Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91280.t1 | XP_013470014.1 | 97.9 | 288 | 6 | 0 | 1 | 288 | 1 | 288 | 1.10E-160 | 575.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91280.t1 | Q8VXY4 | 69.9 | 289 | 85 | 2 | 1 | 288 | 1 | 288 | 6.5e-114 | 411.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91280.t1 | A0A072VQH6 | 97.9 | 288 | 6 | 0 | 1 | 288 | 1 | 288 | 7.7e-161 | 575.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene91280 | 0.80765 | 4.56E-50 | -1.69E-46 |
| MS.gene04987 | MS.gene91280 | 0.80188 | 7.31E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene91280 | 0.802285 | 6.03E-49 | -1.69E-46 |
| MS.gene050227 | MS.gene91280 | 0.806824 | 6.82E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene91280 | 0.806546 | 7.80E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene91280 | 0.802654 | 5.06E-49 | -1.69E-46 |
| MS.gene050303 | MS.gene91280 | 0.803598 | 3.23E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene91280 | -0.832004 | 1.21E-55 | -1.69E-46 |
| MS.gene050642 | MS.gene91280 | 0.853468 | 2.34E-61 | -1.69E-46 |
| MS.gene050987 | MS.gene91280 | 0.832265 | 1.04E-55 | -1.69E-46 |
| MS.gene051245 | MS.gene91280 | 0.809455 | 1.88E-50 | -1.69E-46 |
| MS.gene051983 | MS.gene91280 | 0.857355 | 1.73E-62 | -1.69E-46 |
| MS.gene052077 | MS.gene91280 | 0.800306 | 1.53E-48 | -1.69E-46 |
| MS.gene052176 | MS.gene91280 | 0.835117 | 2.02E-56 | -1.69E-46 |
| MS.gene052286 | MS.gene91280 | 0.813537 | 2.43E-51 | -1.69E-46 |
| MS.gene052302 | MS.gene91280 | 0.816328 | 5.85E-52 | -1.69E-46 |
| MS.gene052309 | MS.gene91280 | -0.816448 | 5.50E-52 | -1.69E-46 |
| MS.gene052376 | MS.gene91280 | 0.81853 | 1.87E-52 | -1.69E-46 |
| MS.gene052600 | MS.gene91280 | 0.803682 | 3.10E-49 | -1.69E-46 |
| MS.gene053188 | MS.gene91280 | 0.843709 | 1.19E-58 | -1.69E-46 |
| MS.gene053216 | MS.gene91280 | 0.823966 | 1.04E-53 | -1.69E-46 |
| MS.gene054537 | MS.gene91280 | 0.856563 | 2.96E-62 | -1.69E-46 |
| MS.gene054930 | MS.gene91280 | 0.805501 | 1.30E-49 | -1.69E-46 |
| MS.gene055441 | MS.gene91280 | 0.813683 | 2.26E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene91280 | 0.852807 | 3.62E-61 | -1.69E-46 |
| MS.gene057079 | MS.gene91280 | 0.822544 | 2.24E-53 | -1.69E-46 |
| MS.gene057754 | MS.gene91280 | 0.812347 | 4.44E-51 | -1.69E-46 |
| MS.gene058142 | MS.gene91280 | 0.806906 | 6.55E-50 | -1.69E-46 |
| MS.gene058182 | MS.gene91280 | 0.806314 | 8.73E-50 | -1.69E-46 |
| MS.gene058238 | MS.gene91280 | 0.816147 | 6.42E-52 | -1.69E-46 |
| MS.gene058399 | MS.gene91280 | 0.806461 | 8.14E-50 | -1.69E-46 |
| MS.gene059830 | MS.gene91280 | 0.805836 | 1.10E-49 | -1.69E-46 |
| MS.gene060084 | MS.gene91280 | 0.846256 | 2.44E-59 | -1.69E-46 |
| MS.gene060297 | MS.gene91280 | 0.95116 | 3.67E-109 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91280.t1 | MTR_1g107045 | 97.917 | 288 | 6 | 0 | 1 | 288 | 1 | 288 | 0.0 | 583 |
| MS.gene91280.t1 | MTR_1g107045 | 95.057 | 263 | 13 | 0 | 1 | 263 | 1 | 263 | 0.0 | 514 |
| MS.gene91280.t1 | MTR_1g107045 | 97.170 | 212 | 6 | 0 | 1 | 212 | 1 | 212 | 1.53e-152 | 426 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91280.t1 | AT4G34270 | 69.896 | 289 | 85 | 2 | 1 | 288 | 1 | 288 | 3.85e-147 | 414 |
