Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90642.t1 | RHN77572.1 | 94.7 | 378 | 11 | 2 | 1 | 378 | 1 | 369 | 2.70E-199 | 704.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90642.t1 | Q8RXK2 | 50.1 | 373 | 167 | 5 | 1 | 362 | 1 | 365 | 8.2e-96 | 352.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90642.t1 | A0A072VF22 | 94.7 | 378 | 11 | 2 | 1 | 378 | 1 | 369 | 2.0e-199 | 704.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene90642 | 0.824596 | 7.41E-54 | -1.69E-46 |
| MS.gene049159 | MS.gene90642 | 0.805869 | 1.08E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene90642 | 0.810673 | 1.03E-50 | -1.69E-46 |
| MS.gene050759 | MS.gene90642 | 0.805537 | 1.27E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene90642 | 0.810632 | 1.05E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene90642 | 0.818212 | 2.21E-52 | -1.69E-46 |
| MS.gene051279 | MS.gene90642 | 0.807464 | 4.99E-50 | -1.69E-46 |
| MS.gene051332 | MS.gene90642 | 0.8023 | 5.99E-49 | -1.69E-46 |
| MS.gene051490 | MS.gene90642 | 0.807945 | 3.95E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene90642 | 0.858291 | 9.11E-63 | -1.69E-46 |
| MS.gene051790 | MS.gene90642 | 0.803127 | 4.04E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene90642 | 0.800594 | 1.34E-48 | -1.69E-46 |
| MS.gene052582 | MS.gene90642 | 0.840713 | 7.37E-58 | -1.69E-46 |
| MS.gene052584 | MS.gene90642 | 0.831455 | 1.65E-55 | -1.69E-46 |
| MS.gene052609 | MS.gene90642 | 0.818081 | 2.36E-52 | -1.69E-46 |
| MS.gene052681 | MS.gene90642 | 0.809941 | 1.47E-50 | -1.69E-46 |
| MS.gene05315 | MS.gene90642 | 0.805828 | 1.11E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene90642 | 0.860597 | 1.85E-63 | -1.69E-46 |
| MS.gene054576 | MS.gene90642 | 0.839685 | 1.37E-57 | -1.69E-46 |
| MS.gene054651 | MS.gene90642 | 0.800177 | 1.63E-48 | -1.69E-46 |
| MS.gene054775 | MS.gene90642 | 0.802603 | 5.19E-49 | -1.69E-46 |
| MS.gene055313 | MS.gene90642 | 0.803206 | 3.89E-49 | -1.69E-46 |
| MS.gene055469 | MS.gene90642 | 0.816289 | 5.97E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene90642 | 0.843493 | 1.35E-58 | -1.69E-46 |
| MS.gene055778 | MS.gene90642 | 0.805303 | 1.42E-49 | -1.69E-46 |
| MS.gene055864 | MS.gene90642 | 0.810853 | 9.37E-51 | -1.69E-46 |
| MS.gene056045 | MS.gene90642 | 0.800294 | 1.54E-48 | -1.69E-46 |
| MS.gene056308 | MS.gene90642 | 0.801685 | 8.01E-49 | -1.69E-46 |
| MS.gene056403 | MS.gene90642 | 0.848838 | 4.75E-60 | -1.69E-46 |
| MS.gene056507 | MS.gene90642 | 0.83294 | 7.09E-56 | -1.69E-46 |
| MS.gene056605 | MS.gene90642 | 0.841888 | 3.62E-58 | -1.69E-46 |
| MS.gene05686 | MS.gene90642 | 0.806603 | 7.59E-50 | -1.69E-46 |
| MS.gene05689 | MS.gene90642 | 0.82185 | 3.24E-53 | -1.69E-46 |
| MS.gene056973 | MS.gene90642 | 0.801332 | 9.47E-49 | -1.69E-46 |
| MS.gene057034 | MS.gene90642 | 0.812302 | 4.54E-51 | -1.69E-46 |
| MS.gene057360 | MS.gene90642 | 0.815225 | 1.03E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene90642 | 0.807721 | 4.40E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene90642 | 0.842347 | 2.73E-58 | -1.69E-46 |
| MS.gene058289 | MS.gene90642 | 0.827724 | 1.34E-54 | -1.69E-46 |
| MS.gene058668 | MS.gene90642 | 0.833316 | 5.72E-56 | -1.69E-46 |
| MS.gene059331 | MS.gene90642 | 0.802466 | 5.54E-49 | -1.69E-46 |
| MS.gene059335 | MS.gene90642 | 0.808374 | 3.20E-50 | -1.69E-46 |
| MS.gene059725 | MS.gene90642 | 0.825771 | 3.91E-54 | -1.69E-46 |
| MS.gene060167 | MS.gene90642 | 0.801509 | 8.71E-49 | -1.69E-46 |
| MS.gene060637 | MS.gene90642 | 0.800774 | 1.23E-48 | -1.69E-46 |
| MS.gene060933 | MS.gene90642 | 0.805834 | 1.10E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90642.t1 | MTR_1g023955 | 94.709 | 378 | 11 | 2 | 1 | 378 | 1 | 369 | 0.0 | 738 |
| MS.gene90642.t1 | MTR_1g423960 | 96.000 | 100 | 4 | 0 | 1 | 100 | 1 | 100 | 6.95e-65 | 202 |
| MS.gene90642.t1 | MTR_1g029410 | 43.713 | 167 | 84 | 3 | 142 | 308 | 255 | 411 | 1.85e-31 | 124 |
| MS.gene90642.t1 | MTR_1g029410 | 43.713 | 167 | 84 | 3 | 142 | 308 | 218 | 374 | 7.27e-31 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90642.t1 | AT5G67240 | 50.134 | 373 | 167 | 5 | 1 | 362 | 1 | 365 | 3.76e-124 | 368 |
| MS.gene90642.t1 | AT5G67240 | 50.134 | 373 | 167 | 5 | 1 | 362 | 1 | 365 | 6.82e-123 | 369 |
| MS.gene90642.t1 | AT5G67240 | 50.134 | 373 | 167 | 5 | 1 | 362 | 1 | 365 | 2.19e-122 | 368 |
| MS.gene90642.t1 | AT5G67240 | 50.134 | 373 | 167 | 5 | 1 | 362 | 1 | 365 | 4.15e-121 | 369 |
| MS.gene90642.t1 | AT3G50100 | 47.520 | 383 | 175 | 8 | 1 | 377 | 1 | 363 | 1.08e-112 | 335 |
| MS.gene90642.t1 | AT5G05540 | 44.271 | 384 | 194 | 7 | 1 | 377 | 1 | 371 | 1.05e-94 | 291 |
| MS.gene90642.t1 | AT5G05540 | 45.125 | 359 | 177 | 7 | 1 | 352 | 1 | 346 | 1.16e-90 | 277 |
| MS.gene90642.t1 | AT3G50100 | 47.857 | 280 | 127 | 5 | 102 | 377 | 2 | 266 | 5.39e-82 | 253 |
| MS.gene90642.t1 | AT3G50090 | 42.333 | 300 | 137 | 7 | 82 | 373 | 12 | 283 | 4.35e-63 | 205 |
| MS.gene90642.t1 | AT5G25800 | 39.665 | 179 | 98 | 3 | 142 | 320 | 217 | 385 | 2.50e-26 | 111 |
| MS.gene90642.t1 | AT5G25800 | 39.665 | 179 | 98 | 3 | 142 | 320 | 215 | 383 | 2.55e-26 | 110 |
| MS.gene90642.t1 | AT3G15080 | 34.911 | 169 | 83 | 10 | 140 | 300 | 81 | 230 | 1.33e-12 | 68.2 |
| MS.gene90642.t1 | AT3G27970 | 32.323 | 198 | 102 | 11 | 138 | 316 | 131 | 315 | 3.72e-12 | 67.4 |
| MS.gene90642.t1 | AT5G40310 | 31.667 | 180 | 94 | 8 | 138 | 300 | 131 | 298 | 8.15e-11 | 63.5 |
