Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89750.t1 | XP_013441999.1 | 97.3 | 297 | 8 | 0 | 1 | 297 | 20 | 316 | 1.00E-166 | 595.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89750.t1 | P26690 | 63.3 | 297 | 105 | 4 | 1 | 296 | 21 | 314 | 1.3e-104 | 380.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89750.t1 | A0A072TEP5 | 97.3 | 297 | 8 | 0 | 1 | 297 | 20 | 316 | 7.5e-167 | 595.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053330 | MS.gene89750 | 0.808472 | 3.05E-50 | -1.69E-46 |
| MS.gene054102 | MS.gene89750 | 0.812512 | 4.08E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene89750 | MS.gene97980 | PPI |
| MS.gene89750 | MS.gene062932 | PPI |
| MS.gene89750 | MS.gene008793 | PPI |
| MS.gene62620 | MS.gene89750 | PPI |
| MS.gene056488 | MS.gene89750 | PPI |
| MS.gene89750 | MS.gene024362 | PPI |
| MS.gene89750 | MS.gene91446 | PPI |
| MS.gene89750 | MS.gene008794 | PPI |
| MS.gene97981 | MS.gene89750 | PPI |
| MS.gene89750 | MS.gene95889 | PPI |
| MS.gene54933 | MS.gene89750 | PPI |
| MS.gene89750 | MS.gene98697 | PPI |
| MS.gene93059 | MS.gene89750 | PPI |
| MS.gene89750 | MS.gene53169 | PPI |
| MS.gene72560 | MS.gene89750 | PPI |
| MS.gene89750 | MS.gene93058 | PPI |
| MS.gene040151 | MS.gene89750 | PPI |
| MS.gene89750 | MS.gene55382 | PPI |
| MS.gene89750 | MS.gene93783 | PPI |
| MS.gene50700 | MS.gene89750 | PPI |
| MS.gene23359 | MS.gene89750 | PPI |
| MS.gene89750 | MS.gene056487 | PPI |
| MS.gene89750 | MS.gene99693 | PPI |
| MS.gene003638 | MS.gene89750 | PPI |
| MS.gene89750 | MS.gene42146 | PPI |
| MS.gene89750 | MS.gene42873 | PPI |
| MS.gene89750 | MS.gene87111 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89750.t1 | MTR_0374s0050 | 97.306 | 297 | 8 | 0 | 1 | 297 | 20 | 316 | 0.0 | 602 |
| MS.gene89750.t1 | MTR_3g083130 | 63.300 | 297 | 106 | 3 | 1 | 296 | 21 | 315 | 5.75e-136 | 387 |
| MS.gene89750.t1 | MTR_5g097900 | 64.336 | 286 | 99 | 3 | 1 | 286 | 20 | 302 | 6.01e-124 | 357 |
| MS.gene89750.t1 | MTR_5g097910 | 64.336 | 286 | 99 | 3 | 1 | 286 | 20 | 302 | 8.71e-124 | 356 |
| MS.gene89750.t1 | MTR_5g097940 | 64.336 | 286 | 99 | 3 | 1 | 286 | 20 | 302 | 8.71e-124 | 356 |
| MS.gene89750.t1 | MTR_4g072320 | 53.443 | 305 | 128 | 2 | 1 | 297 | 17 | 315 | 1.22e-112 | 328 |
| MS.gene89750.t1 | MTR_4g072350 | 52.632 | 304 | 136 | 1 | 1 | 296 | 17 | 320 | 1.97e-111 | 325 |
| MS.gene89750.t1 | MTR_6g073110 | 52.980 | 302 | 134 | 1 | 1 | 294 | 17 | 318 | 1.06e-110 | 323 |
| MS.gene89750.t1 | MTR_4g072360 | 50.820 | 305 | 142 | 1 | 1 | 297 | 17 | 321 | 1.51e-107 | 315 |
| MS.gene89750.t1 | MTR_4g036845 | 42.810 | 306 | 160 | 6 | 1 | 296 | 14 | 314 | 9.46e-85 | 257 |
| MS.gene89750.t1 | MTR_8g070095 | 40.391 | 307 | 168 | 5 | 1 | 296 | 16 | 318 | 9.74e-76 | 234 |
| MS.gene89750.t1 | MTR_7g063580 | 43.321 | 277 | 140 | 5 | 31 | 296 | 83 | 353 | 6.19e-72 | 226 |
| MS.gene89750.t1 | MTR_8g070115 | 39.672 | 305 | 169 | 4 | 1 | 296 | 16 | 314 | 1.02e-71 | 224 |
| MS.gene89750.t1 | MTR_4g021350 | 41.967 | 305 | 160 | 7 | 1 | 296 | 16 | 312 | 4.03e-67 | 212 |
| MS.gene89750.t1 | MTR_4g021350 | 42.652 | 279 | 152 | 5 | 1 | 279 | 16 | 286 | 6.13e-66 | 208 |
| MS.gene89750.t1 | MTR_7g070500 | 38.436 | 307 | 169 | 6 | 1 | 296 | 23 | 320 | 2.81e-61 | 197 |
| MS.gene89750.t1 | MTR_7g070500 | 39.855 | 276 | 157 | 4 | 1 | 276 | 23 | 289 | 4.99e-60 | 193 |
