Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88788.t1 | XP_003615635.1 | 98.8 | 421 | 4 | 1 | 1 | 420 | 15 | 435 | 1.10E-222 | 782.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88788.t1 | Q93Z81 | 69.3 | 417 | 117 | 5 | 12 | 419 | 33 | 447 | 2.1e-153 | 543.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88788.t1 | G7KE49 | 98.8 | 421 | 4 | 1 | 1 | 420 | 15 | 435 | 7.9e-223 | 782.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049382 | MS.gene88788 | 0.809212 | 2.12E-50 | -1.69E-46 |
| MS.gene049758 | MS.gene88788 | 0.817148 | 3.83E-52 | -1.69E-46 |
| MS.gene049915 | MS.gene88788 | 0.812465 | 4.18E-51 | -1.69E-46 |
| MS.gene050438 | MS.gene88788 | 0.812688 | 3.74E-51 | -1.69E-46 |
| MS.gene050623 | MS.gene88788 | -0.80881 | 2.58E-50 | -1.69E-46 |
| MS.gene050815 | MS.gene88788 | 0.828862 | 7.10E-55 | -1.69E-46 |
| MS.gene051626 | MS.gene88788 | 0.837413 | 5.28E-57 | -1.69E-46 |
| MS.gene051789 | MS.gene88788 | 0.808254 | 3.39E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene88788 | 0.820528 | 6.54E-53 | -1.69E-46 |
| MS.gene052337 | MS.gene88788 | 0.803522 | 3.35E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene88788 | 0.802947 | 4.40E-49 | -1.69E-46 |
| MS.gene05288 | MS.gene88788 | 0.819474 | 1.14E-52 | -1.69E-46 |
| MS.gene053008 | MS.gene88788 | 0.805571 | 1.25E-49 | -1.69E-46 |
| MS.gene053074 | MS.gene88788 | 0.845877 | 3.09E-59 | -1.69E-46 |
| MS.gene053184 | MS.gene88788 | 0.839268 | 1.75E-57 | -1.69E-46 |
| MS.gene053630 | MS.gene88788 | 0.807441 | 5.05E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene88788 | 0.821167 | 4.66E-53 | -1.69E-46 |
| MS.gene054184 | MS.gene88788 | 0.848355 | 6.46E-60 | -1.69E-46 |
| MS.gene054185 | MS.gene88788 | 0.852657 | 4.00E-61 | -1.69E-46 |
| MS.gene054542 | MS.gene88788 | 0.816142 | 6.44E-52 | -1.69E-46 |
| MS.gene054713 | MS.gene88788 | 0.857964 | 1.14E-62 | -1.69E-46 |
| MS.gene055133 | MS.gene88788 | 0.807456 | 5.01E-50 | -1.69E-46 |
| MS.gene055608 | MS.gene88788 | 0.828717 | 7.70E-55 | -1.69E-46 |
| MS.gene055860 | MS.gene88788 | 0.812168 | 4.86E-51 | -1.69E-46 |
| MS.gene057750 | MS.gene88788 | 0.800708 | 1.27E-48 | -1.69E-46 |
| MS.gene057754 | MS.gene88788 | 0.837287 | 5.68E-57 | -1.69E-46 |
| MS.gene058042 | MS.gene88788 | 0.842783 | 2.09E-58 | -1.69E-46 |
| MS.gene058168 | MS.gene88788 | 0.832779 | 7.78E-56 | -1.69E-46 |
| MS.gene058236 | MS.gene88788 | 0.80345 | 3.47E-49 | -1.69E-46 |
| MS.gene059006 | MS.gene88788 | 0.827279 | 1.71E-54 | -1.69E-46 |
| MS.gene059124 | MS.gene88788 | 0.824309 | 8.66E-54 | -1.69E-46 |
| MS.gene059421 | MS.gene88788 | 0.820723 | 5.90E-53 | -1.69E-46 |
| MS.gene060476 | MS.gene88788 | 0.800728 | 1.26E-48 | -1.69E-46 |
| MS.gene060803 | MS.gene88788 | 0.815484 | 9.03E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88788.t1 | MTR_5g070330 | 98.812 | 421 | 4 | 1 | 1 | 420 | 15 | 435 | 0.0 | 839 |
| MS.gene88788.t1 | MTR_4g016720 | 69.880 | 415 | 111 | 6 | 11 | 418 | 34 | 441 | 0.0 | 546 |
| MS.gene88788.t1 | MTR_7g068380 | 70.297 | 404 | 113 | 4 | 11 | 410 | 34 | 434 | 0.0 | 512 |
| MS.gene88788.t1 | MTR_2g105640 | 46.455 | 409 | 201 | 6 | 13 | 411 | 38 | 438 | 1.49e-114 | 342 |
| MS.gene88788.t1 | MTR_3g082180 | 45.411 | 414 | 210 | 5 | 4 | 405 | 15 | 424 | 6.33e-111 | 333 |
| MS.gene88788.t1 | MTR_8g033030 | 64.198 | 81 | 29 | 0 | 94 | 174 | 16 | 96 | 6.31e-26 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88788.t1 | AT2G38170 | 67.482 | 409 | 122 | 5 | 11 | 411 | 32 | 437 | 0.0 | 536 |
| MS.gene88788.t1 | AT2G38170 | 67.482 | 409 | 122 | 5 | 11 | 411 | 32 | 437 | 0.0 | 536 |
| MS.gene88788.t1 | AT3G51860 | 68.571 | 420 | 117 | 5 | 11 | 419 | 32 | 447 | 0.0 | 535 |
| MS.gene88788.t1 | AT5G01490 | 58.191 | 409 | 158 | 3 | 14 | 411 | 35 | 441 | 4.01e-176 | 499 |
| MS.gene88788.t1 | AT5G01490 | 58.191 | 409 | 158 | 3 | 14 | 411 | 35 | 441 | 4.01e-176 | 499 |
| MS.gene88788.t1 | AT3G51860 | 69.110 | 382 | 103 | 5 | 11 | 381 | 32 | 409 | 8.47e-169 | 481 |
| MS.gene88788.t1 | AT2G38170 | 65.839 | 322 | 99 | 5 | 11 | 324 | 32 | 350 | 2.04e-138 | 401 |
| MS.gene88788.t1 | AT1G55730 | 51.181 | 381 | 171 | 3 | 41 | 411 | 62 | 437 | 4.51e-123 | 364 |
| MS.gene88788.t1 | AT1G55730 | 51.181 | 381 | 171 | 3 | 41 | 411 | 62 | 437 | 4.51e-123 | 364 |
| MS.gene88788.t1 | AT3G13320 | 49.606 | 381 | 177 | 3 | 41 | 411 | 62 | 437 | 5.59e-120 | 356 |
| MS.gene88788.t1 | AT1G55720 | 48.831 | 385 | 183 | 5 | 36 | 411 | 67 | 446 | 2.34e-114 | 342 |
| MS.gene88788.t1 | AT1G55720 | 48.831 | 385 | 183 | 5 | 36 | 411 | 67 | 446 | 4.70e-114 | 342 |
Find 73 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCACATTTCTTAGTATT+TGG | 0.108992 | 5.4:+55292143 | None:intergenic |
| CATGCAACAATCACACTTAA+TGG | 0.225296 | 5.4:+55287264 | None:intergenic |