| MS.gene90642.t1 | AT5G40310 | 31.667 | 180 | 94 | 8 | 138 | 300 | 122 | 289 | 9.27e-11 | 63.2 |
Find 82 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATCTCCTTGACCGTTTC+TGG | 0.065636 | 1.1:+1053787 | None:intergenic |
| ATCTTTGTAACAGTCTGTTT+TGG | 0.204642 | 1.1:-1054349 | MS.gene90642:intron |
| GGCTCTTGAACCAATGTTAA+TGG | 0.248346 | 1.1:+1054219 | None:intergenic |
| GAAAGGCATGAAGGGTAAAA+TGG | 0.250069 | 1.1:-1057690 | MS.gene90642:CDS |
| GGGCTATGAAGTTCGGAAAA+AGG | 0.268806 | 1.1:-1054328 | MS.gene90642:CDS |
| GTTGGTTGATATTGTAAAAT+TGG | 0.270086 | 1.1:-1057720 | MS.gene90642:CDS |
| AAAGAGGTCCCATGAGGTTT+TGG | 0.280323 | 1.1:-1057603 | MS.gene90642:CDS |
| AGTGATAAACCTTAAGAAAA+AGG | 0.280502 | 1.1:-1055417 | MS.gene90642:CDS |
| TAAACTGTGTCCAACTAATA+TGG | 0.306541 | 1.1:+1054906 | None:intergenic |
| TGAACCAATGTTAATGGAAA+TGG | 0.321470 | 1.1:+1054225 | None:intergenic |
| ATTGTATATGTACCTTTGTT+TGG | 0.351180 | 1.1:+1053697 | None:intergenic |
| TGTGGTAGATCTTATCCCTT+TGG | 0.364944 | 1.1:+1055394 | None:intergenic |
| GTACCTTTGTTTGGCTGCCT+TGG | 0.368463 | 1.1:+1053706 | None:intergenic |
| GCACTACACGAAATTGTTCC+TGG | 0.385982 | 1.1:-1054029 | MS.gene90642:CDS |
| TAACAAACCTTATCAATAGA+TGG | 0.392009 | 1.1:+1056556 | None:intergenic |
| TTCGTTGCCATCTATTGATA+AGG | 0.396493 | 1.1:-1056563 | MS.gene90642:intron |
| ATTACACAAACTTGTTAAAC+CGG | 0.400307 | 1.1:-1055129 | MS.gene90642:CDS |
| ACCTCATGGGACCTCTTTGA+TGG | 0.405801 | 1.1:+1057608 | None:intergenic |
| TTCGTTGAATAGTTTGTGTC+AGG | 0.407721 | 1.1:-1054659 | MS.gene90642:intron |
| TCCAATGGAACCATATTAGT+TGG | 0.408073 | 1.1:-1054916 | MS.gene90642:CDS |
| TTATGAAAACATACCTGCTC+AGG | 0.413500 | 1.1:+1057343 | None:intergenic |
| TGTTGTAGATCACAATTTAG+AGG | 0.418558 | 1.1:-1055306 | MS.gene90642:intron |
| GACTACAAAACAGAGATTAC+TGG | 0.429986 | 1.1:-1055092 | MS.gene90642:CDS |
| TAGGGTGCTGGAGAGTTACT+TGG | 0.466593 | 1.1:+1056602 | None:intergenic |
| TTGCTTCAGCCTTCCAGAAA+CGG | 0.466691 | 1.1:-1053800 | MS.gene90642:intron |
| TGCATACATCTTCCAACCCT+TGG | 0.468589 | 1.1:-1054704 | MS.gene90642:CDS |
| AAAGGCATGAAGGGTAAAAT+GGG | 0.471068 | 1.1:-1057689 | MS.gene90642:CDS |
| TCCAACTAATATGGTTCCAT+TGG | 0.471919 | 1.1:+1054915 | None:intergenic |
| GGTTGCTGTTGATTGTGAAA+TGG | 0.476220 | 1.1:-1055369 | MS.gene90642:CDS |
| TGAAGATGGGACTGAAGCTT+TGG | 0.477204 | 1.1:-1055339 | MS.gene90642:CDS |
| TAGTCTTTGATTGCTTTCTC+CGG | 0.480451 | 1.1:+1055110 | None:intergenic |
| CTCAACGGATGAGGATTTGA+AGG | 0.485414 | 1.1:-1057561 | MS.gene90642:intron |
| GAATAATCCATTGGATACAT+AGG | 0.485454 | 1.1:+1056583 | None:intergenic |
| TTGCTCCTTAGCTGATATAC+AGG | 0.488234 | 1.1:-1055039 | MS.gene90642:intron |
| GCTTCAGTGTTCACAGTGGT+TGG | 0.489845 | 1.1:+1054050 | None:intergenic |
| GTAAAATTGGTACAAAAGAA+AGG | 0.490743 | 1.1:-1057707 | MS.gene90642:CDS |
| CGATCTATTGTGAAGTCCCC+AGG | 0.493552 | 1.1:+1054011 | None:intergenic |
| GATTGACACCGCGGAAAAGA+AGG | 0.505994 | 1.1:-1058847 | MS.gene90642:intron |
| CACTACACGAAATTGTTCCT+GGG | 0.507092 | 1.1:-1054028 | MS.gene90642:CDS |
| ATCTCACGATTCCCCTGAGC+AGG | 0.509513 | 1.1:-1057356 | MS.gene90642:intron |
| GGGTAAAATGGGAGACTGGA+AGG | 0.511985 | 1.1:-1057678 | MS.gene90642:CDS |
| AAAGACATTCTCAACGGATG+AGG | 0.517939 | 1.1:-1057570 | MS.gene90642:CDS |
| ATGAAGAAGTTGTTATCCAA+TGG | 0.538388 | 1.1:-1054931 | MS.gene90642:CDS |
| CCTTGGATGGCTCTATTCAC+AGG | 0.539512 | 1.1:-1054687 | MS.gene90642:CDS |
| GAAATGGTTCTCTGTGAAGA+TGG | 0.540693 | 1.1:-1055353 | MS.gene90642:CDS |
| CCATTGGATACATAGGGTGC+TGG | 0.541606 | 1.1:+1056590 | None:intergenic |
| GAAATGCAGCCAAAACCTCA+TGG | 0.548328 | 1.1:+1057594 | None:intergenic |
| GGTACAAAAGAAAGGCATGA+AGG | 0.548788 | 1.1:-1057699 | MS.gene90642:CDS |
| TAAGCCATTTCCATTAACAT+TGG | 0.550774 | 1.1:-1054229 | MS.gene90642:CDS |
| AATAATCCATTGGATACATA+GGG | 0.550785 | 1.1:+1056584 | None:intergenic |
| TCTCCTTGACCGTTTCTGGA+AGG | 0.551707 | 1.1:+1053791 | None:intergenic |
| CCAGCACCCTATGTATCCAA+TGG | 0.559697 | 1.1:-1056590 | MS.gene90642:CDS |
| TGAAGGGTAAAATGGGAGAC+TGG | 0.560598 | 1.1:-1057682 | MS.gene90642:CDS |
| TACATCTTCCAACCCTTGGA+TGG | 0.561701 | 1.1:-1054700 | MS.gene90642:CDS |
| GATGGCAACGAATAATCCAT+TGG | 0.567685 | 1.1:+1056574 | None:intergenic |
| GAATAGAGCCATCCAAGGGT+TGG | 0.573837 | 1.1:+1054692 | None:intergenic |
| ATGCATCATGTGCCTCTCGT+TGG | 0.582171 | 1.1:+1053739 | None:intergenic |
| GTACAAAAGAAAGGCATGAA+GGG | 0.582899 | 1.1:-1057698 | MS.gene90642:CDS |
| AATTACCTGTATATCAGCTA+AGG | 0.584653 | 1.1:+1055034 | None:intergenic |
| TATGAAAACATACCTGCTCA+GGG | 0.585900 | 1.1:+1057344 | None:intergenic |
| AAATGGTTCTCTGTGAAGAT+GGG | 0.588526 | 1.1:-1055352 | MS.gene90642:CDS |
| AAATGCAGCCAAAACCTCAT+GGG | 0.595175 | 1.1:+1057595 | None:intergenic |
| TTAGGTTTCAGAAAGTGAGA+TGG | 0.598092 | 1.1:-1054096 | MS.gene90642:intron |
| CAGCCTTCCAGAAACGGTCA+AGG | 0.607612 | 1.1:-1053794 | MS.gene90642:CDS |
| TGTCCAAGGCAGCCAAACAA+AGG | 0.611407 | 1.1:-1053709 | None:intergenic |
| GATGCATATGAAAATGTCCA+AGG | 0.619700 | 1.1:-1053723 | MS.gene90642:CDS |
| GGACTTCACAATAGATCGAA+AGG | 0.623377 | 1.1:-1054006 | MS.gene90642:intron |
| CCTGTGAATAGAGCCATCCA+AGG | 0.624216 | 1.1:+1054687 | None:intergenic |
| GTTCTTGCAAAGATCAAACA+TGG | 0.630093 | 1.1:-1054258 | MS.gene90642:CDS |
| ATTTCTAAAGACATTCTCAA+CGG | 0.633013 | 1.1:-1057576 | MS.gene90642:CDS |
| GAAGCTTGATTATGTTAGAG+TGG | 0.657464 | 1.1:-1054734 | MS.gene90642:CDS |