| MS.gene89750.t1 | MTR_4g021410 | 41.825 | 263 | 139 | 4 | 22 | 284 | 35 | 283 | 5.65e-60 | 193 |
| MS.gene89750.t1 | MTR_4g021410 | 41.860 | 258 | 136 | 4 | 27 | 284 | 3 | 246 | 3.60e-59 | 190 |
| MS.gene89750.t1 | MTR_4g021450 | 39.789 | 284 | 148 | 5 | 22 | 296 | 35 | 304 | 2.35e-57 | 187 |
| MS.gene89750.t1 | MTR_4g072060 | 37.248 | 298 | 171 | 6 | 1 | 288 | 11 | 302 | 1.83e-56 | 184 |
| MS.gene89750.t1 | MTR_4g021410 | 42.273 | 220 | 114 | 3 | 65 | 284 | 1 | 207 | 3.02e-47 | 158 |
| MS.gene89750.t1 | MTR_4g021450 | 40.249 | 241 | 122 | 4 | 65 | 296 | 1 | 228 | 1.93e-45 | 154 |
| MS.gene89750.t1 | MTR_4g021450 | 39.674 | 184 | 98 | 3 | 122 | 296 | 6 | 185 | 1.68e-38 | 134 |
| MS.gene89750.t1 | MTR_6g072650 | 46.309 | 149 | 50 | 2 | 156 | 296 | 10 | 136 | 1.74e-37 | 130 |
| MS.gene89750.t1 | MTR_6g072710 | 52.336 | 107 | 51 | 0 | 174 | 280 | 1 | 107 | 1.59e-32 | 116 |
| MS.gene89750.t1 | MTR_3g449790 | 25.249 | 301 | 162 | 9 | 26 | 290 | 83 | 356 | 4.18e-17 | 80.9 |
| MS.gene89750.t1 | MTR_3g449790 | 25.249 | 301 | 168 | 10 | 26 | 290 | 83 | 362 | 4.15e-16 | 78.2 |
| MS.gene89750.t1 | MTR_3g092140 | 24.567 | 289 | 165 | 9 | 26 | 278 | 79 | 350 | 3.24e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89750.t1 | AT1G59960 | 53.115 | 305 | 134 | 2 | 1 | 296 | 21 | 325 | 1.71e-120 | 348 |
| MS.gene89750.t1 | AT1G59950 | 55.082 | 305 | 128 | 2 | 1 | 296 | 15 | 319 | 9.35e-117 | 339 |
| MS.gene89750.t1 | AT5G62420 | 44.771 | 306 | 155 | 5 | 1 | 296 | 14 | 315 | 1.86e-85 | 259 |
| MS.gene89750.t1 | AT2G37790 | 41.776 | 304 | 163 | 4 | 1 | 296 | 16 | 313 | 3.13e-79 | 243 |
| MS.gene89750.t1 | AT2G37770 | 43.662 | 284 | 148 | 3 | 22 | 296 | 34 | 314 | 1.17e-78 | 241 |
| MS.gene89750.t1 | AT2G37760 | 41.311 | 305 | 160 | 4 | 1 | 296 | 16 | 310 | 2.08e-75 | 233 |
| MS.gene89750.t1 | AT2G37760 | 41.311 | 305 | 160 | 4 | 1 | 296 | 16 | 310 | 2.08e-75 | 233 |
| MS.gene89750.t1 | AT2G37760 | 42.857 | 280 | 150 | 3 | 1 | 280 | 16 | 285 | 2.80e-75 | 232 |
| MS.gene89750.t1 | AT2G37760 | 42.705 | 281 | 151 | 3 | 1 | 281 | 16 | 286 | 2.89e-75 | 232 |
| MS.gene89750.t1 | AT2G37760 | 42.705 | 281 | 151 | 3 | 1 | 281 | 16 | 286 | 2.89e-75 | 232 |
| MS.gene89750.t1 | AT3G53880 | 41.367 | 278 | 151 | 3 | 28 | 296 | 40 | 314 | 1.81e-73 | 228 |
| MS.gene89750.t1 | AT3G53880 | 42.460 | 252 | 142 | 2 | 28 | 279 | 40 | 288 | 8.39e-71 | 221 |
| MS.gene89750.t1 | AT5G01670 | 37.785 | 307 | 171 | 6 | 1 | 296 | 24 | 321 | 2.85e-69 | 218 |
| MS.gene89750.t1 | AT5G01670 | 34.731 | 334 | 171 | 7 | 1 | 296 | 24 | 348 | 2.73e-63 | 203 |
| MS.gene89750.t1 | AT2G37760 | 43.033 | 244 | 128 | 2 | 62 | 296 | 23 | 264 | 2.58e-62 | 198 |
| MS.gene89750.t1 | AT2G37760 | 43.033 | 244 | 128 | 2 | 62 | 296 | 23 | 264 | 2.58e-62 | 198 |
| MS.gene89750.t1 | AT2G21250 | 34.564 | 298 | 179 | 6 | 1 | 288 | 11 | 302 | 1.21e-59 | 192 |
| MS.gene89750.t1 | AT2G21260 | 35.764 | 288 | 169 | 7 | 1 | 278 | 11 | 292 | 2.89e-59 | 192 |
| MS.gene89750.t1 | AT2G37770 | 46.552 | 174 | 90 | 2 | 22 | 195 | 34 | 204 | 1.90e-49 | 166 |
| MS.gene89750.t1 | AT2G21250 | 35.371 | 229 | 132 | 6 | 1 | 219 | 11 | 233 | 3.46e-43 | 148 |
| MS.gene89750.t1 | AT2G21260 | 32.877 | 219 | 135 | 5 | 70 | 278 | 8 | 224 | 2.91e-40 | 140 |
| MS.gene89750.t1 | AT1G06690 | 28.896 | 308 | 162 | 11 | 19 | 290 | 87 | 373 | 5.03e-24 | 100 |
