AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93340.t1 MTR_1g051315 83.364 1070 124 8 24 1088 17 1037 0.0 1782
MS.gene93340.t1 MTR_1g075370 74.038 1040 204 17 70 1084 1 999 0.0 1469
MS.gene93340.t1 MTR_3g031040 56.223 1149 382 26 24 1083 44 1160 0.0 1134
MS.gene93340.t1 MTR_0756s0010 84.727 622 72 8 151 758 383 995 0.0 1053
MS.gene93340.t1 MTR_0756s0010 73.892 203 33 3 888 1088 1 185 1.02e-79 282
MS.gene93340.t1 MTR_3g085840 51.849 1136 398 25 24 1083 28 1090 0.0 1006
MS.gene93340.t1 MTR_8g447140 83.824 68 11 0 24 91 15 82 4.63e-33 123
MS.gene93340.t1 MTR_7g089790 24.731 279 178 7 248 497 356 631 1.04e-17 89.0
MS.gene93340.t1 MTR_6g029520 39.326 89 41 3 442 529 15 91 4.61e-12 63.9
MS.gene93340.t1 MTR_6g029500 32.857 140 63 6 359 495 8 119 6.87e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93340.t1 AT3G23890 46.905 1147 491 26 24 1083 56 1171 0.0 892
MS.gene93340.t1 AT3G23890 46.905 1147 491 26 24 1083 56 1171 0.0 889
MS.gene93340.t1 AT3G10270 24.643 280 179 7 248 498 360 636 1.20e-14 79.3
MS.gene93340.t1 AT3G10270 24.643 280 179 7 248 498 370 646 1.48e-14 79.0
MS.gene93340.t1 AT5G04130 24.911 281 179 7 248 499 362 639 2.50e-14 78.2

Find 221 sgRNAs with CRISPR-Local

Find 410 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTCACATGGATGATATT+TGG 0.103128 1.3:-33209395 None:intergenic
TAACTCCATTGCTACAATTA+AGG 0.175191 1.3:+33206054 MS.gene93340:CDS
GCCCTTGGCACTTTCCTTAA+TGG 0.181149 1.3:-33209494 None:intergenic
CTCATACCTTATGGTCAATT+TGG 0.190405 1.3:+33208946 MS.gene93340:CDS
TTTGGTCAAATTCATCTTAA+AGG 0.198788 1.3:-33208794 None:intergenic
CTTGGTTAAGTCAGGCTTAA+AGG 0.212093 1.3:-33205573 None:intergenic
CAGATTCTGATGACCGTTCT+TGG 0.213082 1.3:+33206833 MS.gene93340:CDS
CAGTCACATAAGCAGTTAAT+AGG 0.234489 1.3:-33208831 None:intergenic
AGTATTGCTAGGACAATTAT+TGG 0.234507 1.3:+33208883 MS.gene93340:CDS
TAAACTTCATTTATTCATTC+TGG 0.236113 1.3:+33207099 MS.gene93340:CDS
TTAGCTTAATGTATAACTTT+TGG 0.238732 1.3:-33209095 None:intergenic
ATTCCTCTCGTGCTTGTTAA+TGG 0.262770 1.3:+33209334 MS.gene93340:CDS
ATACATGCTAACCTTTATAA+TGG 0.264605 1.3:-33207168 None:intergenic
ATTTCACATGGATGATATTT+GGG 0.289353 1.3:-33209394 None:intergenic
CTCCAAGCTATCACTTAGTT+TGG 0.291086 1.3:-33205889 None:intergenic
GAAGATGGCGCTCACTTAAA+AGG 0.298478 1.3:+33207068 MS.gene93340:CDS
TTTAGTGGTTAACATCTCTT+TGG 0.298672 1.3:-33206239 None:intergenic
TATGTTTCATCGCCTATTAA+TGG 0.301163 1.3:-33205083 None:intergenic
AAGAAGGGTATACTTTGTTC+TGG 0.306802 1.3:-33209963 None:intergenic
CCAAAGGTCCATTCCGTCTA+TGG 0.315407 1.3:+33208729 MS.gene93340:CDS
AAACCCTCCTACCACGGATA+TGG 0.316772 1.3:+33206410 MS.gene93340:CDS
GTTTACCATTCCCATTATAA+AGG 0.320688 1.3:+33207157 MS.gene93340:CDS
GAAGGAGTTCCGTAATAATA+TGG 0.331104 1.3:+33205490 MS.gene93340:intron