| CTGTGAATAGAGCCATCCAA+GGG | 0.666796 | 1.1:+1054688 | None:intergenic |
| ACAATCAACAGCAACCATTG+TGG | 0.670727 | 1.1:+1055376 | None:intergenic |
| ACTACACGAAATTGTTCCTG+GGG | 0.691492 | 1.1:-1054027 | MS.gene90642:CDS |
| TGACACAAACTATTCAACGA+AGG | 0.706014 | 1.1:+1054661 | None:intergenic |
| AGGGATAAGATCTACCACAA+TGG | 0.714725 | 1.1:-1055390 | MS.gene90642:CDS |
| TCCATCAAAGAGGTCCCATG+AGG | 0.716207 | 1.1:-1057609 | MS.gene90642:CDS |
| ATGAAAACATACCTGCTCAG+GGG | 0.723649 | 1.1:+1057345 | None:intergenic |
| GGATGAGAAGATTGACACCG+CGG | 0.723985 | 1.1:-1058856 | MS.gene90642:CDS |
| GTATGAGCGATCCATCAAAG+AGG | 0.733411 | 1.1:-1057619 | MS.gene90642:CDS |
| TAGTGCTTCAGTGTTCACAG+TGG | 0.786374 | 1.1:+1054046 | None:intergenic |
| AGTTTATATAATGATCTACG+TGG | 0.789260 | 1.1:-1054889 | MS.gene90642:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATTAAATTTTATAA+TGG | - | chr1.1:1055530-1055549 | MS.gene90642:intron | 0.0% |
| !! | AAAAAAAAAATCTATAGATA+TGG | + | chr1.1:1056633-1056652 | None:intergenic | 10.0% |
| !! | AATAATAAATTGTATATCTT+TGG | + | chr1.1:1056807-1056826 | None:intergenic | 10.0% |
| !! | ATTTGTAAAAATTATAACAA+TGG | + | chr1.1:1055618-1055637 | None:intergenic | 10.0% |
| !! | AAATTCCTGAAAAAAAAATA+AGG | + | chr1.1:1056584-1056603 | None:intergenic | 15.0% |
| !! | AACAATAAATATTAGGAAAA+TGG | - | chr1.1:1056757-1056776 | MS.gene90642:intron | 15.0% |
| !! | AACAGTAATGATAAAAAATA+TGG | - | chr1.1:1054921-1054940 | MS.gene90642:CDS | 15.0% |
| !! | AATTCCTGAAAAAAAAATAA+GGG | + | chr1.1:1056583-1056602 | None:intergenic | 15.0% |
| !! | ACAATAAATATTAGGAAAAT+GGG | - | chr1.1:1056758-1056777 | MS.gene90642:intron | 15.0% |
| !! | ACAGTAATGATAAAAAATAT+GGG | - | chr1.1:1054922-1054941 | MS.gene90642:CDS | 15.0% |
| !! | TAAAAAAGCTAAAAAAAACA+TGG | - | chr1.1:1056289-1056308 | MS.gene90642:intron | 15.0% |
| !! | TAGAAATACTTATCAATTAT+TGG | + | chr1.1:1055369-1055388 | None:intergenic | 15.0% |
| !! | TGCAATTAACAATAAATATT+AGG | - | chr1.1:1056750-1056769 | MS.gene90642:intron | 15.0% |
| !! | TTAGTTAATTTATTTAGTGA+TGG | - | chr1.1:1057019-1057038 | MS.gene90642:intron | 15.0% |
| !!! | ATTTTAAAGATAATGCATAA+AGG | + | chr1.1:1055587-1055606 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTAATAAAGCTTA+TGG | - | chr1.1:1056316-1056335 | MS.gene90642:intron | 15.0% |
| !!! | TGTTTATTTTATTCTCATAT+TGG | + | chr1.1:1053858-1053877 | None:intergenic | 15.0% |
| !! | AAAATTATAACAATGGAACT+AGG | + | chr1.1:1055611-1055630 | None:intergenic | 20.0% |
| !! | AAAGCAAATCATATAGTAAA+AGG | + | chr1.1:1057001-1057020 | None:intergenic | 20.0% |
| !! | AAATAGTCATAAATATGTCA+AGG | - | chr1.1:1056145-1056164 | MS.gene90642:intron | 20.0% |
| !! | AAATATTGATAGATATGGAA+TGG | - | chr1.1:1056850-1056869 | MS.gene90642:intron | 20.0% |
| !! | AAATTATAACAATGGAACTA+GGG | + | chr1.1:1055610-1055629 | None:intergenic | 20.0% |
| !! | AATCTAATCAAGCAATAAAA+TGG | + | chr1.1:1053819-1053838 | None:intergenic | 20.0% |
| !! | ATCTAATCAAGCAATAAAAT+GGG | + | chr1.1:1053818-1053837 | None:intergenic | 20.0% |
| !! | CATATCTATCAATATTTAAG+AGG | + | chr1.1:1056847-1056866 | None:intergenic | 20.0% |
| !! | CATTTCAAAAACAAAACAAA+AGG | + | chr1.1:1054064-1054083 | None:intergenic | 20.0% |
| !! | CTCTTAAATATTGATAGATA+TGG | - | chr1.1:1056845-1056864 | MS.gene90642:intron | 20.0% |
| !! | GGTATAATAAATGTCAATAA+AGG | - | chr1.1:1054653-1054672 | MS.gene90642:intron | 20.0% |
| !! | TCATGTTATTCCAATAATTA+CGG | + | chr1.1:1058643-1058662 | None:intergenic | 20.0% |
| !! | TGAGAATAAAATAAACATAG+CGG | - | chr1.1:1053861-1053880 | MS.gene90642:intron | 20.0% |
| !! | TGTAAATTATTAGTCATACA+AGG | - | chr1.1:1057071-1057090 | MS.gene90642:intron | 20.0% |
| !! | TTTCATAATGATTGTTATGT+TGG | - | chr1.1:1055240-1055259 | MS.gene90642:intron | 20.0% |
| !!! | AAAAGACCATGTTTTTTTTA+AGG | + | chr1.1:1056239-1056258 | None:intergenic | 20.0% |
| !!! | ACATTAAAGTATTAGTTTCT+GGG | + | chr1.1:1054820-1054839 | None:intergenic | 20.0% |
| !!! | ATTAACTTTATCTTTAGGAA+AGG | + | chr1.1:1055088-1055107 | None:intergenic | 20.0% |
| !!! | ATTGAAATTACTTTTTCGTA+CGG | - | chr1.1:1056399-1056418 | MS.gene90642:intron | 20.0% |
| !!! | ATTTCAAGATTTTCTACTAT+GGG | + | chr1.1:1053957-1053976 | None:intergenic | 20.0% |
| !!! | ATTTTGGATAATCATATATC+AGG | - | chr1.1:1054619-1054638 | MS.gene90642:intron | 20.0% |
| !!! | ATTTTTTATCATTACTGTTC+AGG | + | chr1.1:1054920-1054939 | None:intergenic | 20.0% |
| !!! | TGCATTCATTTGAATATTTT+AGG | - | chr1.1:1054233-1054252 | MS.gene90642:CDS | 20.0% |
| !!! | TTTTGGATAATCATATATCA+GGG | - | chr1.1:1054620-1054639 | MS.gene90642:intron | 20.0% |
| !!! | TTTTTTTTTGAAGGATAACA+TGG | - | chr1.1:1056257-1056276 | MS.gene90642:intron | 20.0% |
| ! | AACTAATAATGAAAAAGTGG+CGG | + | chr1.1:1055556-1055575 | None:intergenic | 25.0% |
| ! | AATAATCCATTGGATACATA+GGG | + | chr1.1:1055987-1056006 | None:intergenic | 25.0% |
| ! | AATGATAAAAAATATGGGTC+AGG | - | chr1.1:1054927-1054946 | MS.gene90642:CDS | 25.0% |
| ! | AATTGCATTATAGATTGCTA+AGG | + | chr1.1:1056737-1056756 | None:intergenic | 25.0% |
| ! | ACTAATACTTTAATGTGCAT+AGG | - | chr1.1:1054824-1054843 | MS.gene90642:intron | 25.0% |
| ! | AGAATAAAATAAACATAGCG+GGG | - | chr1.1:1053863-1053882 | MS.gene90642:intron | 25.0% |
| ! | AGTGATAAACCTTAAGAAAA+AGG | - | chr1.1:1057151-1057170 | MS.gene90642:intron | 25.0% |
| ! | AGTTTATATAATGATCTACG+TGG | - | chr1.1:1057679-1057698 | MS.gene90642:CDS | 25.0% |
