Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92929.t1 | XP_003614112.1 | 98.2 | 170 | 3 | 0 | 1 | 170 | 1 | 170 | 1.00E-86 | 329.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92929.t1 | A4FV72 | 55.2 | 105 | 42 | 2 | 9 | 113 | 5 | 104 | 2.1e-27 | 123.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92929.t1 | B7FJM0 | 98.2 | 170 | 3 | 0 | 1 | 170 | 1 | 170 | 7.5e-87 | 329.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene92929 | 0.831477 | 1.63E-55 | -1.69E-46 |
| MS.gene049382 | MS.gene92929 | 0.814335 | 1.62E-51 | -1.69E-46 |
| MS.gene049756 | MS.gene92929 | 0.81507 | 1.12E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene92929 | 0.819479 | 1.14E-52 | -1.69E-46 |
| MS.gene050303 | MS.gene92929 | 0.811908 | 5.53E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene92929 | 0.834956 | 2.22E-56 | -1.69E-46 |
| MS.gene050815 | MS.gene92929 | 0.809729 | 1.64E-50 | -1.69E-46 |
| MS.gene050987 | MS.gene92929 | 0.822759 | 1.99E-53 | -1.69E-46 |
| MS.gene051180 | MS.gene92929 | 0.804644 | 1.96E-49 | -1.69E-46 |
| MS.gene051243 | MS.gene92929 | 0.82971 | 4.42E-55 | -1.69E-46 |
| MS.gene051789 | MS.gene92929 | 0.821581 | 3.74E-53 | -1.69E-46 |
| MS.gene052286 | MS.gene92929 | 0.833782 | 4.38E-56 | -1.69E-46 |
| MS.gene052302 | MS.gene92929 | 0.834756 | 2.49E-56 | -1.69E-46 |
| MS.gene052376 | MS.gene92929 | 0.837377 | 5.39E-57 | -1.69E-46 |
| MS.gene052665 | MS.gene92929 | 0.824335 | 8.53E-54 | -1.69E-46 |
| MS.gene052856 | MS.gene92929 | 0.822797 | 1.95E-53 | -1.69E-46 |
| MS.gene052858 | MS.gene92929 | 0.836597 | 8.52E-57 | -1.69E-46 |
| MS.gene052860 | MS.gene92929 | 0.838422 | 2.90E-57 | -1.69E-46 |
| MS.gene053188 | MS.gene92929 | 0.811501 | 6.78E-51 | -1.69E-46 |
| MS.gene053630 | MS.gene92929 | 0.80754 | 4.81E-50 | -1.69E-46 |
| MS.gene054537 | MS.gene92929 | 0.806448 | 8.19E-50 | -1.69E-46 |
| MS.gene054596 | MS.gene92929 | 0.806804 | 6.88E-50 | -1.69E-46 |
| MS.gene05462 | MS.gene92929 | 0.802027 | 6.82E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene92929 | 0.817689 | 2.89E-52 | -1.69E-46 |
| MS.gene055623 | MS.gene92929 | 0.807255 | 5.53E-50 | -1.69E-46 |
| MS.gene056760 | MS.gene92929 | 0.832577 | 8.73E-56 | -1.69E-46 |
| MS.gene057057 | MS.gene92929 | 0.80232 | 5.93E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene92929 | 0.803989 | 2.68E-49 | -1.69E-46 |
| MS.gene057140 | MS.gene92929 | 0.820844 | 5.53E-53 | -1.69E-46 |
| MS.gene057234 | MS.gene92929 | 0.812719 | 3.68E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene92929 | 0.800886 | 1.17E-48 | -1.69E-46 |
| MS.gene05795 | MS.gene92929 | 0.818164 | 2.26E-52 | -1.69E-46 |
| MS.gene058055 | MS.gene92929 | 0.80542 | 1.35E-49 | -1.69E-46 |
| MS.gene058182 | MS.gene92929 | 0.817194 | 3.74E-52 | -1.69E-46 |
| MS.gene058238 | MS.gene92929 | 0.805899 | 1.07E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene92929 | 0.807297 | 5.41E-50 | -1.69E-46 |
| MS.gene059317 | MS.gene92929 | 0.833377 | 5.52E-56 | -1.69E-46 |
| MS.gene05978 | MS.gene92929 | 0.824683 | 7.07E-54 | -1.69E-46 |
| MS.gene06001 | MS.gene92929 | 0.801179 | 1.02E-48 | -1.69E-46 |