Find 66 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTCTTCTCTTGCAATTC+TGG | 0.031355 | 1.3:+73294594 | MS.gene91280:CDS |
| AAAGCATTTGATGCTTTATA+TGG | 0.253715 | 1.3:+73293407 | MS.gene91280:CDS |
| GTCTTCCCAATGGAGATTTC+CGG | 0.291418 | 1.3:-73293987 | None:intergenic |
| GTTTCTTCTCTTGCAATTCT+GGG | 0.297974 | 1.3:+73294595 | MS.gene91280:CDS |
| GACATCTCATTTACCAGAAA+TGG | 0.306200 | 1.3:+73293325 | MS.gene91280:CDS |
| GCTTGACAACGGGGAGCTTC+TGG | 0.307643 | 1.3:-73295918 | None:intergenic |
| TTGTACTTCGGGAGAGTTGC+TGG | 0.338555 | 1.3:+73294884 | MS.gene91280:CDS |
| CGTATGCATTGTATATTTGC+TGG | 0.345472 | 1.3:+73294847 | MS.gene91280:CDS |
| CACAAATCCTGTTGTACTTC+GGG | 0.353319 | 1.3:+73294873 | MS.gene91280:CDS |
| GAGGATGAACTCGCTGATAA+TGG | 0.365438 | 1.3:+73294423 | MS.gene91280:CDS |
| ATTCTAAAACATTTGAATAG+TGG | 0.374855 | 1.3:+73293368 | MS.gene91280:CDS |
| AGCTTCTGGCTGATGATGCT+TGG | 0.388817 | 1.3:-73295904 | None:intergenic |
| TGAGTAGTACGCTTGACAAC+GGG | 0.397774 | 1.3:-73295928 | None:intergenic |
| GCCGCAGCAGGAACTTCAAC+AGG | 0.413392 | 1.3:-73293452 | None:intergenic |
| ATAGCACCGCTTCCACAATA+AGG | 0.414929 | 1.3:-73293753 | None:intergenic |
| AAGTTCCTGCTGCGGCGAAA+TGG | 0.423704 | 1.3:+73293459 | MS.gene91280:CDS |
| AAAGAAGCAAACGATGGAAT+TGG | 0.423986 | 1.3:+73293042 | None:intergenic |
| AACTTCCATTTCGCCGCAGC+AGG | 0.427787 | 1.3:-73293464 | None:intergenic |
| CGGCGAAATGGAAGTTTAGA+AGG | 0.438011 | 1.3:+73293471 | MS.gene91280:CDS |
| AGAAATTGATTTAGTTGCAT+TGG | 0.439296 | 1.3:+73294018 | MS.gene91280:CDS |
| CATTTGATGCTTTATATGGT+TGG | 0.439838 | 1.3:+73293411 | MS.gene91280:CDS |
| TGATTACTCTTGAACGGTTG+AGG | 0.452835 | 1.3:-73293182 | None:intergenic |
| CAACTCTCCCGAAGTACAAC+AGG | 0.458548 | 1.3:-73294880 | None:intergenic |
| TCTAATATCACTTCCTCAAA+GGG | 0.462313 | 1.3:-73293708 | None:intergenic |
| AACGGTTGAGGAGTTGAGAA+TGG | 0.463074 | 1.3:-73293170 | None:intergenic |
| TTATACGCTGCAGAATCAAA+AGG | 0.466150 | 1.3:-73295877 | None:intergenic |
| ATAGAAAAGTATAGGCTCCT+TGG | 0.468051 | 1.3:-73294044 | None:intergenic |
| CATGGATGCGAATGCCTCTC+CGG | 0.468671 | 1.3:-73293120 | None:intergenic |
| AGAGAGTCATGCCAAGCTCT+TGG | 0.468773 | 1.3:+73294573 | MS.gene91280:intron |
| GTCACTTCTTACTGTAAAAG+TGG | 0.472430 | 1.3:+73294449 | MS.gene91280:CDS |
| CTAATACAGCTTAGAGTTGA+CGG | 0.476886 | 1.3:+73294799 | MS.gene91280:intron |
| AAGTCTTCGACGACGGTGGC+CGG | 0.477533 | 1.3:+73293101 | MS.gene91280:CDS |
| AGAATCTACATTTCAAGCTC+TGG | 0.478818 | 1.3:+73294909 | MS.gene91280:CDS |
| ACAAAGATTTCTGAGGAAAC+CGG | 0.482719 | 1.3:+73293968 | MS.gene91280:CDS |
| ATCTAATATCACTTCCTCAA+AGG | 0.487831 | 1.3:-73293709 | None:intergenic |
| CGGAGAGGCATTCGCATCCA+TGG | 0.489412 | 1.3:+73293121 | MS.gene91280:CDS |
| GGCGCTGAAGTCTTCGACGA+CGG | 0.491989 | 1.3:+73293094 | MS.gene91280:CDS |
| GCACAAATCCTGTTGTACTT+CGG | 0.507906 | 1.3:+73294872 | MS.gene91280:CDS |
| AGGAAACCGGAAATCTCCAT+TGG | 0.511936 | 1.3:+73293981 | MS.gene91280:CDS |
| TACAGCCTTATAACTTCAAG+AGG | 0.516728 | 1.3:-73295965 | None:intergenic |
| ACAACGCCTTATTGTGGAAG+CGG | 0.520421 | 1.3:+73293747 | MS.gene91280:CDS |
