Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88781.t1 | XP_003615624.1 | 88.7 | 150 | 17 | 0 | 2 | 151 | 14 | 163 | 4.50E-68 | 267.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88781.t1 | Q56Y11 | 67.7 | 99 | 32 | 0 | 53 | 151 | 64 | 162 | 4.8e-34 | 145.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88781.t1 | G7K6E4 | 88.7 | 150 | 17 | 0 | 2 | 151 | 14 | 163 | 3.3e-68 | 267.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049396 | MS.gene88781 | 0.813473 | 2.51E-51 | -1.69E-46 |
| MS.gene049757 | MS.gene88781 | 0.832941 | 7.09E-56 | -1.69E-46 |
| MS.gene050170 | MS.gene88781 | 0.869472 | 3.02E-66 | -1.69E-46 |
| MS.gene050323 | MS.gene88781 | 0.835282 | 1.84E-56 | -1.69E-46 |
| MS.gene050496 | MS.gene88781 | 0.836734 | 7.87E-57 | -1.69E-46 |
| MS.gene050502 | MS.gene88781 | 0.854391 | 1.27E-61 | -1.69E-46 |
| MS.gene050553 | MS.gene88781 | 0.843927 | 1.04E-58 | -1.69E-46 |
| MS.gene050697 | MS.gene88781 | 0.875592 | 2.73E-68 | -1.69E-46 |
| MS.gene050868 | MS.gene88781 | 0.826774 | 2.26E-54 | -1.69E-46 |
| MS.gene050871 | MS.gene88781 | 0.829209 | 5.85E-55 | -1.69E-46 |
| MS.gene051838 | MS.gene88781 | 0.827756 | 1.31E-54 | -1.69E-46 |
| MS.gene051874 | MS.gene88781 | 0.801067 | 1.07E-48 | -1.69E-46 |
| MS.gene051941 | MS.gene88781 | 0.850224 | 1.95E-60 | -1.69E-46 |
| MS.gene052066 | MS.gene88781 | 0.809545 | 1.79E-50 | -1.69E-46 |
| MS.gene052100 | MS.gene88781 | 0.812333 | 4.47E-51 | -1.69E-46 |
| MS.gene052346 | MS.gene88781 | 0.835762 | 1.39E-56 | -1.69E-46 |
| MS.gene052414 | MS.gene88781 | 0.821902 | 3.15E-53 | -1.69E-46 |
| MS.gene053479 | MS.gene88781 | 0.821813 | 3.31E-53 | -1.69E-46 |
| MS.gene053824 | MS.gene88781 | 0.827161 | 1.82E-54 | -1.69E-46 |
| MS.gene053889 | MS.gene88781 | 0.810688 | 1.02E-50 | -1.69E-46 |
| MS.gene054344 | MS.gene88781 | 0.801346 | 9.40E-49 | -1.69E-46 |
| MS.gene054884 | MS.gene88781 | -0.803083 | 4.13E-49 | -1.69E-46 |
| MS.gene05494 | MS.gene88781 | 0.831834 | 1.33E-55 | -1.69E-46 |
| MS.gene055158 | MS.gene88781 | -0.802059 | 6.71E-49 | -1.69E-46 |
| MS.gene055539 | MS.gene88781 | 0.804412 | 2.19E-49 | -1.69E-46 |
| MS.gene055741 | MS.gene88781 | 0.858969 | 5.72E-63 | -1.69E-46 |
| MS.gene055744 | MS.gene88781 | 0.854149 | 1.49E-61 | -1.69E-46 |
| MS.gene05589 | MS.gene88781 | 0.841414 | 4.82E-58 | -1.69E-46 |
| MS.gene055909 | MS.gene88781 | 0.801629 | 8.23E-49 | -1.69E-46 |
| MS.gene055911 | MS.gene88781 | 0.80007 | 1.71E-48 | -1.69E-46 |
| MS.gene056166 | MS.gene88781 | 0.816611 | 5.06E-52 | -1.69E-46 |