ATCAATCTTCTCATACCTTA+TGG 0.335295 1.3:+33208937 MS.gene93340:CDS
TAGGGAAACTTCTGTTTGTT+TGG 0.342344 1.3:-33208812 None:intergenic
CAATACTTCCTTCTTTATAT+AGG 0.346444 1.3:-33206116 None:intergenic
CCTCTGTACCATGGTTTCAT+TGG 0.349890 1.3:-33209460 None:intergenic
CTAGATTGGGTTTAAATTCA+AGG 0.350360 1.3:+33206266 MS.gene93340:CDS
GGTTGAGTTTGCTGATGAAC+TGG 0.353741 1.3:+33205160 MS.gene93340:CDS
TTCTACTCTCAACCGGTTCA+TGG 0.356994 1.3:-33205015 None:intergenic
AACTCCATTGCTACAATTAA+GGG 0.357057 1.3:+33206055 MS.gene93340:CDS
GAACATTCTTATTGTCACTA+TGG 0.359364 1.3:+33208853 MS.gene93340:CDS
AACCACTAAACCAGCTAGAT+TGG 0.360006 1.3:+33206252 MS.gene93340:CDS
CAGCTTCACAAGGCTTTCCT+TGG 0.365310 1.3:-33210481 None:intergenic
TACAACGGTGCTCCATTAAT+AGG 0.371112 1.3:+33205071 MS.gene93340:CDS
ATATGGCCGGTTGATGATTA+TGG 0.375514 1.3:+33206898 MS.gene93340:CDS
CGATCTCATGTTGTTTGAAA+AGG 0.376087 1.3:+33210572 MS.gene93340:CDS
AAAATACCAGTTTGGTTCAA+TGG 0.378162 1.3:-33209190 None:intergenic
ACTTAACATCCATATTATTA+CGG 0.387230 1.3:-33205499 None:intergenic
TACATGCTAACCTTTATAAT+GGG 0.389206 1.3:-33207167 None:intergenic
GCAAATAGGGGTTTATGAAA+TGG 0.395072 1.3:+33209737 MS.gene93340:CDS
TGGGTAAAACTGCAAATGAT+TGG 0.395453 1.3:+33207367 MS.gene93340:CDS
ACCCAATCTAGCTGGTTTAG+TGG 0.398255 1.3:-33206254 None:intergenic
GGAGAAACAAAATACCAGTT+TGG 0.399143 1.3:-33209198 None:intergenic
CCTTGGCAGGGAAAAGGGTT+TGG 0.399834 1.3:-33205759 None:intergenic
TCTTGAGTCCACTTTCGAAT+AGG 0.401645 1.3:-33209577 None:intergenic
CTGGACATGGCAGGGTGCCT+TGG 0.404628 1.3:+33205650 MS.gene93340:CDS
GTATTCATCAACTTTGCGTT+TGG 0.412516 1.3:-33205537 None:intergenic
CAAGGAAAGCCTTGTGAAGC+TGG 0.412762 1.3:+33210482 MS.gene93340:CDS
CTTTAAGTTACTCGCCTGAT+TGG 0.413824 1.3:-33206921 None:intergenic
AACAAACCTTGGCAGGGAAA+AGG 0.414415 1.3:-33205765 None:intergenic
ATTTCAAACTTGGTTAAGTC+AGG 0.419992 1.3:-33205581 None:intergenic
GTTGATGATTATGGCCAATC+AGG 0.420811 1.3:+33206907 MS.gene93340:CDS
TCTGCAGAACCACAAGTTGC+AGG 0.422272 1.3:+33210354 MS.gene93340:CDS
GGCTTGGATTTGTAACTCTC+AGG 0.424276 1.3:+33208527 MS.gene93340:CDS
TTTCTTCTTGAATTGTGCTC+AGG 0.428203 1.3:+33205733 MS.gene93340:CDS
TTGAGCAATTTGCTGCTCAA+TGG 0.434370 1.3:-33206770 None:intergenic
TCTTCCTTTGACCAAGTGTA+AGG 0.436040 1.3:-33208759 None:intergenic
TCCATTCCGTCTATGGTAGA+TGG 0.437461 1.3:+33208736 MS.gene93340:CDS
TATCAATTTCTACTCTCAAC+CGG 0.438637 1.3:-33205022 None:intergenic
AAGACAGGTCATTTCAAACT+TGG 0.440459 1.3:-33205591 None:intergenic
ACAAACCTTGGCAGGGAAAA+GGG 0.441751 1.3:-33205764 None:intergenic
GGCAGGGTGCCTTGGTGTTA+CGG 0.442995 1.3:+33205658 MS.gene93340:CDS
GGAAGCTGAACTTGATGAAA+AGG 0.443098 1.3:+33210503 MS.gene93340:CDS
TTGATTGAGATTCTGAAGAA+AGG 0.443991 1.3:+33210327 MS.gene93340:CDS