| ! | ATATATCAGGGAAAAAACTA+GGG | - | chr1.1:1054632-1054651 | MS.gene90642:intron | 25.0% |
| ! | ATTTGCTTCTTTGTTCTATT+CGG | - | chr1.1:1053780-1053799 | MS.gene90642:CDS | 25.0% |
| ! | CAGAAAGTAATATTAGAAGA+TGG | + | chr1.1:1055781-1055800 | None:intergenic | 25.0% |
| ! | CTCGTAAAATATAGAAAAGA+TGG | + | chr1.1:1055292-1055311 | None:intergenic | 25.0% |
| ! | CTGGTAAAATATAGAAAAGA+TGG | + | chr1.1:1055338-1055357 | None:intergenic | 25.0% |
| ! | GAAAATAACACAGAAAAAAG+TGG | - | chr1.1:1056212-1056231 | MS.gene90642:intron | 25.0% |
| ! | GAGAATAAAATAAACATAGC+GGG | - | chr1.1:1053862-1053881 | MS.gene90642:intron | 25.0% |
| ! | GAGGTAATGTAATTTAATGA+TGG | - | chr1.1:1057281-1057300 | MS.gene90642:intron | 25.0% |
| ! | GTAAAATTGGTACAAAAGAA+AGG | - | chr1.1:1054861-1054880 | MS.gene90642:intron | 25.0% |
| ! | TAAAAAATGTTGAACCCTTA+AGG | + | chr1.1:1055517-1055536 | None:intergenic | 25.0% |
| ! | TAACAAACCTTATCAATAGA+TGG | + | chr1.1:1056015-1056034 | None:intergenic | 25.0% |
| ! | TAGGTTCAACATTCAAATTT+GGG | + | chr1.1:1055699-1055718 | None:intergenic | 25.0% |
| ! | TATACAATACAATGACTTAC+AGG | + | chr1.1:1058373-1058392 | None:intergenic | 25.0% |
| ! | TATTGCTTGATTAGATTGTT+GGG | - | chr1.1:1053822-1053841 | MS.gene90642:intron | 25.0% |
| ! | TCAATTATTGGTACTATAAC+TGG | + | chr1.1:1055357-1055376 | None:intergenic | 25.0% |
| ! | TGATAGATAAACAACTGAAA+CGG | - | chr1.1:1054135-1054154 | MS.gene90642:intron | 25.0% |
| ! | TGGAACTAATAATGAAAAAG+TGG | + | chr1.1:1055559-1055578 | None:intergenic | 25.0% |
| ! | TTAGGTTCAACATTCAAATT+TGG | + | chr1.1:1055700-1055719 | None:intergenic | 25.0% |
| ! | TTAGTAAACAAAATGAAACC+AGG | + | chr1.1:1057794-1057813 | None:intergenic | 25.0% |
| ! | TTATTGCTTGATTAGATTGT+TGG | - | chr1.1:1053821-1053840 | MS.gene90642:intron | 25.0% |
| ! | TTGTAGTTATACAGTTAAAC+TGG | - | chr1.1:1058410-1058429 | MS.gene90642:intron | 25.0% |
| ! | TTTAGGAAAGGATATAAATC+AGG | + | chr1.1:1055076-1055095 | None:intergenic | 25.0% |
| !! | AAACGAAACAATTTCTTTTC+GGG | - | chr1.1:1057381-1057400 | MS.gene90642:CDS | 25.0% |
| !! | ATCATATAGTAAAAGGTGTA+AGG | + | chr1.1:1056994-1057013 | None:intergenic | 25.0% |
| !! | ATTTAAAACCTTGAAAACAG+TGG | - | chr1.1:1054527-1054546 | MS.gene90642:intron | 25.0% |
| !! | ATTTCTAAAGACATTCTCAA+CGG | - | chr1.1:1054992-1055011 | MS.gene90642:intron | 25.0% |
| !! | CAAACGAAACAATTTCTTTT+CGG | - | chr1.1:1057380-1057399 | MS.gene90642:CDS | 25.0% |
| !! | CACATTAAAGTATTAGTTTC+TGG | + | chr1.1:1054821-1054840 | None:intergenic | 25.0% |
| !! | CATTAAAGTATTAGTTTCTG+GGG | + | chr1.1:1054819-1054838 | None:intergenic | 25.0% |
| !! | CATTTCAAGATTTTCTACTA+TGG | + | chr1.1:1053958-1053977 | None:intergenic | 25.0% |
| !! | GTTGGTTGATATTGTAAAAT+TGG | - | chr1.1:1054848-1054867 | MS.gene90642:intron | 25.0% |
| !! | TAGGAAGCGTAAAAAATAAT+TGG | + | chr1.1:1055807-1055826 | None:intergenic | 25.0% |
| !! | TCAAGATTCAAAGTGTATTT+TGG | - | chr1.1:1054603-1054622 | MS.gene90642:intron | 25.0% |
| !! | TTGAACTTTTGACATTGTAA+GGG | - | chr1.1:1054102-1054121 | MS.gene90642:intron | 25.0% |
| !! | TTTAACTTTATATCTAGGGA+AGG | + | chr1.1:1055047-1055066 | None:intergenic | 25.0% |
| !! | TTTGAACTTTTGACATTGTA+AGG | - | chr1.1:1054101-1054120 | MS.gene90642:intron | 25.0% |
| !!! | ATTACACAAACTTGTTAAAC+CGG | - | chr1.1:1057439-1057458 | MS.gene90642:intron | 25.0% |
| !!! | CAAACCCTTATTTTTTTTTC+AGG | - | chr1.1:1056576-1056595 | MS.gene90642:CDS | 25.0% |
| !!! | CATGGTCTTTTTTTTTTTGA+AGG | - | chr1.1:1056248-1056267 | MS.gene90642:intron | 25.0% |
| !!! | GGACTTTAAAATTTATCCTT+CGG | - | chr1.1:1058678-1058697 | MS.gene90642:intron | 25.0% |
| !!! | GGCTTTTAACTTTATATCTA+GGG | + | chr1.1:1055051-1055070 | None:intergenic | 25.0% |
| !!! | GTTATATTCTATTTTTCTCG+AGG | + | chr1.1:1056181-1056200 | None:intergenic | 25.0% |
| !!! | GTTTTCTGTGTATTTTTTTG+AGG | - | chr1.1:1055425-1055444 | MS.gene90642:CDS | 25.0% |
| !!! | TTGTATACTTTTTTCAGTAC+CGG | - | chr1.1:1058386-1058405 | MS.gene90642:intron | 25.0% |
| AACAAATGTAGCCACAATTA+CGG | + | chr1.1:1054450-1054469 | None:intergenic | 30.0% | |
| AACCAGGAAAAATAACACAA+CGG | + | chr1.1:1057778-1057797 | None:intergenic | 30.0% | |
| AAGAAGCAAATGCAAAACAA+AGG | + | chr1.1:1053771-1053790 | None:intergenic | 30.0% | |
| AATCATAATATTCGCATTGC+GGG | + | chr1.1:1057953-1057972 | None:intergenic | 30.0% | |
| AATTACCTGTATATCAGCTA+AGG | + | chr1.1:1057537-1057556 | None:intergenic | 30.0% | |
| ACAAACTCACAAGCAAATTA+CGG | - | chr1.1:1058141-1058160 | MS.gene90642:intron | 30.0% | |
| ACATGAATGTCTTCAATTTG+AGG | - | chr1.1:1058657-1058676 | MS.gene90642:intron | 30.0% | |
| AGCATTTGAAAGGAAGATAA+AGG | + | chr1.1:1057582-1057601 | None:intergenic | 30.0% | |
| AGTGGACCTTAAAAAAAACA+TGG | - | chr1.1:1056230-1056249 | MS.gene90642:intron | 30.0% | |
| AGTTATACAGTTAAACTGGT+TGG | - | chr1.1:1058414-1058433 | MS.gene90642:intron | 30.0% | |
| ATGAAGAAGTTGTTATCCAA+TGG | - | chr1.1:1057637-1057656 | MS.gene90642:CDS | 30.0% | |
| ATTGATAGATATGGAATGGT+AGG | - | chr1.1:1056854-1056873 | MS.gene90642:intron | 30.0% | |
| ATTGTCCTTGATTTCTCAAT+TGG | - | chr1.1:1056941-1056960 | MS.gene90642:intron | 30.0% | |
| CATATATCAGGGAAAAAACT+AGG | - | chr1.1:1054631-1054650 | MS.gene90642:intron | 30.0% | |
| CTCAATATTTGAGTCAAAAC+TGG | + | chr1.1:1055399-1055418 | None:intergenic | 30.0% | |
| CTTGTGAGTTTGTATTTGTA+TGG | + | chr1.1:1058134-1058153 | None:intergenic | 30.0% | |
| GAAAAACAAAAGGCTAACAA+AGG | + | chr1.1:1054776-1054795 | None:intergenic | 30.0% | |
