATGTATTT+GGG | - | chr1.4:23498258-23498277 | MS.gene88597:intron | 25.0% |
| ! | CTAAATGCATCAAATGTATT+GGG | - | chr1.4:23498626-23498645 | MS.gene88597:intron | 25.0% |
| ! | GATTTGAAGAATATTTGTCA+AGG | - | chr1.4:23498773-23498792 | MS.gene88597:intron | 25.0% |
| ! | TCCATTCTTAGTAGATTTAT+AGG | - | chr1.4:23501145-23501164 | MS.gene88597:intron | 25.0% |
| ! | TCCTATAAATCTACTAAGAA+TGG | + | chr1.4:23501149-23501168 | None:intergenic | 25.0% |
| ! | TCCTTTGATATCTATGTATT+TGG | - | chr1.4:23498257-23498276 | MS.gene88597:intron | 25.0% |
| ! | TGAAGAGAATAATATAGGAA+TGG | + | chr1.4:23497644-23497663 | None:intergenic | 25.0% |
| ! | TGATACAATGAAAATCTTGT+GGG | + | chr1.4:23498829-23498848 | None:intergenic | 25.0% |
| ! | TGTATCACTATGATCATTAA+TGG | + | chr1.4:23497989-23498008 | None:intergenic | 25.0% |
| ! | TTAAATTCAGATGAGTACTA+TGG | - | chr1.4:23501316-23501335 | MS.gene88597:intron | 25.0% |
| ! | TTCAATAGTTGAAATTCAGT+TGG | + | chr1.4:23499425-23499444 | None:intergenic | 25.0% |
| ! | TTGTTATCATGGAATGAAAA+AGG | - | chr1.4:23501342-23501361 | MS.gene88597:intron | 25.0% |
| ! | TTGTTGCAAAGATATTGAAA+GGG | - | chr1.4:23498724-23498743 | MS.gene88597:intron | 25.0% |
| !! | ATACCTGATCATTTTCTAAT+AGG | + | chr1.4:23500583-23500602 | None:intergenic | 25.0% |
| !! | ATGTTGCTGAAATATTTTCT+AGG | - | chr1.4:23499685-23499704 | MS.gene88597:intron | 25.0% |
| !! | CAATTTTTCTACATACATGT+TGG | - | chr1.4:23500425-23500444 | MS.gene88597:intron | 25.0% |
| !! | TACCTGATCATTTTCTAATA+GGG | + | chr1.4:23500582-23500601 | None:intergenic | 25.0% |
| !! | TAGGATCCTTTTTAATGTTT+TGG | - | chr1.4:23499341-23499360 | MS.gene88597:CDS | 25.0% |
| !! | TCATATTTGTTTAGGTTATG+TGG | - | chr1.4:23497833-23497852 | MS.gene88597:intron | 25.0% |
| !!! | ACTATGATCATTAATGGATT+TGG | + | chr1.4:23497983-23498002 | None:intergenic | 25.0% |
| !!! | GATTTTTTTGACATACATGT+TGG | - | chr1.4:23500336-23500355 | MS.gene88597:CDS | 25.0% |
| !!! | TTAGCTTGTTTTACTCTATT+TGG | + | chr1.4:23500153-23500172 | None:intergenic | 25.0% |
| AAGATACTAAACAGGAAACT+TGG | - | chr1.4:23497874-23497893 | MS.gene88597:intron | 30.0% | |
| AAGGTGTACAATTTCTACAT+TGG | + | chr1.4:23497557-23497576 | None:intergenic | 30.0% | |
| AAGTTCTACAGATCCTTTAT+TGG | - | chr1.4:23497924-23497943 | MS.gene88597:intron | 30.0% | |
| AATAAAGGATCTGTAGAACT+TGG | + | chr1.4:23497925-23497944 | None:intergenic | 30.0% | |
| AATTACACATAGAAAAGTCG+AGG | - | chr1.4:23500888-23500907 | MS.gene88597:intron | 30.0% | |
| ACCAATCAACCTCAATAATT+TGG | - | chr1.4:23499816-23499835 | MS.gene88597:intron | 30.0% | |
| AGAAAATATGAGAAGGAAAG+TGG | + | chr1.4:23497736-23497755 | None:intergenic | 30.0% | |
| ATATGTTTCTTATACCATGC+TGG | + | chr1.4:23501385-23501404 | None:intergenic | 30.0% | |
| ATCTAATTGGACACTAATCA+AGG | + | chr1.4:23499087-23499106 | None:intergenic | 30.0% | |