GATGCAGAATCTTTGAGATA+TGG 0.445406 1.3:+33206881 MS.gene93340:CDS
CTTGAATACTTGAATGAGGA+TGG 0.448433 1.3:+33209162 MS.gene93340:CDS
AGAAGGGTATACTTTGTTCT+GGG 0.449255 1.3:-33209962 None:intergenic
ACCACTAAACCAGCTAGATT+GGG 0.455351 1.3:+33206253 MS.gene93340:CDS
ATTCAGCTCTTCGGTAGATC+GGG 0.457510 1.3:-33210302 None:intergenic
CCATAGACGGAATGGACCTT+TGG 0.460174 1.3:-33208729 None:intergenic
CTCTTTGGTTTGAGAATGAA+AGG 0.461055 1.3:-33206224 None:intergenic
GTGGTGGATCCAGACCTCTA+TGG 0.461161 1.3:+33206740 MS.gene93340:CDS
AATTCAGCTCTTCGGTAGAT+CGG 0.461161 1.3:-33210303 None:intergenic
GAAGGAAGTATTGAAGAAGA+AGG 0.461183 1.3:+33206126 MS.gene93340:CDS
TTTCTTGAAGGAAGAGGAAA+TGG 0.462649 1.3:+33209435 MS.gene93340:CDS
AAGCTGAGGATTGGAAGGCT+TGG 0.463509 1.3:+33208511 MS.gene93340:CDS
GGGTAAAACTGCAAATGATT+GGG 0.465618 1.3:+33207368 MS.gene93340:CDS
TTCAAGATCTTGATGAGCAC+AGG 0.467834 1.3:+33208412 MS.gene93340:CDS
CAGAAAACTGTAGCGACATT+GGG 0.469067 1.3:+33210417 MS.gene93340:CDS
TATATAGGTAGTAATTTGCT+TGG 0.471571 1.3:-33206101 None:intergenic
TAACCTTTGAAAGACTTGAA+TGG 0.472512 1.3:-33205704 None:intergenic
CACTGTGAAGAATCATTTGT+GGG 0.474415 1.3:+33206171 MS.gene93340:CDS
TATTGAATCGATGAAAGTAT+CGG 0.475335 1.3:-33204857 None:intergenic
TGAACTTGATGAAAAGGAAA+AGG 0.475499 1.3:+33210509 MS.gene93340:CDS
CTTGGGTCCGCCAGCCAACA+TGG 0.477101 1.3:-33206473 None:intergenic
GTTGTTTGAAAAGGAATTTG+AGG 0.477485 1.3:+33210581 MS.gene93340:CDS
AACTTCCACTTCAATTGAGC+TGG 0.478868 1.3:+33208476 MS.gene93340:CDS
CTTTCATAATTACAAGTGCC+AGG 0.481167 1.3:-33208643 None:intergenic
GTTAATGGTTGCCATGCCAT+GGG 0.481428 1.3:+33209349 MS.gene93340:CDS
TGTTAATGGTTGCCATGCCA+TGG 0.481656 1.3:+33209348 MS.gene93340:CDS
GTATAGCAACAAACCTTGGC+AGG 0.482980 1.3:-33205772 None:intergenic
AGTCACATAAGCAGTTAATA+GGG 0.483686 1.3:-33208830 None:intergenic
AAAGCAAAAGTATAAAGTAC+AGG 0.483777 1.3:+33208662 MS.gene93340:CDS
GACAATTATTGGAATGGCAC+AGG 0.484637 1.3:+33208894 MS.gene93340:CDS
TGCCAAACTAAGTGATAGCT+TGG 0.485065 1.3:+33205887 MS.gene93340:CDS
GGAGGTCCATTGAACCAAAC+TGG 0.485470 1.3:+33209184 MS.gene93340:CDS
GAATTTAAACCCAATCTAGC+TGG 0.486301 1.3:-33206262 None:intergenic
TTGGTTTGAGAATGAAAGGC+AGG 0.487374 1.3:-33206220 None:intergenic
GGCCGGGGACTCTGCTGTGG+TGG 0.490657 1.3:+33206724 MS.gene93340:CDS
ATTGAATCGATGAAAGTATC+GGG 0.491871 1.3:-33204856 None:intergenic
TTGGGAGATAAAGTACTGTA+AGG 0.492199 1.3:+33207386 MS.gene93340:CDS
TTTGAAACTTTAAGTAGTGA+TGG 0.496412 1.3:-33207122 None:intergenic
GATTGGCCATAATCATCAAC+CGG 0.498294 1.3:-33206904 None:intergenic
CATGTGGAAGCCATGTTGGC+TGG 0.498612 1.3:+33206463 MS.gene93340:CDS
GAATGTAAGACGTTTCTTGA+AGG 0.500170 1.3:+33209423 MS.gene93340:CDS
GGCGAGATCCAACCATGAAC+CGG 0.500768 1.3:+33205003 MS.gene93340:CDS
CTATGCAGCAATATGAAGAC+TGG 0.501085 1.3:+33207334 MS.gene93340:CDS
