AlfalfaGEDB | MS.gene058236

M. sativa cultivar XinJiangDaYe / MS.gene058236

KEGG: K12121
GO: GO:0000155 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0006355 GO:0006464 GO:0006807 GO:0007165 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009584 GO:0009585 GO:0009605 GO:0009628 GO:0009881 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016301 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0017006 GO:0018298 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0036211 GO:0038023 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0060089 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140096 GO:0140299 GO:1901564 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00360.23 PF00512.28 PF00989.28 PF01590.29 PF02518.29 PF08446.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058236.t1	ACU21557.1	99.5	1098	6	0	2	1099	44	1141	0.00E+00	2173.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058236.t1	P34094	81.4	1107	195	3	1	1104	31	1129	0.0e+00	1839.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058236.t1	C7FHN7	99.5	1098	6	0	2	1099	44	1141	0.0e+00	2173.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049346	MS.gene058236	0.805998	1.02E-49	-1.69E-46
MS.gene049758	MS.gene058236	0.814859	1.24E-51	-1.69E-46
MS.gene053836	MS.gene058236	0.800225	1.59E-48	-1.69E-46
MS.gene054184	MS.gene058236	0.803603	3.22E-49	-1.69E-46
MS.gene054185	MS.gene058236	0.800999	1.11E-48	-1.69E-46
MS.gene054542	MS.gene058236	0.828219	1.02E-54	-1.69E-46
MS.gene057754	MS.gene058236	0.813311	2.73E-51	-1.69E-46
MS.gene058236	MS.gene06037	0.816293	5.96E-52	-1.69E-46
MS.gene058236	MS.gene061265	0.800752	1.24E-48	-1.69E-46
MS.gene058236	MS.gene062853	0.801432	9.03E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058236.t1	MTR_2g034040	98.735	1107	10	1	1	1103	44	1150	0.0	2271
MS.gene058236.t1	MTR_2g049520	56.549	1107	454	5	2	1104	29	1112	0.0	1340
MS.gene058236.t1	MTR_1g085160	53.201	1109	499	8	3	1099	68	1168	0.0	1173
MS.gene058236.t1	MTR_1g085160	53.201	1109	499	8	3	1099	21	1121	0.0	1171
MS.gene058236.t1	MTR_4g031150	24.790	238	152	7	862	1077	384	616	8.91e-12	70.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene058236.t1	AT2G18790	76.264	1108	247	6	1	1099	54	1154	1796
MS.gene058236.t1	AT4G16250	75.249	1103	259	5	3	1096	58	1155	1751
MS.gene058236.t1	AT2G18790	75.282	1064	242	7	1	1055	54	1105	1683
MS.gene058236.t1	AT4G18130	58.348	1102	424	11	2	1094	19	1094	1324
MS.gene058236.t1	AT1G09570	52.750	1109	505	7	3	1099	25	1126	1189
MS.gene058236.t1	AT1G09570	52.750	1109	505	7	3	1099	21	1122	1188
MS.gene058236.t1	AT1G09570	52.750	1109	505	7	3	1099	21	1122	1188
MS.gene058236.t1	AT1G09570	52.750	1109	505	7	3	1099	21	1122	1188
MS.gene058236.t1	AT1G09570	52.750	1109	505	7	3	1099	21	1122	1188
MS.gene058236.t1	AT5G35840	52.221	1103	502	12	6	1096	21	1110	1187

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Find 268 sgRNAs with CRISPR-Local