| MS.gene89750.t1 | AT5G53580 | 24.221 | 289 | 158 | 12 | 26 | 274 | 80 | 347 | 4.41e-13 | 69.3 |
Find 73 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCATGAAATTAGAATATT+TGG | 0.170879 | 1.3:-35246492 | MS.gene89750:CDS |
| GCTCTTCAACTTGGTCTAAT+TGG | 0.184953 | 1.3:-35247932 | MS.gene89750:CDS |
| TCAGTGTGAAGCCGGGAAAT+TGG | 0.256916 | 1.3:-35246445 | MS.gene89750:CDS |
| ATTGTTAGTAACCCAAAGTT+TGG | 0.290485 | 1.3:+35247883 | None:intergenic |
| TTGTGTTCATTCCTAACCTT+TGG | 0.306436 | 1.3:-35245421 | MS.gene89750:CDS |
| TTTGACACTGCATCAATATA+TGG | 0.316665 | 1.3:-35247989 | MS.gene89750:CDS |
| ATGGAAGAATGCCAGAAATT+AGG | 0.335714 | 1.3:-35246362 | MS.gene89750:CDS |
| GTCCAAATATTCTAATTTCA+TGG | 0.352675 | 1.3:+35246490 | None:intergenic |
| ACTACCCCAACTGGCCCCTT+TGG | 0.355628 | 1.3:+35245908 | None:intergenic |
| CTTTATCACCTCCAAACTTT+GGG | 0.360927 | 1.3:-35247894 | MS.gene89750:CDS |
| ATAACCGCTTTCTCTCCTTT+AGG | 0.371890 | 1.3:-35245933 | MS.gene89750:CDS |
| CAGTGTGAAGCCGGGAAATT+GGG | 0.376439 | 1.3:-35246444 | MS.gene89750:CDS |
| AGCTTCTTCTGATGCCAAAC+TGG | 0.376503 | 1.3:+35245987 | None:intergenic |
| TGTGTTCATTCCTAACCTTT+GGG | 0.382649 | 1.3:-35245420 | MS.gene89750:CDS |
| AGGAGCCAAAGGGGCCAGTT+GGG | 0.383611 | 1.3:-35245913 | MS.gene89750:CDS |
| GTAATTGAAGCTATCAAATC+AGG | 0.391570 | 1.3:-35248022 | MS.gene89750:CDS |
| TCTTTATCACCTCCAAACTT+TGG | 0.397007 | 1.3:-35247895 | MS.gene89750:CDS |
| GTTTCCCCATCCCAAAGGTT+AGG | 0.400915 | 1.3:+35245410 | None:intergenic |
| ATTTGCTATCATTCCTCCTT+CGG | 0.405885 | 1.3:-35246279 | MS.gene89750:CDS |
| TACGGCAATTCCCAATTTCC+CGG | 0.409708 | 1.3:+35246434 | None:intergenic |
| TATGGCTCAGAAGAGGCTTT+AGG | 0.410339 | 1.3:-35247971 | MS.gene89750:CDS |
| AAAACTTGGAAATATTTGAT+TGG | 0.411973 | 1.3:-35245511 | MS.gene89750:CDS |
| TTAGGCCTTGCAAAATCTAT+AGG | 0.418202 | 1.3:-35246344 | MS.gene89750:CDS |
| TGGACCTTTATTTGATCCAC+TGG | 0.428214 | 1.3:-35246472 | MS.gene89750:CDS |
| TTCATTCCTAACCTTTGGGA+TGG | 0.431912 | 1.3:-35245416 | MS.gene89750:CDS |
| AACTTCATTACTACCCCAAC+TGG | 0.445320 | 1.3:+35245899 | None:intergenic |
| TTTCCCGGCTTCACACTGAT+TGG | 0.447551 | 1.3:+35246449 | None:intergenic |
| GTATGAGCAAGGGGTGACTA+TGG | 0.448857 | 1.3:-35245567 | MS.gene89750:CDS |
| TTCTCTCCTTTAGGAGCCAA+AGG | 0.450688 | 1.3:-35245924 | MS.gene89750:CDS |
| GTTATTAATTCTTCAGCATA+CGG | 0.462926 | 1.3:+35246416 | None:intergenic |
| CTGGCCAATCAGTGTGAAGC+CGG | 0.465201 | 1.3:-35246453 | MS.gene89750:CDS |
| TTGGGGTAGTAATGAAGTTA+TGG | 0.468928 | 1.3:-35245895 | MS.gene89750:CDS |
| CATTCCTAACCTTTGGGATG+GGG | 0.471590 | 1.3:-35245414 | MS.gene89750:CDS |
| AACATGCCAGTGATAGCATT+TGG | 0.478930 | 1.3:-35248091 | MS.gene89750:CDS |
| TCTCTCCTTTAGGAGCCAAA+GGG | 0.478990 | 1.3:-35245923 | MS.gene89750:CDS |
| AACAGATTCGTGTCAACAAT+GGG | 0.479432 | 1.3:-35245448 | MS.gene89750:CDS |
| TGGAGTGATTTCTGAAGAGC+AGG | 0.480636 | 1.3:+35247842 | None:intergenic |
| AGGTTAGGAATGAACACAAC+TGG | 0.482133 | 1.3:+35245425 | None:intergenic |
| AAAAGAATACTGTGAATCAA+AGG | 0.482547 | 1.3:-35245964 | MS.gene89750:CDS |
| GGAGAGAATGAAGCAAAACT+TGG | 0.486339 | 1.3:-35245525 | MS.gene89750:CDS |
| TAGGAGCCAAAGGGGCCAGT+TGG | 0.490078 | 1.3:-35245914 | MS.gene89750:CDS |
| TGTTATAGGTATGTCTTAGA+TGG | 0.498955 | 1.3:-35245592 | MS.gene89750:intron |