ATCTCCATGTGTCAAAATCA+AGG 0.504011 1.3:-33206509 None:intergenic
GGATGTTAAGTTTGAGCGAA+TGG 0.507160 1.3:+33205511 MS.gene93340:CDS
ACTCTCAACCGGTTCATGGT+TGG 0.511692 1.3:-33205011 None:intergenic
TTGAAGAGTTCTGTAGACTT+CGG 0.512526 1.3:+33210067 MS.gene93340:CDS
GCAGAAAACTGTAGCGACAT+TGG 0.512848 1.3:+33210416 MS.gene93340:CDS
CTATACAGTCAATGGTTTAG+TGG 0.515308 1.3:+33209516 MS.gene93340:CDS
GTTGAGTTTGCTGATGAACT+GGG 0.515629 1.3:+33205161 MS.gene93340:CDS
TATCATCATCCGCAGGGAAG+AGG 0.516111 1.3:-33209134 None:intergenic
AAGTGACGGGAAGTTTCAAC+AGG 0.516729 1.3:+33205926 MS.gene93340:CDS
GCAGGCTTCTAATTCAAAGA+AGG 0.516971 1.3:+33207290 MS.gene93340:intron
GCCAAGGGCTATACAGTCAA+TGG 0.517329 1.3:+33209508 MS.gene93340:CDS
TGAAATGACCTGTCTTGAAA+AGG 0.518391 1.3:+33205598 MS.gene93340:CDS
TCGTTTAACCACATTGACTC+TGG 0.519401 1.3:-33210552 None:intergenic
AAAGGAAAAGGAGACTTTGA+AGG 0.520986 1.3:+33210521 MS.gene93340:CDS
GCTTCTTGAATACTTGAATG+AGG 0.522976 1.3:+33209158 MS.gene93340:CDS
ATTCCATTCAAGTCTTTCAA+AGG 0.523540 1.3:+33205701 MS.gene93340:CDS
TGCTAGGACAATTATTGGAA+TGG 0.524573 1.3:+33208888 MS.gene93340:CDS
AAGATAAAGAAGAATTATGC+AGG 0.524744 1.3:+33209859 MS.gene93340:CDS
ATCCACCACAGCAGAGTCCC+CGG 0.525916 1.3:-33206726 None:intergenic
AAGACGTTTCTTGAAGGAAG+AGG 0.526599 1.3:+33209429 MS.gene93340:CDS
CCGTTTCTCCATGGTGGTGG+TGG 0.527006 1.3:-33204827 None:intergenic
CCACCACCACCATGGAGAAA+CGG 0.528508 1.3:+33204827 MS.gene93340:CDS
CGAGTGCCAAATTGACCATA+AGG 0.529069 1.3:-33208952 None:intergenic
AAGAGCTTCCTATTCGAAAG+TGG 0.529906 1.3:+33209569 MS.gene93340:CDS
GGAAACACACCATAGAGGTC+TGG 0.531863 1.3:-33206749 None:intergenic
TGATTACAGTTCAAAAGAGC+AGG 0.534914 1.3:+33210383 MS.gene93340:CDS
CCCACCCTTAATTGTAGCAA+TGG 0.534995 1.3:-33206059 None:intergenic
GGGTTCGCACCGTTTCTCCA+TGG 0.538243 1.3:-33204836 None:intergenic
GCACCGTTTCTCCATGGTGG+TGG 0.541303 1.3:-33204830 None:intergenic
AGGGTTCAGAGGAACCATTA+AGG 0.541657 1.3:+33209480 MS.gene93340:CDS
TTGTGCTAATAGTGCACGAC+AGG 0.543087 1.3:-33209890 None:intergenic
ACAAGCACGAGAGGAATGAT+TGG 0.543192 1.3:-33209328 None:intergenic
GAGATTTCTGTTTGCTACAA+CGG 0.544216 1.3:+33205056 MS.gene93340:CDS
ACCATTGACTGTATAGCCCT+TGG 0.545026 1.3:-33209509 None:intergenic
GCTAACCTTTATAATGGGAA+TGG 0.549394 1.3:-33207162 None:intergenic
AATTACTACCTATATAAAGA+AGG 0.550935 1.3:+33206108 MS.gene93340:CDS
ACAGGGCTTGACTGCTGCGC+AGG 0.551294 1.3:+33208374 MS.gene93340:intron
CATTATCAGATGATGCAGCC+TGG 0.552645 1.3:+33208625 MS.gene93340:intron
AGAAGCTTATCATCATCCGC+AGG 0.557217 1.3:-33209141 None:intergenic
TTGAATACTTGAATGAGGAT+GGG 0.558328 1.3:+33209163 MS.gene93340:CDS
GAATGCCAGCTCAATTGAAG+TGG 0.559058 1.3:-33208481 None:intergenic
CCTCTGAACCCTCTGTACCA+TGG 0.559837 1.3:-33209469 None:intergenic