| MS.gene056387 | MS.gene88781 | 0.855728 | 5.19E-62 | -1.69E-46 |
| MS.gene056504 | MS.gene88781 | 0.819291 | 1.25E-52 | -1.69E-46 |
| MS.gene056508 | MS.gene88781 | 0.800218 | 1.60E-48 | -1.69E-46 |
| MS.gene056877 | MS.gene88781 | 0.801223 | 9.96E-49 | -1.69E-46 |
| MS.gene057019 | MS.gene88781 | 0.852872 | 3.47E-61 | -1.69E-46 |
| MS.gene057086 | MS.gene88781 | 0.846158 | 2.59E-59 | -1.69E-46 |
| MS.gene05837 | MS.gene88781 | 0.805541 | 1.27E-49 | -1.69E-46 |
| MS.gene059667 | MS.gene88781 | 0.807191 | 5.70E-50 | -1.69E-46 |
| MS.gene059717 | MS.gene88781 | 0.803241 | 3.83E-49 | -1.69E-46 |
| MS.gene06000 | MS.gene88781 | 0.857372 | 1.71E-62 | -1.69E-46 |
| MS.gene06027 | MS.gene88781 | 0.803114 | 4.07E-49 | -1.69E-46 |
| MS.gene060372 | MS.gene88781 | 0.850575 | 1.55E-60 | -1.69E-46 |
| MS.gene060593 | MS.gene88781 | -0.813776 | 2.16E-51 | -1.69E-46 |
| MS.gene060778 | MS.gene88781 | 0.836452 | 9.28E-57 | -1.69E-46 |
| MS.gene06097 | MS.gene88781 | 0.822646 | 2.12E-53 | -1.69E-46 |
| MS.gene060982 | MS.gene88781 | 0.830669 | 2.58E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88781.t1 | MTR_5g070210 | 88.667 | 150 | 17 | 0 | 2 | 151 | 14 | 163 | 6.35e-97 | 282 |
| MS.gene88781.t1 | MTR_5g070230 | 62.602 | 123 | 46 | 0 | 31 | 153 | 10 | 132 | 6.62e-53 | 166 |
| MS.gene88781.t1 | MTR_5g070250 | 59.677 | 62 | 24 | 1 | 94 | 154 | 20 | 81 | 6.12e-20 | 83.2 |
| MS.gene88781.t1 | MTR_8g073540 | 46.341 | 82 | 44 | 0 | 61 | 142 | 28 | 109 | 6.07e-18 | 79.3 |
| MS.gene88781.t1 | MTR_1g095500 | 45.122 | 82 | 45 | 0 | 61 | 142 | 28 | 109 | 9.14e-18 | 79.0 |
| MS.gene88781.t1 | MTR_5g070270 | 50.000 | 98 | 34 | 6 | 10 | 96 | 23 | 116 | 1.33e-17 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88781.t1 | AT5G58770 | 65.217 | 92 | 32 | 0 | 63 | 154 | 74 | 165 | 6.97e-41 | 139 |
| MS.gene88781.t1 | AT5G58782 | 53.000 | 100 | 47 | 0 | 55 | 154 | 46 | 145 | 2.66e-30 | 111 |
| MS.gene88781.t1 | AT5G58782 | 53.000 | 100 | 47 | 0 | 55 | 154 | 64 | 163 | 3.20e-30 | 111 |
| MS.gene88781.t1 | AT5G58780 | 55.914 | 93 | 41 | 0 | 59 | 151 | 63 | 155 | 5.12e-29 | 108 |
| MS.gene88781.t1 | AT2G23400 | 41.085 | 129 | 75 | 1 | 26 | 154 | 31 | 158 | 1.14e-28 | 105 |
| MS.gene88781.t1 | AT2G23400 | 41.085 | 129 | 75 | 1 | 26 | 154 | 31 | 158 | 1.61e-27 | 104 |
| MS.gene88781.t1 | AT2G23410 | 49.474 | 95 | 47 | 1 | 61 | 154 | 65 | 159 | 8.29e-25 | 97.4 |
| MS.gene88781.t1 | AT5G58784 | 48.889 | 90 | 46 | 0 | 65 | 154 | 69 | 158 | 1.50e-24 | 96.7 |
| MS.gene88781.t1 | AT2G17570 | 47.561 | 82 | 43 | 0 | 66 | 147 | 39 | 120 | 7.75e-19 | 81.3 |
