Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91276.t1 | XP_024631749.1 | 94 | 134 | 8 | 0 | 1 | 134 | 363 | 496 | 5.90E-69 | 270 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91276.t1 | Q7TMR0 | 41.2 | 131 | 71 | 2 | 1 | 130 | 365 | 490 | 9.3e-23 | 107.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91276.t1 | A0A396JGE8 | 94.0 | 134 | 8 | 0 | 1 | 134 | 363 | 496 | 4.2e-69 | 270.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049488 | MS.gene91276 | 0.80161 | 8.30E-49 | -1.69E-46 |
MS.gene050400 | MS.gene91276 | 0.820821 | 5.60E-53 | -1.69E-46 |
MS.gene050670 | MS.gene91276 | 0.804916 | 1.72E-49 | -1.69E-46 |
MS.gene051525 | MS.gene91276 | 0.816902 | 4.35E-52 | -1.69E-46 |
MS.gene052011 | MS.gene91276 | -0.816764 | 4.67E-52 | -1.69E-46 |
MS.gene052136 | MS.gene91276 | 0.801764 | 7.72E-49 | -1.69E-46 |
MS.gene052253 | MS.gene91276 | 0.83639 | 9.63E-57 | -1.69E-46 |
MS.gene052346 | MS.gene91276 | 0.806257 | 8.98E-50 | -1.69E-46 |
MS.gene052414 | MS.gene91276 | 0.808509 | 2.99E-50 | -1.69E-46 |
MS.gene053169 | MS.gene91276 | 0.809049 | 2.29E-50 | -1.69E-46 |
MS.gene053758 | MS.gene91276 | 0.801574 | 8.44E-49 | -1.69E-46 |
MS.gene054102 | MS.gene91276 | 0.805437 | 1.34E-49 | -1.69E-46 |
MS.gene054349 | MS.gene91276 | 0.808169 | 3.53E-50 | -1.69E-46 |
MS.gene054556 | MS.gene91276 | 0.814287 | 1.66E-51 | -1.69E-46 |
MS.gene055116 | MS.gene91276 | 0.809043 | 2.30E-50 | -1.69E-46 |
MS.gene055369 | MS.gene91276 | 0.801068 | 1.07E-48 | -1.69E-46 |
MS.gene055741 | MS.gene91276 | 0.801448 | 8.96E-49 | -1.69E-46 |
MS.gene055744 | MS.gene91276 | 0.807259 | 5.52E-50 | -1.69E-46 |
MS.gene056233 | MS.gene91276 | 0.811993 | 5.30E-51 | -1.69E-46 |
MS.gene056511 | MS.gene91276 | 0.806407 | 8.35E-50 | -1.69E-46 |
MS.gene056514 | MS.gene91276 | 0.822691 | 2.07E-53 | -1.69E-46 |
MS.gene056877 | MS.gene91276 | 0.823479 | 1.35E-53 | -1.69E-46 |
MS.gene057124 | MS.gene91276 | 0.800884 | 1.17E-48 | -1.69E-46 |
MS.gene057749 | MS.gene91276 | 0.823158 | 1.61E-53 | -1.69E-46 |
MS.gene057823 | MS.gene91276 | 0.811425 | 7.05E-51 | -1.69E-46 |
MS.gene057825 | MS.gene91276 | 0.824241 | 8.98E-54 | -1.69E-46 |
MS.gene058007 | MS.gene91276 | 0.820307 | 7.35E-53 | -1.69E-46 |
MS.gene05886 | MS.gene91276 | 0.823356 | 1.45E-53 | -1.69E-46 |
MS.gene059011 | MS.gene91276 | 0.832582 | 8.71E-56 | -1.69E-46 |
MS.gene059420 | MS.gene91276 | 0.811052 | 8.49E-51 | -1.69E-46 |