| TCATTCCTAACCTTTGGGAT+GGG | 0.502283 | 1.3:-35245415 | MS.gene89750:CDS |
| AGGTGGAGATGAATCCAGTT+TGG | 0.508462 | 1.3:-35246001 | MS.gene89750:CDS |
| TTGGCCAGTGGATCAAATAA+AGG | 0.518534 | 1.3:+35246468 | None:intergenic |
| CTTACTTGATTGACCGAAGG+AGG | 0.519682 | 1.3:+35246266 | None:intergenic |
| CTGGCCCCTTTGGCTCCTAA+AGG | 0.523489 | 1.3:+35245918 | None:intergenic |
| GTTAGTAACCCAAAGTTTGG+AGG | 0.526167 | 1.3:+35247886 | None:intergenic |
| AAAGAATACTGTGAATCAAA+GGG | 0.530667 | 1.3:-35245963 | MS.gene89750:CDS |
| GGAGCCAAAGGGGCCAGTTG+GGG | 0.542781 | 1.3:-35245912 | MS.gene89750:CDS |
| AAACAGATTCGTGTCAACAA+TGG | 0.549643 | 1.3:-35245449 | MS.gene89750:CDS |
| GCCGTACCAAATGCTATCAC+TGG | 0.552904 | 1.3:+35248085 | None:intergenic |
| CTTAGATGGTTGTATGAGCA+AGG | 0.553980 | 1.3:-35245578 | MS.gene89750:CDS |
| TGGCCAATCAGTGTGAAGCC+GGG | 0.555485 | 1.3:-35246452 | MS.gene89750:CDS |
| ATAGAAGAAGCTCTTCAACT+TGG | 0.557954 | 1.3:-35247941 | MS.gene89750:CDS |
| ATAACCACATTTGATCTGAA+AGG | 0.559708 | 1.3:-35246398 | MS.gene89750:CDS |
| CACTCCTTTCAGATCAAATG+TGG | 0.582449 | 1.3:+35246394 | None:intergenic |
| GAAAGGAGTGTGGACAGCAA+TGG | 0.582486 | 1.3:-35246381 | MS.gene89750:CDS |
| GCCAGTGATAGCATTTGGTA+CGG | 0.589659 | 1.3:-35248086 | MS.gene89750:CDS |
| TGGCTTACTTGATTGACCGA+AGG | 0.592154 | 1.3:+35246263 | None:intergenic |
| CTTAAGTTTCCCCATCCCAA+AGG | 0.597848 | 1.3:+35245405 | None:intergenic |
| AAGCAAATTGCAGAGGAACA+TGG | 0.600046 | 1.3:-35245858 | MS.gene89750:CDS |
| ATCAATATATGGCTCAGAAG+AGG | 0.615079 | 1.3:-35247978 | MS.gene89750:CDS |
| GGCTCCTAAAGGAGAGAAAG+CGG | 0.617316 | 1.3:+35245929 | None:intergenic |
| AGAGCAGGAAGAACAAGATG+AGG | 0.626023 | 1.3:+35247857 | None:intergenic |
| TAGATGGTTGTATGAGCAAG+GGG | 0.628862 | 1.3:-35245576 | MS.gene89750:CDS |
| TTAGATGGTTGTATGAGCAA+GGG | 0.638177 | 1.3:-35245577 | MS.gene89750:CDS |
| CTCTCCTTTAGGAGCCAAAG+GGG | 0.646505 | 1.3:-35245922 | MS.gene89750:CDS |
| GCTTCACACTGATTGGCCAG+TGG | 0.662823 | 1.3:+35246456 | None:intergenic |
| GGCTGTGAAGAGCTACAACA+AGG | 0.663022 | 1.3:-35245546 | MS.gene89750:CDS |
| CATTTGATCTGAAAGGAGTG+TGG | 0.668530 | 1.3:-35246391 | MS.gene89750:CDS |
| AATACTCAAGCAAATTGCAG+AGG | 0.683311 | 1.3:-35245865 | MS.gene89750:CDS |
| GCAGCTGTAACAAACAACGA+TGG | 0.714604 | 1.3:-35248064 | MS.gene89750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTATCAGATATTTAT+AGG | + | chr1.3:35246488-35246507 | None:intergenic | 10.0% |
| !!! | AAAAACATAACTTTTAAGTA+TGG | - | chr1.3:35246339-35246358 | MS.gene89750:CDS | 15.0% |
| !!! | AAAAATGAAAACCATATTTT+TGG | + | chr1.3:35245859-35245878 | None:intergenic | 15.0% |
| !!! | AGAATTATTTGTATGATTTT+TGG | + | chr1.3:35245790-35245809 | None:intergenic | 15.0% |
| !! | AAAACTTGGAAATATTTGAT+TGG | - | chr1.3:35247983-35248002 | MS.gene89750:CDS | 20.0% |
| !! | AATTACAAAGTGATATTACA+TGG | + | chr1.3:35247364-35247383 | None:intergenic | 20.0% |
| !! | AGAATTATCATTATTCAAAG+TGG | - | chr1.3:35245909-35245928 | MS.gene89750:CDS | 20.0% |
| !! | ATGATTATTCAACTATTTGA+TGG | - | chr1.3:35247858-35247877 | MS.gene89750:CDS | 20.0% |
| !!! | ACAACTATTATTTTTTGAAG+TGG | + | chr1.3:35246146-35246165 | None:intergenic | 20.0% |
| !!! | CTTAAAAGTTATGTTTTTTG+TGG | + | chr1.3:35246337-35246356 | None:intergenic | 20.0% |
