AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89993

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89993.t1 MTR_4g055110 93.007 429 27 1 1 426 1 429 0.0 827
MS.gene89993.t1 MTR_1g072540 51.304 115 56 0 9 123 26 140 1.32e-35 134
MS.gene89993.t1 MTR_1g072540 28.436 211 115 2 216 423 150 327 1.48e-25 106
MS.gene89993.t1 MTR_4g117330 52.632 114 53 1 13 125 61 174 2.49e-32 126
MS.gene89993.t1 MTR_4g117330 33.152 184 89 4 216 398 181 331 7.85e-22 96.7
MS.gene89993.t1 MTR_1g110590 52.542 118 53 3 9 123 55 172 1.02e-30 122
MS.gene89993.t1 MTR_1g110590 32.701 211 99 5 198 394 180 361 5.19e-26 108
MS.gene89993.t1 MTR_2g022140 52.294 109 51 1 18 125 39 147 3.46e-29 117
MS.gene89993.t1 MTR_2g022140 33.516 182 85 3 215 392 153 302 2.35e-23 100
MS.gene89993.t1 MTR_7g028880 48.182 110 56 1 15 123 11 120 5.88e-29 115
MS.gene89993.t1 MTR_7g028880 30.978 184 91 4 216 394 130 282 4.45e-19 87.8
MS.gene89993.t1 MTR_7g024250 48.182 110 56 1 15 123 11 120 1.55e-28 114
MS.gene89993.t1 MTR_7g024250 30.435 184 92 3 216 394 130 282 4.71e-19 87.8
MS.gene89993.t1 MTR_3g019900 42.857 126 66 2 15 139 12 132 6.01e-27 110
MS.gene89993.t1 MTR_3g019900 26.937 271 157 5 149 409 59 298 4.14e-19 87.8
MS.gene89993.t1 MTR_3g019930 42.857 126 66 2 15 139 12 132 6.07e-27 110
MS.gene89993.t1 MTR_3g019930 27.306 271 156 5 149 409 59 298 4.92e-20 90.5
MS.gene89993.t1 MTR_2g075100 46.364 110 58 1 15 123 11 120 9.22e-27 109
MS.gene89993.t1 MTR_2g075100 28.261 184 96 3 216 394 130 282 3.26e-16 79.3
MS.gene89993.t1 MTR_6g045293 45.536 112 60 1 15 125 11 122 2.41e-26 108
MS.gene89993.t1 MTR_6g045293 27.734 256 144 4 149 394 58 282 6.66e-18 84.7
MS.gene89993.t1 MTR_6g045287 45.536 112 60 1 15 125 11 122 2.41e-26 108
MS.gene89993.t1 MTR_6g045287 27.734 256 144 4 149 394 58 282 6.66e-18 84.7
MS.gene89993.t1 MTR_3g020760 44.068 118 65 1 7 123 2 119 3.00e-26 108
MS.gene89993.t1 MTR_3g020760 30.653 199 102 4 216 409 129 296 6.19e-20 90.5
MS.gene89993.t1 MTR_3g020100 44.954 109 59 1 16 123 10 118 6.77e-26 107
MS.gene89993.t1 MTR_3g020100 30.151 199 103 3 216 409 128 295 4.69e-21 93.6
MS.gene89993.t1 MTR_3g020155 44.954 109 59 1 16 123 10 118 6.77e-26 107
MS.gene89993.t1 MTR_3g020155 30.151 199 103 3 216 409 128 295 4.69e-21 93.6
MS.gene89993.t1 MTR_3g011590 42.373 118 67 1 7 123 2 119 1.71e-25 106
MS.gene89993.t1 MTR_3g011590 28.936 235 126 5 185 409 93 296 2.77e-20 91.3
MS.gene89993.t1 MTR_3g019980 44.037 109 60 1 16 123 11 119 3.55e-25 105
MS.gene89993.t1 MTR_3g019980 28.033 239 131 5 181 409 89 296 1.47e-18 86.3
MS.gene89993.t1 MTR_3g020740 43.220 118 66 1 7 123 2 119 4.24e-25 104
MS.gene89993.t1 MTR_3g020740 27.344 256 145 5 149 394 57 281 1.45e-17 83.2
MS.gene89993.t1 MTR_7g407170 45.455 110 55 2 15 123 11 116 8.49e-25 103
MS.gene89993.t1 MTR_7g407170 29.348 184 94 3 216 394 126 278 6.03e-18 84.3
MS.gene89993.t1 MTR_3g019820 27.372 274 156 6 149 410 47 289 2.35e-20 91.3
MS.gene89993.t1 MTR_3g019820 40.741 108 58 2 33 139 18 120 4.06e-19 87.8
MS.gene89993.t1 MTR_2g078120 37.931 116 72 0 8 123 37 152 3.38e-20 92.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89993.t1 AT2G27760 57.457 409 159 4 22 426 25 422 1.06e-159 459
MS.gene89993.t1 AT1G68460 50.000 112 55 1 15 125 63 174 3.74e-31 123
MS.gene89993.t1 AT1G68460 31.122 196 94 6 212 395 191 357 1.10e-17 84.7
MS.gene89993.t1 AT5G19040 49.565 115 57 1 11 124 27 141 1.10e-30 121
MS.gene89993.t1 AT5G19040 35.519 183 82 3 215 393 148 298 4.07e-26 108
MS.gene89993.t1 AT5G19040 49.565 115 57 1 11 124 27 141 1.10e-30 121
MS.gene89993.t1 AT5G19040 35.519 183 82 3 215 393 148 298 4.07e-26 108
MS.gene89993.t1 AT5G19040 49.565 115 57 1 11 124 27 141 1.10e-30 121
MS.gene89993.t1 AT5G19040 35.519 183 82 3 215 393 148 298 4.07e-26 108
MS.gene89993.t1 AT3G63110 46.667 135 66 2 5 139 30 158 1.56e-30 120
MS.gene89993.t1 AT3G63110 31.915 188 89 3 216 397 157 311 2.45e-23 100
MS.gene89993.t1 AT4G24650 52.294 109 51 1 18 125 6 114 1.50e-28 115
MS.gene89993.t1 AT4G24650 27.692 195 97 6 215 394 134 299 4.40e-16 79.3
MS.gene89993.t1 AT1G25410 49.091 110 54 2 18 125 46 155 5.57e-27 111
MS.gene89993.t1 AT3G23630 46.721 122 60 3 13 130 31 151 7.29e-26 107
MS.gene89993.t1 AT3G23630 35.484 186 83 4 217 398 152 304 4.39e-25 105
MS.gene89993.t1 AT3G19160 48.598 107 54 1 18 123 44 150 1.51e-24 103
MS.gene89993.t1 AT5G20040 40.196 102 61 0 19 120 52 153 2.94e-19 90.1
MS.gene89993.t1 AT5G20040 40.196 102 61 0 19 120 52 153 3.17e-19 90.1
MS.gene89993.t1 AT5G20040 40.196 102 61 0 19 120 52 153 3.85e-19 90.1

Find 97 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGACCTTTCTATGGTTATT+TGG 0.152843 4.2:+48269931 None:intergenic
CGATTTGAGTGAAAGCTATT+TGG 0.170907 4.2:-48270149 MS.gene89993:CDS
TCCACCTGGCACGGGGTATT+TGG 0.215200 4.2:-48267937 MS.gene89993:CDS
AGAGTTGTAGATTTAGTATC+AGG 0.260641 4.2:+48268753 None:intergenic