| TGTTACAGCCTTTACTTTAC+AGG | 0.231614 | 5.4:-55287172 | MS.gene88788:intron |
| CATATCTTTGCTCCCTCTTA+AGG | 0.257052 | 5.4:+55289086 | None:intergenic |
| TTTACTGTTGCAGATCATTA+TGG | 0.259267 | 5.4:-55286316 | MS.gene88788:intron |
| TCAAACCTTCTCTTGGTTCT+AGG | 0.273673 | 5.4:-55289139 | MS.gene88788:CDS |
| GACTTCAATCTGCTTGAAAC+TGG | 0.291793 | 5.4:-55287216 | MS.gene88788:CDS |
| ACTAGGCTGCTTCAGATTCT+TGG | 0.297535 | 5.4:-55287660 | MS.gene88788:intron |
| GTTCTCCAAATCTTCATTCA+TGG | 0.298533 | 5.4:+55292255 | None:intergenic |
| AATGGGTATAAGAATGGATT+TGG | 0.331250 | 5.4:-55287238 | MS.gene88788:CDS |
| TCGAACCATGAATGAAGATT+TGG | 0.334079 | 5.4:-55292260 | None:intergenic |
| CATTCTCTCAAACCTTCTCT+TGG | 0.346415 | 5.4:-55289146 | MS.gene88788:CDS |
| CTAGGCTGCTTCAGATTCTT+GGG | 0.347536 | 5.4:-55287659 | MS.gene88788:intron |
| TACTCAAATTTCTATGTTTG+TGG | 0.354118 | 5.4:-55287386 | MS.gene88788:intron |
| AAAGAAATCAGATATGGTTT+TGG | 0.357259 | 5.4:-55292185 | MS.gene88788:CDS |
| TGTGATTGTTGCATGGATAA+TGG | 0.362308 | 5.4:-55287256 | MS.gene88788:CDS |
| CAAGAGAAGGTTTGAGAGAA+TGG | 0.377825 | 5.4:+55289147 | None:intergenic |
| ATAATGCAGGACATATCTTT+AGG | 0.381827 | 5.4:-55287427 | MS.gene88788:intron |
| GTTGTCAAGTTCTCCTTGCT+TGG | 0.384448 | 5.4:-55289172 | MS.gene88788:CDS |
| CTGCTTGAAACTGGATGTCT+TGG | 0.387346 | 5.4:-55287207 | MS.gene88788:CDS |
| ACGACGATAGCTTCAAAGTA+TGG | 0.389435 | 5.4:+55286288 | None:intergenic |
| TGTGAGAAAGAAATCAGATA+TGG | 0.399485 | 5.4:-55292191 | MS.gene88788:CDS |
| TGATAATTGAAGAGTAGAAT+TGG | 0.400430 | 5.4:+55288474 | None:intergenic |
| CTAGGCAGCTCACTCCTTTG+TGG | 0.409952 | 5.4:-55289121 | MS.gene88788:CDS |
| TAGATATACTTACTGATTTG+TGG | 0.418490 | 5.4:+55286967 | None:intergenic |
| GCATATTTCACCGGACCAAC+AGG | 0.422062 | 5.4:-55289929 | MS.gene88788:intron |
| ATTAGTACTCTTTACCTCAA+TGG | 0.429999 | 5.4:+55287772 | None:intergenic |
| TCTGCAGCATTTCCAACAAT+TGG | 0.443369 | 5.4:+55287601 | None:intergenic |
| GTGCTTTCTGAGTATGTTGT+GGG | 0.448183 | 5.4:-55287797 | MS.gene88788:CDS |
| GTGATTGTTGCATGGATAAT+GGG | 0.451478 | 5.4:-55287255 | MS.gene88788:CDS |
| GTGGCTTAGCAAACCTTAAG+AGG | 0.457666 | 5.4:-55289099 | MS.gene88788:CDS |
| TTGGAGTGCATTTAGTTGGT+TGG | 0.464416 | 5.4:-55287843 | MS.gene88788:CDS |
| AAATCAGCAGCAACAGCTAA+AGG | 0.486221 | 5.4:+55292064 | None:intergenic |
| ATTTGCTTACAAGAACAAAC+TGG | 0.495620 | 5.4:-55287560 | MS.gene88788:intron |
| GAGTGCATTTAGTTGGTTGG+TGG | 0.506775 | 5.4:-55287840 | MS.gene88788:CDS |
| TGAACATCAATGGCAGCAAA+TGG | 0.508723 | 5.4:+55288530 | None:intergenic |
| AATATGAAAGAAGTGATGTT+GGG | 0.510563 | 5.4:-55292118 | MS.gene88788:CDS |
| ATGTTCAAGTATGCCTTGGC+TGG | 0.511279 | 5.4:-55288514 | MS.gene88788:CDS |
| GGAAGCTGACACGTTCAGCT+AGG | 0.511657 | 5.4:+55290138 | None:intergenic |
| AGTAATCGTACCTGTTGGTC+CGG | 0.514360 | 5.4:+55289919 | None:intergenic |
| TGTGCTTTCTGAGTATGTTG+TGG | 0.515082 | 5.4:-55287798 | MS.gene88788:CDS |
| GTGTGAATGTTTCAGTTGGA+GGG | 0.516787 | 5.4:-55289270 | MS.gene88788:intron |
| AGTGCATTTAGTTGGTTGGT+GGG | 0.517025 | 5.4:-55287839 | MS.gene88788:CDS |
| ATGGATAATGGGTATAAGAA+TGG | 0.519584 | 5.4:-55287244 | MS.gene88788:CDS |
| AAATATGAAAGAAGTGATGT+TGG | 0.520820 | 5.4:-55292119 | MS.gene88788:CDS |
| CATATCTTTAGGTGTTGCAA+TGG | 0.525710 | 5.4:-55287416 | MS.gene88788:CDS |
| CATTAAGTGTGATTGTTGCA+TGG | 0.528687 | 5.4:-55287263 | MS.gene88788:CDS |
| ATATCTTTAGGTGTTGCAAT+GGG | 0.529119 | 5.4:-55287415 | MS.gene88788:CDS |
| AAGGCATACTTGAACATCAA+TGG | 0.533262 | 5.4:+55288520 | None:intergenic |
| GAAGCTGACACGTTCAGCTA+GGG | 0.534246 | 5.4:+55290139 | None:intergenic |
| GGAACTTCACACTATTTGAA+AGG | 0.534618 | 5.4:-55287048 | MS.gene88788:CDS |
| TAATTACACTTACCCTTCCA+AGG | 0.541293 | 5.4:+55292035 | None:intergenic |
| AGAATGATTGCCACCAGCCA+AGG | 0.542188 | 5.4:+55288501 | None:intergenic |
| GCAACAGCTAAAGGAACAGC+CGG | 0.546306 | 5.4:+55292073 | None:intergenic |
| GGCAGCTCACTCCTTTGTGG+TGG | 0.549103 | 5.4:-55289118 | MS.gene88788:CDS |
| AGGCAAATTGCATATTTCAC+CGG | 0.552583 | 5.4:-55289938 | MS.gene88788:CDS |
| ATTGATGTTCAAGTATGCCT+TGG | 0.556972 | 5.4:-55288518 | MS.gene88788:CDS |
| TTGGTTGGTGGGTATGACAT+TGG | 0.564585 | 5.4:-55287828 | MS.gene88788:CDS |
| TGTGCAGACCTGTAAAGTAA+AGG | 0.579580 | 5.4:+55287164 | None:intergenic |
| TAATATTGCTATGATCATCT+CGG | 0.588080 | 5.4:+55289219 | None:intergenic |
| GAATTTGATGAAATGTTATG+TGG | 0.590212 | 5.4:+55292217 | None:intergenic |
| TGAGAGAATGGAACCAAGCA+AGG | 0.600148 | 5.4:+55289159 | None:intergenic |
| GGAAATGCTGCAGAACATGC+TGG | 0.605954 | 5.4:-55287592 | MS.gene88788:CDS |
| TTCAAGTATGCCTTGGCTGG+TGG | 0.608288 | 5.4:-55288511 | MS.gene88788:CDS |
| CTAGGGGAGCAAGTCCAAGT+AGG | 0.616205 | 5.4:+55290156 | None:intergenic |
