AlfalfaGEDB | MS.gene90674

M. sativa cultivar XinJiangDaYe / MS.gene90674

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF08263.15 PF12799.10

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90674.t1	XP_003615451.2	93.2	605	40	1	1	605	1	604	1.60E-270	941.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90674.t1	Q9LVM0	51.5	646	262	11	3	604	6	644	2.0e-133	477.6

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90674.t1	G7KDA7	93.2	605	40	1	1	605	1	604	1.1e-270	941.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene90674	0.831439	1.67E-55	-1.69E-46
MS.gene049350	MS.gene90674	0.818255	2.16E-52	-1.69E-46
MS.gene049711	MS.gene90674	0.829824	4.15E-55	-1.69E-46
MS.gene049850	MS.gene90674	0.81806	2.39E-52	-1.69E-46
MS.gene05045	MS.gene90674	0.80299	4.32E-49	-1.69E-46
MS.gene050807	MS.gene90674	0.809845	1.55E-50	-1.69E-46
MS.gene050901	MS.gene90674	0.804607	1.99E-49	-1.69E-46
MS.gene051018	MS.gene90674	0.818366	2.04E-52	-1.69E-46
MS.gene051021	MS.gene90674	0.812412	4.29E-51	-1.69E-46
MS.gene051247	MS.gene90674	0.824522	7.71E-54	-1.69E-46

Showing 1 to 10 of 58 entries

Previous1 2 3 4 5 6Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90674.t1	MTR_5g068210	93.388	605	39	1	1	605	1	604	0.0	1102
MS.gene90674.t1	MTR_3g093710	67.504	637	170	11	1	605	1	632	0.0	810
MS.gene90674.t1	MTR_3g062500	56.260	631	240	7	1	600	13	638	0.0	672
MS.gene90674.t1	MTR_3g062500	56.260	631	240	7	1	600	23	648	0.0	672
MS.gene90674.t1	MTR_5g075630	56.619	627	238	8	1	600	20	639	0.0	642
MS.gene90674.t1	MTR_7g073710	53.809	617	243	11	2	589	4	607	0.0	600
MS.gene90674.t1	MTR_8g099195	46.721	610	272	14	30	605	23	613	2.70e-177	517
MS.gene90674.t1	MTR_5g009660	46.458	607	293	13	6	603	4	587	1.86e-175	511
MS.gene90674.t1	MTR_4g113100	47.059	612	275	15	30	602	30	631	1.45e-165	487
MS.gene90674.t1	MTR_3g090660	44.767	621	297	14	10	602	5	607	1.12e-163	481

Showing 1 to 10 of 593 entries

Previous1 2 3 4 5…60Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90674.t1	AT5G58300	55.151	631	233	10	3	589	6	630	0.0	641
MS.gene90674.t1	AT5G58300	55.151	631	233	10	3	589	6	630	0.0	641
MS.gene90674.t1	AT5G58300	55.151	631	233	10	3	589	6	630	0.0	641
MS.gene90674.t1	AT3G08680	54.634	615	244	9	7	589	4	615	0.0	628
MS.gene90674.t1	AT3G08680	54.634	615	244	9	7	589	4	615	0.0	628
MS.gene90674.t1	AT5G05160	47.360	644	282	14	6	605	8	638	0.0	561
MS.gene90674.t1	AT2G26730	47.520	625	273	13	15	592	7	623	2.04e-178	520
MS.gene90674.t1	AT4G23740	45.089	621	289	16	25	604	24	633	5.85e-171	501
MS.gene90674.t1	AT4G23740	45.089	621	289	16	25	604	24	633	5.85e-171	501
MS.gene90674.t1	AT1G68400	42.950	617	287	17	29	589	30	637	7.94e-148	442

Showing 1 to 10 of 570 entries

Previous1 2 3 4 5…57Next

Find 135 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAACAATGAAGAAT+TGG	0.379491	5.2:-57953988	None:intergenic
AACAAATTGTTCTTCTTTGA+GGG	0.371771	5.2:+57954862	MS.gene90674:CDS
AACAACATACAAGGCTAAAT+TGG	0.296548	5.2:+57954957	MS.gene90674:CDS
AACAAGAAGTTTCTCATCTT+TGG	0.154443	5.2:-57955115	None:intergenic
AACATACAAGGCTAAATTGG+AGG	0.559738	5.2:+57954960	MS.gene90674:CDS
AACATAGGAAACAGGGGTGA+AGG	0.552948	5.2:+57955632	MS.gene90674:intron
AAGAGTGATGTTTACAGCTT+TGG	0.359415	5.2:+57955914	MS.gene90674:CDS
AAGATTCCATTAGGATATTC+TGG	0.250801	5.2:+57955965	MS.gene90674:CDS
AAGCCTTCAACAAGTCTTCA+AGG	0.407580	5.2:-57954903	None:intergenic
AAGCTATGGAACAACATACA+AGG	0.609906	5.2:+57954948	MS.gene90674:CDS