| !!! | TAATAGTTCTAAATTGAAAG+AGG | + | chr1.3:35245694-35245713 | None:intergenic | 20.0% |
| !!! | TTATTCAAGTTTATTAGCTA+GGG | - | chr1.3:35247832-35247851 | MS.gene89750:intron | 20.0% |
| !!! | TTTATTCAAGTTTATTAGCT+AGG | - | chr1.3:35247831-35247850 | MS.gene89750:intron | 20.0% |
| ! | AAAAGAATACTGTGAATCAA+AGG | - | chr1.3:35247530-35247549 | MS.gene89750:intron | 25.0% |
| ! | AAAGAATACTGTGAATCAAA+GGG | - | chr1.3:35247531-35247550 | MS.gene89750:intron | 25.0% |
| ! | AAATTGTGATCTTTGTATCT+GGG | + | chr1.3:35246076-35246095 | None:intergenic | 25.0% |
| ! | AGAAAATGTATAGTTACCAT+AGG | - | chr1.3:35246180-35246199 | MS.gene89750:intron | 25.0% |
| ! | ATATTAATGCCACCAAATAT+AGG | - | chr1.3:35247473-35247492 | MS.gene89750:intron | 25.0% |
| ! | CAAAAATGCTGAATTCTAAT+TGG | - | chr1.3:35247402-35247421 | MS.gene89750:intron | 25.0% |
| ! | GACCATGAAATTAGAATATT+TGG | - | chr1.3:35247002-35247021 | MS.gene89750:intron | 25.0% |
| ! | GGAGTTAATATAATTCTTTG+TGG | - | chr1.3:35247879-35247898 | MS.gene89750:CDS | 25.0% |
| ! | GTCCAAATATTCTAATTTCA+TGG | + | chr1.3:35247007-35247026 | None:intergenic | 25.0% |
| ! | GTTATTAATTCTTCAGCATA+CGG | + | chr1.3:35247081-35247100 | None:intergenic | 25.0% |
| ! | TAACTGATAGAAACTCAAAA+TGG | + | chr1.3:35247682-35247701 | None:intergenic | 25.0% |
| ! | TAAGATACTTCAATACTTTG+CGG | + | chr1.3:35246572-35246591 | None:intergenic | 25.0% |
| ! | TAAGTATCATTGTGTATATG+TGG | - | chr1.3:35246457-35246476 | MS.gene89750:CDS | 25.0% |
| ! | TATGTTTAAGAGCTTGATAA+AGG | - | chr1.3:35246757-35246776 | MS.gene89750:intron | 25.0% |
| ! | TCAAATTTGCATCATAAAGT+TGG | - | chr1.3:35245739-35245758 | MS.gene89750:intron | 25.0% |
| ! | TGCAATCATTATTTGTTTGT+TGG | + | chr1.3:35246866-35246885 | None:intergenic | 25.0% |
| !! | TAACCTAGAAAAGATTTTAG+CGG | + | chr1.3:35246417-35246436 | None:intergenic | 25.0% |
| !! | TCTTTTCTAGGTTACATATA+TGG | - | chr1.3:35246423-35246442 | MS.gene89750:CDS | 25.0% |
| !! | TTCTTTTGTCTCCAAAAATA+TGG | - | chr1.3:35245845-35245864 | MS.gene89750:CDS | 25.0% |
| !!! | ATAATTCTTTGTGGTGTTAT+AGG | - | chr1.3:35247888-35247907 | MS.gene89750:CDS | 25.0% |
| !!! | GTATGATTTTTGGATTAGAA+TGG | + | chr1.3:35245780-35245799 | None:intergenic | 25.0% |
| AAGTGATGAAGTATGAGAAA+TGG | + | chr1.3:35247452-35247471 | None:intergenic | 30.0% | |
| AGTATCTAGACTTCATATCA+TGG | - | chr1.3:35246650-35246669 | MS.gene89750:intron | 30.0% | |
| ATAAATCACAGATCAAAGAG+AGG | - | chr1.3:35246712-35246731 | MS.gene89750:intron | 30.0% | |
| ATAACCACATTTGATCTGAA+AGG | - | chr1.3:35247096-35247115 | MS.gene89750:intron | 30.0% | |
| ATGAAGTGCATTATTTCCTA+TGG | + | chr1.3:35246199-35246218 | None:intergenic | 30.0% | |
| ATTGTTAGTAACCCAAAGTT+TGG | + | chr1.3:35245614-35245633 | None:intergenic | 30.0% | |
| CAAATAGCATCAAAACAACA+TGG | - | chr1.3:35246946-35246965 | MS.gene89750:intron | 30.0% | |
| GAAATTGTGATCTTTGTATC+TGG | + | chr1.3:35246077-35246096 | None:intergenic | 30.0% | |
| GTAATTGAAGCTATCAAATC+AGG | - | chr1.3:35245472-35245491 | MS.gene89750:CDS | 30.0% | |
| TAAATCACAGATCAAAGAGA+GGG | - | chr1.3:35246713-35246732 | MS.gene89750:intron | 30.0% | |
| TAGTTATAAGGGTAGTTACA+AGG | - | chr1.3:35246012-35246031 | MS.gene89750:intron | 30.0% | |
| TGTTATAGGTATGTCTTAGA+TGG | - | chr1.3:35247902-35247921 | MS.gene89750:CDS | 30.0% | |