| AATGTGCAGCAAGCCCTTTG+AGG | 0.520495 | 1.3:+73293695 | MS.gene91280:intron |
| ACCTCATCATAGAAAAGTAT+AGG | 0.526447 | 1.3:-73294052 | None:intergenic |
| CTTCCTTGCAGTCTTCCCAA+TGG | 0.528278 | 1.3:-73293997 | None:intergenic |
| TTTAGTTGCATTGGCATCCA+AGG | 0.540509 | 1.3:+73294027 | MS.gene91280:CDS |
| AAGAGAAGAAACCAAGAGCT+TGG | 0.554191 | 1.3:-73294584 | None:intergenic |
| GTCGAAGACTTCAGCGCCGG+CGG | 0.562344 | 1.3:-73293089 | None:intergenic |
| TACATTTCAAGCTCTGGCTG+CGG | 0.563110 | 1.3:+73294915 | MS.gene91280:CDS |
| GAGGCATTCGCATCCATGGT+TGG | 0.565923 | 1.3:+73293125 | MS.gene91280:CDS |
| TCTCCATTGGGAAGACTGCA+AGG | 0.572211 | 1.3:+73293994 | MS.gene91280:CDS |
| GGAAACCGGAAATCTCCATT+GGG | 0.574133 | 1.3:+73293982 | MS.gene91280:CDS |
| TGAACAGGTGGTGCTATATG+AGG | 0.576020 | 1.3:+73294404 | MS.gene91280:intron |
| TATACGCTGCAGAATCAAAA+GGG | 0.580871 | 1.3:-73295876 | None:intergenic |
| ACATTTACAACGCCTTATTG+TGG | 0.581460 | 1.3:+73293741 | MS.gene91280:CDS |
| TGGAATTGATTACTCTTGAA+CGG | 0.589845 | 1.3:-73293188 | None:intergenic |
| GTCGTCGAAGACTTCAGCGC+CGG | 0.601946 | 1.3:-73293092 | None:intergenic |
| TTCGACGACGGTGGCCGGAG+AGG | 0.613847 | 1.3:+73293106 | MS.gene91280:CDS |
| TTGAGTAGTACGCTTGACAA+CGG | 0.615166 | 1.3:-73295929 | None:intergenic |
| GAGAACGACTTGAAAGCCGC+CGG | 0.625524 | 1.3:+73293073 | MS.gene91280:CDS |
| ACCTGTTGAAGTTCCTGCTG+CGG | 0.630692 | 1.3:+73293451 | MS.gene91280:CDS |
| GCAGCAGGAACTTCAACAGG+TGG | 0.641693 | 1.3:-73293449 | None:intergenic |
| GCTGAAGTCTTCGACGACGG+TGG | 0.644989 | 1.3:+73293097 | MS.gene91280:CDS |
| GAATGGGACAAAGATTTCTG+AGG | 0.645664 | 1.3:+73293961 | MS.gene91280:intron |
| GAGACTCGATCAACCAACCA+TGG | 0.651642 | 1.3:-73293138 | None:intergenic |
| GAGTAGTACGCTTGACAACG+GGG | 0.687708 | 1.3:-73295927 | None:intergenic |
| ACGCTGCAGAATCAAAAGGG+TGG | 0.704813 | 1.3:-73295873 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATGGTATTTAATTTTTTA+TGG | + | chr1.3:73293936-73293955 | MS.gene91280:intron | 10.0% |
| !! | ATTCAACATTAAATTTCAAT+GGG | - | chr1.3:73295546-73295565 | None:intergenic | 15.0% |
| !! | TATTCAACATTAAATTTCAA+TGG | - | chr1.3:73295547-73295566 | None:intergenic | 15.0% |
| !!! | TTAATTTTTTATGGTAGAAT+GGG | + | chr1.3:73293945-73293964 | MS.gene91280:intron | 15.0% |
| !!! | TTTAATTTTTTATGGTAGAA+TGG | + | chr1.3:73293944-73293963 | MS.gene91280:intron | 15.0% |
| !! | AATATAATATGAGTCTATCA+AGG | - | chr1.3:73295699-73295718 | None:intergenic | 20.0% |
| !! | ATGACTCAAATAAATGAAAA+AGG | - | chr1.3:73293807-73293826 | None:intergenic | 20.0% |
| !! | ATTAAAATGAAAACATAGTG+AGG | - | chr1.3:73295729-73295748 | None:intergenic | 20.0% |
| !! | CATACTTCCAATTAAATTAA+TGG | - | chr1.3:73295511-73295530 | None:intergenic | 20.0% |
| !! | GAAAAAAAAAATGCAAGTTT+AGG | - | chr1.3:73294762-73294781 | None:intergenic | 20.0% |
| !! | GAAAATTTAGTTAGATTAGT+GGG | - | chr1.3:73295338-73295357 | None:intergenic | 20.0% |
| !! | GAGCATAAACTAAATAATTT+GGG | - | chr1.3:73295468-73295487 | None:intergenic | 20.0% |
| !! | GTATCTACCATTAATTTAAT+TGG | + | chr1.3:73295501-73295520 | MS.gene91280:intron | 20.0% |
| !! | TACTACAAAAAACATTATCA+GGG | - | chr1.3:73293832-73293851 | None:intergenic | 20.0% |