| AAGCTGACACGTTCAGCTAG+GGG | 0.628561 | 5.4:+55290140 | None:intergenic |
| TAGGCTGCTTCAGATTCTTG+GGG | 0.629621 | 5.4:-55287658 | MS.gene88788:CDS |
| AGCTGCCTAGAACCAAGAGA+AGG | 0.634661 | 5.4:+55289134 | None:intergenic |
| TGGCTTAGCAAACCTTAAGA+GGG | 0.662643 | 5.4:-55289098 | MS.gene88788:CDS |
| GGGCTTCTAAATGCAACTTG+TGG | 0.683635 | 5.4:-55289250 | MS.gene88788:CDS |
| ACATGCAAACTTACTCAGTG+AGG | 0.690735 | 5.4:+55290117 | None:intergenic |
| GGTTTGCTAAGCCACCACAA+AGG | 0.707409 | 5.4:+55289107 | None:intergenic |
| GTATGTTGTGGGAACCATTG+AGG | 0.709062 | 5.4:-55287786 | MS.gene88788:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTATAATTAAAAAAT+TGG | + | chr5.4:55287464-55287483 | None:intergenic | 0.0% |
| !! | ACTAGATTTAATAAAAATAA+AGG | + | chr5.4:55289604-55289623 | None:intergenic | 10.0% |
| !! | TTAATTAATTGATGTATTAA+CGG | - | chr5.4:55290341-55290360 | MS.gene88788:intron | 10.0% |
| !!! | ACAAATGAAATTTAAAATAT+GGG | - | chr5.4:55287256-55287275 | MS.gene88788:CDS | 10.0% |
| !!! | TAAGAATTTTTTTCTTTTTT+TGG | - | chr5.4:55287555-55287574 | MS.gene88788:intron | 10.0% |
| !! | AAATAAAATAAAAGAGAAAG+TGG | + | chr5.4:55291430-55291449 | None:intergenic | 15.0% |
| !! | AATAATATACTAAAAACCTT+AGG | - | chr5.4:55287723-55287742 | MS.gene88788:intron | 15.0% |
| !! | AGTATACTAATTAAATTCTT+TGG | + | chr5.4:55290249-55290268 | None:intergenic | 15.0% |
| !! | ATAATTTATATCTAACTAAG+TGG | + | chr5.4:55288039-55288058 | None:intergenic | 15.0% |
| !! | ATGTATATATTGTAAAACTA+TGG | + | chr5.4:55287817-55287836 | None:intergenic | 15.0% |
| !! | CTAAATATATGTTTATAAGT+GGG | + | chr5.4:55288241-55288260 | None:intergenic | 15.0% |
| !! | CTATTAAAAATGAAAACTTT+GGG | - | chr5.4:55288136-55288155 | MS.gene88788:intron | 15.0% |
| !! | TAAATATATGTTTATAAGTG+GGG | + | chr5.4:55288240-55288259 | None:intergenic | 15.0% |
| !! | TTAGGATTAATTAAAAATTG+TGG | - | chr5.4:55287741-55287760 | MS.gene88788:intron | 15.0% |
| !! | TTTATGCAAAATAAATAACT+AGG | - | chr5.4:55290876-55290895 | MS.gene88788:intron | 15.0% |
| !!! | ACAATTTTTAATTAATCCTA+AGG | + | chr5.4:55287742-55287761 | None:intergenic | 15.0% |
| !!! | CACAAATGAAATTTAAAATA+TGG | - | chr5.4:55287255-55287274 | MS.gene88788:CDS | 15.0% |
| !!! | CATATTTTAAATTTCATTTG+TGG | + | chr5.4:55287257-55287276 | None:intergenic | 15.0% |
| !!! | GATAATGATAAAGATTTTTT+AGG | + | chr5.4:55287527-55287546 | None:intergenic | 15.0% |
| !!! | GTTATTTATTTTGCATAAAA+TGG | + | chr5.4:55290875-55290894 | None:intergenic | 15.0% |
| !!! | TAAGTTATTTTAAAGAATAG+TGG | - | chr5.4:55291953-55291972 | MS.gene88788:intron | 15.0% |
| !!! | TCATTTCTAAGTTTTTTTTT+GGG | - | chr5.4:55291919-55291938 | MS.gene88788:intron | 15.0% |
| !!! | TTATAGATATTTTATCCATT+TGG | + | chr5.4:55287062-55287081 | None:intergenic | 15.0% |
| !!! | TTCATTTCTAAGTTTTTTTT+TGG | - | chr5.4:55291918-55291937 | MS.gene88788:intron | 15.0% |
| !!! | TTTTTTTAATTTGTGTGAAA+TGG | - | chr5.4:55289839-55289858 | MS.gene88788:intron | 15.0% |
| !! | AAGATAATACTCAATTTAAG+TGG | + | chr5.4:55290455-55290474 | None:intergenic | 20.0% |
| !! | AATCAATCATAAATTTGATG+CGG | - | chr5.4:55290526-55290545 | MS.gene88788:intron | 20.0% |
| !! | AATTGATATGTTTAGACATT+CGG | + | chr5.4:55289708-55289727 | None:intergenic | 20.0% |
| !! | ACAAAAAAGAACAAAAAACT+TGG | + | chr5.4:55292198-55292217 | None:intergenic | 20.0% |
| !! | ACAAATAAATTACAAGATCT+TGG | - | chr5.4:55292088-55292107 | MS.gene88788:CDS | 20.0% |
| !! | ACATACATAAATATTCGATA+AGG | - | chr5.4:55289770-55289789 | MS.gene88788:intron | 20.0% |
| !! | ATTATTAAATGAACAGAAAC+AGG | - | chr5.4:55289960-55289979 | MS.gene88788:intron | 20.0% |
| !! | ATTCTGCTTTGTAAATTATT+TGG | + | chr5.4:55291030-55291049 | None:intergenic | 20.0% |
| !! | CCACTTATAAACATATATTT+AGG | - | chr5.4:55288239-55288258 | MS.gene88788:intron | 20.0% |
| !! | CCTAAATATATGTTTATAAG+TGG | + | chr5.4:55288242-55288261 | None:intergenic | 20.0% |
| !! | CCTATTAAAAATGAAAACTT+TGG | - | chr5.4:55288135-55288154 | MS.gene88788:intron | 20.0% |
| !! | GATTATAGAAACTTCAAAAA+TGG | - | chr5.4:55291798-55291817 | MS.gene88788:intron | 20.0% |
| !! | TAGTAAAAAAAATATGTGCA+AGG | - | chr5.4:55288816-55288835 | MS.gene88788:intron | 20.0% |
| !!! | ACTCAGTTTATTGAAATTTT+TGG | + | chr5.4:55289248-55289267 | None:intergenic | 20.0% |
| !!! | ATTGTTTTAGCTCTTAATTT+AGG | + | chr5.4:55289564-55289583 | None:intergenic | 20.0% |
| !!! | ATTTTCTTTCAAAAACTTGT+AGG | - | chr5.4:55292032-55292051 | MS.gene88788:intron | 20.0% |
| !!! | CCAAAGTTTTCATTTTTAAT+AGG | + | chr5.4:55288138-55288157 | None:intergenic | 20.0% |
| !!! | GAGTACTAATATGTTTATTT+TGG | - | chr5.4:55290794-55290813 | MS.gene88788:intron | 20.0% |
| !!! | TAAGCAAATTTTGACTTTTT+AGG | - | chr5.4:55286623-55286642 | MS.gene88788:intron | 20.0% |