TCATTTGCACCTGCAACTTG+TGG 0.561302 1.3:-33210363 None:intergenic
GAAGTATTATGCGAAGAGAA+AGG 0.562096 1.3:+33210092 MS.gene93340:CDS
AAACAATGGGTTTACGAAGA+CGG 0.562526 1.3:+33204894 MS.gene93340:CDS
CAGGCTTCTAATTCAAAGAA+GGG 0.563679 1.3:+33207291 MS.gene93340:intron
CAGAATCTTTGAGATATGGC+CGG 0.565635 1.3:+33206885 MS.gene93340:CDS
AACTGCTCAGGCGCACATTG+AGG 0.565662 1.3:+33209624 MS.gene93340:CDS
GATGGCCGGGGACTCTGCTG+TGG 0.566327 1.3:+33206721 MS.gene93340:intron
ATGGTAGATGGCCTTACACT+TGG 0.567342 1.3:+33208748 MS.gene93340:CDS
GTTCAGCTTCCAGCTTCACA+AGG 0.569093 1.3:-33210491 None:intergenic
TTAAATTCAAGGCTGACTCA+TGG 0.569462 1.3:+33206277 MS.gene93340:CDS
TTGCGAAAACCCTCCTACCA+CGG 0.569603 1.3:+33206404 MS.gene93340:CDS
GCCATCTACCATAGACGGAA+TGG 0.570381 1.3:-33208737 None:intergenic
TTTGCCTGAGTCTAAGTGAC+GGG 0.571160 1.3:+33205913 MS.gene93340:CDS
TCAATTTGGCACTCGTGACC+TGG 0.572606 1.3:+33208960 MS.gene93340:CDS
ATGGTGAACAAAGTATTGCT+AGG 0.572941 1.3:+33208872 MS.gene93340:CDS
TTGGCTGGCGGACCCAAGCG+TGG 0.573379 1.3:+33206478 MS.gene93340:CDS
ACTTCCCGTCACTTAGACTC+AGG 0.573380 1.3:-33205917 None:intergenic
CCATGGTACAGAGGGTTCAG+AGG 0.576601 1.3:+33209469 MS.gene93340:CDS
AAGCGTGTGCTGGACATGGC+AGG 0.576604 1.3:+33205641 MS.gene93340:CDS
AACCATTAAGGAAAGTGCCA+AGG 0.577924 1.3:+33209492 MS.gene93340:CDS
TGTGTGATTTAGGATGAAGA+TGG 0.586547 1.3:+33207053 MS.gene93340:intron
ACACTGTGAAGAATCATTTG+TGG 0.588327 1.3:+33206170 MS.gene93340:CDS
TAAAACATGTCCCCATGGCA+TGG 0.588519 1.3:-33209360 None:intergenic
TCCATTGCTACAATTAAGGG+TGG 0.590306 1.3:+33206058 MS.gene93340:CDS
GTTTCGCACAAGTCCAAGAA+CGG 0.592227 1.3:-33206846 None:intergenic
TATCCATATCCGTGGTAGGA+GGG 0.595244 1.3:-33206413 None:intergenic
AACGCATGTGGAAGCCATGT+TGG 0.600042 1.3:+33206459 MS.gene93340:CDS
ATGGCCTTACACTTGGTCAA+AGG 0.601878 1.3:+33208755 MS.gene93340:CDS
ACATTCTCAATAATTTCACA+TGG 0.607220 1.3:-33209406 None:intergenic
ACCATTAAGGAAAGTGCCAA+GGG 0.608418 1.3:+33209493 MS.gene93340:CDS
GATGATGATGATGAACAAGA+TGG 0.612754 1.3:+33208453 MS.gene93340:CDS
TAGACAACAACTTACAGCAA+AGG 0.613909 1.3:-33206536 None:intergenic
ACGTTTGAAACAAACGCATG+TGG 0.614278 1.3:+33206435 MS.gene93340:CDS
CAGCAAATTGCTCAATGTGA+GGG 0.614544 1.3:+33206778 MS.gene93340:CDS
GTAAGGCCATCTACCATAGA+CGG 0.619440 1.3:-33208742 None:intergenic
GAAGGGTATACTTTGTTCTG+GGG 0.620162 1.3:-33209961 None:intergenic
TTGAGTTTGCTGATGAACTG+GGG 0.620869 1.3:+33205162 MS.gene93340:CDS
GTATCCATATCCGTGGTAGG+AGG 0.624860 1.3:-33206414 None:intergenic
AACGCATGTGGAAACGCATG+TGG 0.625648 1.3:+33206447 MS.gene93340:CDS
CAATGAAACCATGGTACAGA+GGG 0.626920 1.3:+33209461 MS.gene93340:CDS
CGACGACACCACCACCACCA+TGG 0.627293 1.3:+33204819 MS.gene93340:CDS
TTCAAACGTATCCATATCCG+TGG 0.628528 1.3:-33206421 None:intergenic