| CCAACATGTTGAAATTTAGT+TGG | - | chr1.4:23499468-23499487 | MS.gene88597:intron | 30.0% | |
| CCAACTAAATTTCAACATGT+TGG | + | chr1.4:23499471-23499490 | None:intergenic | 30.0% | |
| CCCAAATACATAGATATCAA+AGG | + | chr1.4:23498261-23498280 | None:intergenic | 30.0% | |
| CTAGTCATGATATGAAATAG+TGG | + | chr1.4:23497693-23497712 | None:intergenic | 30.0% | |
| CTTAAATGGTCACAAGTATT+TGG | + | chr1.4:23501064-23501083 | None:intergenic | 30.0% | |
| GATACAATGAAAATCTTGTG+GGG | + | chr1.4:23498828-23498847 | None:intergenic | 30.0% | |
| GATGAATTAAAAGTAGGGTT+TGG | + | chr1.4:23498987-23499006 | None:intergenic | 30.0% | |
| TACTATGGATGTTGTTATCA+TGG | - | chr1.4:23501331-23501350 | MS.gene88597:intron | 30.0% | |
| TACTATTCTGACAAATTGCA+GGG | - | chr1.4:23499558-23499577 | MS.gene88597:intron | 30.0% | |
| TAGTTGAAATTCAGTTGGAT+AGG | + | chr1.4:23499420-23499439 | None:intergenic | 30.0% | |
| TCATGATCAAGAATCTTTCT+TGG | + | chr1.4:23499744-23499763 | None:intergenic | 30.0% | |
| TGCATGTCCATATATATATG+TGG | - | chr1.4:23498540-23498559 | MS.gene88597:intron | 30.0% | |
| TGGTATATTGATATCTGTGT+GGG | - | chr1.4:23498865-23498884 | MS.gene88597:intron | 30.0% | |
| TTAACCTTAATCCTTTGAGT+TGG | - | chr1.4:23499226-23499245 | MS.gene88597:intron | 30.0% | |
| TTACTATTCTGACAAATTGC+AGG | - | chr1.4:23499557-23499576 | MS.gene88597:intron | 30.0% | |
| TTCCCTATTAGAAAATGATC+AGG | - | chr1.4:23500577-23500596 | MS.gene88597:intron | 30.0% | |
| TTGACATACATGTTGGATTA+TGG | - | chr1.4:23500343-23500362 | MS.gene88597:CDS | 30.0% | |
| TTGGTATATTGATATCTGTG+TGG | - | chr1.4:23498864-23498883 | MS.gene88597:intron | 30.0% | |
| TTGTATCATTAGCAAGCAAA+TGG | - | chr1.4:23498841-23498860 | MS.gene88597:intron | 30.0% | |
| TTTGTTAGTACATGGAACAT+AGG | - | chr1.4:23498176-23498195 | MS.gene88597:intron | 30.0% | |
| ! | AAAGTAGGGTTTGGTTAATT+AGG | + | chr1.4:23498978-23498997 | None:intergenic | 30.0% |
| ! | AATTATTGAGGTTGATTGGT+TGG | + | chr1.4:23499816-23499835 | None:intergenic | 30.0% |
| ! | ACCAAATTATTGAGGTTGAT+TGG | + | chr1.4:23499820-23499839 | None:intergenic | 30.0% |
| ! | ACTTGTTGAAAAAAGAGACT+GGG | - | chr1.4:23500553-23500572 | MS.gene88597:intron | 30.0% |
| ! | TACTTGTTGAAAAAAGAGAC+TGG | - | chr1.4:23500552-23500571 | MS.gene88597:intron | 30.0% |
| ! | TCATTATTGGTAGCCAATAA+AGG | + | chr1.4:23497940-23497959 | None:intergenic | 30.0% |
| ! | TTAGAAATGCTTTGAACAAG+AGG | - | chr1.4:23498690-23498709 | MS.gene88597:intron | 30.0% |
| !! | AAATGCTAACAACTAGCTTT+AGG | + | chr1.4:23500795-23500814 | None:intergenic | 30.0% |
| !! | AATGCTAACAACTAGCTTTA+GGG | + | chr1.4:23500794-23500813 | None:intergenic | 30.0% |
| !! | ATGCTCGAATTGTTATTTCT+GGG | - | chr1.4:23499365-23499384 | MS.gene88597:CDS | 30.0% |