| TTGGGTGACATTAGTTATAA+GGG | - | chr1.3:35246001-35246020 | MS.gene89750:CDS | 30.0% | |
| TTGTGCATGAAATACTCAAT+TGG | + | chr1.3:35247733-35247752 | None:intergenic | 30.0% | |
| TTTGACACTGCATCAATATA+TGG | - | chr1.3:35245505-35245524 | MS.gene89750:CDS | 30.0% | |
| ! | TACCCTATAACTTTAAAGGA+TGG | + | chr1.3:35245977-35245996 | None:intergenic | 30.0% |
| !! | ACTCCATCCTTTAAAGTTAT+AGG | - | chr1.3:35245971-35245990 | MS.gene89750:CDS | 30.0% |
| !! | CTAGTCTTGTAGTTTAATGT+CGG | - | chr1.3:35247292-35247311 | MS.gene89750:intron | 30.0% |
| !! | CTCCATCCTTTAAAGTTATA+GGG | - | chr1.3:35245972-35245991 | MS.gene89750:CDS | 30.0% |
| !! | GGTCTAAAATAGTTTTACAG+CGG | - | chr1.3:35247313-35247332 | MS.gene89750:intron | 30.0% |
| !! | TTATTTGTTTGTTGGTTCTC+TGG | + | chr1.3:35246858-35246877 | None:intergenic | 30.0% |
| !!! | CATGTTGTTTTGATGCTATT+TGG | + | chr1.3:35246948-35246967 | None:intergenic | 30.0% |
| AAACAGATTCGTGTCAACAA+TGG | - | chr1.3:35248045-35248064 | MS.gene89750:CDS | 35.0% | |
| AAAGTTATAGGGTAGCACTT+GGG | - | chr1.3:35245983-35246002 | MS.gene89750:CDS | 35.0% | |
| AACAGATTCGTGTCAACAAT+GGG | - | chr1.3:35248046-35248065 | MS.gene89750:CDS | 35.0% | |
| AAGTCTAGATACTCCAAACA+TGG | + | chr1.3:35246643-35246662 | None:intergenic | 35.0% | |
| AATACTCAAGCAAATTGCAG+AGG | - | chr1.3:35247629-35247648 | MS.gene89750:intron | 35.0% | |
| AATTTCATGGTCCTGCAATA+TGG | + | chr1.3:35246994-35247013 | None:intergenic | 35.0% | |
| ACAAGACTAGTGAAAGAGAA+AGG | + | chr1.3:35247282-35247301 | None:intergenic | 35.0% | |
| ACATGGCAAAAATATTGCTC+AGG | - | chr1.3:35247653-35247672 | MS.gene89750:intron | 35.0% | |
| AGTGACATAGATGAGCTTAT+TGG | + | chr1.3:35247254-35247273 | None:intergenic | 35.0% | |
| ATAGAAGAAGCTCTTCAACT+TGG | - | chr1.3:35245553-35245572 | MS.gene89750:CDS | 35.0% | |
| ATCAATATATGGCTCAGAAG+AGG | - | chr1.3:35245516-35245535 | MS.gene89750:CDS | 35.0% | |
| ATGCACTTCATTCTTCAGTT+TGG | - | chr1.3:35246208-35246227 | MS.gene89750:intron | 35.0% | |
| ATGGAAGAATGCCAGAAATT+AGG | - | chr1.3:35247132-35247151 | MS.gene89750:intron | 35.0% | |
| CTTGGGTGACATTAGTTATA+AGG | - | chr1.3:35246000-35246019 | MS.gene89750:CDS | 35.0% | |
| CTTTATCACCTCCAAACTTT+GGG | - | chr1.3:35245600-35245619 | MS.gene89750:intron | 35.0% | |
| GATTCATCTCCACCTATATT+TGG | + | chr1.3:35247488-35247507 | None:intergenic | 35.0% | |
| GCAAAATACACACGAAGTAT+CGG | + | chr1.3:35246536-35246555 | None:intergenic | 35.0% | |
| GTGCTACCCTATAACTTTAA+AGG | + | chr1.3:35245981-35246000 | None:intergenic | 35.0% | |
| TAAAGTTATAGGGTAGCACT+TGG | - | chr1.3:35245982-35246001 | MS.gene89750:CDS | 35.0% | |
| TCAAAACAACATGGAGCATA+AGG | - | chr1.3:35246955-35246974 | MS.gene89750:intron | 35.0% | |
| TCTTTATCACCTCCAAACTT+TGG | - | chr1.3:35245599-35245618 | MS.gene89750:intron | 35.0% | |
| TGAAATTGATGCCATATTGC+AGG | - | chr1.3:35246980-35246999 | MS.gene89750:intron | 35.0% | |
| TGTGTTCATTCCTAACCTTT+GGG | - | chr1.3:35248074-35248093 | MS.gene89750:CDS | 35.0% | |
| TTAATGCCACCAAATATAGG+TGG | - | chr1.3:35247476-35247495 | MS.gene89750:intron | 35.0% | |
| TTAGATGGTTGTATGAGCAA+GGG | - | chr1.3:35247917-35247936 | MS.gene89750:CDS | 35.0% | |
| TTAGGCCTTGCAAAATCTAT+AGG | - | chr1.3:35247150-35247169 | MS.gene89750:intron | 35.0% | |
| TTGGGGTAGTAATGAAGTTA+TGG | - | chr1.3:35247599-35247618 | MS.gene89750:intron | 35.0% | |