| GAATAATCCATTGGATACAT+AGG | + | chr1.1:1055988-1056007 | None:intergenic | 30.0% | |
| GAATCATAATATTCGCATTG+CGG | + | chr1.1:1057954-1057973 | None:intergenic | 30.0% | |
| GAGGTAAGATAAATGAAAGA+TGG | - | chr1.1:1058163-1058182 | MS.gene90642:intron | 30.0% | |
| GGAAAATGGGAAATTAAATG+AGG | - | chr1.1:1056771-1056790 | MS.gene90642:intron | 30.0% | |
| GTGTGTCTATAAATTCAACA+AGG | + | chr1.1:1056098-1056117 | None:intergenic | 30.0% | |
| TAAACTGTGTCCAACTAATA+TGG | + | chr1.1:1057665-1057684 | None:intergenic | 30.0% | |
| TAAATTTCATCCACAGACAA+TGG | + | chr1.1:1056555-1056574 | None:intergenic | 30.0% | |
| TAAGCCATTTCCATTAACAT+TGG | - | chr1.1:1058339-1058358 | MS.gene90642:intron | 30.0% | |
| TACGGTTAGAAAAACATAGT+AGG | + | chr1.1:1055922-1055941 | None:intergenic | 30.0% | |
| TATGTGCACTGCAATAAAAA+AGG | + | chr1.1:1056519-1056538 | None:intergenic | 30.0% | |
| TCCTTCATTAAGCATTTGAA+AGG | + | chr1.1:1057592-1057611 | None:intergenic | 30.0% | |
| TCCTTTCAAATGCTTAATGA+AGG | - | chr1.1:1057588-1057607 | MS.gene90642:CDS | 30.0% | |
| TCTATAAATTCAACAAGGAC+TGG | + | chr1.1:1056093-1056112 | None:intergenic | 30.0% | |
| TCTATAGATATGGAATACAG+TGG | + | chr1.1:1056623-1056642 | None:intergenic | 30.0% | |
| TGAACCAATGTTAATGGAAA+TGG | + | chr1.1:1058346-1058365 | None:intergenic | 30.0% | |
| TGCTACAGTTTATAAGCATT+CGG | - | chr1.1:1057044-1057063 | MS.gene90642:intron | 30.0% | |
| TGTTGTAGATCACAATTTAG+AGG | - | chr1.1:1057262-1057281 | MS.gene90642:intron | 30.0% | |
| TTAACTGTATAACTACAACC+CGG | + | chr1.1:1058408-1058427 | None:intergenic | 30.0% | |
| TTCAGTGCTTGAAAATGAAA+TGG | - | chr1.1:1056367-1056386 | MS.gene90642:intron | 30.0% | |
| ! | AACGAAACAATTTCTTTTCG+GGG | - | chr1.1:1057382-1057401 | MS.gene90642:CDS | 30.0% |
| ! | AGATGATTTCAGAACTTTTC+AGG | - | chr1.1:1057412-1057431 | MS.gene90642:CDS | 30.0% |
| ! | ATCTTTGTAACAGTCTGTTT+TGG | - | chr1.1:1058219-1058238 | MS.gene90642:intron | 30.0% |
| ! | CTTGTAAGTCAGCTTTTATA+TGG | + | chr1.1:1055654-1055673 | None:intergenic | 30.0% |
| ! | GATAATGCATAAAGGTACAA+TGG | + | chr1.1:1055579-1055598 | None:intergenic | 30.0% |
| ! | GTTTTTCTAACCGTAACTTT+TGG | - | chr1.1:1055927-1055946 | MS.gene90642:intron | 30.0% |
| ! | TCTTTGTAACAGTCTGTTTT+GGG | - | chr1.1:1058220-1058239 | MS.gene90642:intron | 30.0% |
| ! | TGAACTTTTGACATTGTAAG+GGG | - | chr1.1:1054103-1054122 | MS.gene90642:intron | 30.0% |
| ! | TTACCATTTTGAATGCACAT+AGG | + | chr1.1:1056070-1056089 | None:intergenic | 30.0% |
| !! | GTTGGTTCTAAAAATAGCTA+AGG | + | chr1.1:1058814-1058833 | None:intergenic | 30.0% |
| !! | TTGGGTTCAAGTTTTGTAAA+TGG | - | chr1.1:1054353-1054372 | MS.gene90642:intron | 30.0% |
| !! | TTTTTGCTGTGGAAAATGAA+GGG | - | chr1.1:1057122-1057141 | MS.gene90642:intron | 30.0% |
| !!! | GGGCTTTTAACTTTATATCT+AGG | + | chr1.1:1055052-1055071 | None:intergenic | 30.0% |
| !!! | TGTATACTTTTTTCAGTACC+GGG | - | chr1.1:1058387-1058406 | MS.gene90642:intron | 30.0% |
| !!! | TTGTTAGCCTTTTGTTTTTC+CGG | - | chr1.1:1054776-1054795 | MS.gene90642:intron | 30.0% |
| !!! | TTTATGTCACTTTTTTGCTG+TGG | - | chr1.1:1057111-1057130 | MS.gene90642:intron | 30.0% |
| !!! | TTTTTTGCTGTGGAAAATGA+AGG | - | chr1.1:1057121-1057140 | MS.gene90642:intron | 30.0% |
| AAATGGTTCTCTGTGAAGAT+GGG | - | chr1.1:1057216-1057235 | MS.gene90642:intron | 35.0% | |
| AAATGTTGAACCCTTAAGGA+TGG | + | chr1.1:1055513-1055532 | None:intergenic | 35.0% | |
| AACCCAATACCTTGTTCAAA+GGG | + | chr1.1:1054340-1054359 | None:intergenic | 35.0% | |
| AACCTTAAGAAAAAGGCCAA+AGG | - | chr1.1:1057158-1057177 | MS.gene90642:intron | 35.0% | |
| AACTAGACCGGAAAAACAAA+AGG | + | chr1.1:1054786-1054805 | None:intergenic | 35.0% | |
| ACCTTAAGAAAAAGGCCAAA+GGG | - | chr1.1:1057159-1057178 | MS.gene90642:intron | 35.0% | |
| ACTTTAATGTGCATAGGTGT+TGG | - | chr1.1:1054830-1054849 | MS.gene90642:intron | 35.0% | |
| AGAGGTTCATCCGTAATTAT+TGG | - | chr1.1:1058630-1058649 | MS.gene90642:intron | 35.0% | |
| AGGAAAGGATATAAATCAGG+AGG | + | chr1.1:1055073-1055092 | None:intergenic | 35.0% | |
| ATGAATGCATAACAGTACCA+TGG | + | chr1.1:1054222-1054241 | None:intergenic | 35.0% | |
| CAAAACAAAGGAGATACTGT+AGG | + | chr1.1:1053759-1053778 | None:intergenic | 35.0% | |
| CAAGTCAAGAAGTTCACATT+AGG | + | chr1.1:1056123-1056142 | None:intergenic | 35.0% | |
| CATGACCAATTGAGAAATCA+AGG | + | chr1.1:1056949-1056968 | None:intergenic | 35.0% | |
| GAAAATGAGTAAGACTGATC+TGG | + | chr1.1:1055117-1055136 | None:intergenic | 35.0% | |
| GAAGCTTGATTATGTTAGAG+TGG | - | chr1.1:1057834-1057853 | MS.gene90642:intron | 35.0% | |
| GACTACAAAACAGAGATTAC+TGG | - | chr1.1:1057476-1057495 | MS.gene90642:intron | 35.0% | |
| GATAAACAACTGAAACGGAA+AGG | - | chr1.1:1054140-1054159 | MS.gene90642:intron | 35.0% | |
| GATGCATATGAAAATGTCCA+AGG | - | chr1.1:1058845-1058864 | MS.gene90642:intron | 35.0% | |
| GCTACAGTTTATAAGCATTC+GGG | - | chr1.1:1057045-1057064 | MS.gene90642:intron | 35.0% | |
| GGAAAGGATATAAATCAGGA+GGG | + | chr1.1:1055072-1055091 | None:intergenic | 35.0% | |
| GGGCGATTAACTTTATCTTT+AGG | + | chr1.1:1055093-1055112 | None:intergenic | 35.0% | |
| GTTCTTGCAAAGATCAAACA+TGG | - | chr1.1:1058310-1058329 | MS.gene90642:intron | 35.0% | |
| TAGTCTTTGATTGCTTTCTC+CGG | + | chr1.1:1057461-1057480 | None:intergenic | 35.0% | |
| TATGAAAACATACCTGCTCA+GGG | + | chr1.1:1055227-1055246 | None:intergenic | 35.0% | |
| TATTCAATCTGTGACACTCA+TGG | + | chr1.1:1054029-1054048 | None:intergenic | 35.0% | |