| !! | TATGCTCGAATTGTTATTTC+TGG | - | chr1.4:23499364-23499383 | MS.gene88597:CDS | 30.0% |
| !!! | ACTTTGTTTTCATGATTTGG+TGG | + | chr1.4:23499875-23499894 | None:intergenic | 30.0% |
| !!! | AGCACTTTGTTTTCATGATT+TGG | + | chr1.4:23499878-23499897 | None:intergenic | 30.0% |
| !!! | CTGGGAATATTTTTTTAACC+TGG | - | chr1.4:23499383-23499402 | MS.gene88597:CDS | 30.0% |
| !!! | CTTTGTTTTCATGATTTGGT+GGG | + | chr1.4:23499874-23499893 | None:intergenic | 30.0% |
| AAAGTCGAGGAAATCTTACA+AGG | - | chr1.4:23500901-23500920 | MS.gene88597:intron | 35.0% | |
| AAGATATCATGTTGAGGTAG+AGG | + | chr1.4:23497617-23497636 | None:intergenic | 35.0% | |
| AATTTGTCCTGCTAGATTGA+AGG | - | chr1.4:23500002-23500021 | MS.gene88597:intron | 35.0% | |
| ACACATGGATGTCTAATGAA+AGG | + | chr1.4:23498908-23498927 | None:intergenic | 35.0% | |
| AGATGAAGGGTTGAATATTG+AGG | - | chr1.4:23498211-23498230 | MS.gene88597:intron | 35.0% | |
| ATCATTAGCAAGCAAATGGT+TGG | - | chr1.4:23498845-23498864 | MS.gene88597:intron | 35.0% | |
| ATTGACAGTGATGAGATTAG+TGG | + | chr1.4:23499056-23499075 | None:intergenic | 35.0% | |
| CATATGCAGAAAAGTTGTAG+TGG | - | chr1.4:23498089-23498108 | MS.gene88597:intron | 35.0% | |
| GATGTCTAATGAAAGGACTA+AGG | + | chr1.4:23498901-23498920 | None:intergenic | 35.0% | |
| GGATTGAAGATATCATGTTG+AGG | + | chr1.4:23497623-23497642 | None:intergenic | 35.0% | |
| TAATTTCAGCACTCACTTCA+TGG | - | chr1.4:23498281-23498300 | MS.gene88597:intron | 35.0% | |
| TCAATATTCAACCCTTCATC+TGG | + | chr1.4:23498212-23498231 | None:intergenic | 35.0% | |
| TGCAGTCATGTAATATTGCT+TGG | - | chr1.4:23500485-23500504 | MS.gene88597:intron | 35.0% | |
| TGGCTAACAAGATACTAAAC+AGG | - | chr1.4:23497866-23497885 | MS.gene88597:intron | 35.0% | |
| TTAGATTATTCCAACGACTG+AGG | - | chr1.4:23499144-23499163 | MS.gene88597:intron | 35.0% | |
| ! | GAAGGGTTTTTGTTAGTACA+TGG | - | chr1.4:23498168-23498187 | MS.gene88597:intron | 35.0% |
| !! | GAAAAGTTGTAGTGGTTTTG+TGG | - | chr1.4:23498097-23498116 | MS.gene88597:intron | 35.0% |
| !! | TCTAGGACAACTTTTCCTAA+AGG | - | chr1.4:23499702-23499721 | MS.gene88597:intron | 35.0% |
| !! | TTTTTCAACAAGTAAGCGTG+TGG | + | chr1.4:23500546-23500565 | None:intergenic | 35.0% |
| !!! | TTTTCATGATTTGGTGGGAA+AGG | + | chr1.4:23499869-23499888 | None:intergenic | 35.0% |
| ATCTTGTTAGCCACTAATGC+AGG | + | chr1.4:23497859-23497878 | None:intergenic | 40.0% | |
| ATGTTAAGAGGTTGGCATGA+AGG | - | chr1.4:23501259-23501278 | MS.gene88597:intron | 40.0% | |
| CCTTCCAACTCAAAGGATTA+AGG | + | chr1.4:23499233-23499252 | None:intergenic | 40.0% | |
| GAGAGTGGACAAATGTTAAG+AGG | - | chr1.4:23501247-23501266 | MS.gene88597:intron | 40.0% | |
| GTGGACAAATGTTAAGAGGT+TGG | - | chr1.4:23501251-23501270 | MS.gene88597:intron | 40.0% | |
| GTGTGTGTGTAAACACATAG+AGG | - | chr1.4:23500827-23500846 | MS.gene88597:intron | 40.0% | |