MS.gene059674 | MS.gene91276 | 0.803294 | 3.73E-49 | -1.69E-46 |
MS.gene060403 | MS.gene91276 | 0.802709 | 4.93E-49 | -1.69E-46 |
MS.gene060485 | MS.gene91276 | 0.803746 | 3.01E-49 | -1.69E-46 |
MS.gene061154 | MS.gene91276 | 0.808104 | 3.65E-50 | -1.69E-46 |
MS.gene061214 | MS.gene91276 | 0.817973 | 2.50E-52 | -1.69E-46 |
MS.gene061215 | MS.gene91276 | 0.818797 | 1.62E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91276.t1 | MTR_2g084535 | 90.000 | 140 | 8 | 1 | 1 | 134 | 363 | 502 | 4.56e-87 | 262 |
MS.gene91276.t1 | MTR_2g075300 | 64.567 | 127 | 45 | 0 | 1 | 127 | 348 | 474 | 2.41e-59 | 190 |
MS.gene91276.t1 | MTR_7g105400 | 50.382 | 131 | 64 | 1 | 1 | 130 | 368 | 498 | 1.13e-41 | 144 |
MS.gene91276.t1 | MTR_4g097590 | 50.781 | 128 | 62 | 1 | 1 | 127 | 391 | 518 | 1.82e-38 | 136 |
MS.gene91276.t1 | MTR_7g105390 | 45.113 | 133 | 72 | 1 | 1 | 132 | 334 | 466 | 1.97e-34 | 124 |
MS.gene91276.t1 | MTR_7g105390 | 45.113 | 133 | 72 | 1 | 1 | 132 | 368 | 500 | 3.05e-34 | 124 |
MS.gene91276.t1 | MTR_2g078180 | 63.415 | 41 | 15 | 0 | 91 | 131 | 119 | 159 | 1.41e-11 | 58.9 |
MS.gene91276.t1 | MTR_2g075270 | 46.154 | 52 | 27 | 1 | 76 | 127 | 32 | 82 | 2.65e-11 | 56.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91276.t1 | AT5G22860 | 53.333 | 135 | 62 | 1 | 1 | 134 | 365 | 499 | 2.40e-47 | 159 |
MS.gene91276.t1 | AT2G24280 | 52.308 | 130 | 62 | 0 | 1 | 130 | 361 | 490 | 6.58e-44 | 150 |
MS.gene91276.t1 | AT5G65760 | 46.154 | 130 | 69 | 1 | 1 | 129 | 374 | 503 | 9.49e-36 | 128 |
MS.gene91276.t1 | AT5G22860 | 54.839 | 93 | 41 | 1 | 1 | 92 | 365 | 457 | 1.52e-30 | 114 |
MS.gene91276.t1 | AT5G22860 | 57.333 | 75 | 31 | 1 | 1 | 74 | 365 | 439 | 6.47e-25 | 98.6 |
MS.gene91276.t1 | AT5G22860 | 57.333 | 75 | 31 | 1 | 1 | 74 | 365 | 439 | 6.47e-25 | 98.6 |
MS.gene91276.t1 | AT2G24280 | 55.405 | 74 | 33 | 0 | 1 | 74 | 361 | 434 | 5.21e-23 | 93.2 |
Find 30 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTGGATTACTACTTATTA+TGG | 0.189882 | 2.3:-13469395 | MS.gene91276:CDS |
AAACGAGTTCTTCAAAAGTT+TGG | 0.309801 | 2.3:-13468915 | MS.gene91276:CDS |
TATTGCAGGATCCCATTGTT+TGG | 0.351682 | 2.3:-13468034 | MS.gene91276:intron |
GGCCAGTATTATATTGATCT+TGG | 0.358230 | 2.3:-13467928 | MS.gene91276:CDS |
CGTTGTTCAATCAACCATCT+TGG | 0.362655 | 2.3:+13467985 | None:intergenic |
GCTTACCCGGCACTACTATA+AGG | 0.362908 | 2.3:+13468858 | None:intergenic |