| !!! | TCTTTTAGTTCATAAATATG+TGG | - | chr5.4:55287225-55287244 | MS.gene88788:CDS | 20.0% |
| !!! | TTGTACTACTATTTTTCATA+TGG | + | chr5.4:55291685-55291704 | None:intergenic | 20.0% |
| !!! | TTTTCTTTCAAAAACTTGTA+GGG | - | chr5.4:55292033-55292052 | MS.gene88788:intron | 20.0% |
| ! | AAAAAAAATATGTGCAAGGT+AGG | - | chr5.4:55288820-55288839 | MS.gene88788:intron | 25.0% |
| ! | AAAAATATTTGATGCACAAG+AGG | - | chr5.4:55290170-55290189 | MS.gene88788:CDS | 25.0% |
| ! | AAATATGAAAGAAGTGATGT+TGG | - | chr5.4:55286434-55286453 | MS.gene88788:intron | 25.0% |
| ! | AAATCCACTTAAATTATGTG+TGG | - | chr5.4:55290635-55290654 | MS.gene88788:intron | 25.0% |
| ! | AATATGAAAGAAGTGATGTT+GGG | - | chr5.4:55286435-55286454 | MS.gene88788:intron | 25.0% |
| ! | AATGCTAAAATTTACATGTC+AGG | - | chr5.4:55287987-55288006 | MS.gene88788:intron | 25.0% |
| ! | ACTTATTAGATTAGAAGTCA+TGG | + | chr5.4:55286841-55286860 | None:intergenic | 25.0% |
| ! | ATAAGCGATTAAGTGTAAAA+TGG | + | chr5.4:55289137-55289156 | None:intergenic | 25.0% |
| ! | ATGCTAAAATTTACATGTCA+GGG | - | chr5.4:55287988-55288007 | MS.gene88788:intron | 25.0% |
| ! | CAAGTAATCACAAAAATTGA+CGG | + | chr5.4:55292138-55292157 | None:intergenic | 25.0% |
| ! | CATATTCATCTCCTATAAAT+AGG | + | chr5.4:55291767-55291786 | None:intergenic | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr5.4:55286667-55286648 | None:intergenic | 25.0% |
| ! | CTATTTATAGGAGATGAATA+TGG | - | chr5.4:55291765-55291784 | MS.gene88788:intron | 25.0% |
| ! | GAACATACAATATGATGATA+TGG | + | chr5.4:55287177-55287196 | None:intergenic | 25.0% |
| ! | GAAGTCATAGTATGAATTAA+TGG | + | chr5.4:55286547-55286566 | None:intergenic | 25.0% |
| ! | GAATTTGATGAAATGTTATG+TGG | + | chr5.4:55286339-55286358 | None:intergenic | 25.0% |
| ! | TAAAATCGCAAGTAAACTTA+TGG | - | chr5.4:55289638-55289657 | MS.gene88788:intron | 25.0% |
| ! | TAATATTGCTATGATCATCT+CGG | + | chr5.4:55289337-55289356 | None:intergenic | 25.0% |
| ! | TACTCAAATTTCTATGTTTG+TGG | - | chr5.4:55291167-55291186 | MS.gene88788:intron | 25.0% |
| ! | TATGATGTTGAGAGTTAAAA+TGG | + | chr5.4:55291871-55291890 | None:intergenic | 25.0% |
| ! | TCAATTATTGTGACATAGAA+TGG | - | chr5.4:55289871-55289890 | MS.gene88788:intron | 25.0% |
| ! | TCATCACATTTCTTAGTATT+TGG | + | chr5.4:55286413-55286432 | None:intergenic | 25.0% |
| ! | TGAATGCAAAATTAGATCAA+TGG | - | chr5.4:55290836-55290855 | MS.gene88788:intron | 25.0% |
| ! | TGATAATTGAAGAGTAGAAT+TGG | + | chr5.4:55290082-55290101 | None:intergenic | 25.0% |
| ! | TTAAAAATGAAAACTTTGGG+AGG | - | chr5.4:55288139-55288158 | MS.gene88788:intron | 25.0% |
| ! | TTAGTTCATAAATATGTGGA+CGG | - | chr5.4:55287229-55287248 | MS.gene88788:CDS | 25.0% |
| ! | TTGAGTATTATCTTCATACA+CGG | - | chr5.4:55290461-55290480 | MS.gene88788:intron | 25.0% |
| !! | AAAGAAATCAGATATGGTTT+TGG | - | chr5.4:55286368-55286387 | MS.gene88788:intron | 25.0% |
| !! | AACATTCACACAAATTGTTT+TGG | + | chr5.4:55289274-55289293 | None:intergenic | 25.0% |
| !! | AATTTGCTTATAATAGTGAC+CGG | - | chr5.4:55286722-55286741 | MS.gene88788:intron | 25.0% |
| !! | AATTTGCTTATAATAGTGAC+CGG | + | chr5.4:55286741-55286722 | None:intergenic | 25.0% |
| !! | ATAATTTTGCTACCAATTGT+TGG | - | chr5.4:55290940-55290959 | MS.gene88788:intron | 25.0% |
| !! | ATTTTTACTGCTCAAAGAAA+TGG | + | chr5.4:55287284-55287303 | None:intergenic | 25.0% |
| !! | TAATACAAAATCGACTTATG+AGG | - | chr5.4:55288205-55288224 | MS.gene88788:intron | 25.0% |
| !! | TCTCATGTCAATTATTTTCA+AGG | - | chr5.4:55287928-55287947 | MS.gene88788:intron | 25.0% |
| !! | TTATTTAAGTTCCTTAACTG+TGG | - | chr5.4:55287897-55287916 | MS.gene88788:intron | 25.0% |
| !! | TTTTGTATTATTGTGTTCTG+AGG | + | chr5.4:55288195-55288214 | None:intergenic | 25.0% |
| !!! | AATTTCTTAAAAGCACTGTT+TGG | - | chr5.4:55291098-55291117 | MS.gene88788:intron | 25.0% |
| !!! | CTACGATATGTATTTTGAAA+TGG | + | chr5.4:55288701-55288720 | None:intergenic | 25.0% |
| !!! | TAGATATACTTACTGATTTG+TGG | + | chr5.4:55291589-55291608 | None:intergenic | 25.0% |
| !!! | TATGCGATGTATTTTTTTGA+GGG | + | chr5.4:55287034-55287053 | None:intergenic | 25.0% |
| !!! | TTATGCGATGTATTTTTTTG+AGG | + | chr5.4:55287035-55287054 | None:intergenic | 25.0% |
| !!! | TTTTGGTGACAAATAATGTT+CGG | - | chr5.4:55286385-55286404 | MS.gene88788:intron | 25.0% |
| !!! | TTTTTCGATGAGTTTTCAAT+TGG | + | chr5.4:55290155-55290174 | None:intergenic | 25.0% |
| AACACCACACATAATTTAAG+TGG | + | chr5.4:55290642-55290661 | None:intergenic | 30.0% | |
| AATATACATACCCTTATACG+AGG | - | chr5.4:55287335-55287354 | MS.gene88788:intron | 30.0% | |
| AGAAGCAGTAATATCTATGA+AGG | - | chr5.4:55288887-55288906 | MS.gene88788:intron | 30.0% | |
| AGGTTATGTGAAAATGTGTA+TGG | - | chr5.4:55288840-55288859 | MS.gene88788:intron | 30.0% | |