Find 517 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATCACCCAGAGGATA+AGG	0.460299	2.4:+56621716	MS.gene058236:CDS
AAAACCGCCACGTTGGATTT+TGG	0.185386	2.4:-56620317	None:intergenic
AAAATGAGGACATTTGGCCC+GGG	0.579089	2.4:+56622973	MS.gene058236:CDS
AAATGAGGACATTTGGCCCG+GGG	0.665807	2.4:+56622974	MS.gene058236:CDS
AACAGCAAATATGGGAGCAG+TGG	0.598223	2.4:-56621994	None:intergenic
AACATGGATGGTCAGATCAT+TGG	0.456366	2.4:+56623456	MS.gene058236:CDS
AACATGTCTTGAATCAATTC+AGG	0.412981	2.4:-56626147	None:intergenic
AACTACTATCCTGTTGTCTC+TGG	0.454992	2.4:-56623533	None:intergenic
AACTCACAAGCATACCTAAG+AGG	0.497763	2.4:-56621255	None:intergenic
AAGAAATTCTATGAGGCTTT+GGG	0.304318	2.4:+56621188	MS.gene058236:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCCAGTCTTAGTAAATG+TGG	+	chr2.4:56625134-56625153	MS.gene058236:intron	30.0%
AACATGTCTTGAATCAATTC+AGG	-	chr2.4:56626150-56626169	None:intergenic	30.0%
AAGAAATTCTATGAGGCTTT+GGG	+	chr2.4:56621188-56621207	MS.gene058236:CDS	30.0%
AATTTATATTCCACACTGAG+GGG	-	chr2.4:56625322-56625341	None:intergenic	30.0%
AGATAAGGGATATTATAGAG+TGG	+	chr2.4:56621511-56621530	MS.gene058236:CDS	30.0%
AGATGTAATTGGAAAACTGT+TGG	+	chr2.4:56623260-56623279	MS.gene058236:CDS	30.0%
ATACGGCAAAAGAGATTAAA+TGG	+	chr2.4:56621685-56621704	MS.gene058236:CDS	30.0%
ATATATTCTGATAGGGAAAG+AGG	+	chr2.4:56625872-56625891	MS.gene058236:intron	30.0%
ATTAATGGGAATGATGAAGA+TGG	+	chr2.4:56621144-56621163	MS.gene058236:CDS	30.0%
ATTAGCAAAGTATGGTAAAC+AGG	-	chr2.4:56624590-56624609	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	56620175	56626338	56620175	ID=MS.gene058236
chr2.4	mRNA	56620175	56626338	56620175	ID=MS.gene058236.t1;Parent=MS.gene058236
chr2.4	exon	56620175	56622170	56620175	ID=MS.gene058236.t1.exon1;Parent=MS.gene058236.t1
chr2.4	CDS	56620175	56622170	56620175	ID=cds.MS.gene058236.t1;Parent=MS.gene058236.t1
chr2.4	exon	56622947	56623754	56622947	ID=MS.gene058236.t1.exon2;Parent=MS.gene058236.t1
chr2.4	CDS	56622947	56623754	56622947	ID=cds.MS.gene058236.t1;Parent=MS.gene058236.t1
chr2.4	exon	56624736	56625029	56624736	ID=MS.gene058236.t1.exon3;Parent=MS.gene058236.t1
chr2.4	CDS	56624736	56625029	56624736	ID=cds.MS.gene058236.t1;Parent=MS.gene058236.t1
chr2.4	exon	56626119	56626338	56626119	ID=MS.gene058236.t1.exon4;Parent=MS.gene058236.t1
chr2.4	CDS	56626119	56626338	56626119	ID=cds.MS.gene058236.t1;Parent=MS.gene058236.t1