TACTAAATCTACAACTCTTT+TGG 0.272839 4.2:-48268748 MS.gene89993:CDS
GGGTAGTGTGAATCCGAATT+TGG 0.284177 4.2:-48271810 MS.gene89993:CDS
TTACTCATCTGACCTTTCTA+TGG 0.299747 4.2:+48269923 None:intergenic
TAGGCAAATCAAATGAAGTA+TGG 0.323545 4.2:-48268122 MS.gene89993:CDS
CGGTGTGTTGCATCATCTAT+TGG 0.325237 4.2:-48271831 MS.gene89993:CDS
GGAAGCTTGTCGTCAACCTT+TGG 0.331504 4.2:-48268042 MS.gene89993:CDS
TGGATTCTATTTGCTGCAAC+TGG 0.345397 4.2:+48269955 None:intergenic
TGGAACTAATTACTATATTC+AGG 0.349487 4.2:-48271620 MS.gene89993:intron
AATAGTGAGCCATTGTTTGA+TGG 0.370761 4.2:-48268804 MS.gene89993:CDS
CCGGTTATGACCACCACTTT+TGG 0.371072 4.2:+48271992 None:intergenic
CCTTTCTATGGTTATTTGGA+TGG 0.372046 4.2:+48269935 None:intergenic
GAAGCTTGTCGTCAACCTTT+GGG 0.377441 4.2:-48268041 MS.gene89993:CDS
GATTTGAGTGAAAGCTATTT+GGG 0.386570 4.2:-48270148 MS.gene89993:CDS
CACTTACCTGTTATTGTTGG+TGG 0.392726 4.2:-48271640 MS.gene89993:CDS
GAATGTTGTTACTATCTTTG+TGG 0.400302 4.2:+48268077 None:intergenic
TTAGTTCCACCAACAATAAC+AGG 0.414098 4.2:+48271634 None:intergenic
CCAAAAGTGGTGGTCATAAC+CGG 0.420448 4.2:-48271992 MS.gene89993:CDS
TGGCCCCTTCTGTTTCAGAT+AGG 0.426704 4.2:-48267917 None:intergenic
ACTGGAAACATTGTTTGGTT+GGG 0.428105 4.2:-48268271 MS.gene89993:CDS
ATTGAGTCCAGAGGTCCCTT+TGG 0.428923 4.2:+48267989 None:intergenic
TTAGCAGTGAATTCCAAATT+CGG 0.428934 4.2:+48271797 None:intergenic
AGTCGACTGGAAACATTGTT+TGG 0.429317 4.2:-48268276 MS.gene89993:CDS
TTCAGAGAAGGGGAGTTTGT+TGG 0.437008 4.2:+48271859 None:intergenic
AATCACTTACCTGTTATTGT+TGG 0.458319 4.2:-48271643 MS.gene89993:CDS
ATAACCGGCCCCACCGGCTC+CGG 0.461019 4.2:-48271977 MS.gene89993:CDS
ATTAGTTTGTACTCTCGAAC+TGG 0.462338 4.2:-48269611 MS.gene89993:CDS
GAAGAGGATGCTCAGTCGAC+TGG 0.463895 4.2:-48268289 MS.gene89993:CDS
CATTGGTGTCCGCGAATTTG+AGG 0.465811 4.2:-48268901 MS.gene89993:CDS
GGTGTGTTGCATCATCTATT+GGG 0.466962 4.2:-48271830 MS.gene89993:CDS
CAGGAGACTTGTCCGCCGTC+AGG 0.470900 4.2:-48268694 MS.gene89993:intron
ACAACATTCCTGAGTGAGAA+TGG 0.472131 4.2:-48268063 MS.gene89993:CDS
TTAGAAGATCCTCAAATTCG+CGG 0.475029 4.2:+48268892 None:intergenic
ATTGTTTGATGGTAATTTGT+TGG 0.477278 4.2:-48268793 MS.gene89993:CDS
GACTGGAAACATTGTTTGGT+TGG 0.477682 4.2:-48268272 MS.gene89993:CDS
GGGGCCAAATACCCCGTGCC+AGG 0.479978 4.2:+48267933 None:intergenic
TCAACCTTTGGGATGTCAAA+TGG 0.480422 4.2:-48268030 MS.gene89993:CDS
TTCTAGAATCCACCTGGCAC+GGG 0.485765 4.2:-48267945 MS.gene89993:CDS
AAATAATCCAAAGGGACCTC+TGG 0.497189 4.2:-48267996 MS.gene89993:CDS
AATGGCCTGTCGCAAACCTC+TGG 0.502020 4.2:+48268920 None:intergenic
ATCAGCGTTGATTACTTCGA+TGG 0.504631 4.2:+48271916 None:intergenic
TCTACATATCTATCTAGCAC+TGG 0.510259 4.2:+48269020 None:intergenic
AAGAGAGGGGAAAATAATTG+AGG 0.512112 4.2:-48268841 MS.gene89993:CDS
GAGTTGTAGATTTAGTATCA+GGG 0.512186 4.2:+48268754 None:intergenic
GTGGGTAGGGTTTATTGTTG+CGG 0.523153 4.2:+48272024 None:intergenic
AGAGAGGGGAAAATAATTGA+GGG 0.523489 4.2:-48268840 MS.gene89993:CDS
TCAGCGTTGATTACTTCGAT+GGG 0.524921 4.2:+48271917 None:intergenic
AGAAGCAATTGAGAAAGTAA+AGG 0.528300 4.2:-48268724 MS.gene89993:CDS
CTCAAATTCGCGGACACCAA+TGG 0.531223 4.2:+48268902 None:intergenic
CTTACTTAATATTGATTCCG+TGG 0.533744 4.2:+48268230 None:intergenic
AGAGGTTTGCGACAGGCCAT+TGG 0.537281 4.2:-48268918 MS.gene89993:CDS
TTTGGGATGTCAAATGGCAC+TGG 0.537369 4.2:-48268024 MS.gene89993:CDS
AGTTGTAGATTTAGTATCAG+GGG 0.537453 4.2:+48268755 None:intergenic
AGCTATTTGGGTGACTCACC+TGG 0.539708 4.2:-48270136 MS.gene89993:intron
CTGACGGCGGACAAGTCTCC+TGG 0.546827 4.2:+48268695 None:intergenic
CTCCCCTTCTCTGAACAAAA+CGG 0.547500 4.2:-48271851 MS.gene89993:CDS
CCATCCAAATAACCATAGAA+AGG 0.552132 4.2:-48269935 MS.gene89993:intron
CTTGTGGCAGGGCAGAAGTG+GGG 0.552448 4.2:-48269098 MS.gene89993:intron
GTGGTCATAACCGGCCCCAC+CGG 0.553825 4.2:-48271983 MS.gene89993:CDS
GTAGATCACATGATGGATGC+AGG 0.554563 4.2:-48268990 MS.gene89993:CDS
GCCAAATACCCCGTGCCAGG+TGG 0.557900 4.2:+48267936 None:intergenic
TTGATGGTAATTTGTTGGAG+TGG 0.562237 4.2:-48268788 MS.gene89993:CDS
CATACACTATGTTGATTCCA+CGG 0.564623 4.2:-48268247 MS.gene89993:CDS
CTACATATCTATCTAGCACT+GGG 0.567510 4.2:+48269021 None:intergenic
CCACCCAAAACAACCAAAAG+TGG 0.569560 4.2:-48272005 MS.gene89993:CDS
AGATAGATATGTAGAGCAGA+GGG 0.579087 4.2:-48269012 MS.gene89993:CDS
GTTCTAGAATCCACCTGGCA+CGG 0.586966 4.2:-48267946 MS.gene89993:CDS
GAGGCCACTGTAGACTTGCA+TGG 0.588760 4.2:+48271892 None:intergenic
TTATACCAGAGGTTTGCGAC+AGG 0.593044 4.2:-48268925 MS.gene89993:CDS
AGTATGGAATAGACAAGTGG+TGG 0.597956 4.2:-48268106 MS.gene89993:CDS
TGGGACGAAAATAATCCAAA+GGG 0.607622 4.2:-48268004 MS.gene89993:CDS
ACAAGCTTCCATTCTCACTC+AGG 0.613267 4.2:+48268055 None:intergenic
TAGATAGATATGTAGAGCAG+AGG 0.614018 4.2:-48269013 MS.gene89993:CDS
CTGGGACGAAAATAATCCAA+AGG 0.619151 4.2:-48268005 MS.gene89993:CDS
TTGGGATGTCAAATGGCACT+GGG 0.629926 4.2:-48268023 MS.gene89993:CDS