AACGTATCCATATCCGTGGT+AGG 0.632013 1.3:-33206417 None:intergenic
TCAAGATCTTGATGAGCACA+GGG 0.632484 1.3:+33208413 MS.gene93340:CDS
AGAACTAAAACATGTCCCCA+TGG 0.633388 1.3:-33209365 None:intergenic
GCAGCAAATTGCTCAATGTG+AGG 0.635204 1.3:+33206777 MS.gene93340:CDS
GCCTCCTGAAAATTTCACCA+AGG 0.636053 1.3:+33210464 MS.gene93340:CDS
TGGTTTGAGAATGAAAGGCA+GGG 0.636069 1.3:-33206219 None:intergenic
AGCGTGTGCTGGACATGGCA+GGG 0.637743 1.3:+33205642 MS.gene93340:CDS
TTCGCACCGTTTCTCCATGG+TGG 0.637837 1.3:-33204833 None:intergenic
GTGGAAGCCATGTTGGCTGG+CGG 0.643435 1.3:+33206466 MS.gene93340:CDS
AAGCAAAAGTATAAAGTACA+GGG 0.644999 1.3:+33208663 MS.gene93340:CDS
ATTTGCCTGAGTCTAAGTGA+CGG 0.647908 1.3:+33205912 MS.gene93340:CDS
GAAGCTTATCATCATCCGCA+GGG 0.649174 1.3:-33209140 None:intergenic
TATAGCAACAAACCTTGGCA+GGG 0.650879 1.3:-33205771 None:intergenic
TCAATGGAAACACACCATAG+AGG 0.652980 1.3:-33206754 None:intergenic
AAATGGTGCCAATGAAACCA+TGG 0.654204 1.3:+33209452 MS.gene93340:CDS
TAACCACATTGACTCTGGTG+AGG 0.655041 1.3:-33210547 None:intergenic
CCATTGCTACAATTAAGGGT+GGG 0.656973 1.3:+33206059 MS.gene93340:CDS
AATACTTGAATGAGGATGGG+AGG 0.657573 1.3:+33209166 MS.gene93340:CDS
CCAATGAAACCATGGTACAG+AGG 0.662442 1.3:+33209460 MS.gene93340:CDS
CAACCATTAACAAGCACGAG+AGG 0.665375 1.3:-33209337 None:intergenic
AGGCTTCTAATTCAAAGAAG+GGG 0.666064 1.3:+33207292 MS.gene93340:intron
TGAACTGGGGACTACGAGAG+AGG 0.674710 1.3:+33205175 MS.gene93340:CDS
TACTCGTCTCCTCTTCCCTG+CGG 0.697813 1.3:+33209125 MS.gene93340:CDS
ATACCTCACCAGAGTCAATG+TGG 0.704853 1.3:+33210544 MS.gene93340:CDS
GCATGACGCATTCACAACAT+CGG 0.706357 1.3:-33210280 None:intergenic
TTAGTTCAACCGTAACACCA+AGG 0.728233 1.3:-33205667 None:intergenic
TTAATGGTTGCCATGCCATG+GGG 0.732905 1.3:+33209350 MS.gene93340:CDS
AGTTGATGAATACTCGACCA+CGG 0.738082 1.3:+33205547 MS.gene93340:CDS
GTCAGGCTTAAAGGTCACCG+TGG 0.740766 1.3:-33205564 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTCATAAATATAAAAAATA+TGG - chr1.3:33207430-33207449 None:intergenic 10.0%
!! GTTAATATATATTAATAGAT+AGG - chr1.3:33210166-33210185 None:intergenic 10.0%
!! TATGAACTAAAATTAAATTT+AGG + chr1.3:33205261-33205280 MS.gene93340:intron 10.0%
!!! AAAGTATATATTTCAAATTT+TGG + chr1.3:33206586-33206605 MS.gene93340:intron 10.0%
!!! AATAAATTGATTAGATTTTA+TGG + chr1.3:33207783-33207802 MS.gene93340:intron 10.0%
!!! ATTTTTTATTTTTTTTTACC+AGG + chr1.3:33206021-33206040 MS.gene93340:intron 10.0%
!! AAAGTAATTATACATAAAGA+AGG - chr1.3:33209982-33210001 None:intergenic 15.0%
!! AAGTAATTATACATAAAGAA+GGG - chr1.3:33209981-33210000 None:intergenic 15.0%
!! AATAATACATGAAAAGTAAA+TGG + chr1.3:33207884-33207903 MS.gene93340:intron 15.0%
!! AGAAAATTTACATATGAAAA+AGG - chr1.3:33209700-33209719 None:intergenic 15.0%
!! ATAATACATGAAAAGTAAAT+GGG + chr1.3:33207885-33207904 MS.gene93340:intron 15.0%