Gene Sequence

>MS.gene058236

ATGAAGAAAGCAATTGCACAATACACTGAAGACGCACGTCTCCACGCCGTTTTCGAACAATCCGGCGACTCTTTCGATTACTCTCAATCCATCCGTCTTACTACAGCATCCGTACCTGAACAACAGATCACTGCTTACTTGGCCAAAATCCAACGTGGCGGTTTTATTCAACCTTTTGGTTCAATGATCGCTGTTGATGAACCTTCTTTTCGCGTTCTCGCTTATAGCGAGAACGCACGTGATATGCTTGGTATTACACCTCAATCGGTACCTTCACTTGAGGACGATGATGAGTCATCGTCCTCAGGTTTTAATATAGGTACCGATGTGAGGTCACTTTTTACTCATTCTAGTGGTGTTTTACTTGAGAAAGCCTTCTCGGCTCGAGAGATTAGTCTTATGAATCCTATTTGGATTCATTCTAGATCTACTGGGAAGCCTTTTTATGGTATTCTTCATAGGATTGATGTTGGTGTTGTCATTGATTTGGAACCTGCAAGATCTGAGGATCCTGCTCTTTCCATTGCTGGCGCGGTACAGTCTCAGAAACTGGCTGTGCGCGCTATTTCTCAGCTTCAATCACTTCCTGGTGGTGATGTTAAGGTTCTTTGTGATGCTGTTGTTGAGAGTGTTAGAGAATTGACTGGTTATGATAGGGTTATGGTTTATAAGTTTCATGAGGATGAGCATGGGGAAGTTGTTGCTGAGAGTAAGAGGATTGATTTGGAGCCGTATATGGGTTTGCATTATCCTGCTACTGATATACCGCAGGCGTCGAGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTGGATTGTAATGCTTCTCCTGTTAGGGTTTTTCAGGATGAGGCACTTGTGCAGCCGGTTTGTTTGGTGGGGAGTACGCTTCGTGCTCCTCATGGTTGTCATGCTCAGTATATGGCGAATATGGGGTCGATTGCTTCGTTGGCTATGGCTGTTATTATTAATGGGAATGATGAAGATGGTGTTGGGATTGGTGGTACTGGAAGAAATTCTATGAGGCTTTGGGGTCTTGTTGTTTGTCATCATACTTCTGCTAGGTGTATTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAATGCAGGCTTTTGGGCTTCAGTTGAATATGGAGCTTCAGTTAGCCGCACAGTCGTTGGAGAAGCGGGTTTTGAGGACGCAGACTCTGTTGTGTGATATGTTGCTTAGGGATTCTCCTACTGGGATTGTTACTCAAAGTCCTAGTATCATGGACTTGGTTAAGTGTGATGGGGCTGCTTTGTTTTATCAGGGAAACTACTATCCGTTGGGTGTTACCCCGACAGAGTCTCAGATAAGGGATATTATAGAGTGGTTGTTGGCCTTTCACGGTGATTCGACGGGTTTGAGTACTGATAGTTTGGCTGATGCTGGTTATCCCGGGGCTGCTTCTCTTGGGGATGCGGTTTGTGGGATGGCTGTTGCGTATATCACTGAAAAGGATTTTCTTTTCTGGTTCAGATCGCATACGGCAAAAGAGATTAAATGGGGTGGTGCAAAACATCACCCAGAGGATAAGGATGATGGGCAGAGAATGCATCCTCGTTCTTCCTTCAAGGCCTTTTTAGAAGTGGTGAAGAGCCGTAGTATGCAGTGGGACAATGCAGAAATGGATGCAATTCACTCCTTGCAGCTTATCCTGCGAGACTCGTTTAAGGAAGCTGAGAATAACGATTCAAAGGCTGTTGTGCATACCCATATGGCAGAACTAGAGCTGCAAGGGGTGGATGAACTGAGTTCTGTGGCTAGAGAAATGGTTAGGTTGATAGAAACTGCCACTGCTCCCATATTTGCTGTTGATGTCAATGGCCGCATCAATGGGTGGAATGCAAAGGTTTCTGAATTGACGGGACTTCTGGTAGAGGACGCTATGGGGAAGTCTTTGCTTCATGATCTTGTGTATAAGGAGTCTCAAGAAATTGTAGACAAGCTTCTTTCTCATGCTTTGAAAGGTATTCTTTCTAAATTTATGGTTCCATGCCGATTCATTGGATTTATTTGTCAGAGAACTCCGATTAAACTATTATTAAGAAGATCATACTGTTCTTCCATGTCTTGTCGAGTCCTTCCTATTTGTAATTAACAAACATGATGGGTAGAGTTTAGAAGGTTTGATGAATACTTCGACTGTAATTAATATGCACACAGTCTACCTCAAAGCAATTTTTTTCTAATAAAATGAATGACGATTTTTCCGAATTCCGGACCACAAATGAATGCACAATCATGCTATGAATTGTCTAAGTCATAGTCATTGGTAATTCAGTAATGACTGAAATTTGGGCGTATGTTTCAACTGTGTAACCATGCCATGCTTATAAAAATGGAAAAGATAGAAGAAAATAAAATAAACACAATCGAATCCAGATGTCACGATGGTTGGGCTTTGTGGTCTGCACGGGTTGATTACGAGTATGTGGGAAGGTGGAAAATTGGGAATGTAAATCACCTTACACTTGTTCGGTATAACATATGTATGAGATGTTGGAAAATAAAATGAATATTTTCTCTTTGGACCCTAACTTCAGTTAAAAACCATTTTCACTTTCCTCCATCTTTGGCTTTCCTATTTTCCACCTACTCTCTATTCAAGCAGATTTAATGCCATTGAGCTTTGAAGTAAACTGCTACCTACTGCTATAGAATGTCTACTTTGGCTCTAGTAAAAAGTAAGATATTGGTAACTGATGGTACAACAATTGCATAACTTGAATTTAATTTAGTACAGGTGAAGAAGATAAGAATGTTGAGATAAAAATGAGGACATTTGGCCCGGGGAATCAAAATAAGGCAGTTTTTATAGTGGTGAATGCTTGCTCCAGCAAGGATTATACAAATAATATAGTTGGAGTGTGCTTTGTTGGTCAGGATGTTACTGGTCAAAAAGTTGTAATGGACAAATTCATTAACATACAAGGTGACTACAAGGCTATTGTACATAGTCCAAATGCATTGATCCCTCCCATTTTTGCATCGGATGATAACACATGTTGCTTAGAGTGGAACAATGCTATGGAAAAGCTCAGCGGTTGGAGCCGTACAGATGTAATTGGAAAACTGTTGGTGGGAGAAGTTTTTGGTAGTTTCTGTCAGTTGAAGGGTTCAGATGCTATGACAAAGTTCATGATTGTCTTGCACAATGCACTTGGTGGACAAGACACAGACAAATTTCCATTTTCATTTGTTGACAGGCATGGAAAGTATGTGCAGACTTTCTTGACTGCAAATAAGAGGGTTAACATGGATGGTCAGATCATTGGCGCTTTTTGCTTTTTGCAAATTGTGAGTCCTGAACTTCAACAGGCTCTAACAGTCCAGAGACAACAGGATAGTAGTTGCTTTGCTAGGATGAAAGAGTTAGCTTATATTTGTCAAGAAGTAAAGAATCCCTTGAGTGGCATACGCTTTACAAACTCTCTTCTGGAGTCTACATGCCTGACTGATGAACAAAAGCAGCTCCTTGAGACTAGTGCTGCTTGTGAGAAGCAAATGTTAAAGATAATACGGGACATTGATCTTGACAGCATCGATGACGGGTGAGTTTTCTAAGCAATCATTTAAAATATTTTGATTGTTCTAGAAGGCAATGTTAGAGTTATATAATTTGGCCATATAAATCCAGCATCATTCATGTGAAATCCTCCTAGGCTTGAAGCATGACGAACTACAGACTAACAATTCAAAGCTATGTTACACAACTCCAGATTTTAAAATAAATGGTACTTTCACATGGGATTAGAGTAGGAATAGGGTTGGACATTGTTGCCGCATAGTATGTAAAGCTGTGATTATTTCCAACACTAGATGTTTATGATTTGTTTGTCGGATATTCTTACACATATAGTGGAAGAATACCACATGACCTATTTGGTTTGAGAAATGTTTCCTGTTTCGAATTTTAGTTACACAAACTTTACCGTGTTTTAATCATGTATGTTTGATCTAATTAGTTCATTTGTAGATTTCTGTCCTTTTCATATCGTTCATCTAACTAAGTTTAAAGAATCACAGCTTATGATGTTTGTAAGAATTTGCCCTTATGCTATTATTATTATTATTATTCTCTTCTCCTCCCAAAGTGTGAAATTTACCTTATGCAGCAAACACAAGGTAGTTTATTTTAGAAGCTCTTTCTGACTGGCTTTGTCTGAATATCTGTTTATCAATGTTGTGAAGTTTTTCCTTGATTCGATAACAAACAGCAACATCTACCATATATTGATTATCCGTGGCTATCAAAATACCCGGTTTTACATGATTGATTGACAGCGATGTGAATAAATCTCATTTTACATACGTAGTTCCTTCTGGCTAGGATATGTAGGTTTTATGCATCATGTGAAGTGAATATCAAATATCAATTCTTTCCCTGTTTACCATACTTTGCTAATTGGCTGATCCTCTCATGTTTTGTGTCCTTTTCTATGTTATCTTCAGCGTGTACCCTTGCTTTAATGTCCTTCTAAACTTACTTAGAGGAAGACAAGATTCATGTATTTCTTTTCTTTTTTATTTAGGTCCCTGGCGCTTGAAAAGCGGGAATTCTTGCTCGAGAATGTCATAAATGCAGTTGTTAGCCAAGTAATGTTATTGCTAAGAGAAAGAAATTTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGACATTGGCTGTTTATGGTGATCAATTGAGGATTCAACAAGTCTTGGCAGATTTCTTAATGAATGTGGTGCGCTATGCACCATCTCCAGATGGTTGGGTAGAGATTCATGTATTTCCAAGAATAAAACAAATTTCAGATGGGCTCACTCTTCTGCATGCTGAATTTAGGTATGCAGGCATAACCTTCAAGTCATTTCCATTATTATTTTTCCTCAAATAAGTGGTGTACACTTAGATATGACAATTCCAGCCTATATAAGAACCTTGGGTTCAAATCCAGTCTTAGTAAATGTGGAAGGTGAGCGCTAGGATCACTCTCTTTCCAACACTCCCTGTCTTATTGGGCAAAATCAATGTGGGTCCAACACTTTGGAAATAAGTCCCACATAAAGTGGTGAGACCCACTTCGGTTTAATCCAGATGGAGAGTGAGTGTCGAAAAGAGAGAGTTCCTAGCACCCCTCAGTGTGGAATATAAATTATGACGGAGTACCCCAATCCAAATACTTGTTAACAATATAAATGCCCATCAAAACTTCTCTTCAACAATTACCAGTATGATCATGTGATATTTGAATATTTTAAACCTGTATGTATTGTTATCCTGAAATTTGCAGATTACTGGATAGAGCTTTTCTGTACTTTTAATCCTCTCTAGAAAAACCTTAAAAGAGTTGTTTTATTGACTTCCCTTTTGATCGCTTGACAAAATTCTTTCTTTCCAAATTGGAAATATATTCCAATTCTTGGATGTATATATTTTCACTTGTAATTAAGTGCCAAAATATGGGTGTTTTTCTATATATTCAACTCTCACTAAACAAACAAGTACTACTTTCAAATGGATACTGTTTCAGGGATTGTGTTTGTTGGTAATAGGACTCACTCCTAAGGGCAGAAGTTGTATAATATTAGTAAATTGTATTTAATATAATAATTAGTAACTGTTACATCTGCAGTAACTGCTATCTGCCGAACTTCCATGTAACTGCTAGGTAGTCAGAATTATAAATATATTCTGATAGGGAAAGAGGGGGCATTGGGTATTTTGTATGTGGGTTGGTTTGGGATAGACTAGGCTCTCTAATTCCTAGAGGTTGGTTACTTTTCTGCAGTTACTTTCCTGTATCAATAATAATACACGTGCATTCCCTTATTATTATGCAATAATCTCCCAAATACCCTAGAATTATCATTGGTATTTATTCATATTTGAACCATATCTAACAGTGTTTTATTTCCATTTTTTATTGTGAAGGATGGTGTGTCCTGGTGAAGGTCTTCCGCCTGAATTGATTCAAGACATGTTCCATAACAGTAAGTGGGTGACTCAAGAAGGTTTAGGGCTGAGCATGAGCAGGAAGATTATAAAGTTAATGAATGGTGAAGTCCAGTATGTCAGGGAGGCAGAACGGTGCTACTTCTTAGTTGTTCTTGAACTACCTGTGACGCGGAGAAGCTTAAAAAATGTTAATTAG