| !! | TGAGCATAAACTAAATAATT+TGG | - | chr1.3:73295469-73295488 | None:intergenic | 20.0% |
| !! | TTACTACAAAAAACATTATC+AGG | - | chr1.3:73293833-73293852 | None:intergenic | 20.0% |
| !!! | ATAATGTTTTTTGTAGTAAG+AGG | + | chr1.3:73293834-73293853 | MS.gene91280:intron | 20.0% |
| !!! | ATACATTTTCAGATTTAGTT+CGG | - | chr1.3:73295360-73295379 | None:intergenic | 20.0% |
| !!! | ATTCTAAAACATTTGAATAG+TGG | + | chr1.3:73293368-73293387 | MS.gene91280:CDS | 20.0% |
| !!! | ATTTATATTTTCTTCCTTGA+TGG | + | chr1.3:73294349-73294368 | MS.gene91280:intron | 20.0% |
| !!! | ATTTTTTCCAAGATAACATA+AGG | - | chr1.3:73293678-73293697 | None:intergenic | 20.0% |
| !!! | CAAATTAGTGTTACTTTTTT+AGG | + | chr1.3:73293553-73293572 | MS.gene91280:intron | 20.0% |
| !!! | TACTATTTTAGTATATGAAG+AGG | - | chr1.3:73294631-73294650 | None:intergenic | 20.0% |
| ! | AGTTTATGCTCATATCATAA+GGG | + | chr1.3:73295477-73295496 | MS.gene91280:intron | 25.0% |
| ! | ATAGTTTCATTGTCAACTAT+TGG | + | chr1.3:73294989-73295008 | MS.gene91280:intron | 25.0% |
| ! | ATGAAATGTAAATACCATCA+AGG | - | chr1.3:73294366-73294385 | None:intergenic | 25.0% |
| ! | CAATAATTTAGAGATCTCAA+GGG | - | chr1.3:73295601-73295620 | None:intergenic | 25.0% |
| ! | GGAAAATTTAGTTAGATTAG+TGG | - | chr1.3:73295339-73295358 | None:intergenic | 25.0% |
| ! | TAGTTTATGCTCATATCATA+AGG | + | chr1.3:73295476-73295495 | MS.gene91280:intron | 25.0% |
| ! | TAGTTTCATTGTCAACTATT+GGG | + | chr1.3:73294990-73295009 | MS.gene91280:intron | 25.0% |
| ! | TATTGAGATTGAAAAAGAAC+TGG | + | chr1.3:73293773-73293792 | MS.gene91280:CDS | 25.0% |
| ! | TGATTGATTACTTGAATAGT+TGG | + | chr1.3:73295134-73295153 | MS.gene91280:intron | 25.0% |
| !! | AAAGCATTTGATGCTTTATA+TGG | + | chr1.3:73293407-73293426 | MS.gene91280:CDS | 25.0% |
| !! | AAGTTTAGAAGGTATGAATT+TGG | + | chr1.3:73293482-73293501 | MS.gene91280:intron | 25.0% |
| !! | AGAAATTGATTTAGTTGCAT+TGG | + | chr1.3:73294018-73294037 | MS.gene91280:CDS | 25.0% |
| !! | ATTTACCAGAAATGGTTTTT+GGG | + | chr1.3:73293333-73293352 | MS.gene91280:CDS | 25.0% |
| !! | CTTTGACTTAGTAGATAAAA+AGG | - | chr1.3:73295269-73295288 | None:intergenic | 25.0% |
| !! | CTTTTTATCTACTAAGTCAA+AGG | + | chr1.3:73295267-73295286 | MS.gene91280:intron | 25.0% |
| !! | GCTTGCTAAATAATCATTTA+AGG | - | chr1.3:73294090-73294109 | None:intergenic | 25.0% |
| !! | TTACTTCGCTAAAAAGTTTT+CGG | - | chr1.3:73295199-73295218 | None:intergenic | 25.0% |
| !! | TTGTACTATGCTGTTATTTA+TGG | + | chr1.3:73293919-73293938 | MS.gene91280:intron | 25.0% |
| !!! | CTTGCATTTTTTTTTTCTTC+TGG | + | chr1.3:73294765-73294784 | MS.gene91280:intron | 25.0% |
| !!! | TAGGAATTGTTTTGAAAATC+TGG | + | chr1.3:73295081-73295100 | MS.gene91280:intron | 25.0% |
| AAAAGTGGTAAATACTGATC+TGG | + | chr1.3:73294464-73294483 | MS.gene91280:intron | 30.0% | |
| AATGAATTCTCATCATGAAC+AGG | + | chr1.3:73294389-73294408 | MS.gene91280:intron | 30.0% | |
| AATGTCAAACGTCTTTCTTA+TGG | + | chr1.3:73295818-73295837 | MS.gene91280:intron | 30.0% | |
| ACATTAATATCCAAGTCTGT+CGG | - | chr1.3:73294703-73294722 | None:intergenic | 30.0% | |
| AGCAGATAGTTGATTATGAA+AGG | + | chr1.3:73295236-73295255 | MS.gene91280:intron | 30.0% | |