!! CATAAATATAAAAAATATGG+AGG - chr1.3:33207427-33207446 None:intergenic 15.0%
!! TTATTAATAAGTAACAACTA+AGG + chr1.3:33209250-33209269 MS.gene93340:intron 15.0%
!!! CGTTTTAACTTTTTTATAAT+AGG - chr1.3:33207848-33207867 None:intergenic 15.0%
!!! TTTGATTTTTGATTTTTCTA+GGG + chr1.3:33205224-33205243 MS.gene93340:intron 15.0%
!!! TTTTGATTTTTGATTTTTCT+AGG + chr1.3:33205223-33205242 MS.gene93340:intron 15.0%
!! AAAAAAAAACAGAGAAACAA+TGG + chr1.3:33204880-33204899 MS.gene93340:CDS 20.0%
!! AAAAAAAACAGAGAAACAAT+GGG + chr1.3:33204881-33204900 MS.gene93340:CDS 20.0%
!! AATTACTACCTATATAAAGA+AGG + chr1.3:33206108-33206127 MS.gene93340:CDS 20.0%
!! AATTTGAACTATTATAATCG+CGG - chr1.3:33207031-33207050 None:intergenic 20.0%
!! ACAAAAAAAAAAAGAAACGT+TGG + chr1.3:33207736-33207755 MS.gene93340:intron 20.0%
!! ACTTAACATCCATATTATTA+CGG - chr1.3:33205502-33205521 None:intergenic 20.0%
!! ATAGCAGAAATATAAAATAC+AGG - chr1.3:33205348-33205367 None:intergenic 20.0%
!! ATCAAAAATCAAAATCTCAA+AGG - chr1.3:33205217-33205236 None:intergenic 20.0%
!! ATCATGTTAGATAAAAACAA+AGG - chr1.3:33205844-33205863 None:intergenic 20.0%
!! GCAATAAAAAAAAATTATGC+CGG - chr1.3:33208995-33209014 None:intergenic 20.0%
!! TAAACTTCATTTATTCATTC+TGG + chr1.3:33207099-33207118 MS.gene93340:CDS 20.0%
!! TTCAAATTTATGTGTGATTT+AGG + chr1.3:33207043-33207062 MS.gene93340:intron 20.0%
!!! CTTTGCTTATTTCAAATTTT+TGG + chr1.3:33208344-33208363 MS.gene93340:intron 20.0%
!!! TATATGGTAAGTAAAAGTAT+AGG - chr1.3:33209658-33209677 None:intergenic 20.0%
!!! TGTTTTTATCTAACATGATT+TGG + chr1.3:33205845-33205864 MS.gene93340:intron 20.0%
! AAAAATACAACCAAGACAAA+TGG - chr1.3:33205463-33205482 None:intergenic 25.0%
! AAAATAGCCATTACAAAGAA+AGG - chr1.3:33209222-33209241 None:intergenic 25.0%
! AAAGACTGAATGAAAGAATT+AGG - chr1.3:33208328-33208347 None:intergenic 25.0%
! AAGATAAAGAAGAATTATGC+AGG + chr1.3:33209859-33209878 MS.gene93340:CDS 25.0%
! AATTTCACATGGATGATATT+TGG - chr1.3:33209398-33209417 None:intergenic 25.0%
! ACATAGAAACATAAAAGTCA+AGG - chr1.3:33206968-33206987 None:intergenic 25.0%
! ACATTCTCAATAATTTCACA+TGG - chr1.3:33209409-33209428 None:intergenic 25.0%
! ACTAAATGGAGCAAAATAAA+AGG - chr1.3:33207934-33207953 None:intergenic 25.0%
! ATACATGCTAACCTTTATAA+TGG - chr1.3:33207171-33207190 None:intergenic 25.0%
! ATTTCACATGGATGATATTT+GGG - chr1.3:33209397-33209416 None:intergenic 25.0%
! ATTTGAACTATTATAATCGC+GGG - chr1.3:33207030-33207049 None:intergenic 25.0%
! CAATACTTCCTTCTTTATAT+AGG - chr1.3:33206119-33206138 None:intergenic 25.0%
! GCTATCAAATTAACATGAAA+TGG + chr1.3:33206335-33206354 MS.gene93340:intron 25.0%
! GTGTTAGAAAATTGATGTAT+TGG - chr1.3:33208564-33208583 None:intergenic 25.0%
! GTTAGTAATTCTTCATTTGT+TGG + chr1.3:33206299-33206318 MS.gene93340:intron 25.0%