| GTTAGTACATGGAACATAGG+TGG | - | chr1.4:23498179-23498198 | MS.gene88597:intron | 40.0% | |
| TAGCAGGACAAATTCAAAGC+TGG | + | chr1.4:23499996-23500015 | None:intergenic | 40.0% | |
| TATTGTGCAATCGAGCACAT+AGG | - | chr1.4:23499322-23499341 | MS.gene88597:CDS | 40.0% | |
| TCACTATGTTTGGCAACTCT+AGG | - | chr1.4:23498428-23498447 | MS.gene88597:CDS | 40.0% | |
| TTAAAGATGGAGCTAGAGAG+TGG | - | chr1.4:23501232-23501251 | MS.gene88597:intron | 40.0% | |
| TTCAGTTGGATAGGTTTCAG+AGG | + | chr1.4:23499411-23499430 | None:intergenic | 40.0% | |
| ! | AAGAAGGAGATGAGAAGCAT+AGG | - | chr1.4:23499655-23499674 | MS.gene88597:intron | 40.0% |
| ! | ATTGAGGTTGATTGGTTGGA+CGG | + | chr1.4:23499812-23499831 | None:intergenic | 40.0% |
| ! | TATGTTTGGCAACTCTAGGA+CGG | - | chr1.4:23498432-23498451 | MS.gene88597:CDS | 40.0% |
| !! | CACTTCATGGTTTTCTAGCA+TGG | - | chr1.4:23498294-23498313 | MS.gene88597:intron | 40.0% |
| !! | CCTTAATCCTTTGAGTTGGA+AGG | - | chr1.4:23499230-23499249 | MS.gene88597:intron | 40.0% |
| AAGGTCCAACCGAATCTCAA+CGG | - | chr1.4:23499249-23499268 | MS.gene88597:CDS | 45.0% | |
| AGTAAGCGTGTGGTTTCTTC+CGG | + | chr1.4:23500536-23500555 | None:intergenic | 45.0% | |
| ATGTGTTGGATGTGGCATCA+TGG | - | chr1.4:23498931-23498950 | MS.gene88597:intron | 45.0% | |
| CAAAGAAGAGATCACCAGCA+TGG | - | chr1.4:23501368-23501387 | MS.gene88597:intron | 45.0% | |
| CAACATGTTGGATTCGAGCT+AGG | + | chr1.4:23499459-23499478 | None:intergenic | 45.0% | |
| CATCCAACACATGAGACACA+TGG | + | chr1.4:23498923-23498942 | None:intergenic | 45.0% | |
| CATCCATGTGTCTCATGTGT+TGG | - | chr1.4:23498917-23498936 | MS.gene88597:intron | 45.0% | |
| GTGGAATTGCACCAGATGAA+GGG | - | chr1.4:23498198-23498217 | MS.gene88597:intron | 45.0% | |
| TCGATCCTACCGTTGAGATT+CGG | + | chr1.4:23499261-23499280 | None:intergenic | 45.0% | |
| TGAGGTAGAGGAACTTGAGA+AGG | + | chr1.4:23497605-23497624 | None:intergenic | 45.0% | |
| TGTGTCTCATGTGTTGGATG+TGG | - | chr1.4:23498923-23498942 | MS.gene88597:intron | 45.0% | |
| TGTGTTGGATGTGGCATCAT+GGG | - | chr1.4:23498932-23498951 | MS.gene88597:intron | 45.0% | |
| ! | CTAGCTTCTGGAGGAAAAGA+AGG | - | chr1.4:23499639-23499658 | MS.gene88597:intron | 45.0% |
| !! | CTCTAGGACGGAATTAGAGA+TGG | - | chr1.4:23498444-23498463 | MS.gene88597:CDS | 45.0% |
| !!! | TTATTTTTTTATTTATTGAA+GGG | - | chr1.4:23498151-23498170 | MS.gene88597:intron | 5.0% |
| !!! | TTTATTTTTTTATTTATTGA+AGG | - | chr1.4:23498150-23498169 | MS.gene88597:intron | 5.0% |
| CATGGGCTTCTTAGGCAACA+AGG | - | chr1.4:23498949-23498968 | MS.gene88597:intron | 50.0% | |
| GGATAGGTTTCAGAGGATCC+AGG | + | chr1.4:23499404-23499423 | None:intergenic | 50.0% | |
| GGTGGAATTGCACCAGATGA+AGG | - | chr1.4:23498197-23498216 | MS.gene88597:intron | 50.0% | |
| GGTTATGTGGCCTGCATTAG+TGG | - | chr1.4:23497846-23497865 | MS.gene88597:intron | 50.0% | |