TTTCCTATCTGAAACAGAAG+GGG 0.641341 4.2:+48267914 None:intergenic
AACAAATTACCATCAAACAA+TGG 0.643199 4.2:+48268795 None:intergenic
ATGAATGCAGATTATACCAG+AGG 0.643969 4.2:-48268936 MS.gene89993:CDS
CTGGACTCAATACACATGCA+AGG 0.646107 4.2:-48267977 MS.gene89993:CDS
AGAAAGTAAAGGTTAATACC+AGG 0.649086 4.2:-48268713 MS.gene89993:CDS
GCAGAGGGTAGATCACATGA+TGG 0.650378 4.2:-48268997 MS.gene89993:CDS
AAACAAGCAAACAATGACGA+CGG 0.652291 4.2:-48272053 None:intergenic
TACTTCGATGGGGAAGTGTG+AGG 0.653738 4.2:+48271928 None:intergenic
GCTATGTTCTAGAATCCACC+TGG 0.654501 4.2:-48267951 MS.gene89993:CDS
TCTAGAATCCACCTGGCACG+GGG 0.656043 4.2:-48267944 MS.gene89993:CDS
CCCAAAACAACCAAAAGTGG+TGG 0.656500 4.2:-48272002 MS.gene89993:CDS
GATTCCATGCAAGTCTACAG+TGG 0.657414 4.2:-48271896 MS.gene89993:CDS
TGAAGTATGGAATAGACAAG+TGG 0.657466 4.2:-48268109 MS.gene89993:CDS
AGTGCCATTTGACATCCCAA+AGG 0.668646 4.2:+48268026 None:intergenic
GAAGTGTGAGGATAAATCGA+CGG 0.670955 4.2:+48271940 None:intergenic
GTTTGTTGGTGAGAATATCG+AGG 0.682479 4.2:+48271873 None:intergenic
CAGCGTTGATTACTTCGATG+GGG 0.689009 4.2:+48271918 None:intergenic
TGCATGTGTATTGAGTCCAG+AGG 0.718690 4.2:+48267980 None:intergenic
GTTTCTGCTAGATGACTCGA+CGG 0.724111 4.2:-48270173 MS.gene89993:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GGTATATATTTAATATTTAA+AGG - chr4.2:48270552-48270571 MS.gene89993:intron 10.0%
!!! TATAATTATAATGATTTTCT+TGG - chr4.2:48270494-48270513 MS.gene89993:intron 10.0%
!!! TTTAATGTTTATGATTTTAA+GGG - chr4.2:48270161-48270180 MS.gene89993:CDS 10.0%
!!! ATTTGGATATTCTATATTTT+AGG - chr4.2:48271817-48271836 MS.gene89993:CDS 15.0%
!!! CTTTAATGTTTATGATTTTA+AGG - chr4.2:48270160-48270179 MS.gene89993:CDS 15.0%
!!! TTTAGAATTATCTATTGATT+TGG - chr4.2:48271800-48271819 MS.gene89993:CDS 15.0%
!! AAAAACAAAAATCAAAGAGA+GGG - chr4.2:48271103-48271122 MS.gene89993:intron 20.0%
!! ACTGTATACAAAAATTTAAG+AGG + chr4.2:48268692-48268711 None:intergenic 20.0%
!! AGTTATTTGAATTTCTTAAC+CGG - chr4.2:48270270-48270289 MS.gene89993:intron 20.0%
!! ATAAAATCTTATATGAGCTT+TGG + chr4.2:48268219-48268238 None:intergenic 20.0%
!! GATACTAAATAGTAAATTGA+AGG + chr4.2:48268428-48268447 None:intergenic 20.0%
!! TAGAAATAAAAAATAGAACC+TGG + chr4.2:48269717-48269736 None:intergenic 20.0%
!! TAGTTCCTAAAATATCTATT+TGG - chr4.2:48268771-48268790 MS.gene89993:CDS 20.0%
!!! AACAAATGACATTAGTTTTA+CGG + chr4.2:48271295-48271314 None:intergenic 20.0%
!!! AATATTGGCATTTTTGTTTT+TGG - chr4.2:48271479-48271498 MS.gene89993:intron 20.0%
!!! AATGGAAGTTTTTTTTTTTG+AGG + chr4.2:48270672-48270691 None:intergenic 20.0%
!!! ATATTGGCATTTTTGTTTTT+GGG - chr4.2:48271480-48271499 MS.gene89993:intron 20.0%
!!! ATGGAAGTTTTTTTTTTTGA+GGG + chr4.2:48270671-48270690 None:intergenic 20.0%
!!! ATTTTTTAAAATTCAAACCC+TGG - chr4.2:48270578-48270597 MS.gene89993:intron 20.0%
!!! CATTTGTCATTTAAATTTTG+AGG - chr4.2:48268491-48268510 MS.gene89993:intron 20.0%
!!! CATTTTTCAACAACTTTTTA+GGG - chr4.2:48268531-48268550 MS.gene89993:intron 20.0%
!!! TATTTACAGAACATTTCTTT+TGG - chr4.2:48271338-48271357 MS.gene89993:intron 20.0%
!!! TCTTGTCTTTTAAATAATGT+TGG - chr4.2:48270832-48270851 MS.gene89993:intron 20.0%
!!! TTTTAGGAACTAACTTTAAA+AGG + chr4.2:48268763-48268782 None:intergenic 20.0%
! AAAACAAAAATCAAAGAGAG+GGG - chr4.2:48271104-48271123 MS.gene89993:intron 25.0%
! AACAAATTACCATCAAACAA+TGG + chr4.2:48271166-48271185 None:intergenic 25.0%
! ACTTTAAATGCTTCATCTAT+AGG - chr4.2:48271429-48271448 MS.gene89993:intron 25.0%
! ATAACAATAGAGAGAGAAAA+AGG - chr4.2:48268584-48268603 MS.gene89993:intron 25.0%
! CAAAAACAAAAATCAAAGAG+AGG - chr4.2:48271102-48271121 MS.gene89993:intron 25.0%
! CCTAAAAAGTTGTTGAAAAA+TGG + chr4.2:48268533-48268552 None:intergenic 25.0%
! CTAACTGTATGAATATAAGA+TGG + chr4.2:48270102-48270121 None:intergenic 25.0%
! GAAAATTTACAAGATTGAGA+TGG + chr4.2:48271754-48271773 None:intergenic 25.0%
! GAGAATAAAAATGAAGACAT+GGG - chr4.2:48270729-48270748 MS.gene89993:intron 25.0%
! GTTATTTGAATTTCTTAACC+GGG - chr4.2:48270271-48270290 MS.gene89993:intron 25.0%
! TATATTTCTTCAAACTAGCA+TGG + chr4.2:48271609-48271628 None:intergenic 25.0%
! TCACAAAAGTTGTTGAAAAT+TGG - chr4.2:48268650-48268669 MS.gene89993:intron 25.0%
! TGGAACTAATTACTATATTC+AGG - chr4.2:48268338-48268357 MS.gene89993:intron 25.0%
! TTAACAGTTTCTCTTATAGT+TGG + chr4.2:48269421-48269440 None:intergenic 25.0%
! TTATTTGAATTTCTTAACCG+GGG - chr4.2:48270272-48270291 MS.gene89993:intron 25.0%
! TTGAAACAAATCCCATATAA+GGG + chr4.2:48270470-48270489 None:intergenic 25.0%
!! ACAAGTTTTTGAATTTTCCT+TGG + chr4.2:48270530-48270549 None:intergenic 25.0%
!! ATAAACTCTTTTCCCTTATA+TGG - chr4.2:48270455-48270474 MS.gene89993:intron 25.0%
!! ATTGTTTGATGGTAATTTGT+TGG - chr4.2:48271165-48271184 MS.gene89993:intron 25.0%
!! CATCTATAGGACAATTATTT+TGG - chr4.2:48271442-48271461 MS.gene89993:intron 25.0%
!! GGAAAATTCAAAAACTTGTT+TGG - chr4.2:48270531-48270550 MS.gene89993:intron 25.0%