| TCATATGGTTATTCCTTTGG+AGG | - | chr1.1:1058020-1058039 | MS.gene90642:intron | 35.0% | |
| TCCAACTAATATGGTTCCAT+TGG | + | chr1.1:1057656-1057675 | None:intergenic | 35.0% | |
| TCCAATGGAACCATATTAGT+TGG | - | chr1.1:1057652-1057671 | MS.gene90642:CDS | 35.0% | |
| TCTACAACGAAATTAGCAGT+AGG | + | chr1.1:1057744-1057763 | None:intergenic | 35.0% | |
| TCTTACTTCACCATCCTTAA+GGG | - | chr1.1:1055500-1055519 | MS.gene90642:intron | 35.0% | |
| TGACACAAACTATTCAACGA+AGG | + | chr1.1:1057910-1057929 | None:intergenic | 35.0% | |
| TGGTCATATGGTTATTCCTT+TGG | - | chr1.1:1058017-1058036 | MS.gene90642:intron | 35.0% | |
| TTAAATTCTGATTGAAGCCG+CGG | + | chr1.1:1054513-1054532 | None:intergenic | 35.0% | |
| TTAGGTTTCAGAAAGTGAGA+TGG | - | chr1.1:1058472-1058491 | MS.gene90642:intron | 35.0% | |
| TTATGAAAACATACCTGCTC+AGG | + | chr1.1:1055228-1055247 | None:intergenic | 35.0% | |
| TTCGTTGCCATCTATTGATA+AGG | - | chr1.1:1056005-1056024 | MS.gene90642:intron | 35.0% | |
| TTCTTACTTCACCATCCTTA+AGG | - | chr1.1:1055499-1055518 | MS.gene90642:intron | 35.0% | |
| TTTCATTCATCTAAACCAGC+AGG | + | chr1.1:1054746-1054765 | None:intergenic | 35.0% | |
| TTTGTTTGGCTGTCTTTGAA+TGG | - | chr1.1:1057718-1057737 | MS.gene90642:CDS | 35.0% | |
| ! | AAAGGACTTTTCTCACTAAC+TGG | - | chr1.1:1054158-1054177 | MS.gene90642:intron | 35.0% |
| ! | AAAGGCATGAAGGGTAAAAT+GGG | - | chr1.1:1054879-1054898 | MS.gene90642:intron | 35.0% |
| ! | AACTCTGATCTCCTATTTTC+TGG | - | chr1.1:1056040-1056059 | MS.gene90642:intron | 35.0% |
| ! | AGTGTCGTGAACATTTTGTT+TGG | - | chr1.1:1057704-1057723 | MS.gene90642:CDS | 35.0% |
| ! | CGACTAATCTGATTTGAACT+AGG | + | chr1.1:1054579-1054598 | None:intergenic | 35.0% |
| ! | GTACAAAAGAAAGGCATGAA+GGG | - | chr1.1:1054870-1054889 | MS.gene90642:intron | 35.0% |
| ! | GTCGTGGTCTATTGAATTTT+AGG | + | chr1.1:1055718-1055737 | None:intergenic | 35.0% |
| ! | TAAGTCAGCTTTTATATGGC+AGG | + | chr1.1:1055650-1055669 | None:intergenic | 35.0% |
| ! | TGATGGTTCTTCCTTTTACT+CGG | - | chr1.1:1057298-1057317 | MS.gene90642:intron | 35.0% |
| ! | TTCGTTGAATAGTTTGTGTC+AGG | - | chr1.1:1057909-1057928 | MS.gene90642:intron | 35.0% |
| ! | TTTTTGATGTATACACCTGC+TGG | - | chr1.1:1054728-1054747 | MS.gene90642:CDS | 35.0% |
| !! | AGTATTAGTTTCTGGGGTTA+AGG | + | chr1.1:1054813-1054832 | None:intergenic | 35.0% |
| !!! | AGTTTTTTGGCAACATCATG+CGG | - | chr1.1:1055148-1055167 | MS.gene90642:CDS | 35.0% |
| !!! | CTATTTTTAGAACCAACGAG+AGG | - | chr1.1:1058817-1058836 | MS.gene90642:intron | 35.0% |
| !!! | CTGGGCTATTTTTCTTGTTT+GGG | - | chr1.1:1058726-1058745 | MS.gene90642:intron | 35.0% |
| !!! | GTTTGCTGTTCTCTCATTTT+AGG | - | chr1.1:1058454-1058473 | MS.gene90642:intron | 35.0% |
| !!! | TCTTCTTGTGCTCAGTTTTT+TGG | - | chr1.1:1055135-1055154 | MS.gene90642:CDS | 35.0% |
| !!! | TGTTTTTTATCAGCGAGTTC+TGG | - | chr1.1:1054292-1054311 | MS.gene90642:CDS | 35.0% |
| !!! | TTCCGTTGTGTTATTTTTCC+TGG | - | chr1.1:1057773-1057792 | MS.gene90642:intron | 35.0% |
| AAAGACATTCTCAACGGATG+AGG | - | chr1.1:1054998-1055017 | MS.gene90642:intron | 40.0% | |
| AAATGCAGCCAAAACCTCAT+GGG | + | chr1.1:1054976-1054995 | None:intergenic | 40.0% | |
| AACAAGAGAGAGAGAGAGTT+GGG | - | chr1.1:1053925-1053944 | MS.gene90642:intron | 40.0% | |
| AACTCACAAGCAAATTACGG+AGG | - | chr1.1:1058144-1058163 | MS.gene90642:intron | 40.0% | |
| AATGAGTAAGACTGATCTGG+AGG | + | chr1.1:1055114-1055133 | None:intergenic | 40.0% | |
| ACAATCAACAGCAACCATTG+TGG | + | chr1.1:1057195-1057214 | None:intergenic | 40.0% | |
| ACATAGGCTGACCAGAAAAT+AGG | + | chr1.1:1056054-1056073 | None:intergenic | 40.0% | |
| ACCCAATACCTTGTTCAAAG+GGG | + | chr1.1:1054339-1054358 | None:intergenic | 40.0% | |
| ACTACACGAAATTGTTCCTG+GGG | - | chr1.1:1058541-1058560 | MS.gene90642:intron | 40.0% | |
| AGGGATAAGATCTACCACAA+TGG | - | chr1.1:1057178-1057197 | MS.gene90642:intron | 40.0% | |
| ATGAAAACATACCTGCTCAG+GGG | + | chr1.1:1055226-1055245 | None:intergenic | 40.0% | |
| ATGAGTAAGACTGATCTGGA+GGG | + | chr1.1:1055113-1055132 | None:intergenic | 40.0% | |
| ATGTGTGGTAAGACTAGACA+AGG | - | chr1.1:1053886-1053905 | MS.gene90642:intron | 40.0% | |
| ATTTCATCCACAGACAATGG+TGG | + | chr1.1:1056552-1056571 | None:intergenic | 40.0% | |
| CACTACACGAAATTGTTCCT+GGG | - | chr1.1:1058540-1058559 | MS.gene90642:intron | 40.0% | |
| CAGCCTATGTGCATTCAAAA+TGG | - | chr1.1:1056064-1056083 | MS.gene90642:intron | 40.0% | |
| CATCAGACAATTATCAGTCG+TGG | + | chr1.1:1055734-1055753 | None:intergenic | 40.0% | |
| CTCTGTGATGCCAAAAGTTA+CGG | + | chr1.1:1055940-1055959 | None:intergenic | 40.0% | |
| GAAATGGTTCTCTGTGAAGA+TGG | - | chr1.1:1057215-1057234 | MS.gene90642:intron | 40.0% | |
| GAACCCAATACCTTGTTCAA+AGG | + | chr1.1:1054341-1054360 | None:intergenic | 40.0% | |
| GAACTAGGTAAACCCACTTA+CGG | + | chr1.1:1054564-1054583 | None:intergenic | 40.0% | |
| GATGGCAACGAATAATCCAT+TGG | + | chr1.1:1055997-1056016 | None:intergenic | 40.0% | |
| GGACTTCACAATAGATCGAA+AGG | - | chr1.1:1058562-1058581 | MS.gene90642:intron | 40.0% | |
| GGCTATGAAGTTCGGAAAAA+GGG | - | chr1.1:1058241-1058260 | MS.gene90642:intron | 40.0% | |
| GGCTCTTGAACCAATGTTAA+TGG | + | chr1.1:1058352-1058371 | None:intergenic | 40.0% | |
| GGTTAAGGAGAAAACTAGAC+CGG | + | chr1.1:1054798-1054817 | None:intergenic | 40.0% | |
| GTGTAACGAAATTCCTCCAA+AGG | + | chr1.1:1058036-1058055 | None:intergenic | 40.0% | |
| TATGTCATTATGTCCTGCCA+TGG | - | chr1.1:1054202-1054221 | MS.gene90642:intron | 40.0% | |