| ATAATGCAGGACATATCTTT+AGG | - | chr5.4:55291126-55291145 | MS.gene88788:intron | 30.0% | |
| ATATAAAGTTGTAGCTCAAG+TGG | - | chr5.4:55287858-55287877 | MS.gene88788:CDS | 30.0% | |
| ATATACATACCCTTATACGA+GGG | - | chr5.4:55287336-55287355 | MS.gene88788:intron | 30.0% | |
| ATTAGTACTCTTTACCTCAA+TGG | + | chr5.4:55290784-55290803 | None:intergenic | 30.0% | |
| ATTTGCTTACAAGAACAAAC+TGG | - | chr5.4:55290993-55291012 | MS.gene88788:intron | 30.0% | |
| ATTTGTGTGAATGTTTCAGT+TGG | - | chr5.4:55289279-55289298 | MS.gene88788:intron | 30.0% | |
| CATCTCCTATAAATAGGATT+AGG | + | chr5.4:55291761-55291780 | None:intergenic | 30.0% | |
| GATCGCTTTATACATGTTAA+GGG | - | chr5.4:55288723-55288742 | MS.gene88788:intron | 30.0% | |
| GCACAATGTGTAATCAAAAA+GGG | + | chr5.4:55289517-55289536 | None:intergenic | 30.0% | |
| GGTAGAAATCGATGTATTAT+AGG | - | chr5.4:55287618-55287637 | MS.gene88788:CDS | 30.0% | |
| GGTTCTTGTAGATGTTAAAA+TGG | + | chr5.4:55291850-55291869 | None:intergenic | 30.0% | |
| GTAGTACAACTTCAATTTGT+AGG | - | chr5.4:55291696-55291715 | MS.gene88788:intron | 30.0% | |
| GTGTTCCTAATCCTATTTAT+AGG | - | chr5.4:55291753-55291772 | MS.gene88788:intron | 30.0% | |
| TAGTTCATAAATATGTGGAC+GGG | - | chr5.4:55287230-55287249 | MS.gene88788:CDS | 30.0% | |
| TCATAAATTTGATGCGGTTA+TGG | - | chr5.4:55290532-55290551 | MS.gene88788:intron | 30.0% | |
| TGATCGCTTTATACATGTTA+AGG | - | chr5.4:55288722-55288741 | MS.gene88788:intron | 30.0% | |
| TGCACAATGTGTAATCAAAA+AGG | + | chr5.4:55289518-55289537 | None:intergenic | 30.0% | |
| TGTGAGAAAGAAATCAGATA+TGG | - | chr5.4:55286362-55286381 | MS.gene88788:intron | 30.0% | |
| TTACACATTGTGCATACTAA+AGG | - | chr5.4:55289524-55289543 | MS.gene88788:intron | 30.0% | |
| TTCATAGATATTACTGCTTC+TGG | + | chr5.4:55288888-55288907 | None:intergenic | 30.0% | |
| TTCTGGTATCAAATACATGT+CGG | + | chr5.4:55289004-55289023 | None:intergenic | 30.0% | |
| TTTACTGTTGCAGATCATTA+TGG | - | chr5.4:55292237-55292256 | MS.gene88788:CDS | 30.0% | |
| ! | AAAAAGCAGTGATAGGATTT+TGG | - | chr5.4:55290691-55290710 | MS.gene88788:intron | 30.0% |
| ! | AAAATTCAAGTTTACAGTCG+AGG | + | chr5.4:55289738-55289757 | None:intergenic | 30.0% |
| ! | AATGGGTATAAGAATGGATT+TGG | - | chr5.4:55291315-55291334 | MS.gene88788:intron | 30.0% |
| ! | ACTCTATTTCTCAAAAGAAG+TGG | - | chr5.4:55291890-55291909 | MS.gene88788:intron | 30.0% |
| ! | ATATCTTTAGGTGTTGCAAT+GGG | - | chr5.4:55291138-55291157 | MS.gene88788:intron | 30.0% |
| ! | GATTTTGTTGAGTCTTTTGT+AGG | - | chr5.4:55291480-55291499 | MS.gene88788:intron | 30.0% |
| ! | GGAGTTTTTGATACATTTGT+GGG | + | chr5.4:55289116-55289135 | None:intergenic | 30.0% |
| ! | TCTTACTGAAAATTTTCACC+TGG | - | chr5.4:55288577-55288596 | MS.gene88788:CDS | 30.0% |
| ! | TGGAGTTTTTGATACATTTG+TGG | + | chr5.4:55289117-55289136 | None:intergenic | 30.0% |
| !! | AATTCATTGCTTTTGTTGCT+TGG | - | chr5.4:55289991-55290010 | MS.gene88788:intron | 30.0% |
| !! | AGCTTTAAGTTCATTACATC+TGG | - | chr5.4:55291069-55291088 | MS.gene88788:intron | 30.0% |
| !! | ATGGATAATGGGTATAAGAA+TGG | - | chr5.4:55291309-55291328 | MS.gene88788:intron | 30.0% |
| !! | TGATTTTTATAGCCTTGGAA+GGG | - | chr5.4:55286506-55286525 | MS.gene88788:intron | 30.0% |
| AAGGCATACTTGAACATCAA+TGG | + | chr5.4:55290036-55290055 | None:intergenic | 35.0% | |
| ACATCGCATAATCATCCAAA+TGG | - | chr5.4:55287044-55287063 | MS.gene88788:CDS | 35.0% | |
| AGAGAAAGTGGAATGTATGA+AGG | + | chr5.4:55291418-55291437 | None:intergenic | 35.0% | |
| AGGCAAATTGCATATTTCAC+CGG | - | chr5.4:55288615-55288634 | MS.gene88788:intron | 35.0% | |
| ATTAACGGTCAACACATCAT+AGG | - | chr5.4:55290356-55290375 | MS.gene88788:intron | 35.0% | |
| ATTGATGTTCAAGTATGCCT+TGG | - | chr5.4:55290035-55290054 | MS.gene88788:intron | 35.0% | |
| ATTTCTCGCAAGTAAACTCA+TGG | - | chr5.4:55289670-55289689 | MS.gene88788:intron | 35.0% | |
| CATGCAACAATCACACTTAA+TGG | + | chr5.4:55291292-55291311 | None:intergenic | 35.0% | |
| CATTAAGTGTGATTGTTGCA+TGG | - | chr5.4:55291290-55291309 | MS.gene88788:intron | 35.0% | |
| CATTGTGCATACTAAAGGAA+TGG | - | chr5.4:55289529-55289548 | MS.gene88788:intron | 35.0% | |
| CTGTTTGGTTACTATAATGC+AGG | - | chr5.4:55291113-55291132 | MS.gene88788:intron | 35.0% | |
| CTTACAAGAACAAACTGGTA+GGG | - | chr5.4:55290998-55291017 | MS.gene88788:intron | 35.0% | |
| GAAGTCATGGCATATAAAGA+TGG | + | chr5.4:55286828-55286847 | None:intergenic | 35.0% | |
| GATGATGAAAAAGCAGTGAT+AGG | - | chr5.4:55290684-55290703 | MS.gene88788:intron | 35.0% | |
| GCAGTAATATCTATGAAGGT+CGG | - | chr5.4:55288891-55288910 | MS.gene88788:intron | 35.0% | |
| GGAACTTCACACTATTTGAA+AGG | - | chr5.4:55291505-55291524 | MS.gene88788:intron | 35.0% | |
| GTGATTGTTGCATGGATAAT+GGG | - | chr5.4:55291298-55291317 | MS.gene88788:intron | 35.0% | |