!! TAAACTCTTTTCCCTTATAT+GGG - chr4.2:48270456-48270475 MS.gene89993:intron 25.0%
!! TACTAAATCTACAACTCTTT+TGG - chr4.2:48271210-48271229 MS.gene89993:intron 25.0%
!! TTGTTATTGTCCAATAAGAA+TGG + chr4.2:48268571-48268590 None:intergenic 25.0%
!! TTTTTGAATTTTCCTTGGAA+TGG + chr4.2:48270525-48270544 None:intergenic 25.0%
!!! ATAGGACAATTATTTTGGAT+GGG - chr4.2:48271447-48271466 MS.gene89993:intron 25.0%
!!! CCATTTTTCAACAACTTTTT+AGG - chr4.2:48268530-48268549 MS.gene89993:intron 25.0%
!!! TATAGGACAATTATTTTGGA+TGG - chr4.2:48271446-48271465 MS.gene89993:intron 25.0%
!!! TGATTGTTGTTTTATAAGTG+TGG - chr4.2:48270904-48270923 MS.gene89993:intron 25.0%
!!! TTCTAAAGCATTGATTCTAA+GGG + chr4.2:48270765-48270784 None:intergenic 25.0%
!!! TTTCTAAAGCATTGATTCTA+AGG + chr4.2:48270766-48270785 None:intergenic 25.0%
AAAAGGAAGAGAGAGAATAA+TGG - chr4.2:48268601-48268620 MS.gene89993:intron 30.0%
AACCTCTTGTGTAAAAAACA+GGG + chr4.2:48269063-48269082 None:intergenic 30.0%
AATCACTTACCTGTTATTGT+TGG - chr4.2:48268315-48268334 MS.gene89993:intron 30.0%
AGAAAGTAAAGGTTAATACC+AGG - chr4.2:48271245-48271264 MS.gene89993:intron 30.0%
AGAAGCAATTGAGAAAGTAA+AGG - chr4.2:48271234-48271253 MS.gene89993:intron 30.0%
AGAGTTGTAGATTTAGTATC+AGG + chr4.2:48271208-48271227 None:intergenic 30.0%
AGTTGTAGATTTAGTATCAG+GGG + chr4.2:48271206-48271225 None:intergenic 30.0%
ATATTATGCTACGCGATAAA+AGG + chr4.2:48269157-48269176 None:intergenic 30.0%
ATTGCAAATAGGAGATAGTT+TGG - chr4.2:48269324-48269343 MS.gene89993:intron 30.0%
CCTAAAATATCTATTTGGCA+TGG - chr4.2:48268776-48268795 MS.gene89993:CDS 30.0%
CGAGAATAAAAATGAAGACA+TGG - chr4.2:48270728-48270747 MS.gene89993:intron 30.0%
CGCGTAGCATAATAAAAAAA+GGG - chr4.2:48268956-48268975 MS.gene89993:CDS 30.0%
CTTGAAACAAATCCCATATA+AGG + chr4.2:48270471-48270490 None:intergenic 30.0%
GAATGTTGTTACTATCTTTG+TGG + chr4.2:48271884-48271903 None:intergenic 30.0%
GAGTTGTAGATTTAGTATCA+GGG + chr4.2:48271207-48271226 None:intergenic 30.0%
GATTTGAGTGAAAGCTATTT+GGG - chr4.2:48269810-48269829 MS.gene89993:intron 30.0%
GCACTTTCAATTAATTTCTG+AGG - chr4.2:48270237-48270256 MS.gene89993:intron 30.0%
GCATCATGGAGTAATTTAAT+TGG + chr4.2:48268738-48268757 None:intergenic 30.0%
TAATTTCTATGAACTGACAG+TGG + chr4.2:48268832-48268851 None:intergenic 30.0%
TACAATACACCAAAAATGGT+GGG + chr4.2:48269030-48269049 None:intergenic 30.0%
TAGCCACTAAACATTGAATT+TGG + chr4.2:48269353-48269372 None:intergenic 30.0%
TAGGCAAATCAAATGAAGTA+TGG - chr4.2:48271836-48271855 MS.gene89993:CDS 30.0%
TATTATGCTACGCGATAAAA+GGG + chr4.2:48269156-48269175 None:intergenic 30.0%
TCGCGTAGCATAATAAAAAA+AGG - chr4.2:48268955-48268974 MS.gene89993:CDS 30.0%
TGACCAAATTCAATGTTTAG+TGG - chr4.2:48269347-48269366 MS.gene89993:intron 30.0%
TTAGCAGTGAATTCCAAATT+CGG + chr4.2:48268164-48268183 None:intergenic 30.0%
TTATTGTCCAATAAGAATGG+AGG + chr4.2:48268568-48268587 None:intergenic 30.0%
! AACTTTAAAAGGTTGCATCA+TGG + chr4.2:48268752-48268771 None:intergenic 30.0%
! ATTTTGTTCTCGATCTGTAA+TGG - chr4.2:48271564-48271583 MS.gene89993:intron 30.0%
! CCATGCCAAATAGATATTTT+AGG + chr4.2:48268779-48268798 None:intergenic 30.0%
! CTTATATGGGATTTGTTTCA+AGG - chr4.2:48270469-48270488 MS.gene89993:intron 30.0%
! GTAATTTTGTATGCATCACA+GGG - chr4.2:48269911-48269930 MS.gene89993:intron 30.0%
! TGTAATTTTGTATGCATCAC+AGG - chr4.2:48269910-48269929 MS.gene89993:intron 30.0%
!! CTTACTTAATATTGATTCCG+TGG + chr4.2:48271731-48271750 None:intergenic 30.0%
!! TATATGAGCTTTGGAACTTA+CGG + chr4.2:48268210-48268229 None:intergenic 30.0%
!! TCTTTTGGTTAGATATGCAA+TGG - chr4.2:48271353-48271372 MS.gene89993:intron 30.0%
!! TTTCTATAGTTCTGATTGCA+TGG + chr4.2:48268450-48268469 None:intergenic 30.0%
!!! AATAATGTTGGTTTTGCTTG+TGG - chr4.2:48270844-48270863 MS.gene89993:intron 30.0%
!!! TTTTTTTGAGGGAATGAGAA+TGG + chr4.2:48270660-48270679 None:intergenic 30.0%
AACTTCCATTCTCATGTAAG+TGG - chr4.2:48270682-48270701 MS.gene89993:intron 35.0%
AAGAGAGGGGAAAATAATTG+AGG - chr4.2:48271117-48271136 MS.gene89993:intron 35.0%
AATAGTGAGCCATTGTTTGA+TGG - chr4.2:48271154-48271173 MS.gene89993:intron 35.0%
ACTGGAAACATTGTTTGGTT+GGG - chr4.2:48271687-48271706 MS.gene89993:intron 35.0%
AGAGAGGGGAAAATAATTGA+GGG - chr4.2:48271118-48271137 MS.gene89993:intron 35.0%
AGATAGATATGTAGAGCAGA+GGG - chr4.2:48270946-48270965 MS.gene89993:intron 35.0%
ATGAATGCAGATTATACCAG+AGG - chr4.2:48271022-48271041 MS.gene89993:intron 35.0%
ATGATTGCTTCAGAAAGTCA+TGG + chr4.2:48271318-48271337 None:intergenic 35.0%
ATGTTGTCAATCGCATAAAG+CGG + chr4.2:48269306-48269325 None:intergenic 35.0%
ATTATGCTACGCGATAAAAG+GGG + chr4.2:48269155-48269174 None:intergenic 35.0%
CAACCTCTTGTGTAAAAAAC+AGG + chr4.2:48269064-48269083 None:intergenic 35.0%
CCAATAAGAATGGAGGAAAA+AGG + chr4.2:48268561-48268580 None:intergenic 35.0%
CCATCCAAATAACCATAGAA+AGG - chr4.2:48270023-48270042 MS.gene89993:CDS 35.0%