Showing 1 to 10 of 135 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACAACATACAAGGCTAAAT+TGG	+	chr5.2:57954957-57954976	MS.gene90674:CDS	30.0%
AACAAGAAGTTTCTCATCTT+TGG	-	chr5.2:57955118-57955137	None:intergenic	30.0%
AAGATTCCATTAGGATATTC+TGG	+	chr5.2:57955965-57955984	MS.gene90674:CDS	30.0%
AAGGAAGAAATCCATTAAAC+TGG	+	chr5.2:57955651-57955670	MS.gene90674:CDS	30.0%
AGTCTTGAATTCCAGTTTAA+TGG	-	chr5.2:57955665-57955684	None:intergenic	30.0%
CAAAACTATGAGAGAAAGAA+AGG	-	chr5.2:57954716-57954735	None:intergenic	30.0%
CACTAAGTTCATTTGAATGA+AGG	-	chr5.2:57954285-57954304	None:intergenic	30.0%
CTAATAACTTCATCCATTGT+TGG	-	chr5.2:57956166-57956185	None:intergenic	30.0%
CTTCATTCAAATGAACTTAG+TGG	+	chr5.2:57954283-57954302	MS.gene90674:CDS	30.0%
CTTTCCTTTAACTCTTTCTT+TGG	+	chr5.2:57954421-57954440	MS.gene90674:CDS	30.0%

Showing 1 to 10 of 172 entries

Previous1 2 3 4 5…18Next

Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	57953980	57956255	57953980	ID=MS.gene90674
chr5.2	mRNA	57953980	57956255	57953980	ID=MS.gene90674.t1;Parent=MS.gene90674
chr5.2	exon	57953980	57955180	57953980	ID=MS.gene90674.t1.exon1;Parent=MS.gene90674.t1
chr5.2	CDS	57953980	57955180	57953980	ID=cds.MS.gene90674.t1;Parent=MS.gene90674.t1
chr5.2	exon	57955639	57956255	57955639	ID=MS.gene90674.t1.exon2;Parent=MS.gene90674.t1
chr5.2	CDS	57955639	57956255	57955639	ID=cds.MS.gene90674.t1;Parent=MS.gene90674.t1