| AGTAATCAATCACTATGCTA+AGG | - | chr1.3:73295126-73295145 | None:intergenic | 30.0% | |
| ATCTAATATCACTTCCTCAA+AGG | - | chr1.3:73293712-73293731 | None:intergenic | 30.0% | |
| CATTTGATGCTTTATATGGT+TGG | + | chr1.3:73293411-73293430 | MS.gene91280:CDS | 30.0% | |
| GAATACATCTATTCTGATTC+TGG | - | chr1.3:73294291-73294310 | None:intergenic | 30.0% | |
| GCAATAATTTAGAGATCTCA+AGG | - | chr1.3:73295602-73295621 | None:intergenic | 30.0% | |
| TCTAATATCACTTCCTCAAA+GGG | - | chr1.3:73293711-73293730 | None:intergenic | 30.0% | |
| TGGAATTGATTACTCTTGAA+CGG | - | chr1.3:73293191-73293210 | None:intergenic | 30.0% | |
| TTGAGAACAAGTCTTTGATT+AGG | + | chr1.3:73295411-73295430 | MS.gene91280:intron | 30.0% | |
| ! | ACCTCATCATAGAAAAGTAT+AGG | - | chr1.3:73294055-73294074 | None:intergenic | 30.0% |
| ! | ATACTTTTCTATGATGAGGT+AGG | + | chr1.3:73294055-73294074 | MS.gene91280:intron | 30.0% |
| ! | CATTTACCAGAAATGGTTTT+TGG | + | chr1.3:73293332-73293351 | MS.gene91280:CDS | 30.0% |
| ! | TTGAATAGTTGGTATAGAGA+AGG | + | chr1.3:73295145-73295164 | MS.gene91280:intron | 30.0% |
| ! | TTTACCAGAAATGGTTTTTG+GGG | + | chr1.3:73293334-73293353 | MS.gene91280:CDS | 30.0% |
| ! | TTTGAGTTAACAGATTGCAA+AGG | - | chr1.3:73295634-73295653 | None:intergenic | 30.0% |
| !!! | TGTTTTGAAAATCTGGCTTT+TGG | + | chr1.3:73295088-73295107 | MS.gene91280:intron | 30.0% |
| AAAGTTACATCATCAGCACT+TGG | - | chr1.3:73294543-73294562 | None:intergenic | 35.0% | |
| AAATGCAAGTTTAGGCAAAG+TGG | - | chr1.3:73294754-73294773 | None:intergenic | 35.0% | |
| ACAACTATAACGAACTGATG+GGG | - | chr1.3:73294176-73294195 | None:intergenic | 35.0% | |
| AGAATCTACATTTCAAGCTC+TGG | + | chr1.3:73294909-73294928 | MS.gene91280:CDS | 35.0% | |
| ATAACATAAGGCTAACAGCA+AGG | - | chr1.3:73293666-73293685 | None:intergenic | 35.0% | |
| ATACACTCATACTCGTTTCA+AGG | + | chr1.3:73295564-73295583 | MS.gene91280:intron | 35.0% | |
| ATCTGATGATTGATGCAGAA+CGG | + | chr1.3:73295850-73295869 | MS.gene91280:intron | 35.0% | |
| ATCTGCTTAGATCATTCTCA+TGG | - | chr1.3:73295223-73295242 | None:intergenic | 35.0% | |
| CACAACTATAACGAACTGAT+GGG | - | chr1.3:73294177-73294196 | None:intergenic | 35.0% | |
| CGTATGCATTGTATATTTGC+TGG | + | chr1.3:73294847-73294866 | MS.gene91280:CDS | 35.0% | |
| CGTGAAATTGTTGTCATTGA+TGG | + | chr1.3:73293276-73293295 | MS.gene91280:intron | 35.0% | |
| CTAATACAGCTTAGAGTTGA+CGG | + | chr1.3:73294799-73294818 | MS.gene91280:intron | 35.0% | |
| GACATCTCATTTACCAGAAA+TGG | + | chr1.3:73293325-73293344 | MS.gene91280:CDS | 35.0% | |
| GCATGGTCAACTAGTAAAAA+TGG | - | chr1.3:73294202-73294221 | None:intergenic | 35.0% | |
| GTCACTTCTTACTGTAAAAG+TGG | + | chr1.3:73294449-73294468 | MS.gene91280:CDS | 35.0% | |
| GTTTCACACTTTCACTAGTA+AGG | - | chr1.3:73294229-73294248 | None:intergenic | 35.0% | |
| GTTTCTTCTCTTGCAATTCT+GGG | + | chr1.3:73294595-73294614 | MS.gene91280:CDS | 35.0% | |
| TATACGCTGCAGAATCAAAA+GGG | - | chr1.3:73295879-73295898 | None:intergenic | 35.0% | |
| TATTCGTGTTTACTTAGCTG+AGG | + | chr1.3:73294306-73294325 | MS.gene91280:intron | 35.0% | |
| TCTGCTTAGATCATTCTCAT+GGG | - | chr1.3:73295222-73295241 | None:intergenic | 35.0% | |
| TGTAAAGGGAGAAAGAAAGT+GGG | + | chr1.3:73295016-73295035 | MS.gene91280:intron | 35.0% | |