| MS.gene060998 | MS.gene92929 | 0.81032 | 1.22E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92929.t1 | MTR_5g044970 | 98.235 | 170 | 3 | 0 | 1 | 170 | 1 | 170 | 5.17e-122 | 341 |
| MS.gene92929.t1 | MTR_3g080130 | 45.238 | 84 | 45 | 1 | 10 | 93 | 36 | 118 | 6.86e-16 | 70.5 |
| MS.gene92929.t1 | MTR_7g013740 | 42.667 | 75 | 43 | 0 | 12 | 86 | 42 | 116 | 8.57e-16 | 70.5 |
| MS.gene92929.t1 | MTR_7g013730 | 44.000 | 75 | 42 | 0 | 12 | 86 | 42 | 116 | 3.83e-15 | 70.9 |
| MS.gene92929.t1 | MTR_4g109540 | 36.905 | 84 | 53 | 0 | 3 | 86 | 35 | 118 | 5.85e-14 | 68.2 |
| MS.gene92929.t1 | MTR_3g084040 | 34.884 | 86 | 55 | 1 | 1 | 86 | 27 | 111 | 2.23e-13 | 64.3 |
| MS.gene92929.t1 | MTR_4g109540 | 40.000 | 75 | 45 | 0 | 12 | 86 | 52 | 126 | 2.72e-12 | 63.5 |
| MS.gene92929.t1 | MTR_4g070140 | 42.667 | 75 | 43 | 0 | 12 | 86 | 10 | 84 | 2.73e-12 | 62.4 |
| MS.gene92929.t1 | MTR_1g054675 | 38.947 | 95 | 53 | 1 | 10 | 99 | 43 | 137 | 5.62e-12 | 62.0 |
| MS.gene92929.t1 | MTR_7g105260 | 37.179 | 78 | 49 | 0 | 12 | 89 | 34 | 111 | 1.72e-11 | 59.3 |
| MS.gene92929.t1 | MTR_4g070080 | 41.333 | 75 | 44 | 0 | 12 | 86 | 8 | 82 | 1.94e-11 | 58.5 |
| MS.gene92929.t1 | MTR_3g025880 | 38.667 | 75 | 46 | 0 | 12 | 86 | 46 | 120 | 2.77e-11 | 61.2 |
| MS.gene92929.t1 | MTR_4g070080 | 41.333 | 75 | 44 | 0 | 12 | 86 | 8 | 82 | 4.21e-11 | 58.5 |
| MS.gene92929.t1 | MTR_4g070190 | 40.000 | 75 | 45 | 0 | 12 | 86 | 10 | 84 | 4.25e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92929.t1 | AT1G13690 | 82.209 | 163 | 28 | 1 | 9 | 170 | 12 | 174 | 8.25e-98 | 280 |
| MS.gene92929.t1 | AT5G61030 | 45.333 | 75 | 41 | 0 | 12 | 86 | 42 | 116 | 1.18e-16 | 75.9 |
| MS.gene92929.t1 | AT5G61030 | 45.333 | 75 | 41 | 0 | 12 | 86 | 42 | 116 | 1.18e-16 | 75.9 |
| MS.gene92929.t1 | AT3G08000 | 43.373 | 83 | 46 | 1 | 12 | 94 | 43 | 124 | 1.25e-16 | 72.8 |
| MS.gene92929.t1 | AT4G39260 | 42.529 | 87 | 48 | 1 | 12 | 98 | 8 | 92 | 6.55e-15 | 67.0 |
| MS.gene92929.t1 | AT4G13850 | 44.000 | 75 | 42 | 0 | 12 | 86 | 37 | 111 | 1.60e-13 | 64.3 |
| MS.gene92929.t1 | AT4G39260 | 44.000 | 75 | 42 | 0 | 12 | 86 | 8 | 82 | 1.89e-13 | 63.9 |
| MS.gene92929.t1 | AT4G13850 | 44.000 | 75 | 42 | 0 | 12 | 86 | 37 | 111 | 1.94e-13 | 64.3 |
| MS.gene92929.t1 | AT4G13850 | 44.000 | 75 | 42 | 0 | 12 | 86 | 37 | 111 | 2.33e-13 | 64.3 |
| MS.gene92929.t1 | AT4G13850 | 44.000 | 75 | 42 | 0 | 12 | 86 | 37 | 111 | 2.58e-13 | 64.3 |
| MS.gene92929.t1 | AT4G39260 | 44.000 | 75 | 42 | 0 | 12 | 86 | 8 | 82 | 4.58e-13 | 63.9 |
| MS.gene92929.t1 | AT1G74230 | 38.636 | 88 | 50 | 2 | 2 | 86 | 23 | 109 | 5.17e-13 | 65.5 |
| MS.gene92929.t1 | AT3G23830 | 41.333 | 75 | 44 | 0 | 12 | 86 | 37 | 111 | 1.25e-12 | 62.0 |
| MS.gene92929.t1 | AT3G23830 | 41.333 | 75 | 44 | 0 | 12 | 86 | 37 | 111 | 1.25e-12 | 62.0 |
| MS.gene92929.t1 | AT2G21660 | 39.286 | 84 | 51 | 0 | 3 | 86 | 1 | 84 | 2.73e-12 | 61.6 |
| MS.gene92929.t1 | AT2G21660 | 39.286 | 84 | 51 | 0 | 3 | 86 | 1 | 84 | 3.70e-12 | 61.6 |
| MS.gene92929.t1 | AT5G04280 | 38.202 | 89 | 52 | 1 | 1 | 89 | 1 | 86 | 4.07e-12 | 63.2 |