Find 46 sgRNAs with CRISPR-Local
Find 66 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCATTCTCAACCGATAAT+TGG | 0.274745 | 5.4:-55086774 | MS.gene88781:CDS |
| TAAGCATGTGGCGGTGATTA+TGG | 0.306230 | 5.4:-55086923 | MS.gene88781:CDS |
| GTGTTATAGTTGGGGAATAA+AGG | 0.324367 | 5.4:-55086809 | MS.gene88781:CDS |
| CTCATTCTCGATATTCTTCA+AGG | 0.331892 | 5.4:-55087071 | MS.gene88781:CDS |
| ATGGGAGGTGGGCAAAGATG+AGG | 0.382978 | 5.4:-55086894 | MS.gene88781:CDS |
| GGTGAGGTTGTGTTATAGTT+GGG | 0.400487 | 5.4:-55086818 | MS.gene88781:CDS |
| TACCACTAACCACCCTCATC+GGG | 0.419799 | 5.4:-55087112 | MS.gene88781:CDS |
| CTTAGGTCGAATCCAATTAT+CGG | 0.425110 | 5.4:+55086762 | None:intergenic |
| TGGTGAGGTTGTGTTATAGT+TGG | 0.451686 | 5.4:-55086819 | MS.gene88781:CDS |
| CGGTGATTATGGACGGGAAT+GGG | 0.455731 | 5.4:-55086912 | MS.gene88781:CDS |
| TGGGAGGTGGGCAAAGATGA+GGG | 0.455809 | 5.4:-55086893 | MS.gene88781:CDS |
| GGGAGGTGGGCAAAGATGAG+GGG | 0.456021 | 5.4:-55086892 | MS.gene88781:CDS |
| GGAGGTGGGCAAAGATGAGG+GGG | 0.479875 | 5.4:-55086891 | MS.gene88781:CDS |
| CGATAATTGGATTCGACCTA+AGG | 0.480618 | 5.4:-55086761 | MS.gene88781:intron |
| CCGTCTGCGGGTCATGTAGC+CGG | 0.489572 | 5.4:-55086862 | MS.gene88781:CDS |
| TTATGGACGGGAATGGGAGG+TGG | 0.493196 | 5.4:-55086906 | MS.gene88781:CDS |
| CACGGCAATAGTGACGCGTT+TGG | 0.496192 | 5.4:+55087041 | None:intergenic |
| AGCTCCGCTTGCAATTCCTC+TGG | 0.511293 | 5.4:+55086952 | None:intergenic |
| GCGGTGATTATGGACGGGAA+TGG | 0.517607 | 5.4:-55086913 | MS.gene88781:CDS |
| CTACCACTAACCACCCTCAT+CGG | 0.530891 | 5.4:-55087113 | MS.gene88781:CDS |
| CGGCTACATGACCCGCAGAC+GGG | 0.532986 | 5.4:+55086863 | None:intergenic |
| AATTTATTGTTCTTTCAAAG+AGG | 0.535873 | 5.4:+55086605 | None:intergenic |
| GCTTGCAATTCCTCTGGCAA+TGG | 0.544403 | 5.4:+55086958 | None:intergenic |
| GTGAGGTTGTGTTATAGTTG+GGG | 0.555675 | 5.4:-55086817 | MS.gene88781:CDS |
| ATAATCACCGCCACATGCTT+AGG | 0.560502 | 5.4:+55086925 | None:intergenic |
| TATGGACGGGAATGGGAGGT+GGG | 0.565954 | 5.4:-55086905 | MS.gene88781:CDS |
| ATGTGGCGGTGATTATGGAC+GGG | 0.576395 | 5.4:-55086918 | MS.gene88781:CDS |
| TGTAAAGTCGTTGAGAAGGA+TGG | 0.579930 | 5.4:-55086839 | MS.gene88781:CDS |
| GGCTACATGACCCGCAGACG+GGG | 0.586275 | 5.4:+55086864 | None:intergenic |
| CATGTGGCGGTGATTATGGA+CGG | 0.587809 | 5.4:-55086919 | MS.gene88781:CDS |
| CTGAAATTGAAGCACTAGAG+AGG | 0.594486 | 5.4:-55086582 | MS.gene88781:CDS |
| CAAACGCGTCACTATTGCCG+TGG | 0.602876 | 5.4:-55087040 | MS.gene88781:CDS |