CCTTTCTATGGTTATTTGGA+TGG + chr4.2:48270026-48270045 None:intergenic 35.0%
CGATTGACAACATTGCAAAT+AGG - chr4.2:48269313-48269332 MS.gene89993:intron 35.0%
CGATTTGAGTGAAAGCTATT+TGG - chr4.2:48269809-48269828 MS.gene89993:intron 35.0%
CTACATATCTATCTAGCACT+GGG + chr4.2:48270940-48270959 None:intergenic 35.0%
CTGACCTTTCTATGGTTATT+TGG + chr4.2:48270030-48270049 None:intergenic 35.0%
CTTGTGTAAAAAACAGGGTA+AGG + chr4.2:48269058-48269077 None:intergenic 35.0%
GACAAGAAAAAAGACTGAAC+TGG + chr4.2:48270819-48270838 None:intergenic 35.0%
GCACACAAGGATAAGAAAAA+CGG + chr4.2:48269676-48269695 None:intergenic 35.0%
GTACAATACACCAAAAATGG+TGG + chr4.2:48269031-48269050 None:intergenic 35.0%
GTTATCTTCTTTGGCATTCA+TGG - chr4.2:48270414-48270433 MS.gene89993:intron 35.0%
TAGATAGATATGTAGAGCAG+AGG - chr4.2:48270945-48270964 MS.gene89993:intron 35.0%
TATATTCAGGTGCGAATTTC+AGG - chr4.2:48268351-48268370 MS.gene89993:intron 35.0%
TCTACATATCTATCTAGCAC+TGG + chr4.2:48270941-48270960 None:intergenic 35.0%
TCTATTTGGCATGGTTTGAT+CGG - chr4.2:48268785-48268804 MS.gene89993:CDS 35.0%
TCTTTCCACTTACATGAGAA+TGG + chr4.2:48270690-48270709 None:intergenic 35.0%
TGAAGTATGGAATAGACAAG+TGG - chr4.2:48271849-48271868 MS.gene89993:CDS 35.0%
TGCGTACAATACACCAAAAA+TGG + chr4.2:48269034-48269053 None:intergenic 35.0%
TGGGACGAAAATAATCCAAA+GGG - chr4.2:48271954-48271973 MS.gene89993:CDS 35.0%
TGTCCTTGAAAAACTTTGCT+GGG + chr4.2:48270380-48270399 None:intergenic 35.0%
TTACTCATCTGACCTTTCTA+TGG + chr4.2:48270038-48270057 None:intergenic 35.0%
TTAGAAGATCCTCAAATTCG+CGG + chr4.2:48271069-48271088 None:intergenic 35.0%
TTAGTTCCACCAACAATAAC+AGG + chr4.2:48268327-48268346 None:intergenic 35.0%
! AGTTTTACGGTTTTACCTGA+CGG + chr4.2:48271282-48271301 None:intergenic 35.0%
! CCTTTTTCCTCCATTCTTAT+TGG - chr4.2:48268558-48268577 MS.gene89993:intron 35.0%
! TTTAAAATTCAAACCCTGGC+AGG - chr4.2:48270582-48270601 MS.gene89993:intron 35.0%
!! ATATGAGCTTTGGAACTTAC+GGG + chr4.2:48268209-48268228 None:intergenic 35.0%
!! ATTAGTTTGTACTCTCGAAC+TGG - chr4.2:48270347-48270366 MS.gene89993:intron 35.0%
!! CAGAGGTTTGTTATCTTCTT+TGG - chr4.2:48270405-48270424 MS.gene89993:intron 35.0%
!! CATACACTATGTTGATTCCA+CGG - chr4.2:48271711-48271730 MS.gene89993:intron 35.0%
!! TTGATGGTAATTTGTTGGAG+TGG - chr4.2:48271170-48271189 MS.gene89993:intron 35.0%
!!! AGTTTTGTTCATGACAGAAG+AGG - chr4.2:48271653-48271672 MS.gene89993:CDS 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG - chr4.2:48269058-48269077 MS.gene89993:CDS 35.0%
AAATAATCCAAAGGGACCTC+TGG - chr4.2:48271962-48271981 MS.gene89993:CDS 40.0%
AATCCTTATCCCAGTAAGTG+GGG + chr4.2:48269532-48269551 None:intergenic 40.0%
AGTATGGAATAGACAAGTGG+TGG - chr4.2:48271852-48271871 MS.gene89993:CDS 40.0%
AGTCGACTGGAAACATTGTT+TGG - chr4.2:48271682-48271701 MS.gene89993:intron 40.0%
ATCGGATGCATGTGCAATAA+AGG - chr4.2:48268803-48268822 MS.gene89993:CDS 40.0%
CAATCCTTATCCCAGTAAGT+GGG + chr4.2:48269533-48269552 None:intergenic 40.0%
CACTTACCTGTTATTGTTGG+TGG - chr4.2:48268318-48268337 MS.gene89993:intron 40.0%
CTGGGACGAAAATAATCCAA+AGG - chr4.2:48271953-48271972 MS.gene89993:CDS 40.0%
CTGTCCTTGAAAAACTTTGC+TGG + chr4.2:48270381-48270400 None:intergenic 40.0%
CTTGAGACAGTGTGTACAAA+AGG - chr4.2:48270076-48270095 MS.gene89993:intron 40.0%
GAACAGAATAGCAGTTTACC+AGG + chr4.2:48269843-48269862 None:intergenic 40.0%
GAAGTGTGAGGATAAATCGA+CGG + chr4.2:48268021-48268040 None:intergenic 40.0%
GACTGGAAACATTGTTTGGT+TGG - chr4.2:48271686-48271705 MS.gene89993:intron 40.0%
GGTGTGTTGCATCATCTATT+GGG - chr4.2:48268128-48268147 MS.gene89993:intron 40.0%
GTTGTTGTCATGTGACTGAA+AGG + chr4.2:48269109-48269128 None:intergenic 40.0%
TAGAAATGCAGTAATGCACG+TGG + chr4.2:48268403-48268422 None:intergenic 40.0%
TTATGCTACGCGATAAAAGG+GGG + chr4.2:48269154-48269173 None:intergenic 40.0%
TTCTTGGAAATGCCATTCCA+AGG - chr4.2:48270510-48270529 MS.gene89993:intron 40.0%
TTGAATTTCTTAACCGGGGA+TGG - chr4.2:48270276-48270295 MS.gene89993:intron 40.0%
! CTTCCCAGCAAAGTTTTTCA+AGG - chr4.2:48270374-48270393 MS.gene89993:intron 40.0%
! GTTTGTTGGTGAGAATATCG+AGG + chr4.2:48268088-48268107 None:intergenic 40.0%
! TGGATTCTATTTGCTGCAAC+TGG + chr4.2:48270006-48270025 None:intergenic 40.0%
! TTACACAAGAGGTTGTTTCG+AGG - chr4.2:48269069-48269088 MS.gene89993:CDS 40.0%
!! ACACCGTTTTGTTCAGAGAA+GGG + chr4.2:48268113-48268132 None:intergenic 40.0%
!! ACCACCACTTTTGGTTGTTT+TGG + chr4.2:48267960-48267979 None:intergenic 40.0%
!! ATCAGCGTTGATTACTTCGA+TGG + chr4.2:48268045-48268064 None:intergenic 40.0%
!! CCACCACTTTTGGTTGTTTT+GGG + chr4.2:48267959-48267978 None:intergenic 40.0%
!! TCAACCTTTGGGATGTCAAA+TGG - chr4.2:48271928-48271947 MS.gene89993:CDS 40.0%
!! TCAGCGTTGATTACTTCGAT+GGG + chr4.2:48268044-48268063 None:intergenic 40.0%
!! TCTATAGCTTTGTAGCACAG+TGG - chr4.2:48269257-48269276 MS.gene89993:intron 40.0%
!!! CACTTTTGGTTGTTTTGGGT+GGG + chr4.2:48267955-48267974 None:intergenic 40.0%