| MS.gene92929.t1 | AT4G13860 | 38.889 | 72 | 44 | 0 | 12 | 83 | 5 | 76 | 1.72e-11 | 57.8 |
| MS.gene92929.t1 | AT1G60650 | 35.714 | 84 | 54 | 0 | 6 | 89 | 8 | 91 | 7.29e-11 | 59.7 |
| MS.gene92929.t1 | AT1G60650 | 35.714 | 84 | 54 | 0 | 6 | 89 | 8 | 91 | 7.29e-11 | 59.7 |
Find 45 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACTTCCTGAAAAGATTA+AGG | 0.200027 | 5.1:+33521599 | MS.gene92929:CDS |
| ACGCAGAAGCATCGATCTTT+CGG | 0.361373 | 5.1:+33521483 | MS.gene92929:CDS |
| TTCCGCCGCCATGGATAATA+TGG | 0.365330 | 5.1:+33521536 | MS.gene92929:CDS |
| TTTCTCTCCTTCCCGCTCTT+CGG | 0.397348 | 5.1:-33523620 | None:intergenic |
| CGGAAGCATCTTCCCTTTCA+AGG | 0.410203 | 5.1:-33521518 | None:intergenic |
| CAGCTTTATTCTCTGCTTCG+AGG | 0.410867 | 5.1:-33523558 | None:intergenic |
| TTTGGGCGGATGCGGATACT+TGG | 0.419214 | 5.1:+33523500 | MS.gene92929:CDS |
| GCACTTCCTGAAAAGATTAA+GGG | 0.425176 | 5.1:+33521600 | MS.gene92929:CDS |
| CGTCGGTGGTTTAGCGGAAG+AGG | 0.445488 | 5.1:+33521383 | MS.gene92929:CDS |
| GAAGCAAGTAGCCGAAGAGC+GGG | 0.453125 | 5.1:+33523609 | MS.gene92929:CDS |
| ATCGATGCTTCTGCGTTGCT+TGG | 0.454782 | 5.1:-33521476 | None:intergenic |
| CTTCGTGACTTTCCTTGAAA+GGG | 0.466861 | 5.1:+33521506 | MS.gene92929:CDS |
| AGAGAATAAAGCTGCAATGC+TGG | 0.474659 | 5.1:+33523567 | MS.gene92929:CDS |
| GCTTCGTGACTTTCCTTGAA+AGG | 0.478500 | 5.1:+33521505 | MS.gene92929:CDS |
| CACGCGGCGTTCATACCCTT+CGG | 0.482040 | 5.1:+33521423 | MS.gene92929:CDS |
| TCTCTACGTCGGTGGTTTAG+CGG | 0.487229 | 5.1:+33521377 | MS.gene92929:CDS |
| AAGATTAAGGGTGGTGAACA+AGG | 0.491175 | 5.1:+33521612 | MS.gene92929:CDS |
| ATGGATGGTGCTGAACTCTA+TGG | 0.504782 | 5.1:+33521555 | MS.gene92929:CDS |
| TGTGATCAAAGATGATCCTA+TGG | 0.507986 | 5.1:+33523651 | MS.gene92929:CDS |
| CACATCTTTGATGTCTCCGA+AGG | 0.524661 | 5.1:-33521439 | None:intergenic |
| TTCTGCGTTGCTTGGTCAAG+CGG | 0.538224 | 5.1:-33521468 | None:intergenic |
| CAACAATGGCGATGATGCAA+GGG | 0.542406 | 5.1:+33521340 | None:intergenic |
| TTAAGGGTGGTGAACAAGGA+TGG | 0.543887 | 5.1:+33521616 | MS.gene92929:CDS |
| GGAAGATGCTTCCGCCGCCA+TGG | 0.549924 | 5.1:+33521527 | MS.gene92929:CDS |
| GCAACAATGGCGATGATGCA+AGG | 0.550286 | 5.1:+33521339 | None:intergenic |
| TCTGCTTCAGCCCTTGCCAT+AGG | 0.559803 | 5.1:-33523667 | None:intergenic |
| ATCCATATTATCCATGGCGG+CGG | 0.566198 | 5.1:-33521538 | None:intergenic |
| TAAGGGTGGTGAACAAGGAT+GGG | 0.577061 | 5.1:+33521617 | MS.gene92929:CDS |
| AGCACCATCCATATTATCCA+TGG | 0.577845 | 5.1:-33521544 | None:intergenic |
| AGGGTATGAACGCCGCGTGA+AGG | 0.578411 | 5.1:-33521419 | None:intergenic |
| GGAAGCAAGTAGCCGAAGAG+CGG | 0.585397 | 5.1:+33523608 | MS.gene92929:CDS |
| CAAGTAGCCGAAGAGCGGGA+AGG | 0.590737 | 5.1:+33523613 | MS.gene92929:CDS |
| CAAAGATGATCCTATGGCAA+GGG | 0.598055 | 5.1:+33523657 | MS.gene92929:CDS |
| GCCGCCATGGATAATATGGA+TGG | 0.598509 | 5.1:+33521540 | MS.gene92929:CDS |
| TGGCTGCTGAAGAACTGCAC+AGG | 0.598798 | 5.1:+33523587 | MS.gene92929:CDS |
| TGAACGACAGCAACAAGAAG+AGG | 0.599680 | 5.1:+33523525 | MS.gene92929:CDS |
| TATGGCAAGGGCTGAAGCAG+AGG | 0.602950 | 5.1:+33523669 | MS.gene92929:CDS |