| TTATACGCTGCAGAATCAAA+AGG | - | chr1.3:73295880-73295899 | None:intergenic | 35.0% | |
| TTCACTAGTAAGGATTTGCA+TGG | - | chr1.3:73294219-73294238 | None:intergenic | 35.0% | |
| ! | ACAAAGATTTCTGAGGAAAC+CGG | + | chr1.3:73293968-73293987 | MS.gene91280:CDS | 35.0% |
| ! | ACATTTACAACGCCTTATTG+TGG | + | chr1.3:73293741-73293760 | MS.gene91280:CDS | 35.0% |
| ! | ATAGAAAAGTATAGGCTCCT+TGG | - | chr1.3:73294047-73294066 | None:intergenic | 35.0% |
| ! | GCCTATACTTTTCTATGATG+AGG | + | chr1.3:73294051-73294070 | MS.gene91280:CDS | 35.0% |
| ! | TTTTCCCCAAAAACCATTTC+TGG | - | chr1.3:73293341-73293360 | None:intergenic | 35.0% |
| !! | ATCCCCACTTATTTTTCTGT+CGG | - | chr1.3:73295307-73295326 | None:intergenic | 35.0% |
| !! | ATTTCAATGGGTTGAGATCA+TGG | - | chr1.3:73295534-73295553 | None:intergenic | 35.0% |
| !! | CTGTTAGCCTTATGTTATCT+TGG | + | chr1.3:73293668-73293687 | MS.gene91280:intron | 35.0% |
| !! | GTGCTGATGATGTAACTTTT+TGG | + | chr1.3:73294544-73294563 | MS.gene91280:intron | 35.0% |
| AAGAGAAGAAACCAAGAGCT+TGG | - | chr1.3:73294587-73294606 | None:intergenic | 40.0% | |
| ACTTTGTACTGCTTTAGCAG+AGG | + | chr1.3:73295768-73295787 | MS.gene91280:intron | 40.0% | |
| AGATGAATGTGTGCGATGTT+TGG | - | chr1.3:73293211-73293230 | None:intergenic | 40.0% | |
| AGTGTTATGTTCAAGCCTCA+TGG | + | chr1.3:73295654-73295673 | MS.gene91280:intron | 40.0% | |
| CAACTATTGGGACGTGTAAA+GGG | + | chr1.3:73295002-73295021 | MS.gene91280:intron | 40.0% | |
| CACAAATCCTGTTGTACTTC+GGG | + | chr1.3:73294873-73294892 | MS.gene91280:CDS | 40.0% | |
| CACCGACAGAAAAATAAGTG+GGG | + | chr1.3:73295302-73295321 | MS.gene91280:intron | 40.0% | |
| GAATGGGACAAAGATTTCTG+AGG | + | chr1.3:73293961-73293980 | MS.gene91280:intron | 40.0% | |
| GAATTCTCATCATGAACAGG+TGG | + | chr1.3:73294392-73294411 | MS.gene91280:intron | 40.0% | |
| GCACAAATCCTGTTGTACTT+CGG | + | chr1.3:73294872-73294891 | MS.gene91280:CDS | 40.0% | |
| GCACAACTATAACGAACTGA+TGG | - | chr1.3:73294178-73294197 | None:intergenic | 40.0% | |
| GGTTTCTTCTCTTGCAATTC+TGG | + | chr1.3:73294594-73294613 | MS.gene91280:CDS | 40.0% | |
| GTGTAAAGGGAGAAAGAAAG+TGG | + | chr1.3:73295015-73295034 | MS.gene91280:intron | 40.0% | |
| GTTCTGCATCAATCATCAGA+TGG | - | chr1.3:73295851-73295870 | None:intergenic | 40.0% | |
| TCAACTATTGGGACGTGTAA+AGG | + | chr1.3:73295001-73295020 | MS.gene91280:intron | 40.0% | |
| TGATTACTCTTGAACGGTTG+AGG | - | chr1.3:73293185-73293204 | None:intergenic | 40.0% | |
| TTAAGTGAAGCTACGCAATG+TGG | + | chr1.3:73294670-73294689 | MS.gene91280:intron | 40.0% | |
| TTGAGTAGTACGCTTGACAA+CGG | - | chr1.3:73295932-73295951 | None:intergenic | 40.0% | |
| ! | GCACCGACAGAAAAATAAGT+GGG | + | chr1.3:73295301-73295320 | MS.gene91280:intron | 40.0% |
| ! | GTTGTCATTGATGGTTATGC+AGG | + | chr1.3:73293285-73293304 | MS.gene91280:intron | 40.0% |
| ! | TCATTGATGGTTATGCAGGT+GGG | + | chr1.3:73293289-73293308 | MS.gene91280:intron | 40.0% |
| ! | TGCACCGACAGAAAAATAAG+TGG | + | chr1.3:73295300-73295319 | MS.gene91280:intron | 40.0% |
| ! | TTTAGTTGCATTGGCATCCA+AGG | + | chr1.3:73294027-73294046 | MS.gene91280:CDS | 40.0% |