!!! CAGCAAAGTTTTTCAAGGAC+AGG - chr4.2:48270379-48270398 MS.gene89993:intron 40.0%
AATCTCATTCGTCAGTCCCT+CGG - chr4.2:48268851-48268870 MS.gene89993:CDS 45.0%
ACGTGTAAATATGCCATCCC+CGG + chr4.2:48270292-48270311 None:intergenic 45.0%
ATGCAGTAATGCACGTGGAA+TGG + chr4.2:48268398-48268417 None:intergenic 45.0%
ATTAAAGCTCCTGCATACGC+AGG - chr4.2:48268990-48269009 MS.gene89993:CDS 45.0%
CCAAAAGTGGTGGTCATAAC+CGG - chr4.2:48267966-48267985 MS.gene89993:CDS 45.0%
CCAATCCTTATCCCAGTAAG+TGG + chr4.2:48269534-48269553 None:intergenic 45.0%
CCACCCAAAACAACCAAAAG+TGG - chr4.2:48267953-48267972 MS.gene89993:CDS 45.0%
CCACTTACTGGGATAAGGAT+TGG - chr4.2:48269531-48269550 MS.gene89993:intron 45.0%
CCCAAAACAACCAAAAGTGG+TGG - chr4.2:48267956-48267975 MS.gene89993:CDS 45.0%
CGGTGTGTTGCATCATCTAT+TGG - chr4.2:48268127-48268146 MS.gene89993:intron 45.0%
CTCCCCTTCTCTGAACAAAA+CGG - chr4.2:48268107-48268126 MS.gene89993:CDS 45.0%
CTGGACTCAATACACATGCA+AGG - chr4.2:48271981-48272000 MS.gene89993:CDS 45.0%
GAAGCTTGTCGTCAACCTTT+GGG - chr4.2:48271917-48271936 MS.gene89993:CDS 45.0%
GATGGGAGCTTGCACAATAT+TGG - chr4.2:48271464-48271483 MS.gene89993:intron 45.0%
GATTCCATGCAAGTCTACAG+TGG - chr4.2:48268062-48268081 MS.gene89993:CDS 45.0%
GGGTAGTGTGAATCCGAATT+TGG - chr4.2:48268148-48268167 MS.gene89993:intron 45.0%
GTCATGTGACTGAAAGGTCA+CGG + chr4.2:48269103-48269122 None:intergenic 45.0%
GTGGGTAGGGTTTATTGTTG+CGG + chr4.2:48267937-48267956 None:intergenic 45.0%
GTTTCTGCTAGATGACTCGA+CGG - chr4.2:48269785-48269804 MS.gene89993:intron 45.0%
TCATGTGACTGAAAGGTCAC+GGG + chr4.2:48269102-48269121 None:intergenic 45.0%
TGCAGTAATGCACGTGGAAT+GGG + chr4.2:48268397-48268416 None:intergenic 45.0%
TGCATGTGTATTGAGTCCAG+AGG + chr4.2:48271981-48272000 None:intergenic 45.0%
TTAAAGCTCCTGCATACGCA+GGG - chr4.2:48268991-48269010 MS.gene89993:CDS 45.0%
TTATACCAGAGGTTTGCGAC+AGG - chr4.2:48271033-48271052 MS.gene89993:intron 45.0%
TTCAGAGAAGGGGAGTTTGT+TGG + chr4.2:48268102-48268121 None:intergenic 45.0%
TTCTCCCTGTTATGCTCTTC+AGG - chr4.2:48269749-48269768 MS.gene89993:intron 45.0%
TTGGGATGTCAAATGGCACT+GGG - chr4.2:48271935-48271954 MS.gene89993:CDS 45.0%
! AAGAGCCTGAAGAGCATAAC+AGG + chr4.2:48269757-48269776 None:intergenic 45.0%
! AGAGCCTGAAGAGCATAACA+GGG + chr4.2:48269756-48269775 None:intergenic 45.0%
! ATGCAGGAGCTTTAATGCAC+TGG + chr4.2:48268986-48269005 None:intergenic 45.0%
! TGCAGGAGCTTTAATGCACT+GGG + chr4.2:48268985-48269004 None:intergenic 45.0%
! TTTACGGTTTTACCTGACGG+CGG + chr4.2:48271279-48271298 None:intergenic 45.0%
! TTTGGGATGTCAAATGGCAC+TGG - chr4.2:48271934-48271953 MS.gene89993:CDS 45.0%
!! AGTGCCATTTGACATCCCAA+AGG + chr4.2:48271935-48271954 None:intergenic 45.0%
!! CACACCGTTTTGTTCAGAGA+AGG + chr4.2:48268114-48268133 None:intergenic 45.0%
!! CACCGTTTTGTTCAGAGAAG+GGG + chr4.2:48268112-48268131 None:intergenic 45.0%
!! CAGCGTTGATTACTTCGATG+GGG + chr4.2:48268043-48268062 None:intergenic 45.0%
!! GCTATGTTCTAGAATCCACC+TGG - chr4.2:48272007-48272026 MS.gene89993:CDS 45.0%
!! GTAGATCACATGATGGATGC+AGG - chr4.2:48270968-48270987 MS.gene89993:intron 45.0%
!!! ATGTTGGTTTTGCTTGTGGC+AGG - chr4.2:48270848-48270867 MS.gene89993:intron 45.0%
!!! CCACTTTTGGTTGTTTTGGG+TGG + chr4.2:48267956-48267975 None:intergenic 45.0%
!!! GACGGCGAGTTTTGATTTTC+CGG + chr4.2:48268003-48268022 None:intergenic 45.0%
!!! GAGTTTTGATTTTCCGGAGC+CGG + chr4.2:48267997-48268016 None:intergenic 45.0%
!!! TGTTGGTTTTGCTTGTGGCA+GGG - chr4.2:48270849-48270868 MS.gene89993:intron 45.0%
!!! TTGGTTGTTTTGGGTGGGTA+GGG + chr4.2:48267950-48267969 None:intergenic 45.0%
!!! TTTGGTTGTTTTGGGTGGGT+AGG + chr4.2:48267951-48267970 None:intergenic 45.0%
AGCTATTTGGGTGACTCACC+TGG - chr4.2:48269822-48269841 MS.gene89993:intron 50.0%
ATTCAAACCCTGGCAGGAAG+AGG - chr4.2:48270588-48270607 MS.gene89993:intron 50.0%
ATTGAGTCCAGAGGTCCCTT+TGG + chr4.2:48271972-48271991 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr4.2:48269125-48269144 MS.gene89993:intron 50.0%
CCTAGTCCGAAAGTAACCGA+GGG + chr4.2:48268870-48268889 None:intergenic 50.0%
CCTGGCACCTTGAAACAAGA+CGG + chr4.2:48269699-48269718 None:intergenic 50.0%
CTCAAATTCGCGGACACCAA+TGG + chr4.2:48271059-48271078 None:intergenic 50.0%
CTGGCACCTTGAAACAAGAC+GGG + chr4.2:48269698-48269717 None:intergenic 50.0%
CTTATCCCAGTAAGTGGGGT+CGG + chr4.2:48269528-48269547 None:intergenic 50.0%
GCAGAGGGTAGATCACATGA+TGG - chr4.2:48270961-48270980 MS.gene89993:intron 50.0%
GCGATAAAAGGGGGTAACCT+TGG + chr4.2:48269145-48269164 None:intergenic 50.0%
TCCTAGTCCGAAAGTAACCG+AGG + chr4.2:48268871-48268890 None:intergenic 50.0%
TGAAACAAGACGGGCACACA+AGG + chr4.2:48269689-48269708 None:intergenic 50.0%
! CATTGGTGTCCGCGAATTTG+AGG - chr4.2:48271057-48271076 MS.gene89993:intron 50.0%
! CCGGTTATGACCACCACTTT+TGG + chr4.2:48267969-48267988 None:intergenic 50.0%
! GTCAGTCCCTCGGTTACTTT+CGG - chr4.2:48268861-48268880 MS.gene89993:CDS 50.0%