| TGATTATGGACGGGAATGGG+AGG | 0.615382 | 5.4:-55086909 | MS.gene88781:CDS |
| CACCTGATCCTGAAAAGCCA+CGG | 0.615415 | 5.4:+55087023 | None:intergenic |
| CCGGCTACATGACCCGCAGA+CGG | 0.616650 | 5.4:+55086862 | None:intergenic |
| CCGGTGTAAAGTCGTTGAGA+AGG | 0.624155 | 5.4:-55086843 | MS.gene88781:CDS |
| AGTCGTTGAGAAGGATGGTG+AGG | 0.625194 | 5.4:-55086834 | MS.gene88781:CDS |
| GGAGCTGATGCCTAAGCATG+TGG | 0.626089 | 5.4:-55086935 | MS.gene88781:CDS |
| AGAAATGGAGCCATTGCCAG+AGG | 0.635367 | 5.4:-55086968 | MS.gene88781:CDS |
| GGTGGATGGGGAAACTTCCG+TGG | 0.636917 | 5.4:-55087004 | MS.gene88781:CDS |
| CCTTCTCAACGACTTTACAC+CGG | 0.638232 | 5.4:+55086843 | None:intergenic |
| CCACTAACCACCCTCATCGG+GGG | 0.665764 | 5.4:-55087110 | MS.gene88781:CDS |
| ATTGCCAGAGGAATTGCAAG+CGG | 0.666528 | 5.4:-55086956 | MS.gene88781:CDS |
| GCTACATGACCCGCAGACGG+GGG | 0.669075 | 5.4:+55086865 | None:intergenic |
| ACCACTAACCACCCTCATCG+GGG | 0.670600 | 5.4:-55087111 | MS.gene88781:CDS |
| GCTGATGCCTAAGCATGTGG+CGG | 0.712093 | 5.4:-55086932 | MS.gene88781:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTCTTAGTTTTGATTAT+TGG | - | chr5.4:55087005-55087024 | MS.gene88781:CDS | 15.0% |
| !! | AATTTATTGTTCTTTCAAAG+AGG | + | chr5.4:55087073-55087092 | None:intergenic | 20.0% |
| ! | AGTGAAATTAAAATGACCTT+AGG | + | chr5.4:55086933-55086952 | None:intergenic | 25.0% |
| ! | ATCACATTAGTTATTGATAG+TGG | - | chr5.4:55086982-55087001 | MS.gene88781:CDS | 25.0% |
| !!! | GTTTTGATTATTGGTGTTAC+TGG | - | chr5.4:55087014-55087033 | MS.gene88781:CDS | 30.0% |
| CTCATTCTCGATATTCTTCA+AGG | - | chr5.4:55086604-55086623 | MS.gene88781:CDS | 35.0% | |
| CTTAGGTCGAATCCAATTAT+CGG | + | chr5.4:55086916-55086935 | None:intergenic | 35.0% | |
| GTGTTATAGTTGGGGAATAA+AGG | - | chr5.4:55086866-55086885 | MS.gene88781:CDS | 35.0% | |
| TTGCATTCTCAACCGATAAT+TGG | - | chr5.4:55086901-55086920 | MS.gene88781:CDS | 35.0% | |
| ! | TTCTGAAAAATCTTCGTCCA+CGG | + | chr5.4:55086691-55086710 | None:intergenic | 35.0% |
| !! | GGACGAAGATTTTTCAGAAA+TGG | - | chr5.4:55086692-55086711 | MS.gene88781:intron | 35.0% |
| CGATAATTGGATTCGACCTA+AGG | - | chr5.4:55086914-55086933 | MS.gene88781:CDS | 40.0% | |
| GGTGAGGTTGTGTTATAGTT+GGG | - | chr5.4:55086857-55086876 | MS.gene88781:CDS | 40.0% | |
| GTGAGGTTGTGTTATAGTTG+GGG | - | chr5.4:55086858-55086877 | MS.gene88781:CDS | 40.0% | |
| TGGTGAGGTTGTGTTATAGT+TGG | - | chr5.4:55086856-55086875 | MS.gene88781:CDS | 40.0% | |
| TGTAAAGTCGTTGAGAAGGA+TGG | - | chr5.4:55086836-55086855 | MS.gene88781:CDS | 40.0% | |
| ! | CTGAAATTGAAGCACTAGAG+AGG | - | chr5.4:55087093-55087112 | MS.gene88781:CDS | 40.0% |