Gene Sequence

>MS.gene90674

ATGAAGTTCCAATTCTTCATTGTTCCATTTTTTCTTCTAAGCATCATATCATCTCTCTTTAACTTGACTCTAGCTGACTTAAACTCAGACAAAAATTCTCTCCTTGAATTCTCTTCTACTCTCCCACATGCCTTAAGATTGAACTGGAATAACTCAACTCCAGTTTGCACTTCATGGATTGGCATAACTTGTAACCAAAATGAAACTAATGTCATAAGCATCCATCTTCCGGGAATTGGATTAAAGGGTTCCATTCCAAACAACAGCAGCCTAGGAAAACTTGATTCCCTTAGAATCCTAAGCCTTCATTCAAATGAACTTAGTGGAAATCTTCCATCTAACATTCTCTCTATTCCTTCCCTGCAATATGTCAATCTTCAACATAATAATTTCACAGGCCTAATCCCTTCTTCTATCTCCTCAAAACTCATTGCATTGGATCTTTCCTTTAACTCTTTCTTTGGAGCTATTCCTGTATTCAACCTTACTAGGCTAAAATACTTGAATTTGAGCTTTAATAACTTGAATGGTTCAATTCCATTTTCTATTAATCATTTCCCTAACAGTTCTTTTGTTGGAAACTCTCTCTTATGTGGTTCACCTCTCAAAAATTGTTCTACAGTCTCTCCTTCTCCATCTCCTTCTCCGTCAACTACTCGATATCATAAGTCTACAACTTCAAAGAAATTCTTTGGAGTAGCTTCTATACTTGCTTTTGCAATGGGAGGAATAGCCTTTCTTTCTCTCATAGTTTTGGTGATCTTTGTGTGTTTTTTTAAGAAGAGAAAGAGTAACAGCAGTGATGATATACCGAAAGGAAAGACGAAGAATGAGGATTCAATTTCAAAAAGTTTTGAGAGTGAAGTGTTGGAGCATGAAAGGAACAAATTGTTCTTCTTTGAGGGTTGTTCTTATAGTTTTGACCTTGAAGACTTGTTGAAGGCTTCAGCTGAAGTACTTGGAAAAGGAAGCTATGGAACAACATACAAGGCTAAATTGGAGGAAGGACTGACAATTGTGGTTAAAAGGTTAAGAGAAGTTGTGGTCGGAAAGAAGGAGTTCGAGCAACAGATGGAGGTTGTTGGAAGAATTGGAAGACATCCTAATGTCATACCACTTAGAGCTTATTACTATTCCAAAGATGAGAAACTTCTTGTTTATGACTACATGCTAGGTGGAAGCTTGTTTTCGTTACTTCATGGTATGTTTTCCATTCATATATTTCTCTCTTTTTGTTTCATTAGTTCATAAATCCACCTCTTATATTAAAAAAATGTGTTTATTTTTTGACTGCATTAGGTTTAATTAACTACTCTTGTGAAAAGTAAACCAAAATGTTAAACTTAAAGATTAGACTTTACATGAGCATAAAGTAACTTCTATATGAATGGCGTCTATCATGATAGTAAAAAACAGTCCGCGACAGCAATTGCGGCCATGATATCAAGGCTTTTGATGTCTGTATGAAAACATCGCGACAGCAAGAGTAACTGTATCAAGTATATTTGAAAACGAATTTTCCACAATATCAAGGATAGTGGCATCAAATTTTAAAACATTGGTGTATATTAGACACAGTCAATAATATGAAACATAATAGGACTTAAAATTCCTATTGTTCTATTATTCTAATATGTCCTCAATTTTTAAACAACATAGGAAACAGGGGTGAAGGAAGAAATCCATTAAACTGGAATTCAAGACTGAAGATTGCGCTGGGAGCTGCCAAAGGAATTGCTTCCATCCACAAAGAGGGAGGTCCAAAATATTTTCATGGCAACATCAAGTCGACCAATGTACTCATAACACAAGAACTTGATGGTTGGATCACTGATGTTGGACTTACTCCCCTTATGAGCACCTTATCAACCATGTCAAGATCCAACGGATACCGTGCTCCAGAATTAACCGAATCAAGGAAGATTGCCACTCAGAAGAGTGATGTTTACAGCTTTGGTGTAATCCTTCTTGAAATGCTTACAGGGAAGATTCCATTAGGATATTCTGGTTATGATCATGACATGGTTGATCTTCCAAGGTGGGTTAGGTCAGTGGTTCACGAGGAATGGACGGCTGAAGTTTTCGATGAGGAGATGATTAGAGGTGGAGAGTATGTTGAAGAGGAGATGGTGCAGATGCTTCAGATTGCATTGGCTTGTGTGTCAAAGGTGGTAGATAATAGGCCAACAATGGATGAAGTTATTAGAAACATAGTAGAAATTAGGCACCCTGAGTTGAAGAAAAGTACATCTTCTGAATCTGAATCTAATGTATAA

Protein sequence

>MS.gene90674.t1

MKFQFFIVPFFLLSIISSLFNLTLADLNSDKNSLLEFSSTLPHALRLNWNNSTPVCTSWIGITCNQNETNVISIHLPGIGLKGSIPNNSSLGKLDSLRILSLHSNELSGNLPSNILSIPSLQYVNLQHNNFTGLIPSSISSKLIALDLSFNSFFGAIPVFNLTRLKYLNLSFNNLNGSIPFSINHFPNSSFVGNSLLCGSPLKNCSTVSPSPSPSPSTTRYHKSTTSKKFFGVASILAFAMGGIAFLSLIVLVIFVCFFKKRKSNSSDDIPKGKTKNEDSISKSFESEVLEHERNKLFFFEGCSYSFDLEDLLKASAEVLGKGSYGTTYKAKLEEGLTIVVKRLREVVVGKKEFEQQMEVVGRIGRHPNVIPLRAYYYSKDEKLLVYDYMLGGSLFSLLHGNRGEGRNPLNWNSRLKIALGAAKGIASIHKEGGPKYFHGNIKSTNVLITQELDGWITDVGLTPLMSTLSTMSRSNGYRAPELTESRKIATQKSDVYSFGVILLEMLTGKIPLGYSGYDHDMVDLPRWVRSVVHEEWTAEVFDEEMIRGGEYVEEEMVQMLQIALACVSKVVDNRPTMDEVIRNIVEIRHPELKKSTSSESESNV