| GTTTAAAAAACTACTCCCTC+CGG | + | chr5.4:55286744-55286763 | None:intergenic | 35.0% | |
| TAATTACACTTACCCTTCCA+AGG | + | chr5.4:55286521-55286540 | None:intergenic | 35.0% | |
| TACCAGAACACACTAATTTG+AGG | - | chr5.4:55289016-55289035 | MS.gene88788:intron | 35.0% | |
| TACGATTACTCTTTCGTTCA+TGG | - | chr5.4:55288647-55288666 | MS.gene88788:intron | 35.0% | |
| TATAGTGCACCATCAAACAA+AGG | - | chr5.4:55292164-55292183 | MS.gene88788:CDS | 35.0% | |
| TCACAAAAATTGACGGTTCA+TGG | + | chr5.4:55292131-55292150 | None:intergenic | 35.0% | |
| TGTGATTGTTGCATGGATAA+TGG | - | chr5.4:55291297-55291316 | MS.gene88788:intron | 35.0% | |
| TGTTACAGCCTTTACTTTAC+AGG | - | chr5.4:55291381-55291400 | MS.gene88788:intron | 35.0% | |
| TTGATACATTTGTGGGTGTA+GGG | + | chr5.4:55289109-55289128 | None:intergenic | 35.0% | |
| TTTGATACATTTGTGGGTGT+AGG | + | chr5.4:55289110-55289129 | None:intergenic | 35.0% | |
| ! | ACTGAAAATTTTCACCTGGA+CGG | - | chr5.4:55288581-55288600 | MS.gene88788:intron | 35.0% |
| ! | AGGTTATCTTTTGTGTGATG+TGG | - | chr5.4:55288259-55288278 | MS.gene88788:intron | 35.0% |
| ! | CATATCTTTAGGTGTTGCAA+TGG | - | chr5.4:55291137-55291156 | MS.gene88788:intron | 35.0% |
| ! | CGAGCTTTCTTGCAATTTTA+TGG | - | chr5.4:55287139-55287158 | MS.gene88788:intron | 35.0% |
| ! | CGATTTCTACCTTTTTCTCA+CGG | + | chr5.4:55287609-55287628 | None:intergenic | 35.0% |
| ! | GAATTCACTCCTTTGTTTGA+TGG | + | chr5.4:55292176-55292195 | None:intergenic | 35.0% |
| ! | GTTGAGTCTAAAATAACCAG+TGG | - | chr5.4:55287763-55287782 | MS.gene88788:intron | 35.0% |
| ! | TTGTTGAGTCTTTTGTAGGA+TGG | - | chr5.4:55291484-55291503 | MS.gene88788:intron | 35.0% |
| ! | TTTTAGGCACTACGTATACT+AGG | + | chr5.4:55287511-55287530 | None:intergenic | 35.0% |
| !! | AGCCAGCAATATTTTTATGG+AGG | - | chr5.4:55287789-55287808 | MS.gene88788:CDS | 35.0% |
| !! | ATGTGTGGTGTTTGATTTTC+AGG | - | chr5.4:55290650-55290669 | MS.gene88788:intron | 35.0% |
| !! | ATTTTTGCTTTGAGCCTACT+TGG | - | chr5.4:55288383-55288402 | MS.gene88788:intron | 35.0% |
| !! | CCAGCAATATTTTTATGGAG+GGG | - | chr5.4:55287791-55287810 | MS.gene88788:CDS | 35.0% |
| !! | CTGATTTTTATAGCCTTGGA+AGG | - | chr5.4:55286505-55286524 | MS.gene88788:intron | 35.0% |
| !! | GCCAGCAATATTTTTATGGA+GGG | - | chr5.4:55287790-55287809 | MS.gene88788:CDS | 35.0% |
| !! | TGTATTATTGTGTTCTGAGG+CGG | + | chr5.4:55288192-55288211 | None:intergenic | 35.0% |
| !!! | AGATGGTTTTGTGATTACTG+AGG | + | chr5.4:55286811-55286830 | None:intergenic | 35.0% |
| !!! | GATTTTGGAGTGCATTTAGT+TGG | - | chr5.4:55290706-55290725 | MS.gene88788:intron | 35.0% |
| !!! | GGGAGTAGTTTTTTAAACTG+AGG | - | chr5.4:55286746-55286765 | MS.gene88788:intron | 35.0% |
| !!! | TAAGCTTGTTGTGCTTTTTC+CGG | - | chr5.4:55286461-55286480 | MS.gene88788:intron | 35.0% |
| AAATCAGCAGCAACAGCTAA+AGG | + | chr5.4:55286492-55286511 | None:intergenic | 40.0% | |
| ACACTGACACGACATGTATT+TGG | + | chr5.4:55288975-55288994 | None:intergenic | 40.0% | |
| ACATGCAAACTTACTCAGTG+AGG | + | chr5.4:55288439-55288458 | None:intergenic | 40.0% | |
| AGAGTTTCGAACCACAGTTA+AGG | + | chr5.4:55287911-55287930 | None:intergenic | 40.0% | |
| AGGCTCAAAGCAAAAATCCA+AGG | + | chr5.4:55288380-55288399 | None:intergenic | 40.0% | |
| AGTGCATTTAGTTGGTTGGT+GGG | - | chr5.4:55290714-55290733 | MS.gene88788:intron | 40.0% | |
| ATTACTGAGGTGGTGAAGTT+AGG | + | chr5.4:55286798-55286817 | None:intergenic | 40.0% | |
| CAAGAGAAGGTTTGAGAGAA+TGG | + | chr5.4:55289409-55289428 | None:intergenic | 40.0% | |
| CATATCTTTGCTCCCTCTTA+AGG | + | chr5.4:55289470-55289489 | None:intergenic | 40.0% | |
| CATTCTCTCAAACCTTCTCT+TGG | - | chr5.4:55289407-55289426 | MS.gene88788:intron | 40.0% | |
| CCCCTCCATAAAAATATTGC+TGG | + | chr5.4:55287794-55287813 | None:intergenic | 40.0% | |
| CTCCTCAAATTAGTGTGTTC+TGG | + | chr5.4:55289021-55289040 | None:intergenic | 40.0% | |
| GAAAGAGTAATCGTACCTGT+TGG | + | chr5.4:55288642-55288661 | None:intergenic | 40.0% | |
| GACTTCAATCTGCTTGAAAC+TGG | - | chr5.4:55291337-55291356 | MS.gene88788:intron | 40.0% | |
| GCTTACAAGAACAAACTGGT+AGG | - | chr5.4:55290997-55291016 | MS.gene88788:intron | 40.0% | |
| GTGCTTTCTGAGTATGTTGT+GGG | - | chr5.4:55290756-55290775 | MS.gene88788:intron | 40.0% | |
| GTGGTGAAGTTAGGAATGAA+GGG | + | chr5.4:55286789-55286808 | None:intergenic | 40.0% | |
| GTGTGAATGTTTCAGTTGGA+GGG | - | chr5.4:55289283-55289302 | MS.gene88788:intron | 40.0% | |
| TCTCATGTCTGTGTCGTATT+TGG | + | chr5.4:55288944-55288963 | None:intergenic | 40.0% | |
| TCTGCAGCATTTCCAACAAT+TGG | + | chr5.4:55290955-55290974 | None:intergenic | 40.0% | |
| TGAACATCAATGGCAGCAAA+TGG | + | chr5.4:55290026-55290045 | None:intergenic | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr5.4:55286726-55286745 | MS.gene88788:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | chr5.4:55286745-55286726 | None:intergenic | 40.0% | |