| ATAATCACCGCCACATGCTT+AGG | + | chr5.4:55086753-55086772 | None:intergenic | 45.0% | |
| ATTGCCAGAGGAATTGCAAG+CGG | - | chr5.4:55086719-55086738 | MS.gene88781:intron | 45.0% | |
| CCTTCTCAACGACTTTACAC+CGG | + | chr5.4:55086835-55086854 | None:intergenic | 45.0% | |
| TAAGCATGTGGCGGTGATTA+TGG | - | chr5.4:55086752-55086771 | MS.gene88781:intron | 45.0% | |
| TGTTACTGGTGATATGCAGG+TGG | - | chr5.4:55087028-55087047 | MS.gene88781:CDS | 45.0% | |
| !! | CTTTTCAGGATCAGGTGGAT+GGG | - | chr5.4:55086658-55086677 | MS.gene88781:intron | 45.0% |
| !! | TGGTGTTACTGGTGATATGC+AGG | - | chr5.4:55087025-55087044 | MS.gene88781:CDS | 45.0% |
| !! | TTTTCAGGATCAGGTGGATG+GGG | - | chr5.4:55086659-55086678 | MS.gene88781:intron | 45.0% |
| AGAAATGGAGCCATTGCCAG+AGG | - | chr5.4:55086707-55086726 | MS.gene88781:intron | 50.0% | |
| AGTCGTTGAGAAGGATGGTG+AGG | - | chr5.4:55086841-55086860 | MS.gene88781:CDS | 50.0% | |
| ATGTGGCGGTGATTATGGAC+GGG | - | chr5.4:55086757-55086776 | MS.gene88781:intron | 50.0% | |
| CACCTGATCCTGAAAAGCCA+CGG | + | chr5.4:55086655-55086674 | None:intergenic | 50.0% | |
| CATGTGGCGGTGATTATGGA+CGG | - | chr5.4:55086756-55086775 | MS.gene88781:intron | 50.0% | |
| CCGGTGTAAAGTCGTTGAGA+AGG | - | chr5.4:55086832-55086851 | MS.gene88781:CDS | 50.0% | |
| CGGTGATTATGGACGGGAAT+GGG | - | chr5.4:55086763-55086782 | MS.gene88781:CDS | 50.0% | |
| CTACCACTAACCACCCTCAT+CGG | - | chr5.4:55086562-55086581 | MS.gene88781:CDS | 50.0% | |
| GCTTGCAATTCCTCTGGCAA+TGG | + | chr5.4:55086720-55086739 | None:intergenic | 50.0% | |
| TACCACTAACCACCCTCATC+GGG | - | chr5.4:55086563-55086582 | MS.gene88781:CDS | 50.0% | |
| TGATTATGGACGGGAATGGG+AGG | - | chr5.4:55086766-55086785 | MS.gene88781:CDS | 50.0% | |
| ! | CACTATTGCCGTGGCTTTTC+AGG | - | chr5.4:55086644-55086663 | MS.gene88781:intron | 50.0% |
| !! | GCTTTTCAGGATCAGGTGGA+TGG | - | chr5.4:55086657-55086676 | MS.gene88781:intron | 50.0% |
| ACCACTAACCACCCTCATCG+GGG | - | chr5.4:55086564-55086583 | MS.gene88781:CDS | 55.0% | |
| AGCTCCGCTTGCAATTCCTC+TGG | + | chr5.4:55086726-55086745 | None:intergenic | 55.0% | |
| ATCTGACTGATCCCCCGATG+AGG | + | chr5.4:55086579-55086598 | None:intergenic | 55.0% | |
| ATGGGAGGTGGGCAAAGATG+AGG | - | chr5.4:55086781-55086800 | MS.gene88781:CDS | 55.0% | |
| CAAACGCGTCACTATTGCCG+TGG | - | chr5.4:55086635-55086654 | MS.gene88781:intron | 55.0% | |
| CACGGCAATAGTGACGCGTT+TGG | + | chr5.4:55086637-55086656 | None:intergenic | 55.0% | |
| GCGGTGATTATGGACGGGAA+TGG | - | chr5.4:55086762-55086781 | MS.gene88781:CDS | 55.0% | |