! TACTTCGATGGGGAAGTGTG+AGG + chr4.2:48268033-48268052 None:intergenic 50.0%
!! GGTCGGCTGCATCGATTAAA+CGG + chr4.2:48269511-48269530 None:intergenic 50.0%
!! GTTCTAGAATCCACCTGGCA+CGG - chr4.2:48272012-48272031 MS.gene89993:CDS 50.0%
!! TGTGTGCCCGTCTTGTTTCA+AGG - chr4.2:48269689-48269708 MS.gene89993:intron 50.0%
!! TTCTAGAATCCACCTGGCAC+GGG - chr4.2:48272013-48272032 MS.gene89993:CDS 50.0%
!! TTTGATTTTCCGGAGCCGGT+GGG + chr4.2:48267993-48268012 None:intergenic 50.0%
!! TTTTCAAGGACAGGCAGCAG+AGG - chr4.2:48270388-48270407 MS.gene89993:intron 50.0%
!!! TTTTGATTTTCCGGAGCCGG+TGG + chr4.2:48267994-48268013 None:intergenic 50.0%
AAACCCTGGCAGGAAGAGGT+GGG - chr4.2:48270592-48270611 MS.gene89993:intron 55.0%
AATGGCCTGTCGCAAACCTC+TGG + chr4.2:48271041-48271060 None:intergenic 55.0%
AATTCCCACCTCTTCCTGCC+AGG + chr4.2:48270599-48270618 None:intergenic 55.0%
AGAGGTTTGCGACAGGCCAT+TGG - chr4.2:48271040-48271059 MS.gene89993:intron 55.0%
ATTCCCACCTCTTCCTGCCA+GGG + chr4.2:48270598-48270617 None:intergenic 55.0%
CGACCCCACTTACTGGGATA+AGG - chr4.2:48269526-48269545 MS.gene89993:intron 55.0%
GAAGAGGATGCTCAGTCGAC+TGG - chr4.2:48271669-48271688 MS.gene89993:CDS 55.0%
GAGGCCACTGTAGACTTGCA+TGG + chr4.2:48268069-48268088 None:intergenic 55.0%
GGCAGGAAGAGGTGGGAATT+AGG - chr4.2:48270599-48270618 MS.gene89993:intron 55.0%
! AAAATGGTGGGACCCCTTCC+CGG + chr4.2:48269018-48269037 None:intergenic 55.0%
! CCCTCGGTTACTTTCGGACT+AGG - chr4.2:48268867-48268886 MS.gene89993:CDS 55.0%
! GGAAGGGGTCCCACCATTTT+TGG - chr4.2:48269018-48269037 MS.gene89993:CDS 55.0%
! TCTAGAATCCACCTGGCACG+GGG - chr4.2:48272014-48272033 MS.gene89993:CDS 55.0%
! TTGATTTTCCGGAGCCGGTG+GGG + chr4.2:48267992-48268011 None:intergenic 55.0%
!! CCGTCTTGTTTCAAGGTGCC+AGG - chr4.2:48269696-48269715 MS.gene89993:intron 55.0%
ATGCAGCCGACCCCACTTAC+TGG - chr4.2:48269519-48269538 MS.gene89993:intron 60.0%
CAAACCCTGGCAGGAAGAGG+TGG - chr4.2:48270591-48270610 MS.gene89993:intron 60.0%
CTTGTGGCAGGGCAGAAGTG+GGG - chr4.2:48270860-48270879 MS.gene89993:intron 60.0%
GCTTGTGGCAGGGCAGAAGT+GGG - chr4.2:48270859-48270878 MS.gene89993:intron 60.0%
TGCAGCCGACCCCACTTACT+GGG - chr4.2:48269520-48269539 MS.gene89993:intron 60.0%
TGCTTGTGGCAGGGCAGAAG+TGG - chr4.2:48270858-48270877 MS.gene89993:intron 60.0%
! TCCACCTGGCACGGGGTATT+TGG - chr4.2:48272021-48272040 MS.gene89993:CDS 60.0%
CAGGAGACTTGTCCGCCGTC+AGG - chr4.2:48271264-48271283 MS.gene89993:intron 65.0%
CATACGCAGGGTCCGGGAAG+GGG - chr4.2:48269003-48269022 MS.gene89993:CDS 65.0%
CTCCTGCATACGCAGGGTCC+GGG - chr4.2:48268997-48269016 MS.gene89993:CDS 65.0%
CTGACGGCGGACAAGTCTCC+TGG + chr4.2:48271266-48271285 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG - chr4.2:48269002-48269021 MS.gene89993:CDS 65.0%
GCCAAATACCCCGTGCCAGG+TGG + chr4.2:48272025-48272044 None:intergenic 65.0%
GCTCCTGCATACGCAGGGTC+CGG - chr4.2:48268996-48269015 MS.gene89993:CDS 65.0%
GGGGGTAACCTTGGCGCAAC+TGG + chr4.2:48269136-48269155 None:intergenic 65.0%
GTGGTCATAACCGGCCCCAC+CGG - chr4.2:48267975-48267994 MS.gene89993:CDS 65.0%
TGCATACGCAGGGTCCGGGA+AGG - chr4.2:48269001-48269020 MS.gene89993:CDS 65.0%
TTCCCGGACCCTGCGTATGC+AGG + chr4.2:48269002-48269021 None:intergenic 65.0%
GGGGCCAAATACCCCGTGCC+AGG + chr4.2:48272028-48272047 None:intergenic 70.0%
! TTTTCCGGAGCCGGTGGGGC+CGG + chr4.2:48267988-48268007 None:intergenic 70.0%
!! ATAACCGGCCCCACCGGCTC+CGG - chr4.2:48267981-48268000 MS.gene89993:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 48267918 48272062 48267918 ID=MS.gene89993
chr4.2 mRNA 48267918 48272062 48267918 ID=MS.gene89993.t1;Parent=MS.gene89993
chr4.2 exon 48271772 48272062 48271772 ID=MS.gene89993.t1.exon1;Parent=MS.gene89993.t1
chr4.2 CDS 48271772 48272062 48271772 ID=cds.MS.gene89993.t1;Parent=MS.gene89993.t1
chr4.2 exon 48271621 48271689 48271621 ID=MS.gene89993.t1.exon2;Parent=MS.gene89993.t1
chr4.2 CDS 48271621 48271689 48271621 ID=cds.MS.gene89993.t1;Parent=MS.gene89993.t1
chr4.2 exon 48270137 48270209 48270137 ID=MS.gene89993.t1.exon3;Parent=MS.gene89993.t1
chr4.2 CDS 48270137 48270209 48270137 ID=cds.MS.gene89993.t1;Parent=MS.gene89993.t1
chr4.2 exon 48269936 48270048 48269936 ID=MS.gene89993.t1.exon4;Parent=MS.gene89993.t1
chr4.2 CDS 48269936 48270048 48269936 ID=cds.MS.gene89993.t1;Parent=MS.gene89993.t1
chr4.2 exon 48269571 48269645 48269571 ID=MS.gene89993.t1.exon5;Parent=MS.gene89993.t1
chr4.2 CDS 48269571 48269645 48269571 ID=cds.MS.gene89993.t1;Parent=MS.gene89993.t1
chr4.2 exon 48268695 48269105 48268695 ID=MS.gene89993.t1.exon6;Parent=MS.gene89993.t1
chr4.2 CDS 48268695 48269105 48268695 ID=cds.MS.gene89993.t1;Parent=MS.gene89993.t1
chr4.2 exon 48268235 48268310 48268235 ID=MS.gene89993.t1.exon7;Parent=MS.gene89993.t1
chr4.2 CDS 48268235 48268310 48268235 ID=cds.MS.gene89993.t1;Parent=MS.gene89993.t1