| TCAAAGATGATCCTATGGCA+AGG | 0.621766 | 5.1:+33523656 | MS.gene92929:CDS |
| ACATCTTTGATGTCTCCGAA+GGG | 0.644563 | 5.1:-33521438 | None:intergenic |
| AACAATGGCGATGATGCAAG+GGG | 0.670281 | 5.1:+33521341 | None:intergenic |
| CTTCCTGAAAAGATTAAGGG+TGG | 0.673751 | 5.1:+33521603 | MS.gene92929:CDS |
| AAGAACACTCTCTACGTCGG+TGG | 0.677653 | 5.1:+33521369 | MS.gene92929:CDS |
| ACCATCCATATTATCCATGG+CGG | 0.687486 | 5.1:-33521541 | None:intergenic |
| CAAAAGAACACTCTCTACGT+CGG | 0.696745 | 5.1:+33521366 | MS.gene92929:CDS |
| GAACGAATCAATCCTTCACG+CGG | 0.736030 | 5.1:+33521407 | MS.gene92929:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAATTTTGAAATTTTTTT+TGG | + | chr5.1:33522053-33522072 | MS.gene92929:intron | 10.0% |
| !!! | ATTAAGTTGAAAAATTAATT+AGG | - | chr5.1:33522654-33522673 | None:intergenic | 10.0% |
| !!! | CATAAATACTTTATTTTTTT+TGG | + | chr5.1:33522747-33522766 | MS.gene92929:intron | 10.0% |
| !! | TTTATTTGGTTAAATTGATT+CGG | + | chr5.1:33522542-33522561 | MS.gene92929:intron | 15.0% |
| !!! | AAACTTAGATTTATTTCTTT+AGG | - | chr5.1:33522125-33522144 | None:intergenic | 15.0% |
| !!! | AAATACTTTATTTTTTTTGG+TGG | + | chr5.1:33522750-33522769 | MS.gene92929:intron | 15.0% |
| !!! | AAATTGAGTTTGAAATAAAT+AGG | + | chr5.1:33522568-33522587 | MS.gene92929:intron | 15.0% |
| !!! | ATATTAGTAGTTATTTTGTT+AGG | + | chr5.1:33522392-33522411 | MS.gene92929:intron | 15.0% |
| !!! | GAAAGTGAAAAATTATTTTA+AGG | + | chr5.1:33522866-33522885 | MS.gene92929:intron | 15.0% |
| !! | AAGAAAGTTAAAGATTTACT+TGG | - | chr5.1:33521651-33521670 | None:intergenic | 20.0% |
| !! | ATAATTTGAACAAAATGTGA+TGG | + | chr5.1:33521932-33521951 | MS.gene92929:intron | 20.0% |
| !! | ATCATTATTATGGGATAAAA+GGG | + | chr5.1:33521778-33521797 | MS.gene92929:intron | 20.0% |
| !! | ATTTCTTAAGCTATATATGA+AGG | + | chr5.1:33523399-33523418 | MS.gene92929:intron | 20.0% |
| !! | GAACAATAATTGTCAAATAT+CGG | + | chr5.1:33522167-33522186 | MS.gene92929:intron | 20.0% |
| !! | TATCATTATTATGGGATAAA+AGG | + | chr5.1:33521777-33521796 | MS.gene92929:intron | 20.0% |
| !! | TTACTGAACTTAAACATATT+TGG | + | chr5.1:33521843-33521862 | MS.gene92929:intron | 20.0% |
| !! | TTTGTAGGTATCATTATTAT+GGG | + | chr5.1:33521769-33521788 | MS.gene92929:intron | 20.0% |
| !!! | AAAAAATTACAAGTTTTACC+TGG | + | chr5.1:33523356-33523375 | MS.gene92929:intron | 20.0% |
| !!! | ATCAGTTTTAATCCTTTTAA+AGG | + | chr5.1:33523208-33523227 | MS.gene92929:intron | 20.0% |
| !!! | TGAAATTTTTTTTGGATTTG+AGG | + | chr5.1:33522061-33522080 | MS.gene92929:intron | 20.0% |
| !!! | TTTGTTTCAATTTTCAGTTT+GGG | + | chr5.1:33523483-33523502 | MS.gene92929:intron | 20.0% |
| !!! | TTTTGTTGTGTTTATGTTTA+GGG | + | chr5.1:33521697-33521716 | MS.gene92929:intron | 20.0% |
| ! | AAAAACAAGTTCGTTATTAG+GGG | + | chr5.1:33522295-33522314 | MS.gene92929:intron | 25.0% |
| ! | AAATTTGTCACGAAAAAAGA+AGG | - | chr5.1:33522041-33522060 | None:intergenic | 25.0% |
| ! | ACAACATTATTGCATATTGA+AGG | + | chr5.1:33522970-33522989 | MS.gene92929:intron | 25.0% |
| ! | ACTGAAAATTGAAACAAACT+TGG | - | chr5.1:33523481-33523500 | None:intergenic | 25.0% |