| TGGCTTAGCAAACCTTAAGA+GGG | - | chr5.4:55289455-55289474 | MS.gene88788:intron | 40.0% | |
| TGTGCAGACCTGTAAAGTAA+AGG | + | chr5.4:55291392-55291411 | None:intergenic | 40.0% | |
| TGTGCTTTCTGAGTATGTTG+TGG | - | chr5.4:55290755-55290774 | MS.gene88788:intron | 40.0% | |
| TGTGTGAATGTTTCAGTTGG+AGG | - | chr5.4:55289282-55289301 | MS.gene88788:intron | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr5.4:55286725-55286744 | MS.gene88788:intron | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr5.4:55286744-55286725 | None:intergenic | 40.0% | |
| TTGGAGTGCATTTAGTTGGT+TGG | - | chr5.4:55290710-55290729 | MS.gene88788:intron | 40.0% | |
| ! | CTTTGATAGCCGTGAGAAAA+AGG | - | chr5.4:55287597-55287616 | MS.gene88788:CDS | 40.0% |
| ! | GAGTCTAAAATAACCAGTGG+CGG | - | chr5.4:55287766-55287785 | MS.gene88788:intron | 40.0% |
| ! | TCAAACCTTCTCTTGGTTCT+AGG | - | chr5.4:55289414-55289433 | MS.gene88788:intron | 40.0% |
| ! | TTAGCATTTGTTACTCCCTC+CGG | - | chr5.4:55286591-55286610 | MS.gene88788:intron | 40.0% |
| !! | ACACGACATGTATTTGGTGT+CGG | + | chr5.4:55288969-55288988 | None:intergenic | 40.0% |
| !! | AGGAGTATTCGTGTTTCGTA+GGG | - | chr5.4:55289036-55289055 | MS.gene88788:intron | 40.0% |
| !! | CGGAGCCAGCAATATTTTTA+TGG | - | chr5.4:55287786-55287805 | MS.gene88788:intron | 40.0% |
| !! | TCATGGACTAGACTAGTGTA+CGG | - | chr5.4:55288664-55288683 | MS.gene88788:intron | 40.0% |
| !! | TGTGGTGTTTGATTTTCAGG+TGG | - | chr5.4:55290653-55290672 | MS.gene88788:intron | 40.0% |
| !!! | GCTGCTGATTTTTATAGCCT+TGG | - | chr5.4:55286501-55286520 | MS.gene88788:intron | 40.0% |
| !!! | TGGTTTTGTGATTACTGAGG+TGG | + | chr5.4:55286808-55286827 | None:intergenic | 40.0% |
| ACTAGGCTGCTTCAGATTCT+TGG | - | chr5.4:55290893-55290912 | MS.gene88788:intron | 45.0% | |
| AGTAATCGTACCTGTTGGTC+CGG | + | chr5.4:55288637-55288656 | None:intergenic | 45.0% | |
| ATGTTCAAGTATGCCTTGGC+TGG | - | chr5.4:55290039-55290058 | MS.gene88788:intron | 45.0% | |
| CAAGTGCTACCCTCGTATAA+GGG | + | chr5.4:55287348-55287367 | None:intergenic | 45.0% | |
| CTAGGCTGCTTCAGATTCTT+GGG | - | chr5.4:55290894-55290913 | MS.gene88788:intron | 45.0% | |
| CTGCTTGAAACTGGATGTCT+TGG | - | chr5.4:55291346-55291365 | MS.gene88788:intron | 45.0% | |
| CTTATACGAGGGTAGCACTT+GGG | - | chr5.4:55287347-55287366 | MS.gene88788:intron | 45.0% | |
| GAAAGCCACTTGTGACATTG+TGG | + | chr5.4:55287401-55287420 | None:intergenic | 45.0% | |
| GAGTGCATTTAGTTGGTTGG+TGG | - | chr5.4:55290713-55290732 | MS.gene88788:intron | 45.0% | |
| GCAAAAATCCAAGGCTACGA+TGG | + | chr5.4:55288371-55288390 | None:intergenic | 45.0% | |
| GCACTACGTATACTAGGCAA+TGG | + | chr5.4:55287505-55287524 | None:intergenic | 45.0% | |
| GGGCTTCTAAATGCAACTTG+TGG | - | chr5.4:55289303-55289322 | MS.gene88788:intron | 45.0% | |
| GGTGGTGAAGTTAGGAATGA+AGG | + | chr5.4:55286790-55286809 | None:intergenic | 45.0% | |
| GTATGTTGTGGGAACCATTG+AGG | - | chr5.4:55290767-55290786 | MS.gene88788:intron | 45.0% | |
| GTCAACCACAATGTCACAAG+TGG | - | chr5.4:55287393-55287412 | MS.gene88788:CDS | 45.0% | |
| GTGGCTTAGCAAACCTTAAG+AGG | - | chr5.4:55289454-55289473 | MS.gene88788:intron | 45.0% | |
| GTTGTCAAGTTCTCCTTGCT+TGG | - | chr5.4:55289381-55289400 | MS.gene88788:intron | 45.0% | |
| TAGGCTGCTTCAGATTCTTG+GGG | - | chr5.4:55290895-55290914 | MS.gene88788:intron | 45.0% | |
| TGAGAGAATGGAACCAAGCA+AGG | + | chr5.4:55289397-55289416 | None:intergenic | 45.0% | |
| ! | GTTTTTCTCCATCGTAGCCT+TGG | - | chr5.4:55288360-55288379 | MS.gene88788:intron | 45.0% |
| ! | TTTTACCTTGTACCCCCAAG+CGG | - | chr5.4:55289079-55289098 | MS.gene88788:intron | 45.0% |
| !! | GAGGAGTATTCGTGTTTCGT+AGG | - | chr5.4:55289035-55289054 | MS.gene88788:intron | 45.0% |
| !! | TTGGTTGGTGGGTATGACAT+TGG | - | chr5.4:55290725-55290744 | MS.gene88788:intron | 45.0% |
| !! | TTCAATAATTAATTATTTAA+AGG | + | chr5.4:55287705-55287724 | None:intergenic | 5.0% |
| !!! | ATATATATTCTAAATTTTTT+AGG | - | chr5.4:55291264-55291283 | MS.gene88788:intron | 5.0% |
| AAGCTGACACGTTCAGCTAG+GGG | + | chr5.4:55288416-55288435 | None:intergenic | 50.0% | |
| AGAATGATTGCCACCAGCCA+AGG | + | chr5.4:55290055-55290074 | None:intergenic | 50.0% | |
| AGCTGCCTAGAACCAAGAGA+AGG | + | chr5.4:55289422-55289441 | None:intergenic | 50.0% | |
| CCAAGTGCTACCCTCGTATA+AGG | + | chr5.4:55287349-55287368 | None:intergenic | 50.0% | |
| CCTTATACGAGGGTAGCACT+TGG | - | chr5.4:55287346-55287365 | MS.gene88788:intron | 50.0% | |
| GAAGCTGACACGTTCAGCTA+GGG | + | chr5.4:55288417-55288436 | None:intergenic | 50.0% | |
| GCAACAGCTAAAGGAACAGC+CGG | + | chr5.4:55286483-55286502 | None:intergenic | 50.0% | |
| GCATATTTCACCGGACCAAC+AGG | - | chr5.4:55288624-55288643 | MS.gene88788:intron | 50.0% | |