| TTGTGTTCATTCCTAACCTT+TGG | - | chr1.3:35248073-35248092 | MS.gene89750:CDS | 35.0% | |
| ! | ATTTTGCAAGGCCTAATTTC+TGG | + | chr1.3:35247146-35247165 | None:intergenic | 35.0% |
| ! | TCTCCGCTAAAATCTTTTCT+AGG | - | chr1.3:35246411-35246430 | MS.gene89750:CDS | 35.0% |
| ! | TGACTCCTATAGATTTTGCA+AGG | + | chr1.3:35247158-35247177 | None:intergenic | 35.0% |
| !! | ATTTGCTATCATTCCTCCTT+CGG | - | chr1.3:35247215-35247234 | MS.gene89750:intron | 35.0% |
| AACTTCATTACTACCCCAAC+TGG | + | chr1.3:35247598-35247617 | None:intergenic | 40.0% | |
| AAGCAAATTGCAGAGGAACA+TGG | - | chr1.3:35247636-35247655 | MS.gene89750:intron | 40.0% | |
| AGGTTAGGAATGAACACAAC+TGG | + | chr1.3:35248072-35248091 | None:intergenic | 40.0% | |
| ATAACCGCTTTCTCTCCTTT+AGG | - | chr1.3:35247561-35247580 | MS.gene89750:intron | 40.0% | |
| CACTCCTTTCAGATCAAATG+TGG | + | chr1.3:35247103-35247122 | None:intergenic | 40.0% | |
| CATTTGATCTGAAAGGAGTG+TGG | - | chr1.3:35247103-35247122 | MS.gene89750:intron | 40.0% | |
| CTTAGATGGTTGTATGAGCA+AGG | - | chr1.3:35247916-35247935 | MS.gene89750:CDS | 40.0% | |
| GCTCTTCAACTTGGTCTAAT+TGG | - | chr1.3:35245562-35245581 | MS.gene89750:CDS | 40.0% | |
| GCTGAATTCTAATTGGACGT+CGG | - | chr1.3:35247409-35247428 | MS.gene89750:intron | 40.0% | |
| GGAGAGAATGAAGCAAAACT+TGG | - | chr1.3:35247969-35247988 | MS.gene89750:CDS | 40.0% | |
| GGATGGAGTTCAAAACTCAT+AGG | + | chr1.3:35245960-35245979 | None:intergenic | 40.0% | |
| GTTAGTAACCCAAAGTTTGG+AGG | + | chr1.3:35245611-35245630 | None:intergenic | 40.0% | |
| TAAGTAGCTGCAAGTATCCA+CGG | - | chr1.3:35246592-35246611 | MS.gene89750:intron | 40.0% | |
| TAGATGGTTGTATGAGCAAG+GGG | - | chr1.3:35247918-35247937 | MS.gene89750:CDS | 40.0% | |
| TATCAGATACTGATACTCCG+TGG | + | chr1.3:35246612-35246631 | None:intergenic | 40.0% | |
| TCATCTCCACCTATATTTGG+TGG | + | chr1.3:35247485-35247504 | None:intergenic | 40.0% | |
| TGATACGGATACTCCATGTT+TGG | - | chr1.3:35246627-35246646 | MS.gene89750:intron | 40.0% | |
| TTGGCCAGTGGATCAAATAA+AGG | + | chr1.3:35247029-35247048 | None:intergenic | 40.0% | |
| ! | CGGAGTATCAGTATCTGATA+CGG | - | chr1.3:35246612-35246631 | MS.gene89750:intron | 40.0% |
| ! | GAGGTAAGACTTTTGCTTAC+TGG | + | chr1.3:35245675-35245694 | None:intergenic | 40.0% |
| ! | TGGACCTTTATTTGATCCAC+TGG | - | chr1.3:35247022-35247041 | MS.gene89750:intron | 40.0% |
| ! | TTCATTCCTAACCTTTGGGA+TGG | - | chr1.3:35248078-35248097 | MS.gene89750:CDS | 40.0% |
| !! | TCATTCCTAACCTTTGGGAT+GGG | - | chr1.3:35248079-35248098 | MS.gene89750:CDS | 40.0% |
| !! | TTGTTTGTTGGTTCTCTGGT+AGG | + | chr1.3:35246854-35246873 | None:intergenic | 40.0% |
| AGAGCAGGAAGAACAAGATG+AGG | + | chr1.3:35245640-35245659 | None:intergenic | 45.0% | |
| AGCTTCTTCTGATGCCAAAC+TGG | + | chr1.3:35247510-35247529 | None:intergenic | 45.0% | |
| AGGTGGAGATGAATCCAGTT+TGG | - | chr1.3:35247493-35247512 | MS.gene89750:intron | 45.0% | |
| CTTACTTGATTGACCGAAGG+AGG | + | chr1.3:35247231-35247250 | None:intergenic | 45.0% | |
| GAGAGGGAGATTCATCTCAT+AGG | - | chr1.3:35246729-35246748 | MS.gene89750:intron | 45.0% | |
| GCAGCTGTAACAAACAACGA+TGG | - | chr1.3:35245430-35245449 | MS.gene89750:CDS | 45.0% | |
| GCCAGTGATAGCATTTGGTA+CGG | - | chr1.3:35245408-35245427 | MS.gene89750:CDS | 45.0% | |
| TACGGCAATTCCCAATTTCC+CGG | + | chr1.3:35247063-35247082 | None:intergenic | 45.0% | |