| AAAAACAGCCCTGACACAAG+GGG | - | chr1.3:73294112-73294131 | None:intergenic | 45.0% | |
| AACCACCTGTAGTTTCCATG+AGG | - | chr1.3:73295672-73295691 | None:intergenic | 45.0% | |
| AACGGTTGAGGAGTTGAGAA+TGG | - | chr1.3:73293173-73293192 | None:intergenic | 45.0% | |
| ACAAAAACAGCCCTGACACA+AGG | - | chr1.3:73294114-73294133 | None:intergenic | 45.0% | |
| AGCGTAAAGCACGGTAGAAA+AGG | - | chr1.3:73295047-73295066 | None:intergenic | 45.0% | |
| AGGAAACCGGAAATCTCCAT+TGG | + | chr1.3:73293981-73294000 | MS.gene91280:CDS | 45.0% | |
| ATAGCACCGCTTCCACAATA+AGG | - | chr1.3:73293756-73293775 | None:intergenic | 45.0% | |
| CAAAAACAGCCCTGACACAA+GGG | - | chr1.3:73294113-73294132 | None:intergenic | 45.0% | |
| CGGCGAAATGGAAGTTTAGA+AGG | + | chr1.3:73293471-73293490 | MS.gene91280:CDS | 45.0% | |
| GAGGATGAACTCGCTGATAA+TGG | + | chr1.3:73294423-73294442 | MS.gene91280:CDS | 45.0% | |
| GGAAACCGGAAATCTCCATT+GGG | + | chr1.3:73293982-73294001 | MS.gene91280:CDS | 45.0% | |
| GTCTTCCCAATGGAGATTTC+CGG | - | chr1.3:73293990-73294009 | None:intergenic | 45.0% | |
| TAGGCAAAGTGGTGTAAAGC+AGG | - | chr1.3:73294743-73294762 | None:intergenic | 45.0% | |
| TCAAGCCTCATGGAAACTAC+AGG | + | chr1.3:73295664-73295683 | MS.gene91280:intron | 45.0% | |
| TGAGTAGTACGCTTGACAAC+GGG | - | chr1.3:73295931-73295950 | None:intergenic | 45.0% | |
| ! | ACAACGCCTTATTGTGGAAG+CGG | + | chr1.3:73293747-73293766 | MS.gene91280:CDS | 45.0% |
| ! | ACGCTGAGCTAGTCTATCAT+AGG | + | chr1.3:73295062-73295081 | MS.gene91280:intron | 45.0% |
| ! | GTCATTGATGGTTATGCAGG+TGG | + | chr1.3:73293288-73293307 | MS.gene91280:intron | 45.0% |
| ! | TACATTTCAAGCTCTGGCTG+CGG | + | chr1.3:73294915-73294934 | MS.gene91280:CDS | 45.0% |
| !! | TGAACAGGTGGTGCTATATG+AGG | + | chr1.3:73294404-73294423 | MS.gene91280:intron | 45.0% |
| AATGTGCAGCAAGCCCTTTG+AGG | + | chr1.3:73293695-73293714 | MS.gene91280:intron | 50.0% | |
| ACCTGTTGAAGTTCCTGCTG+CGG | + | chr1.3:73293451-73293470 | MS.gene91280:CDS | 50.0% | |
| ACGCTGCAGAATCAAAAGGG+TGG | - | chr1.3:73295876-73295895 | None:intergenic | 50.0% | |
| AGAGAGTCATGCCAAGCTCT+TGG | + | chr1.3:73294573-73294592 | MS.gene91280:intron | 50.0% | |
| AGCCTCATGGAAACTACAGG+TGG | + | chr1.3:73295667-73295686 | MS.gene91280:intron | 50.0% | |
| CAACTCTCCCGAAGTACAAC+AGG | - | chr1.3:73294883-73294902 | None:intergenic | 50.0% | |
| CTTCCTTGCAGTCTTCCCAA+TGG | - | chr1.3:73294000-73294019 | None:intergenic | 50.0% | |
| GAGACTCGATCAACCAACCA+TGG | - | chr1.3:73293141-73293160 | None:intergenic | 50.0% | |
| GAGTAGTACGCTTGACAACG+GGG | - | chr1.3:73295930-73295949 | None:intergenic | 50.0% | |
| TCTCCATTGGGAAGACTGCA+AGG | + | chr1.3:73293994-73294013 | MS.gene91280:CDS | 50.0% | |
| TGGATTGCTTCCGACAGACT+TGG | + | chr1.3:73294690-73294709 | MS.gene91280:intron | 50.0% | |
| TTAGCAAGCCCCTTGTGTCA+GGG | + | chr1.3:73294101-73294120 | MS.gene91280:intron | 50.0% | |
| TTGTACTTCGGGAGAGTTGC+TGG | + | chr1.3:73294884-73294903 | MS.gene91280:CDS | 50.0% | |
| TTTAGCAAGCCCCTTGTGTC+AGG | + | chr1.3:73294100-73294119 | MS.gene91280:intron | 50.0% | |
| ! | AGCTTCTGGCTGATGATGCT+TGG | - | chr1.3:73295907-73295926 | None:intergenic | 50.0% |
| ! | GACTAGCTCAGCGTAAAGCA+CGG | - | chr1.3:73295056-73295075 | None:intergenic | 50.0% |