| TGCTTGATTAGATTGTTGGG+TGG | - | chr1.1:1053825-1053844 | MS.gene90642:intron | 40.0% | |
| TGTGGTAGATCTTATCCCTT+TGG | + | chr1.1:1057177-1057196 | None:intergenic | 40.0% | |
| TTGCTCCTTAGCTGATATAC+AGG | - | chr1.1:1057529-1057548 | MS.gene90642:intron | 40.0% | |
| TTTCAACTGTAGCCTCTGTT+AGG | - | chr1.1:1056704-1056723 | MS.gene90642:intron | 40.0% | |
| ! | CAAAACTGCCACTGTTTTCA+AGG | + | chr1.1:1054538-1054557 | None:intergenic | 40.0% |
| ! | GAAAGGCATGAAGGGTAAAA+TGG | - | chr1.1:1054878-1054897 | MS.gene90642:intron | 40.0% |
| ! | GAAAGTTACCTTCTTTTCCG+CGG | + | chr1.1:1053732-1053751 | None:intergenic | 40.0% |
| ! | GGTACAAAAGAAAGGCATGA+AGG | - | chr1.1:1054869-1054888 | MS.gene90642:intron | 40.0% |
| ! | GGTTGCTGTTGATTGTGAAA+TGG | - | chr1.1:1057199-1057218 | MS.gene90642:intron | 40.0% |
| !! | AATGTCAACAAGAGTACCGA+AGG | + | chr1.1:1058697-1058716 | None:intergenic | 40.0% |
| !! | CTGTTTTGGGCTATGAAGTT+CGG | - | chr1.1:1058233-1058252 | MS.gene90642:intron | 40.0% |
| !! | GAGTTCTGGTTCTAGTGATA+AGG | - | chr1.1:1054306-1054325 | MS.gene90642:CDS | 40.0% |
| !! | TCCCTTTGGCCTTTTTCTTA+AGG | + | chr1.1:1057163-1057182 | None:intergenic | 40.0% |
| !!! | GCTGGGCTATTTTTCTTGTT+TGG | - | chr1.1:1058725-1058744 | MS.gene90642:intron | 40.0% |
| AACCTCTTCCTCAGAACAGT+GGG | + | chr1.1:1058617-1058636 | None:intergenic | 45.0% | |
| AAGCGCAATGCCTCAATCTT+TGG | + | chr1.1:1057355-1057374 | None:intergenic | 45.0% | |
| ACAAGAGAGAGAGAGAGTTG+GGG | - | chr1.1:1053926-1053945 | MS.gene90642:intron | 45.0% | |
| AGCGCAATGCCTCAATCTTT+GGG | + | chr1.1:1057354-1057373 | None:intergenic | 45.0% | |
| ATCAGCCACAAGCACATAGT+AGG | + | chr1.1:1055826-1055845 | None:intergenic | 45.0% | |
| ATGACGAGTCACCGAGTAAA+AGG | + | chr1.1:1057312-1057331 | None:intergenic | 45.0% | |
| ATGCATAACAGTACCATGGC+AGG | + | chr1.1:1054218-1054237 | None:intergenic | 45.0% | |
| ATGTGCTTGTGGCTGATGAT+GGG | - | chr1.1:1055829-1055848 | MS.gene90642:intron | 45.0% | |
| CAACAAGAGAGAGAGAGAGT+TGG | - | chr1.1:1053924-1053943 | MS.gene90642:intron | 45.0% | |
| CACAATTACGGTCATGATGC+TGG | + | chr1.1:1054438-1054457 | None:intergenic | 45.0% | |
| CAGAACAGTGGGATGCTTAA+AGG | + | chr1.1:1058606-1058625 | None:intergenic | 45.0% | |
| CAGCATCATGACCGTAATTG+TGG | - | chr1.1:1054436-1054455 | MS.gene90642:intron | 45.0% | |
| CCCAATACCTTGTTCAAAGG+GGG | + | chr1.1:1054338-1054357 | None:intergenic | 45.0% | |
| CTCAACGGATGAGGATTTGA+AGG | - | chr1.1:1055007-1055026 | MS.gene90642:intron | 45.0% | |
| CTGTGAATAGAGCCATCCAA+GGG | + | chr1.1:1057883-1057902 | None:intergenic | 45.0% | |
| CTTATCTCCTTGACCGTTTC+TGG | + | chr1.1:1058784-1058803 | None:intergenic | 45.0% | |
| CTTCCTCTTAAAGCCATACC+CGG | - | chr1.1:1055458-1055477 | MS.gene90642:intron | 45.0% | |
| GAAATGCAGCCAAAACCTCA+TGG | + | chr1.1:1054977-1054996 | None:intergenic | 45.0% | |
| GCACTACACGAAATTGTTCC+TGG | - | chr1.1:1058539-1058558 | MS.gene90642:intron | 45.0% | |
| GGGCTATGAAGTTCGGAAAA+AGG | - | chr1.1:1058240-1058259 | MS.gene90642:intron | 45.0% | |
| GTATGAGCGATCCATCAAAG+AGG | - | chr1.1:1054949-1054968 | MS.gene90642:intron | 45.0% | |
| GTGGTAAGACTAGACAAGGT+GGG | - | chr1.1:1053890-1053909 | MS.gene90642:intron | 45.0% | |
| GTTGACATTCAGTCACTGCT+GGG | - | chr1.1:1058708-1058727 | MS.gene90642:intron | 45.0% | |
| TACATCTTCCAACCCTTGGA+TGG | - | chr1.1:1057868-1057887 | MS.gene90642:intron | 45.0% | |
| TAGTGCTTCAGTGTTCACAG+TGG | + | chr1.1:1058525-1058544 | None:intergenic | 45.0% | |
| TATGTGCTTGTGGCTGATGA+TGG | - | chr1.1:1055828-1055847 | MS.gene90642:intron | 45.0% | |
| TCCCCCTTTGAACAAGGTAT+TGG | - | chr1.1:1054334-1054353 | MS.gene90642:CDS | 45.0% | |
| TGAAGATGGGACTGAAGCTT+TGG | - | chr1.1:1057229-1057248 | MS.gene90642:intron | 45.0% | |
| TGAAGGGTAAAATGGGAGAC+TGG | - | chr1.1:1054886-1054905 | MS.gene90642:intron | 45.0% | |
| TGCATACATCTTCCAACCCT+TGG | - | chr1.1:1057864-1057883 | MS.gene90642:intron | 45.0% | |
| TGCTGTGGAAAATGAAGGGA+TGG | - | chr1.1:1057126-1057145 | MS.gene90642:intron | 45.0% | |
| TGTGGTAAGACTAGACAAGG+TGG | - | chr1.1:1053889-1053908 | MS.gene90642:intron | 45.0% | |
| TGTTGACATTCAGTCACTGC+TGG | - | chr1.1:1058707-1058726 | MS.gene90642:intron | 45.0% | |
| TTAAGCATCCCACTGTTCTG+AGG | - | chr1.1:1058606-1058625 | MS.gene90642:intron | 45.0% | |
| TTGCTTCAGCCTTCCAGAAA+CGG | - | chr1.1:1058768-1058787 | MS.gene90642:intron | 45.0% | |
| ! | AAAGAGGTCCCATGAGGTTT+TGG | - | chr1.1:1054965-1054984 | MS.gene90642:intron | 45.0% |
| ! | ATAAACATAGCGGGGATGTG+TGG | - | chr1.1:1053871-1053890 | MS.gene90642:intron | 45.0% |
| ! | CCCCCTTTGAACAAGGTATT+GGG | - | chr1.1:1054335-1054354 | MS.gene90642:CDS | 45.0% |
| ! | CGTAACTTTTGGCATCACAG+AGG | - | chr1.1:1055938-1055957 | MS.gene90642:intron | 45.0% |
| ! | GAGTTTTCCCCCTTTGAACA+AGG | - | chr1.1:1054328-1054347 | MS.gene90642:CDS | 45.0% |
| !! | GCAGTTTTGTCTCCGTAAGT+GGG | - | chr1.1:1054549-1054568 | MS.gene90642:intron | 45.0% |
| AAGCCAAAGACACATGCAGC+CGG | + | chr1.1:1055480-1055499 | None:intergenic | 50.0% | |
| ACCTCATGGGACCTCTTTGA+TGG | + | chr1.1:1054963-1054982 | None:intergenic | 50.0% | |
| ATCTGTGCTTGTCTGCGCTT+TGG | - | chr1.1:1058092-1058111 | MS.gene90642:intron | 50.0% | |
| ATGCATCATGTGCCTCTCGT+TGG | + | chr1.1:1058832-1058851 | None:intergenic | 50.0% | |
| CAATGCCTCAATCTTTGGGC+AGG | + | chr1.1:1057350-1057369 | None:intergenic | 50.0% | |
| CCAGCACCCTATGTATCCAA+TGG | - | chr1.1:1055978-1055997 | MS.gene90642:intron | 50.0% | |