CCGCAACAAGACTCTTTGAT+AGG | 0.388564 | 2.3:+13468733 | None:intergenic |
GAAAGATGCAAGAAAGAATA+TGG | 0.398219 | 2.3:-13469434 | MS.gene91276:CDS |
GTGTCTCACCTCGCCCTCAT+TGG | 0.398503 | 2.3:-13469412 | MS.gene91276:CDS |
ACAAATCTCTTTAAGTCAAA+AGG | 0.401588 | 2.3:+13469458 | None:intergenic |
CACCAAGATCAATATAATAC+TGG | 0.419795 | 2.3:+13467926 | None:intergenic |
AAAGATCCTTATAGTAGTGC+CGG | 0.462281 | 2.3:-13468864 | MS.gene91276:CDS |
ATGGTGATGCCTTTCGCTAT+AGG | 0.480405 | 2.3:-13469506 | MS.gene91276:CDS |
ATTGATCTTGGTGCACTCCA+TGG | 0.511982 | 2.3:-13467916 | None:intergenic |
AGATAGAATATCCAAACAAT+GGG | 0.517359 | 2.3:+13468023 | None:intergenic |
GTTGCGGTCCATGCGATCAA+TGG | 0.519229 | 2.3:-13468717 | MS.gene91276:intron |
AAGATAGAATATCCAAACAA+TGG | 0.524080 | 2.3:+13468022 | None:intergenic |
GAGATTATTCAAGAGTGGAT+TGG | 0.526156 | 2.3:-13467949 | MS.gene91276:CDS |
CTCTTTAAGTCAAAAGGAGA+AGG | 0.546964 | 2.3:+13469464 | None:intergenic |
CAAAAGAAAGTGATCCAAGA+TGG | 0.547883 | 2.3:-13467999 | MS.gene91276:CDS |
AAGATCCTTATAGTAGTGCC+GGG | 0.557200 | 2.3:-13468863 | MS.gene91276:intron |
TGGATTACTACTTATTATGG+AGG | 0.567337 | 2.3:-13469392 | MS.gene91276:CDS |
GATTGAACAACGAAATAAAG+AGG | 0.581874 | 2.3:-13467974 | MS.gene91276:CDS |
AAGACATACCATTGATCGCA+TGG | 0.584348 | 2.3:+13468709 | None:intergenic |
AGGTCGAGATTATTCAAGAG+TGG | 0.591638 | 2.3:-13467954 | MS.gene91276:CDS |
AATAAGTAGTAATCCAATGA+GGG | 0.598968 | 2.3:+13469399 | None:intergenic |
GTAGTAATCCAATGAGGGCG+AGG | 0.600782 | 2.3:+13469404 | None:intergenic |
GTATCATTTCCTATAGCGAA+AGG | 0.619045 | 2.3:+13469497 | None:intergenic |
TAATAAGTAGTAATCCAATG+AGG | 0.619229 | 2.3:+13469398 | None:intergenic |
CCTATCAAAGAGTCTTGTTG+CGG | 0.666760 | 2.3:-13468733 | MS.gene91276:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATATTTATAATAATTTTA+AGG | + | chr2.3:13469158-13469177 | None:intergenic | 0.0% |
!! | TTATGTATGTAAATTTATAA+TGG | - | chr2.3:13468946-13468965 | MS.gene91276:intron | 10.0% |
!! | AAAAAAAGACATTTAAATCA+AGG | + | chr2.3:13468380-13468399 | None:intergenic | 15.0% |
!! | AAATAATTTAGTGACTAAAT+TGG | - | chr2.3:13469289-13469308 | MS.gene91276:intron | 15.0% |
!! | ATCAGTTAAGTTAAAATTTA+TGG | + | chr2.3:13468865-13468884 | None:intergenic | 15.0% |
!! | TTTATACTACTAAAATATTG+TGG | - | chr2.3:13469219-13469238 | MS.gene91276:intron | 15.0% |
!!! | CAATTCAATTTTGAATTTTA+TGG | + | chr2.3:13468592-13468611 | None:intergenic | 15.0% |