| AACTTCCATTTCGCCGCAGC+AGG | - | chr1.3:73293467-73293486 | None:intergenic | 55.0% | |
| AAGTTCCTGCTGCGGCGAAA+TGG | + | chr1.3:73293459-73293478 | MS.gene91280:CDS | 55.0% | |
| CATGGATGCGAATGCCTCTC+CGG | - | chr1.3:73293123-73293142 | None:intergenic | 55.0% | |
| GAGAACGACTTGAAAGCCGC+CGG | + | chr1.3:73293073-73293092 | MS.gene91280:CDS | 55.0% | |
| GCAGCAGGAACTTCAACAGG+TGG | - | chr1.3:73293452-73293471 | None:intergenic | 55.0% | |
| ! | GAGGCATTCGCATCCATGGT+TGG | + | chr1.3:73293125-73293144 | MS.gene91280:CDS | 55.0% |
| AAGTCTTCGACGACGGTGGC+CGG | + | chr1.3:73293101-73293120 | MS.gene91280:CDS | 60.0% | |
| GCCGCAGCAGGAACTTCAAC+AGG | - | chr1.3:73293455-73293474 | None:intergenic | 60.0% | |
| GCTGAAGTCTTCGACGACGG+TGG | + | chr1.3:73293097-73293116 | MS.gene91280:CDS | 60.0% | |
| GCTTGACAACGGGGAGCTTC+TGG | - | chr1.3:73295921-73295940 | None:intergenic | 60.0% | |
| GTCGTCGAAGACTTCAGCGC+CGG | - | chr1.3:73293095-73293114 | None:intergenic | 60.0% | |
| ! | GGCGCTGAAGTCTTCGACGA+CGG | + | chr1.3:73293094-73293113 | MS.gene91280:CDS | 60.0% |
| !! | CGGAGAGGCATTCGCATCCA+TGG | + | chr1.3:73293121-73293140 | MS.gene91280:CDS | 60.0% |
| ! | GTCGAAGACTTCAGCGCCGG+CGG | - | chr1.3:73293092-73293111 | None:intergenic | 65.0% |
| TTCGACGACGGTGGCCGGAG+AGG | + | chr1.3:73293106-73293125 | MS.gene91280:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 73293055 | 73295972 | 73293055 | ID=MS.gene91280 |
| chr1.3 | mRNA | 73293055 | 73295972 | 73293055 | ID=MS.gene91280.t1;Parent=MS.gene91280 |
| chr1.3 | exon | 73293055 | 73293197 | 73293055 | ID=MS.gene91280.t1.exon1;Parent=MS.gene91280.t1 |
| chr1.3 | CDS | 73293055 | 73293197 | 73293055 | ID=cds.MS.gene91280.t1;Parent=MS.gene91280.t1 |
| chr1.3 | exon | 73293307 | 73293492 | 73293307 | ID=MS.gene91280.t1.exon2;Parent=MS.gene91280.t1 |
| chr1.3 | CDS | 73293307 | 73293492 | 73293307 | ID=cds.MS.gene91280.t1;Parent=MS.gene91280.t1 |
| chr1.3 | exon | 73293704 | 73293794 | 73293704 | ID=MS.gene91280.t1.exon3;Parent=MS.gene91280.t1 |
| chr1.3 | CDS | 73293704 | 73293794 | 73293704 | ID=cds.MS.gene91280.t1;Parent=MS.gene91280.t1 |
| chr1.3 | exon | 73293962 | 73294072 | 73293962 | ID=MS.gene91280.t1.exon4;Parent=MS.gene91280.t1 |
| chr1.3 | CDS | 73293962 | 73294072 | 73293962 | ID=cds.MS.gene91280.t1;Parent=MS.gene91280.t1 |
| chr1.3 | exon | 73294411 | 73294470 | 73294411 | ID=MS.gene91280.t1.exon5;Parent=MS.gene91280.t1 |
| chr1.3 | CDS | 73294411 | 73294470 | 73294411 | ID=cds.MS.gene91280.t1;Parent=MS.gene91280.t1 |
| chr1.3 | exon | 73294575 | 73294616 | 73294575 | ID=MS.gene91280.t1.exon6;Parent=MS.gene91280.t1 |
| chr1.3 | CDS | 73294575 | 73294616 | 73294575 | ID=cds.MS.gene91280.t1;Parent=MS.gene91280.t1 |
| chr1.3 | exon | 73294808 | 73294936 | 73294808 | ID=MS.gene91280.t1.exon7;Parent=MS.gene91280.t1 |
| chr1.3 | CDS | 73294808 | 73294936 | 73294808 | ID=cds.MS.gene91280.t1;Parent=MS.gene91280.t1 |
| chr1.3 | exon | 73295868 | 73295972 | 73295868 | ID=MS.gene91280.t1.exon8;Parent=MS.gene91280.t1 |
| chr1.3 | CDS | 73295868 | 73295972 | 73295868 | ID=cds.MS.gene91280.t1;Parent=MS.gene91280.t1 |
| Gene Sequence |
| Protein sequence |