| TATGGCTCAGAAGAGGCTTT+AGG | - | chr1.3:35245523-35245542 | MS.gene89750:CDS | 45.0% | |
| TGGCTTACTTGATTGACCGA+AGG | + | chr1.3:35247234-35247253 | None:intergenic | 45.0% | |
| ! | TCTCTCCTTTAGGAGCCAAA+GGG | - | chr1.3:35247571-35247590 | MS.gene89750:intron | 45.0% |
| ! | TGGAGTGATTTCTGAAGAGC+AGG | + | chr1.3:35245655-35245674 | None:intergenic | 45.0% |
| ! | TTCTCTCCTTTAGGAGCCAA+AGG | - | chr1.3:35247570-35247589 | MS.gene89750:intron | 45.0% |
| !! | CATTCCTAACCTTTGGGATG+GGG | - | chr1.3:35248080-35248099 | MS.gene89750:CDS | 45.0% |
| !!! | TTTATTTTAAATTAAAATTG+AGG | - | chr1.3:35245882-35245901 | MS.gene89750:CDS | 5.0% |
| CAGTGTGAAGCCGGGAAATT+GGG | - | chr1.3:35247050-35247069 | MS.gene89750:intron | 50.0% | |
| GCCGTACCAAATGCTATCAC+TGG | + | chr1.3:35245412-35245431 | None:intergenic | 50.0% | |
| GGCTCCTAAAGGAGAGAAAG+CGG | + | chr1.3:35247568-35247587 | None:intergenic | 50.0% | |
| GGCTGTGAAGAGCTACAACA+AGG | - | chr1.3:35247948-35247967 | MS.gene89750:CDS | 50.0% | |
| GTATGAGCAAGGGGTGACTA+TGG | - | chr1.3:35247927-35247946 | MS.gene89750:CDS | 50.0% | |
| GTTTCCCCATCCCAAAGGTT+AGG | + | chr1.3:35248087-35248106 | None:intergenic | 50.0% | |
| TCAGTGTGAAGCCGGGAAAT+TGG | - | chr1.3:35247049-35247068 | MS.gene89750:intron | 50.0% | |
| TTTCCCGGCTTCACACTGAT+TGG | + | chr1.3:35247048-35247067 | None:intergenic | 50.0% | |
| ! | CTCTCCTTTAGGAGCCAAAG+GGG | - | chr1.3:35247572-35247591 | MS.gene89750:intron | 50.0% |
| ! | GAAAGGAGTGTGGACAGCAA+TGG | - | chr1.3:35247113-35247132 | MS.gene89750:intron | 50.0% |
| CTGGCCAATCAGTGTGAAGC+CGG | - | chr1.3:35247041-35247060 | MS.gene89750:intron | 55.0% | |
| TGGCCAATCAGTGTGAAGCC+GGG | - | chr1.3:35247042-35247061 | MS.gene89750:intron | 55.0% | |
| ! | GCTTCACACTGATTGGCCAG+TGG | + | chr1.3:35247041-35247060 | None:intergenic | 55.0% |
| ACTACCCCAACTGGCCCCTT+TGG | + | chr1.3:35247589-35247608 | None:intergenic | 60.0% | |
| AGGAGCCAAAGGGGCCAGTT+GGG | - | chr1.3:35247581-35247600 | MS.gene89750:intron | 60.0% | |
| TAGGAGCCAAAGGGGCCAGT+TGG | - | chr1.3:35247580-35247599 | MS.gene89750:intron | 60.0% | |
| ! | CTGGCCCCTTTGGCTCCTAA+AGG | + | chr1.3:35247579-35247598 | None:intergenic | 60.0% |
| GGAGCCAAAGGGGCCAGTTG+GGG | - | chr1.3:35247582-35247601 | MS.gene89750:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 35245406 | 35248110 | 35245406 | ID=MS.gene89750 |
| chr1.3 | mRNA | 35245406 | 35248110 | 35245406 | ID=MS.gene89750.t1;Parent=MS.gene89750 |
| chr1.3 | exon | 35247842 | 35248110 | 35247842 | ID=MS.gene89750.t1.exon1;Parent=MS.gene89750.t1 |
| chr1.3 | CDS | 35247842 | 35248110 | 35247842 | ID=cds.MS.gene89750.t1;Parent=MS.gene89750.t1 |
| chr1.3 | exon | 35246271 | 35246514 | 35246271 | ID=MS.gene89750.t1.exon2;Parent=MS.gene89750.t1 |
| chr1.3 | CDS | 35246271 | 35246514 | 35246271 | ID=cds.MS.gene89750.t1;Parent=MS.gene89750.t1 |
| chr1.3 | exon | 35245842 | 35246021 | 35245842 | ID=MS.gene89750.t1.exon3;Parent=MS.gene89750.t1 |
| chr1.3 | CDS | 35245842 | 35246021 | 35245842 | ID=cds.MS.gene89750.t1;Parent=MS.gene89750.t1 |
| chr1.3 | exon | 35245406 | 35245606 | 35245406 | ID=MS.gene89750.t1.exon4;Parent=MS.gene89750.t1 |
| chr1.3 | CDS | 35245406 | 35245606 | 35245406 | ID=cds.MS.gene89750.t1;Parent=MS.gene89750.t1 |
| Gene Sequence |
| Protein sequence |