| ! | AGACTTTCATATAACTCATA+TGG | + | chr5.1:33522454-33522473 | MS.gene92929:intron | 25.0% |
| ! | ATATGCAATAATGTTGTCTA+AGG | - | chr5.1:33522967-33522986 | None:intergenic | 25.0% |
| ! | ATGAGTTATATGAAAGTCTA+AGG | - | chr5.1:33522453-33522472 | None:intergenic | 25.0% |
| ! | CAAAAACAAGTTCGTTATTA+GGG | + | chr5.1:33522294-33522313 | MS.gene92929:intron | 25.0% |
| ! | GTTTGTAGGTATCATTATTA+TGG | + | chr5.1:33521768-33521787 | MS.gene92929:intron | 25.0% |
| ! | TAAAATGATCTCAACTTTCT+TGG | + | chr5.1:33523429-33523448 | MS.gene92929:intron | 25.0% |
| ! | TAATTATCCATCATGAATGA+TGG | - | chr5.1:33523054-33523073 | None:intergenic | 25.0% |
| ! | TCAAAAACAAGTTCGTTATT+AGG | + | chr5.1:33522293-33522312 | MS.gene92929:intron | 25.0% |
| ! | TTCTAAATAGCGTATTACAA+AGG | - | chr5.1:33522150-33522169 | None:intergenic | 25.0% |
| !! | GAGTTTGAAATAAATAGGTT+TGG | + | chr5.1:33522573-33522592 | MS.gene92929:intron | 25.0% |
| !! | GTTTGTTTCAATTTTCAGTT+TGG | + | chr5.1:33523482-33523501 | MS.gene92929:intron | 25.0% |
| !! | TAATATGTGTCTTTAGTTCA+GGG | + | chr5.1:33522338-33522357 | MS.gene92929:intron | 25.0% |
| !! | TTTTTATACGAGAAAAACCA+AGG | + | chr5.1:33522684-33522703 | MS.gene92929:intron | 25.0% |
| !!! | AAAAAGCATTTAACATAACC+AGG | - | chr5.1:33523151-33523170 | None:intergenic | 25.0% |
| !!! | AGGATTGAATTAGGTTTTAT+GGG | + | chr5.1:33521724-33521743 | MS.gene92929:intron | 25.0% |
| !!! | ATTGGTTCTATTTAGTTTGT+AGG | + | chr5.1:33521754-33521773 | MS.gene92929:intron | 25.0% |
| !!! | CTTGATGATTTTATGTTGAA+TGG | + | chr5.1:33521801-33521820 | MS.gene92929:intron | 25.0% |
| !!! | GTTCAATTTTTTCACTTATG+TGG | + | chr5.1:33523451-33523470 | MS.gene92929:intron | 25.0% |
| !!! | GTTTTGTTGTGTTTATGTTT+AGG | + | chr5.1:33521696-33521715 | MS.gene92929:intron | 25.0% |
| !!! | TACTTTATTTTTTTTGGTGG+TGG | + | chr5.1:33522753-33522772 | MS.gene92929:intron | 25.0% |
| !!! | TGAAACTGTTTTTCTTTTAC+AGG | + | chr5.1:33522366-33522385 | MS.gene92929:intron | 25.0% |
| AATTATTCAACTCCATACCT+TGG | - | chr5.1:33522704-33522723 | None:intergenic | 30.0% | |
| AGGACAAAACTTAGATCAAT+AGG | + | chr5.1:33521964-33521983 | MS.gene92929:intron | 30.0% | |
| ATCAGTATCACTCCTTTAAA+AGG | - | chr5.1:33523223-33523242 | None:intergenic | 30.0% | |
| CATCATGAACTATATCATAC+AGG | - | chr5.1:33523086-33523105 | None:intergenic | 30.0% | |
| GACAATGCATAATATATGCA+AGG | - | chr5.1:33522799-33522818 | None:intergenic | 30.0% | |
| TTAAGAAGCAACCAAAACAT+CGG | - | chr5.1:33523301-33523320 | None:intergenic | 30.0% | |
| TTTACTCTCAAAGCAAGTAT+GGG | + | chr5.1:33522615-33522634 | MS.gene92929:intron | 30.0% | |
| ! | GAGGATTGAATTAGGTTTTA+TGG | + | chr5.1:33521723-33521742 | MS.gene92929:intron | 30.0% |
| ! | GTAATATGTGTCTTTAGTTC+AGG | + | chr5.1:33522337-33522356 | MS.gene92929:intron | 30.0% |
| ! | TTTTACTCTCAAAGCAAGTA+TGG | + | chr5.1:33522614-33522633 | MS.gene92929:intron | 30.0% |
| !! | AAATGTGATGGTTTTGCAAT+AGG | + | chr5.1:33521944-33521963 | MS.gene92929:intron | 30.0% |
| !! | TCTTTGTTTATCCGATGTTT+TGG | + | chr5.1:33523287-33523306 | MS.gene92929:intron | 30.0% |