chr4.2 exon 48267918 48268141 48267918 ID=MS.gene89993.t1.exon8;Parent=MS.gene89993.t1
chr4.2 CDS 48267918 48268141 48267918 ID=cds.MS.gene89993.t1;Parent=MS.gene89993.t1
Gene Sequence

>MS.gene89993

ATGACGACGGAGAACACCGCAACAATAAACCCTACCCACCCAAAACAACCAAAAGTGGTGGTCATAACCGGCCCCACCGGCTCCGGAAAATCAAAACTCGCCGTCGATTTATCCTCACACTTCCCCATCGAAGTAATCAACGCTGATTCCATGCAAGTCTACAGTGGCCTCGATATTCTCACCAACAAACTCCCCTTCTCTGAACAAAACGGTGTGTTGCATCATCTATTGGGTAGTGTGAATCCGAATTTGGAATTCACTGCTAAAACTTTTCGTGATTCTGCTATTCCCGTAAGTTCCAAAGCTCATATAAGATTTTATTTTGAATTTTAGTTGATTAATCAATAATTAATATTTGTTTTTGTTTTTTCAGATTATTGATGAAATATTGTCTCGTAATCACTTACCTGTTATTGTTGGTGGAACTAATTACTATATTCAGGTGCGAATTTCAGGATTTTGAATTTTGAATCAATCCCATTCCACGTGCATTACTGCATTTCTATACCTTCAATTTACTATTTAGTATCCATGCAATCAGAACTATAGAAAACTATAATCAATAATTACTAACATTTGTCATTTAAATTTTGAGGAATGATATTTTGACATCCATTTTTCAACAACTTTTTAGGGACAACCTTTTTCCTCCATTCTTATTGGACAATAACAATAGAGAGAGAAAAAGGAAGAGAGAGAATAATGGTATAATGAGAGTATGAAAAAGAGTTGTCACAAAAGTTGTTGAAAATTGGTTGTCAAAATATCATTCCTCTTAAATTTTTGTATACAGTGACAGTGTAAAACATTTTTGCATCCAATTAAATTACTCCATGATGCAACCTTTTAAAGTTAGTTCCTAAAATATCTATTTGGCATGGTTTGATCGGATGCATGTGCAATAAAGGTTTCCACTGTCAGTTCATAGAAATTAATCTCATTCGTCAGTCCCTCGGTTACTTTCGGACTAGGAGTGATAGTTAAGAGATTAGTTTGATAGATTAATTATAGTTTAAAGACTAGTCAATTAGTTGTTATCGCGTAGCATAATAAAAAAAGGGCAACCCAGTGCATTAAAGCTCCTGCATACGCAGGGTCCGGGAAGGGGTCCCACCATTTTTGGTGTATTGTACGCAGCCTTACCCTGTTTTTTACACAAGAGGTTGTTTCGAGGACTTGAACCCGTGACCTTTCAGTCACATGACAACAACTTTACCAGTTGCGCCAAGGTTACCCCCTTTTATCGCGTAGCATAATATATGAACAAATTGCTATTGTTAAGCGATGCGCTATTTAGTATAAACTACTAAATGTTGTAAAAAATAGCTGCTATTGTAGCTCTATAGCTTTGTAGCACAGTGGAAATTTGAACAAATCTCTGTTTTCCGCTTTATGCGATTGACAACATTGCAAATAGGAGATAGTTTGGTGACCAAATTCAATGTTTAGTGGCTATGTTTGAGTTTAACTATTTTTCAATGATATATATATATTTTTTATCCAACTATAAGAGAAACTGTTAAAAAAGATCTACAGATTAATGAGTTGAATAGAGATATCAAATATAGTATACAATAGAATATTATCGCACCGTTTAATCGATGCAGCCGACCCCACTTACTGGGATAAGGATTGGTTGTTGTTGTTGACATCATAGTGACATATTATTATTGTATACATGTGTTCAACTTTACTTTTTGTTGATAGCTATTGAAGTCTGTTATTTTTATCTTGCAATATAATGTATTTTCTCATCCGTTTTTCTTATCCTTGTGTGCCCGTCTTGTTTCAAGGTGCCAGGTTCTATTTTTTATTTCTAATACACTGACACTTCTCCCTGTTATGCTCTTCAGGCTCTTGTGAGTCAGTTTCTGCTAGATGACTCGACGGACGATTTGAGTGAAAGCTATTTGGGTGACTCACCTGGTAAACTGCTATTCTGTTCTCTAACTTTTCACATAGTTCAATTAGTGTATACTTAGCTTCTATATTTGTAATTTTGTATGCATCACAGGGTATAATAATAATTTTGTTGCTGAGAACGATACTTCAAGCAACAGTTATGATTTGCTTAAAGATATTGATCCAGTTGCAGCAAATAGAATCCATCCAAATAACCATAGAAAGGTCAGATGAGTAATTTCATTATTTTCTTCTTCTTGAGACAGTGTGTACAAAAGGCCATCTTATATTCATACAGTTAGAGTTATATACAACAGTTACTGCATGCATAAAATTGTAACTTTAATGTTTATGATTTTAAGGGAAGTTTTTGAAGTTCTGACTTCTGACATACAATACTTCTATTAGAAGCATTATGCACTTTCAATTAATTTCTGAGGCGAGCTTTTCAGTTATTTGAATTTCTTAACCGGGGATGGCATATTTACACGTGACATTAATATTTTCGTTTTCAGATAAATCAATACATTAGTTTGTACTCTCGAACTGGTGTTCTTCCCAGCAAAGTTTTTCAAGGACAGGCAGCAGAGGTTTGTTATCTTCTTTGGCATTCATGGACTAATTGCTAAGTCACTATAAACTCTTTTCCCTTATATGGGATTTGTTTCAAGGTGTATAATTATAATGATTTTCTTGGAAATGCCATTCCAAGGAAAATTCAAAAACTTGTTTGGTATATATTTAATATTTAAAGGAATATTTTTTAAAATTCAAACCCTGGCAGGAAGAGGTGGGAATTAGGAATTGAGTATATGTTTTAGTATAACATTATAACTTCCATTCTCATTCCCTCAAAAAAAAAAACTTCCATTCTCATGTAAGTGGAAAGAAGACACTCACTCTCATCACGAGAATAAAAATGAAGACATGGGAATGTCACGTCCCTTAGAATCAATGCTTTAGAAAATATTTAAGTTTGTATCAATCATGATAATGCCAGTTCAGTCTTTTTTCTTGTCTTTTAAATAATGTTGGTTTTGCTTGTGGCAGGGCAGAAGTGGGGTCAAGCTGATAATTTAAGATATGATTGTTGTTTTATAAGTGTGGACGCATCTCTCCCAGTGCTAGATAGATATGTAGAGCAGAGGGTAGATCACATGATGGATGCAGGATTACTCAACGAAGTCTATGACATTTACACTATGAATGCAGATTATACCAGAGGTTTGCGACAGGCCATTGGTGTCCGCGAATTTGAGGATCTTCTAAGAACTAGTGTTTTCAAAAACAAAAATCAAAGAGAGGGGAAAATAATTGAGGGATCAAGCGTAGAAAATAGTGAGCCATTGTTTGATGGTAATTTGTTGGAGTGGTTGAGATCTTCCCCTGATACTAAATCTACAACTCTTTTGGAAGAAGCAATTGAGAAAGTAAAGGTTAATACCAGGAGACTTGTCCGCCGTCAGGTAAAACCGTAAAACTAATGTCATTTGTTCCATGACTTTCTGAAGCAATCATTATTTACAGAACATTTCTTTTGGTTAGATATGCAATGGAACTGCAAATGAGTCATTTTTCTGATTAATCTGACAACATATAATAAAAAATCACTTTAAATGCTTCATCTATAGGACAATTATTTTGGATGGGAGCTTGCACAATATTGGCATTTTTGTTTTTGGGTCTACATGATTCAGTTTATCAATTTTAGAATTAGCATCAGTTTTCTTTTGTTCTGTCTAAAATTTTGTTCTCGATCTGTAATGGAGCATGTTGTTGCTAAATACCATGCTAGTTTGAAGAAATATATTTGAAGTCTAAGATTGATATTGAAGTTTTGTTCATGACAGAAGAGGATGCTCAGTCGACTGGAAACATTGTTTGGTTGGGACATACACTATGTTGATTCCACGGAATCAATATTAAGTAAGCCATCTCAATCTTGTAAATTTTCTGTTTATATCTTTTCATGAATTAACTTTTAGAATTATCTATTGATTTGGATATTCTATATTTTAGGCAAATCAAATGAAGTATGGAATAGACAAGTGGTGGAATCAGCCACAAAGATAGTAACAACATTCCTGAGTGAGAATGGAAGCTTGTCGTCAACCTTTGGGATGTCAAATGGCACTGGGACGAAAATAATCCAAAGGGACCTCTGGACTCAATACACATGCAAGGTCTGCTATGTTCTAGAATCCACCTGGCACGGGGTATTTGGCCCCTTCTGTTTCAGATAG
Protein sequence

>MS.gene89993.t1

MTTENTATINPTHPKQPKVVVITGPTGSGKSKLAVDLSSHFPIEVINADSMQVYSGLDILTNKLPFSEQNGVLHHLLGSVNPNLEFTAKTFRDSAIPIIDEILSRNHLPVIVGGTNYYIQALVSQFLLDDSTDDLSESYLGDSPGYNNNFVAENDTSSNSYDLLKDIDPVAANRIHPNNHRKINQYISLYSRTGVLPSKVFQGQAAEKWGQADNLRYDCCFISVDASLPVLDRYVEQRVDHMMDAGLLNEVYDIYTMNADYTRGLRQAIGVREFEDLLRTSVFKNKNQREGKIIEGSSVENSEPLFDGNLLEWLRSSPDTKSTTLLEEAIEKVKVNTRRLVRRQKRMLSRLETLFGWDIHYVDSTESILSKSNEVWNRQVVESATKIVTTFLSENGSLSSTFGMSNGTGTKIIQRDLWTQYTCKVCYVLESTWHGVFGPFCFR