!!! | GATTTAAATGTCTTTTTTTA+AGG | - | chr2.3:13468381-13468400 | MS.gene91276:intron | 15.0% |
!!! | GTCTTGTTATATATATATAA+GGG | - | chr2.3:13468765-13468784 | MS.gene91276:intron | 15.0% |
!!! | TCTTGTTATATATATATAAG+GGG | - | chr2.3:13468766-13468785 | MS.gene91276:intron | 15.0% |
!!! | TGTCTTGTTATATATATATA+AGG | - | chr2.3:13468764-13468783 | MS.gene91276:intron | 15.0% |
!! | AATTATTACATCAAAGAAAG+AGG | - | chr2.3:13468136-13468155 | MS.gene91276:intron | 20.0% |
!! | CAATGTTATAAAATATTGCA+GGG | - | chr2.3:13468657-13468676 | MS.gene91276:intron | 20.0% |
!! | TAGACAATCTAAATTAATGT+AGG | + | chr2.3:13468169-13468188 | None:intergenic | 20.0% |
!!! | ACAAGAAATTAATTTTGTTG+TGG | - | chr2.3:13468463-13468482 | MS.gene91276:intron | 20.0% |
!!! | TGTTTTTTCTTGATAAAGAA+AGG | + | chr2.3:13469064-13469083 | None:intergenic | 20.0% |
! | AAGATAGAATATCCAAACAA+TGG | + | chr2.3:13469404-13469423 | None:intergenic | 25.0% |
! | AATAAGTAGTAATCCAATGA+GGG | + | chr2.3:13468027-13468046 | None:intergenic | 25.0% |
! | AATTTAGTGACTAAATTGGA+GGG | - | chr2.3:13469293-13469312 | MS.gene91276:intron | 25.0% |
! | ACAAATCTCTTTAAGTCAAA+AGG | + | chr2.3:13467968-13467987 | None:intergenic | 25.0% |
! | AGATAGAATATCCAAACAAT+GGG | + | chr2.3:13469403-13469422 | None:intergenic | 25.0% |
! | ATACATAAATGAAGTTGTCA+GGG | + | chr2.3:13468934-13468953 | None:intergenic | 25.0% |
! | ATAGACATTAATTCTATTGC+AGG | - | chr2.3:13469375-13469394 | MS.gene91276:intron | 25.0% |
! | CATTGGATTACTACTTATTA+TGG | - | chr2.3:13468028-13468047 | MS.gene91276:CDS | 25.0% |
! | GCAATGTTATAAAATATTGC+AGG | - | chr2.3:13468656-13468675 | MS.gene91276:intron | 25.0% |
! | TAATAAGTAGTAATCCAATG+AGG | + | chr2.3:13468028-13468047 | None:intergenic | 25.0% |
! | TAATTTAGTGACTAAATTGG+AGG | - | chr2.3:13469292-13469311 | MS.gene91276:intron | 25.0% |
! | TATCTGTCATGTTCTATAAT+TGG | + | chr2.3:13469094-13469113 | None:intergenic | 25.0% |
!! | AATATTGTGGACTAAATTGA+TGG | - | chr2.3:13469232-13469251 | MS.gene91276:intron | 25.0% |
!! | AGAAAAAAGAAGTACAAACA+TGG | + | chr2.3:13468057-13468076 | None:intergenic | 25.0% |
!! | AGCAACATTATATTTTCGAA+TGG | - | chr2.3:13468532-13468551 | MS.gene91276:intron | 25.0% |
!! | GATGGATCACATATATTTTA+AGG | - | chr2.3:13469250-13469269 | MS.gene91276:intron | 25.0% |
!!! | AACACTTTTTACACTTTTGA+AGG | + | chr2.3:13468284-13468303 | None:intergenic | 25.0% |