| !!! | TTATTTTTTTTGGTGGTGGT+CGG | + | chr5.1:33522757-33522776 | MS.gene92929:intron | 30.0% |
| AAACCATTGGGCTATTCATT+TGG | + | chr5.1:33522488-33522507 | MS.gene92929:intron | 35.0% | |
| AATAGCCCAATGGTTTATGT+TGG | - | chr5.1:33522484-33522503 | None:intergenic | 35.0% | |
| ACCATATTGAAAAGCAGCTA+AGG | - | chr5.1:33521997-33522016 | None:intergenic | 35.0% | |
| AGAGAAATGTTAGTAGCTAC+TGG | + | chr5.1:33522420-33522439 | MS.gene92929:intron | 35.0% | |
| ATACGAGAAAAACCAAGGTA+TGG | + | chr5.1:33522689-33522708 | MS.gene92929:intron | 35.0% | |
| ATAGCCCAATGGTTTATGTT+GGG | - | chr5.1:33522483-33522502 | None:intergenic | 35.0% | |
| ATGTATCTGCACAATTATGC+TGG | + | chr5.1:33523103-33523122 | MS.gene92929:intron | 35.0% | |
| GAACTATATCATACAGGCAA+TGG | - | chr5.1:33523080-33523099 | None:intergenic | 35.0% | |
| GAGAAATGTTAGTAGCTACT+GGG | + | chr5.1:33522421-33522440 | MS.gene92929:intron | 35.0% | |
| GCACTTCCTGAAAAGATTAA+GGG | + | chr5.1:33521600-33521619 | MS.gene92929:CDS | 35.0% | |
| TAAGGCATAGTCAATTCTGA+AGG | + | chr5.1:33522884-33522903 | MS.gene92929:intron | 35.0% | |
| TAGGGTTTGAGGATTGAATT+AGG | + | chr5.1:33521715-33521734 | MS.gene92929:intron | 35.0% | |
| TGCACTTCCTGAAAAGATTA+AGG | + | chr5.1:33521599-33521618 | MS.gene92929:CDS | 35.0% | |
| TGCATAATATATGCAAGGTC+CGG | - | chr5.1:33522794-33522813 | None:intergenic | 35.0% | |
| TGTATCTGCACAATTATGCT+GGG | + | chr5.1:33523104-33523123 | MS.gene92929:intron | 35.0% | |
| TGTGATCAAAGATGATCCTA+TGG | + | chr5.1:33523651-33523670 | MS.gene92929:CDS | 35.0% | |
| TTACTCTCAAAGCAAGTATG+GGG | + | chr5.1:33522616-33522635 | MS.gene92929:intron | 35.0% | |
| TTGCTATCTTCGATTGACAA+TGG | + | chr5.1:33522232-33522251 | MS.gene92929:intron | 35.0% | |
| TTTCCAAATGAATAGCCCAA+TGG | - | chr5.1:33522494-33522513 | None:intergenic | 35.0% | |
| TTTGGATTTGAGGAAGTCAT+GGG | + | chr5.1:33522071-33522090 | MS.gene92929:intron | 35.0% | |
| ! | ATACTGATGAAAGAGCATGA+TGG | + | chr5.1:33523235-33523254 | MS.gene92929:intron | 35.0% |
| ! | GTGTTTATGTTTAGGGTTTG+AGG | + | chr5.1:33521704-33521723 | MS.gene92929:intron | 35.0% |
| ! | GTTTCAATTTTCAGTTTGGG+CGG | + | chr5.1:33523486-33523505 | MS.gene92929:intron | 35.0% |
| ! | TTTTGGATTTGAGGAAGTCA+TGG | + | chr5.1:33522070-33522089 | MS.gene92929:intron | 35.0% |
| !! | GAATTAGGTTTTATGGGTAG+AGG | + | chr5.1:33521730-33521749 | MS.gene92929:intron | 35.0% |
| !! | GAATTTTTCAAATCTCAGCC+AGG | - | chr5.1:33523377-33523396 | None:intergenic | 35.0% |
| !!! | TATTTTTTTTGGTGGTGGTC+GGG | + | chr5.1:33522758-33522777 | MS.gene92929:intron | 35.0% |
| !!! | TCCTTAGCTGCTTTTCAATA+TGG | + | chr5.1:33521993-33522012 | MS.gene92929:intron | 35.0% |
| AAGATTAAGGGTGGTGAACA+AGG | + | chr5.1:33521612-33521631 | MS.gene92929:CDS | 40.0% | |
| ACATCTTTGATGTCTCCGAA+GGG | - | chr5.1:33521441-33521460 | None:intergenic | 40.0% | |
| ACCATCCATATTATCCATGG+CGG | - | chr5.1:33521544-33521563 | None:intergenic | 40.0% | |
| AGAGAATAAAGCTGCAATGC+TGG | + | chr5.1:33523567-33523586 | MS.gene92929:CDS | 40.0% | |
| AGCACCATCCATATTATCCA+TGG | - | chr5.1:33521547-33521566 | None:intergenic | 40.0% | |