Protein sequence

>MS.gene058236.t1

MKKAIAQYTEDARLHAVFEQSGDSFDYSQSIRLTTASVPEQQITAYLAKIQRGGFIQPFGSMIAVDEPSFRVLAYSENARDMLGITPQSVPSLEDDDESSSSGFNIGTDVRSLFTHSSGVLLEKAFSAREISLMNPIWIHSRSTGKPFYGILHRIDVGVVIDLEPARSEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKVLCDAVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRIDLEPYMGLHYPATDIPQASRFLFKQNRVRMIVDCNASPVRVFQDEALVQPVCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDEDGVGIGGTGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALFYQGNYYPLGVTPTESQIRDIIEWLLAFHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSMQWDNAEMDAIHSLQLILRDSFKEAENNDSKAVVHTHMAELELQGVDELSSVAREMVRLIETATAPIFAVDVNGRINGWNAKVSELTGLLVEDAMGKSLLHDLVYKESQEIVDKLLSHALKGEEDKNVEIKMRTFGPGNQNKAVFIVVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNALIPPIFASDDNTCCLEWNNAMEKLSGWSRTDVIGKLLVGEVFGSFCQLKGSDAMTKFMIVLHNALGGQDTDKFPFSFVDRHGKYVQTFLTANKRVNMDGQIIGAFCFLQIVSPELQQALTVQRQQDSSCFARMKELAYICQEVKNPLSGIRFTNSLLESTCLTDEQKQLLETSAACEKQMLKIIRDIDLDSIDDGSLALEKREFLLENVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLADFLMNVVRYAPSPDGWVEIHVFPRIKQISDGLTLLHAEFRMVCPGEGLPPELIQDMFHNSKWVTQEGLGLSMSRKIIKLMNGEVQYVREAERCYFLVVLELPVTRRSLKNVN