| CCATTGGATACATAGGGTGC+TGG | + | chr1.1:1055981-1056000 | None:intergenic | 50.0% | |
| CCTCAATCTTTGGGCAGGTA+GGG | + | chr1.1:1057345-1057364 | None:intergenic | 50.0% | |
| CCTGTGAATAGAGCCATCCA+AGG | + | chr1.1:1057884-1057903 | None:intergenic | 50.0% | |
| CGATCTATTGTGAAGTCCCC+AGG | + | chr1.1:1058560-1058579 | None:intergenic | 50.0% | |
| CGCTTCCTACTATGTGCTTG+TGG | - | chr1.1:1055818-1055837 | MS.gene90642:intron | 50.0% | |
| GAACCTCTTCCTCAGAACAG+TGG | + | chr1.1:1058618-1058637 | None:intergenic | 50.0% | |
| GAATAGAGCCATCCAAGGGT+TGG | + | chr1.1:1057879-1057898 | None:intergenic | 50.0% | |
| GATTGACACCGCGGAAAAGA+AGG | - | chr1.1:1053721-1053740 | MS.gene90642:CDS | 50.0% | |
| GCGTGCTGCAATCTCTTGAA+TGG | + | chr1.1:1054484-1054503 | None:intergenic | 50.0% | |
| GCTTCAGTGTTCACAGTGGT+TGG | + | chr1.1:1058521-1058540 | None:intergenic | 50.0% | |
| GGATGAGAAGATTGACACCG+CGG | - | chr1.1:1053712-1053731 | MS.gene90642:CDS | 50.0% | |
| GGGTAAAATGGGAGACTGGA+AGG | - | chr1.1:1054890-1054909 | MS.gene90642:CDS | 50.0% | |
| TAAGGCCTCTCTCCTAACAG+AGG | + | chr1.1:1056719-1056738 | None:intergenic | 50.0% | |
| TCCATCAAAGAGGTCCCATG+AGG | - | chr1.1:1054959-1054978 | MS.gene90642:intron | 50.0% | |
| TGTAGCCTCTGTTAGGAGAG+AGG | - | chr1.1:1056711-1056730 | MS.gene90642:intron | 50.0% | |
| TTTGGGCAGGTAGGGAAGAA+GGG | + | chr1.1:1057337-1057356 | None:intergenic | 50.0% | |
| ! | CCTTGGATGGCTCTATTCAC+AGG | - | chr1.1:1057881-1057900 | MS.gene90642:intron | 50.0% |
| ! | TCTCCTTGACCGTTTCTGGA+AGG | + | chr1.1:1058780-1058799 | None:intergenic | 50.0% |
| !! | AAAAGCGCCACCATTGTCTG+TGG | - | chr1.1:1056542-1056561 | MS.gene90642:intron | 50.0% |
| !! | ATCCCACTGTTCTGAGGAAG+AGG | - | chr1.1:1058612-1058631 | MS.gene90642:intron | 50.0% |
| !! | CGGGTATGGCTTTAAGAGGA+AGG | + | chr1.1:1055460-1055479 | None:intergenic | 50.0% |
| !! | GGCAGTTTTGTCTCCGTAAG+TGG | - | chr1.1:1054548-1054567 | MS.gene90642:intron | 50.0% |
| !! | TAGGGTGCTGGAGAGTTACT+TGG | + | chr1.1:1055969-1055988 | None:intergenic | 50.0% |
| AAGACACATGCAGCCGGGTA+TGG | + | chr1.1:1055474-1055493 | None:intergenic | 55.0% | |
| AGCCAAAGACACATGCAGCC+GGG | + | chr1.1:1055479-1055498 | None:intergenic | 55.0% | |
| ATCTCACGATTCCCCTGAGC+AGG | - | chr1.1:1055212-1055231 | MS.gene90642:intron | 55.0% | |
| CAGCCTTCCAGAAACGGTCA+AGG | - | chr1.1:1058774-1058793 | MS.gene90642:intron | 55.0% | |
| CCCTACCTGCCCAAAGATTG+AGG | - | chr1.1:1057342-1057361 | MS.gene90642:intron | 55.0% | |
| CGGTCATGATGCTGGTGCAA+TGG | + | chr1.1:1054430-1054449 | None:intergenic | 55.0% | |
| CTTTGGGCAGGTAGGGAAGA+AGG | + | chr1.1:1057338-1057357 | None:intergenic | 55.0% | |
| GCCTCAATCTTTGGGCAGGT+AGG | + | chr1.1:1057346-1057365 | None:intergenic | 55.0% | |
| TACCCGGCTGCATGTGTCTT+TGG | - | chr1.1:1055474-1055493 | MS.gene90642:intron | 55.0% | |
| TTGGGCAGGTAGGGAAGAAG+GGG | + | chr1.1:1057336-1057355 | None:intergenic | 55.0% | |
| !! | CAGCCGGGTATGGCTTTAAG+AGG | + | chr1.1:1055464-1055483 | None:intergenic | 55.0% |
| TTGCAGCACGCTTGCAACCG+CGG | - | chr1.1:1054493-1054512 | MS.gene90642:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 1053710 | 1058880 | 1053710 | ID=MS.gene90642 |
| chr1.1 | mRNA | 1053710 | 1058880 | 1053710 | ID=MS.gene90642.t1;Parent=MS.gene90642 |
| chr1.1 | exon | 1058848 | 1058880 | 1058848 | ID=MS.gene90642.t1.exon1;Parent=MS.gene90642.t1 |
| chr1.1 | CDS | 1058848 | 1058880 | 1058848 | ID=cds.MS.gene90642.t1;Parent=MS.gene90642.t1 |
| chr1.1 | exon | 1057562 | 1057744 | 1057562 | ID=MS.gene90642.t1.exon2;Parent=MS.gene90642.t1 |
| chr1.1 | CDS | 1057562 | 1057744 | 1057562 | ID=cds.MS.gene90642.t1;Parent=MS.gene90642.t1 |
| chr1.1 | exon | 1057357 | 1057440 | 1057357 | ID=MS.gene90642.t1.exon3;Parent=MS.gene90642.t1 |
| chr1.1 | CDS | 1057357 | 1057440 | 1057357 | ID=cds.MS.gene90642.t1;Parent=MS.gene90642.t1 |
| chr1.1 | exon | 1056564 | 1056632 | 1056564 | ID=MS.gene90642.t1.exon4;Parent=MS.gene90642.t1 |
| chr1.1 | CDS | 1056564 | 1056632 | 1056564 | ID=cds.MS.gene90642.t1;Parent=MS.gene90642.t1 |
| chr1.1 | exon | 1055307 | 1055447 | 1055307 | ID=MS.gene90642.t1.exon5;Parent=MS.gene90642.t1 |
| chr1.1 | CDS | 1055307 | 1055447 | 1055307 | ID=cds.MS.gene90642.t1;Parent=MS.gene90642.t1 |
| chr1.1 | exon | 1055040 | 1055180 | 1055040 | ID=MS.gene90642.t1.exon6;Parent=MS.gene90642.t1 |
| chr1.1 | CDS | 1055040 | 1055180 | 1055040 | ID=cds.MS.gene90642.t1;Parent=MS.gene90642.t1 |
| chr1.1 | exon | 1054890 | 1054959 | 1054890 | ID=MS.gene90642.t1.exon7;Parent=MS.gene90642.t1 |
| chr1.1 | CDS | 1054890 | 1054959 | 1054890 | ID=cds.MS.gene90642.t1;Parent=MS.gene90642.t1 |
| chr1.1 | exon | 1054660 | 1054760 | 1054660 | ID=MS.gene90642.t1.exon8;Parent=MS.gene90642.t1 |
| chr1.1 | CDS | 1054660 | 1054760 | 1054660 | ID=cds.MS.gene90642.t1;Parent=MS.gene90642.t1 |
| chr1.1 | exon | 1054218 | 1054358 | 1054218 | ID=MS.gene90642.t1.exon9;Parent=MS.gene90642.t1 |
| chr1.1 | CDS | 1054218 | 1054358 | 1054218 | ID=cds.MS.gene90642.t1;Parent=MS.gene90642.t1 |
| chr1.1 | exon | 1054007 | 1054114 | 1054007 | ID=MS.gene90642.t1.exon10;Parent=MS.gene90642.t1 |
| chr1.1 | CDS | 1054007 | 1054114 | 1054007 | ID=cds.MS.gene90642.t1;Parent=MS.gene90642.t1 |
| chr1.1 | exon | 1053710 | 1053813 | 1053710 | ID=MS.gene90642.t1.exon11;Parent=MS.gene90642.t1 |
| chr1.1 | CDS | 1053710 | 1053813 | 1053710 | ID=cds.MS.gene90642.t1;Parent=MS.gene90642.t1 |
| Gene Sequence |
| Protein sequence |