| CAAAAGAACACTCTCTACGT+CGG | + | chr5.1:33521366-33521385 | MS.gene92929:CDS | 40.0% | |
| CAAAGATGATCCTATGGCAA+GGG | + | chr5.1:33523657-33523676 | MS.gene92929:CDS | 40.0% | |
| CATAATATATGCAAGGTCCG+GGG | - | chr5.1:33522792-33522811 | None:intergenic | 40.0% | |
| CTATCTTCGATTGACAATGG+TGG | + | chr5.1:33522235-33522254 | MS.gene92929:intron | 40.0% | |
| CTTCCTGAAAAGATTAAGGG+TGG | + | chr5.1:33521603-33521622 | MS.gene92929:CDS | 40.0% | |
| CTTCGTGACTTTCCTTGAAA+GGG | + | chr5.1:33521506-33521525 | MS.gene92929:CDS | 40.0% | |
| GCATAATATATGCAAGGTCC+GGG | - | chr5.1:33522793-33522812 | None:intergenic | 40.0% | |
| GGGAATTGCTTAGAATGTAG+AGG | + | chr5.1:33522315-33522334 | MS.gene92929:intron | 40.0% | |
| GTGTCCCAACATAAACCATT+GGG | + | chr5.1:33522476-33522495 | MS.gene92929:intron | 40.0% | |
| TCAAAGATGATCCTATGGCA+AGG | + | chr5.1:33523656-33523675 | MS.gene92929:CDS | 40.0% | |
| ! | TCACCACCCTTAATCTTTTC+AGG | - | chr5.1:33521609-33521628 | None:intergenic | 40.0% |
| !!! | ATGGTGCAGAGGCATTTTAA+GGG | - | chr5.1:33523035-33523054 | None:intergenic | 40.0% |
| ATCCATATTATCCATGGCGG+CGG | - | chr5.1:33521541-33521560 | None:intergenic | 45.0% | |
| ATTATGCTGGGACACCAATG+CGG | + | chr5.1:33523116-33523135 | MS.gene92929:intron | 45.0% | |
| CACATCTTTGATGTCTCCGA+AGG | - | chr5.1:33521442-33521461 | None:intergenic | 45.0% | |
| CACATTCTGTCTCTCGACTA+TGG | - | chr5.1:33523261-33523280 | None:intergenic | 45.0% | |
| CATAGTCGAGAGACAGAATG+TGG | + | chr5.1:33523259-33523278 | MS.gene92929:intron | 45.0% | |
| CTCTGCACCATCATTCATGA+TGG | + | chr5.1:33523044-33523063 | MS.gene92929:intron | 45.0% | |
| GAACGAATCAATCCTTCACG+CGG | + | chr5.1:33521407-33521426 | MS.gene92929:CDS | 45.0% | |
| GCTTCGTGACTTTCCTTGAA+AGG | + | chr5.1:33521505-33521524 | MS.gene92929:CDS | 45.0% | |
| GGCTATATCATTGTACGTCG+CGG | + | chr5.1:33522188-33522207 | MS.gene92929:intron | 45.0% | |
| GGTGTCCCAACATAAACCAT+TGG | + | chr5.1:33522475-33522494 | MS.gene92929:intron | 45.0% | |
| TAAGGGTGGTGAACAAGGAT+GGG | + | chr5.1:33521617-33521636 | MS.gene92929:CDS | 45.0% | |
| TGAACGACAGCAACAAGAAG+AGG | + | chr5.1:33523525-33523544 | MS.gene92929:CDS | 45.0% | |
| TTAAGGGTGGTGAACAAGGA+TGG | + | chr5.1:33521616-33521635 | MS.gene92929:CDS | 45.0% | |
| ! | ATGGATGGTGCTGAACTCTA+TGG | + | chr5.1:33521555-33521574 | MS.gene92929:CDS | 45.0% |
| ! | ATTTTCAGTTTGGGCGGATG+CGG | + | chr5.1:33523492-33523511 | MS.gene92929:intron | 45.0% |
| ! | CAGAGTATCCTTCCTCTTAG+TGG | - | chr5.1:33522268-33522287 | None:intergenic | 45.0% |
| ! | CATCATGAATGATGGTGCAG+AGG | - | chr5.1:33523046-33523065 | None:intergenic | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr5.1:33522821-33522840 | None:intergenic | 45.0% |
| !! | ACGCAGAAGCATCGATCTTT+CGG | + | chr5.1:33521483-33521502 | MS.gene92929:CDS | 45.0% |
| !! | CAGCTTTATTCTCTGCTTCG+AGG | - | chr5.1:33523561-33523580 | None:intergenic | 45.0% |
| !! | GGTTTTATGGGTAGAGGCAT+TGG | + | chr5.1:33521736-33521755 | MS.gene92929:intron | 45.0% |
| !!! | GATGGTGCAGAGGCATTTTA+AGG | - | chr5.1:33523036-33523055 | None:intergenic | 45.0% |