!!! | ACACCTTAATGTTTTTATGT+GGG | + | chr2.3:13468805-13468824 | None:intergenic | 25.0% |
!!! | TACACCTTAATGTTTTTATG+TGG | + | chr2.3:13468806-13468825 | None:intergenic | 25.0% |
!!! | TTTTGACTTAAAGAGATTTG+TGG | - | chr2.3:13467967-13467986 | MS.gene91276:CDS | 25.0% |
AAACGAGTTCTTCAAAAGTT+TGG | - | chr2.3:13468508-13468527 | MS.gene91276:intron | 30.0% | |
ACACCCACATAAAAACATTA+AGG | - | chr2.3:13468799-13468818 | MS.gene91276:intron | 30.0% | |
CACCAAGATCAATATAATAC+TGG | + | chr2.3:13469500-13469519 | None:intergenic | 30.0% | |
CATACATAAATGAAGTTGTC+AGG | + | chr2.3:13468935-13468954 | None:intergenic | 30.0% | |
GAAAGATGCAAGAAAGAATA+TGG | - | chr2.3:13467989-13468008 | MS.gene91276:CDS | 30.0% | |
GATTGAACAACGAAATAAAG+AGG | - | chr2.3:13469449-13469468 | MS.gene91276:CDS | 30.0% | |
TCTCAATAAAAAGAAGAGCT+AGG | + | chr2.3:13469034-13469053 | None:intergenic | 30.0% | |
TGGATTACTACTTATTATGG+AGG | - | chr2.3:13468031-13468050 | MS.gene91276:intron | 30.0% | |
!!! | TTTGTTGTGGTTTTGACTAA+TGG | - | chr2.3:13468476-13468495 | MS.gene91276:intron | 30.0% |
AAAGATCCTTATAGTAGTGC+CGG | - | chr2.3:13468559-13468578 | MS.gene91276:intron | 35.0% | |
AGCTAGGAAAAATAGAACGA+GGG | + | chr2.3:13469018-13469037 | None:intergenic | 35.0% | |
CAAAAGAAAGTGATCCAAGA+TGG | - | chr2.3:13469424-13469443 | MS.gene91276:CDS | 35.0% | |
CTCTTTAAGTCAAAAGGAGA+AGG | + | chr2.3:13467962-13467981 | None:intergenic | 35.0% | |
GAGATTATTCAAGAGTGGAT+TGG | - | chr2.3:13469474-13469493 | MS.gene91276:CDS | 35.0% | |
GGCCAGTATTATATTGATCT+TGG | - | chr2.3:13469495-13469514 | MS.gene91276:CDS | 35.0% | |
GTATCATTTCCTATAGCGAA+AGG | + | chr2.3:13467929-13467948 | None:intergenic | 35.0% | |
TGGACAAAGAAATACACTAG+TGG | + | chr2.3:13468845-13468864 | None:intergenic | 35.0% | |
! | TGAATTTTATGGTGCTTACC+CGG | + | chr2.3:13468581-13468600 | None:intergenic | 35.0% |
AAGACATACCATTGATCGCA+TGG | + | chr2.3:13468717-13468736 | None:intergenic | 40.0% | |
AAGATCCTTATAGTAGTGCC+GGG | - | chr2.3:13468560-13468579 | MS.gene91276:intron | 40.0% | |
AGGTCGAGATTATTCAAGAG+TGG | - | chr2.3:13469469-13469488 | MS.gene91276:CDS | 40.0% | |
CGTTGTTCAATCAACCATCT+TGG | + | chr2.3:13469441-13469460 | None:intergenic | 40.0% | |
GAGCTAGGAAAAATAGAACG+AGG | + | chr2.3:13469019-13469038 | None:intergenic | 40.0% | |
TATTGCAGGATCCCATTGTT+TGG | - | chr2.3:13469389-13469408 | MS.gene91276:CDS | 40.0% | |