| GGTTGGACCTTCCAACTCAA+AGG | + | chr1.4:23499240-23499259 | None:intergenic | 50.0% | |
| TAGTTGGATCGACTGCACAG+AGG | - | chr1.4:23499484-23499503 | MS.gene88597:intron | 50.0% | |
| TCCAACCGAATCTCAACGGT+AGG | - | chr1.4:23499253-23499272 | MS.gene88597:CDS | 50.0% | |
| TCCAACGACTGAGGTGAAGT+AGG | - | chr1.4:23499153-23499172 | MS.gene88597:intron | 50.0% | |
| TCCTACTTCACCTCAGTCGT+TGG | + | chr1.4:23499157-23499176 | None:intergenic | 50.0% | |
| TGTGGCATCATGGGCTTCTT+AGG | - | chr1.4:23498941-23498960 | MS.gene88597:intron | 50.0% | |
| ! | GCTGATTTACACTGCTGAGC+TGG | + | chr1.4:23498806-23498825 | None:intergenic | 50.0% |
| ! | GTGTGCAGTCATCTAGCTTC+TGG | - | chr1.4:23499627-23499646 | MS.gene88597:intron | 50.0% |
| ! | TCCTACCGTTGAGATTCGGT+TGG | + | chr1.4:23499257-23499276 | None:intergenic | 50.0% |
| ! | TGCAGTCATCTAGCTTCTGG+AGG | - | chr1.4:23499630-23499649 | MS.gene88597:intron | 50.0% |
| TGGATCGACTGCACAGAGGA+GGG | - | chr1.4:23499488-23499507 | MS.gene88597:intron | 55.0% | |
| TTGGATCGACTGCACAGAGG+AGG | - | chr1.4:23499487-23499506 | MS.gene88597:intron | 55.0% | |
| TTGGCGGCCTTCAATCTAGC+AGG | + | chr1.4:23500012-23500031 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 23497517 | 23501489 | 23497517 | ID=MS.gene88597 |
| chr1.4 | mRNA | 23497517 | 23501489 | 23497517 | ID=MS.gene88597.t1;Parent=MS.gene88597 |
| chr1.4 | exon | 23501481 | 23501489 | 23501481 | ID=MS.gene88597.t1.exon1;Parent=MS.gene88597.t1 |
| chr1.4 | CDS | 23501481 | 23501489 | 23501481 | ID=cds.MS.gene88597.t1;Parent=MS.gene88597.t1 |
| chr1.4 | exon | 23500987 | 23501159 | 23500987 | ID=MS.gene88597.t1.exon2;Parent=MS.gene88597.t1 |
| chr1.4 | CDS | 23500987 | 23501159 | 23500987 | ID=cds.MS.gene88597.t1;Parent=MS.gene88597.t1 |
| chr1.4 | exon | 23500727 | 23500834 | 23500727 | ID=MS.gene88597.t1.exon3;Parent=MS.gene88597.t1 |
| chr1.4 | CDS | 23500727 | 23500834 | 23500727 | ID=cds.MS.gene88597.t1;Parent=MS.gene88597.t1 |
| chr1.4 | exon | 23500036 | 23500399 | 23500036 | ID=MS.gene88597.t1.exon4;Parent=MS.gene88597.t1 |
| chr1.4 | CDS | 23500036 | 23500399 | 23500036 | ID=cds.MS.gene88597.t1;Parent=MS.gene88597.t1 |
| chr1.4 | exon | 23499243 | 23499427 | 23499243 | ID=MS.gene88597.t1.exon5;Parent=MS.gene88597.t1 |
| chr1.4 | CDS | 23499243 | 23499427 | 23499243 | ID=cds.MS.gene88597.t1;Parent=MS.gene88597.t1 |
| chr1.4 | exon | 23498408 | 23498516 | 23498408 | ID=MS.gene88597.t1.exon6;Parent=MS.gene88597.t1 |
| chr1.4 | CDS | 23498408 | 23498516 | 23498408 | ID=cds.MS.gene88597.t1;Parent=MS.gene88597.t1 |
| chr1.4 | exon | 23497517 | 23497522 | 23497517 | ID=MS.gene88597.t1.exon7;Parent=MS.gene88597.t1 |
| chr1.4 | CDS | 23497517 | 23497522 | 23497517 | ID=cds.MS.gene88597.t1;Parent=MS.gene88597.t1 |
| Gene Sequence |
| Protein sequence |