| !!! | TTTAAATTTTAGATTTTATT+TGG | + | chr5.1:33522528-33522547 | MS.gene92929:intron | 5.0% |
| AAGAACACTCTCTACGTCGG+TGG | + | chr5.1:33521369-33521388 | MS.gene92929:CDS | 50.0% | |
| ATCGATGCTTCTGCGTTGCT+TGG | - | chr5.1:33521479-33521498 | None:intergenic | 50.0% | |
| CCAATGCGGCTTATGAATCC+TGG | + | chr5.1:33523130-33523149 | MS.gene92929:intron | 50.0% | |
| CCAGGATTCATAAGCCGCAT+TGG | - | chr5.1:33523133-33523152 | None:intergenic | 50.0% | |
| GCCGCCATGGATAATATGGA+TGG | + | chr5.1:33521540-33521559 | MS.gene92929:CDS | 50.0% | |
| GTCTCTTGCCACTAAGAGGA+AGG | + | chr5.1:33522257-33522276 | MS.gene92929:intron | 50.0% | |
| TCTCTACGTCGGTGGTTTAG+CGG | + | chr5.1:33521377-33521396 | MS.gene92929:CDS | 50.0% | |
| TTCCGCCGCCATGGATAATA+TGG | + | chr5.1:33521536-33521555 | MS.gene92929:CDS | 50.0% | |
| TTCTGCGTTGCTTGGTCAAG+CGG | - | chr5.1:33521471-33521490 | None:intergenic | 50.0% | |
| TTTCTCTCCTTCCCGCTCTT+CGG | - | chr5.1:33523623-33523642 | None:intergenic | 50.0% | |
| !! | CGGAAGCATCTTCCCTTTCA+AGG | - | chr5.1:33521521-33521540 | None:intergenic | 50.0% |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr5.1:33522823-33522842 | MS.gene92929:intron | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr5.1:33522826-33522845 | None:intergenic | 55.0% | |
| GAAGCAAGTAGCCGAAGAGC+GGG | + | chr5.1:33523609-33523628 | MS.gene92929:CDS | 55.0% | |
| GGAAGCAAGTAGCCGAAGAG+CGG | + | chr5.1:33523608-33523627 | MS.gene92929:CDS | 55.0% | |
| GGTGGTCTCTTGCCACTAAG+AGG | + | chr5.1:33522253-33522272 | MS.gene92929:intron | 55.0% | |
| TATGGCAAGGGCTGAAGCAG+AGG | + | chr5.1:33523669-33523688 | MS.gene92929:CDS | 55.0% | |
| TCTGCTTCAGCCCTTGCCAT+AGG | - | chr5.1:33523670-33523689 | None:intergenic | 55.0% | |
| TGGCTGCTGAAGAACTGCAC+AGG | + | chr5.1:33523587-33523606 | MS.gene92929:CDS | 55.0% | |
| TTTGGGCGGATGCGGATACT+TGG | + | chr5.1:33523500-33523519 | MS.gene92929:CDS | 55.0% | |
| AGGGTATGAACGCCGCGTGA+AGG | - | chr5.1:33521422-33521441 | None:intergenic | 60.0% | |
| CAAGTAGCCGAAGAGCGGGA+AGG | + | chr5.1:33523613-33523632 | MS.gene92929:CDS | 60.0% | |
| CACGCGGCGTTCATACCCTT+CGG | + | chr5.1:33521423-33521442 | MS.gene92929:CDS | 60.0% | |
| CGTCGGTGGTTTAGCGGAAG+AGG | + | chr5.1:33521383-33521402 | MS.gene92929:CDS | 60.0% | |
| GGAAGATGCTTCCGCCGCCA+TGG | + | chr5.1:33521527-33521546 | MS.gene92929:CDS | 65.0% | |
| GTGGTCGGGAACTCGAACCC+CGG | + | chr5.1:33522772-33522791 | MS.gene92929:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 33521345 | 33523705 | 33521345 | ID=MS.gene92929 |
| chr5.1 | mRNA | 33521345 | 33523705 | 33521345 | ID=MS.gene92929.t1;Parent=MS.gene92929 |
| chr5.1 | exon | 33521345 | 33521651 | 33521345 | ID=MS.gene92929.t1.exon1;Parent=MS.gene92929.t1 |
| chr5.1 | CDS | 33521345 | 33521651 | 33521345 | ID=cds.MS.gene92929.t1;Parent=MS.gene92929.t1 |
| chr5.1 | exon | 33523500 | 33523705 | 33523500 | ID=MS.gene92929.t1.exon2;Parent=MS.gene92929.t1 |
| chr5.1 | CDS | 33523500 | 33523705 | 33523500 | ID=cds.MS.gene92929.t1;Parent=MS.gene92929.t1 |
| Gene Sequence |
| Protein sequence |