| GGAAATGCTGCAGAACATGC+TGG | - | chr5.4:55290961-55290980 | MS.gene88788:intron | 50.0% | |
| TTCAAGTATGCCTTGGCTGG+TGG | - | chr5.4:55290042-55290061 | MS.gene88788:intron | 50.0% | |
| !! | GGTTTGCTAAGCCACCACAA+AGG | + | chr5.4:55289449-55289468 | None:intergenic | 50.0% |
| CACTTGGGTGACACTGTGGT+TGG | - | chr5.4:55287362-55287381 | MS.gene88788:intron | 55.0% | |
| CCTGGACGGCATGAACTTGA+AGG | - | chr5.4:55288595-55288614 | MS.gene88788:intron | 55.0% | |
| CTAGGCAGCTCACTCCTTTG+TGG | - | chr5.4:55289432-55289451 | MS.gene88788:intron | 55.0% | |
| CTAGGGGAGCAAGTCCAAGT+AGG | + | chr5.4:55288400-55288419 | None:intergenic | 55.0% | |
| GGAAGCTGACACGTTCAGCT+AGG | + | chr5.4:55288418-55288437 | None:intergenic | 55.0% | |
| GTAGCACTTGGGTGACACTG+TGG | - | chr5.4:55287358-55287377 | MS.gene88788:intron | 55.0% | |
| ! | AGGGGGATATGGGAGGTACA+TGG | + | chr5.4:55288165-55288184 | None:intergenic | 55.0% |
| ! | CCTTCAAGTTCATGCCGTCC+AGG | + | chr5.4:55288598-55288617 | None:intergenic | 55.0% |
| !! | AATATTGCTGGCTCCGCCAC+TGG | + | chr5.4:55287782-55287801 | None:intergenic | 55.0% |
| !! | GACACTGTGGTTGGTGACAC+TGG | - | chr5.4:55287371-55287390 | MS.gene88788:intron | 55.0% |
| !! | TGTGTTCTGAGGCGGAGCTA+GGG | + | chr5.4:55288184-55288203 | None:intergenic | 55.0% |
| !! | TTGTGTTCTGAGGCGGAGCT+AGG | + | chr5.4:55288185-55288204 | None:intergenic | 55.0% |
| AGGCGGAGCTAGGGGGATAT+GGG | + | chr5.4:55288175-55288194 | None:intergenic | 60.0% | |
| GGCAGCTCACTCCTTTGTGG+TGG | - | chr5.4:55289435-55289454 | MS.gene88788:intron | 60.0% | |
| GGGTGTAGGGATCTCCGCTT+GGG | + | chr5.4:55289096-55289115 | None:intergenic | 60.0% | |
| GGTGTAGGGATCTCCGCTTG+GGG | + | chr5.4:55289095-55289114 | None:intergenic | 60.0% | |
| GTGTAGGGATCTCCGCTTGG+GGG | + | chr5.4:55289094-55289113 | None:intergenic | 60.0% | |
| TGGGTGTAGGGATCTCCGCT+TGG | + | chr5.4:55289097-55289116 | None:intergenic | 60.0% | |
| ! | GATCTCCGCTTGGGGGTACA+AGG | + | chr5.4:55289087-55289106 | None:intergenic | 60.0% |
| !! | GTGTTCTGAGGCGGAGCTAG+GGG | + | chr5.4:55288183-55288202 | None:intergenic | 60.0% |
| !! | TGTTCTGAGGCGGAGCTAGG+GGG | + | chr5.4:55288182-55288201 | None:intergenic | 60.0% |
| CGGAGCTAGGGGGATATGGG+AGG | + | chr5.4:55288172-55288191 | None:intergenic | 65.0% | |
| GAGGCGGAGCTAGGGGGATA+TGG | + | chr5.4:55288176-55288195 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 55286300 | 55292275 | 55286300 | ID=MS.gene88788 |
| chr5.4 | mRNA | 55286300 | 55292275 | 55286300 | ID=MS.gene88788.t1;Parent=MS.gene88788 |
| chr5.4 | exon | 55292048 | 55292275 | 55292048 | ID=MS.gene88788.t1.exon1;Parent=MS.gene88788.t1 |
| chr5.4 | CDS | 55292048 | 55292275 | 55292048 | ID=cds.MS.gene88788.t1;Parent=MS.gene88788.t1 |
| chr5.4 | exon | 55290131 | 55290198 | 55290131 | ID=MS.gene88788.t1.exon2;Parent=MS.gene88788.t1 |
| chr5.4 | CDS | 55290131 | 55290198 | 55290131 | ID=cds.MS.gene88788.t1;Parent=MS.gene88788.t1 |
| chr5.4 | exon | 55289930 | 55289958 | 55289930 | ID=MS.gene88788.t1.exon3;Parent=MS.gene88788.t1 |
| chr5.4 | CDS | 55289930 | 55289958 | 55289930 | ID=cds.MS.gene88788.t1;Parent=MS.gene88788.t1 |
| chr5.4 | exon | 55289081 | 55289277 | 55289081 | ID=MS.gene88788.t1.exon4;Parent=MS.gene88788.t1 |
| chr5.4 | CDS | 55289081 | 55289277 | 55289081 | ID=cds.MS.gene88788.t1;Parent=MS.gene88788.t1 |
| chr5.4 | exon | 55288384 | 55288599 | 55288384 | ID=MS.gene88788.t1.exon5;Parent=MS.gene88788.t1 |
| chr5.4 | CDS | 55288384 | 55288599 | 55288384 | ID=cds.MS.gene88788.t1;Parent=MS.gene88788.t1 |
| chr5.4 | exon | 55287787 | 55287903 | 55287787 | ID=MS.gene88788.t1.exon6;Parent=MS.gene88788.t1 |
| chr5.4 | CDS | 55287787 | 55287903 | 55287787 | ID=cds.MS.gene88788.t1;Parent=MS.gene88788.t1 |
| chr5.4 | exon | 55287561 | 55287677 | 55287561 | ID=MS.gene88788.t1.exon7;Parent=MS.gene88788.t1 |
| chr5.4 | CDS | 55287561 | 55287677 | 55287561 | ID=cds.MS.gene88788.t1;Parent=MS.gene88788.t1 |
| chr5.4 | exon | 55287387 | 55287440 | 55287387 | ID=MS.gene88788.t1.exon8;Parent=MS.gene88788.t1 |
| chr5.4 | CDS | 55287387 | 55287440 | 55287387 | ID=cds.MS.gene88788.t1;Parent=MS.gene88788.t1 |
| chr5.4 | exon | 55287173 | 55287289 | 55287173 | ID=MS.gene88788.t1.exon9;Parent=MS.gene88788.t1 |
| chr5.4 | CDS | 55287173 | 55287289 | 55287173 | ID=cds.MS.gene88788.t1;Parent=MS.gene88788.t1 |
| chr5.4 | exon | 55286980 | 55287073 | 55286980 | ID=MS.gene88788.t1.exon10;Parent=MS.gene88788.t1 |
| chr5.4 | CDS | 55286980 | 55287073 | 55286980 | ID=cds.MS.gene88788.t1;Parent=MS.gene88788.t1 |
| chr5.4 | exon | 55286300 | 55286325 | 55286300 | ID=MS.gene88788.t1.exon11;Parent=MS.gene88788.t1 |
| chr5.4 | CDS | 55286300 | 55286325 | 55286300 | ID=cds.MS.gene88788.t1;Parent=MS.gene88788.t1 |
| Gene Sequence |
| Protein sequence |