| GCTGATGCCTAAGCATGTGG+CGG | - | chr5.4:55086743-55086762 | MS.gene88781:intron | 55.0% | |
| GGAGCTGATGCCTAAGCATG+TGG | - | chr5.4:55086740-55086759 | MS.gene88781:intron | 55.0% | |
| TATGGACGGGAATGGGAGGT+GGG | - | chr5.4:55086770-55086789 | MS.gene88781:CDS | 55.0% | |
| TCTGACTGATCCCCCGATGA+GGG | + | chr5.4:55086578-55086597 | None:intergenic | 55.0% | |
| TGGGAGGTGGGCAAAGATGA+GGG | - | chr5.4:55086782-55086801 | MS.gene88781:CDS | 55.0% | |
| TTATGGACGGGAATGGGAGG+TGG | - | chr5.4:55086769-55086788 | MS.gene88781:CDS | 55.0% | |
| !! | CGTGGCTTTTCAGGATCAGG+TGG | - | chr5.4:55086653-55086672 | MS.gene88781:intron | 55.0% |
| !! | TGCCGTGGCTTTTCAGGATC+AGG | - | chr5.4:55086650-55086669 | MS.gene88781:intron | 55.0% |
| CCACTAACCACCCTCATCGG+GGG | - | chr5.4:55086565-55086584 | MS.gene88781:CDS | 60.0% | |
| GGAGGTGGGCAAAGATGAGG+GGG | - | chr5.4:55086784-55086803 | MS.gene88781:CDS | 60.0% | |
| GGGAGGTGGGCAAAGATGAG+GGG | - | chr5.4:55086783-55086802 | MS.gene88781:CDS | 60.0% | |
| GGTGGATGGGGAAACTTCCG+TGG | - | chr5.4:55086671-55086690 | MS.gene88781:intron | 60.0% | |
| CCCCCGATGAGGGTGGTTAG+TGG | + | chr5.4:55086568-55086587 | None:intergenic | 65.0% | |
| CCGGCTACATGACCCGCAGA+CGG | + | chr5.4:55086816-55086835 | None:intergenic | 65.0% | |
| CCGTCTGCGGGTCATGTAGC+CGG | - | chr5.4:55086813-55086832 | MS.gene88781:CDS | 65.0% | |
| CGGCTACATGACCCGCAGAC+GGG | + | chr5.4:55086815-55086834 | None:intergenic | 65.0% | |
| GACTGATCCCCCGATGAGGG+TGG | + | chr5.4:55086575-55086594 | None:intergenic | 65.0% | |
| GCTACATGACCCGCAGACGG+GGG | + | chr5.4:55086813-55086832 | None:intergenic | 65.0% | |
| GGCTACATGACCCGCAGACG+GGG | + | chr5.4:55086814-55086833 | None:intergenic | 65.0% | |
| AGGGGGTTACCCCCGTCTGC+GGG | - | chr5.4:55086801-55086820 | MS.gene88781:CDS | 70.0% | |
| GAGGGGGTTACCCCCGTCTG+CGG | - | chr5.4:55086800-55086819 | MS.gene88781:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 55086552 | 55087145 | 55086552 | ID=MS.gene88781 |
| chr5.4 | mRNA | 55086552 | 55087145 | 55086552 | ID=MS.gene88781.t1;Parent=MS.gene88781 |
| chr5.4 | exon | 55086762 | 55087145 | 55086762 | ID=MS.gene88781.t1.exon1;Parent=MS.gene88781.t1 |
| chr5.4 | CDS | 55086762 | 55087145 | 55086762 | ID=cds.MS.gene88781.t1;Parent=MS.gene88781.t1 |
| chr5.4 | exon | 55086552 | 55086650 | 55086552 | ID=MS.gene88781.t1.exon2;Parent=MS.gene88781.t1 |
| chr5.4 | CDS | 55086552 | 55086650 | 55086552 | ID=cds.MS.gene88781.t1;Parent=MS.gene88781.t1 |
| Gene Sequence |
| Protein sequence |