!! | CCTATCAAAGAGTCTTGTTG+CGG | - | chr2.3:13468690-13468709 | MS.gene91276:intron | 40.0% |
!! | TGTTCTGAGGACAATGGTTA+AGG | + | chr2.3:13468338-13468357 | None:intergenic | 40.0% |
!!! | TTGTGGTTTTGACTAATGGC+AGG | - | chr2.3:13468480-13468499 | MS.gene91276:intron | 40.0% |
CCGCAACAAGACTCTTTGAT+AGG | + | chr2.3:13468693-13468712 | None:intergenic | 45.0% | |
TGCTCTCACAGTAGTGGTTA+AGG | - | chr2.3:13468216-13468235 | MS.gene91276:intron | 45.0% | |
TTAACCAGTGTCGTGTTCTG+AGG | + | chr2.3:13468351-13468370 | None:intergenic | 45.0% | |
! | ATGGTGATGCCTTTCGCTAT+AGG | - | chr2.3:13467917-13467936 | MS.gene91276:CDS | 45.0% |
!!! | TTTTTTTTTTTTTTAAAGAA+TGG | - | chr2.3:13468739-13468758 | MS.gene91276:CDS | 5.0% |
AACCAGTGCTCTCACAGTAG+TGG | - | chr2.3:13468210-13468229 | MS.gene91276:intron | 50.0% | |
GCTTACCCGGCACTACTATA+AGG | + | chr2.3:13468568-13468587 | None:intergenic | 50.0% | |
GTAGTAATCCAATGAGGGCG+AGG | + | chr2.3:13468022-13468041 | None:intergenic | 50.0% | |
TTGTCCTCAGAACACGACAC+TGG | - | chr2.3:13468344-13468363 | MS.gene91276:intron | 50.0% | |
! | AACCACTACTGTGAGAGCAC+TGG | + | chr2.3:13468215-13468234 | None:intergenic | 50.0% |
!! | GTGTCGTGTTCTGAGGACAA+TGG | + | chr2.3:13468344-13468363 | None:intergenic | 50.0% |
GTTGCGGTCCATGCGATCAA+TGG | - | chr2.3:13468706-13468725 | MS.gene91276:intron | 55.0% | |
GTGTCTCACCTCGCCCTCAT+TGG | - | chr2.3:13468011-13468030 | MS.gene91276:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 13467917 | 13469528 | 13467917 | ID=MS.gene91276 |
chr2.3 | mRNA | 13467917 | 13469528 | 13467917 | ID=MS.gene91276.t1;Parent=MS.gene91276 |
chr2.3 | exon | 13469388 | 13469528 | 13469388 | ID=MS.gene91276.t1.exon1;Parent=MS.gene91276.t1 |
chr2.3 | CDS | 13469388 | 13469528 | 13469388 | ID=cds.MS.gene91276.t1;Parent=MS.gene91276.t1 |
chr2.3 | exon | 13468864 | 13468943 | 13468864 | ID=MS.gene91276.t1.exon2;Parent=MS.gene91276.t1 |
chr2.3 | CDS | 13468864 | 13468943 | 13468864 | ID=cds.MS.gene91276.t1;Parent=MS.gene91276.t1 |
chr2.3 | exon | 13468718 | 13468767 | 13468718 | ID=MS.gene91276.t1.exon3;Parent=MS.gene91276.t1 |
chr2.3 | CDS | 13468718 | 13468767 | 13468718 | ID=cds.MS.gene91276.t1;Parent=MS.gene91276.t1 |
chr2.3 | exon | 13467917 | 13468048 | 13467917 | ID=MS.gene91276.t1.exon4;Parent=MS.gene91276.t1 |
chr2.3 | CDS | 13467917 | 13468048 | 13467917 | ID=cds.MS.gene91276.t1;Parent=MS.gene91276.t1 |
Gene Sequence |
Protein sequence |