! TACATGCTAACCTTTATAAT+GGG - chr1.3:33207170-33207189 None:intergenic 25.0%
! TTAGGAACACAAAAAGTAAT+TGG - chr1.3:33208310-33208329 None:intergenic 25.0%
! TTTCTTGAACTTATATTCAG+TGG + chr1.3:33209031-33209050 MS.gene93340:intron 25.0%
! TTTGGTCAAATTCATCTTAA+AGG - chr1.3:33208797-33208816 None:intergenic 25.0%
!! AAAGCAAAAGTATAAAGTAC+AGG + chr1.3:33208662-33208681 MS.gene93340:CDS 25.0%
!! AACACAATAAACGATTTTTG+CGG + chr1.3:33208243-33208262 MS.gene93340:intron 25.0%
!! AAGCAAAAGTATAAAGTACA+GGG + chr1.3:33208663-33208682 MS.gene93340:CDS 25.0%
!! ACAAAAAGTAATTGGTTTAG+GGG - chr1.3:33208302-33208321 None:intergenic 25.0%
!! ACACAAAAAGTAATTGGTTT+AGG - chr1.3:33208304-33208323 None:intergenic 25.0%
!! ATGTAAATTTTCTTTGTTGC+AGG + chr1.3:33209707-33209726 MS.gene93340:intron 25.0%
!! ATTTTTCATTTAAGCACAAG+CGG + chr1.3:33206616-33206635 MS.gene93340:intron 25.0%
!! CACAAAAAGTAATTGGTTTA+GGG - chr1.3:33208303-33208322 None:intergenic 25.0%
!! GATACTATCTAATTCCATTT+TGG + chr1.3:33207534-33207553 MS.gene93340:intron 25.0%
!! TATTGAATCGATGAAAGTAT+CGG - chr1.3:33204860-33204879 None:intergenic 25.0%
!! TGTAAATTTTCTTTGTTGCA+GGG + chr1.3:33209708-33209727 MS.gene93340:intron 25.0%
!! TTTCTTTGTAATGGCTATTT+TGG + chr1.3:33209221-33209240 MS.gene93340:intron 25.0%
!! TTTGAAACTTTAAGTAGTGA+TGG - chr1.3:33207125-33207144 None:intergenic 25.0%
!!! AAATTTTTGGTGTTTGTACA+GGG + chr1.3:33208357-33208376 MS.gene93340:intron 25.0%
!!! ATGATTTGGTTGCTTTTATT+AGG + chr1.3:33205859-33205878 MS.gene93340:intron 25.0%
!!! CTTTTATGTTTCTATGTATG+AGG + chr1.3:33206971-33206990 MS.gene93340:intron 25.0%
!!! GTTGTATTTTTGTGTTATGA+AGG + chr1.3:33205472-33205491 MS.gene93340:intron 25.0%
!!! TATATAGGTAGTAATTTGCT+TGG - chr1.3:33206104-33206123 None:intergenic 25.0%
!!! TGAACTTAATGACTACTTTT+TGG + chr1.3:33206692-33206711 MS.gene93340:intron 25.0%
!!! TTTTTGATTTTTCTAGGGTT+AGG + chr1.3:33205229-33205248 MS.gene93340:intron 25.0%
AACTCCATTGCTACAATTAA+GGG + chr1.3:33206055-33206074 MS.gene93340:CDS 30.0%
AGATTTACCTATGGTGTATA+TGG - chr1.3:33209674-33209693 None:intergenic 30.0%
AGTATTGCTAGGACAATTAT+TGG + chr1.3:33208883-33208902 MS.gene93340:CDS 30.0%
AGTCACATAAGCAGTTAATA+GGG - chr1.3:33208833-33208852 None:intergenic 30.0%
ATCAATCTTCTCATACCTTA+TGG + chr1.3:33208937-33208956 MS.gene93340:CDS 30.0%
ATTCCATTCAAGTCTTTCAA+AGG + chr1.3:33205701-33205720 MS.gene93340:CDS 30.0%
ATTTCAAACTTGGTTAAGTC+AGG - chr1.3:33205584-33205603 None:intergenic 30.0%
CAATCAAAAATTCAGCTCTT+CGG - chr1.3:33210314-33210333 None:intergenic 30.0%
CACTTTATTGCCTATAGAAA+AGG + chr1.3:33208111-33208130 MS.gene93340:intron 30.0%
CTAGATTGGGTTTAAATTCA+AGG + chr1.3:33206266-33206285 MS.gene93340:CDS 30.0%
GAACATTCTTATTGTCACTA+TGG + chr1.3:33208853-33208872 MS.gene93340:CDS 30.0%
GAAGACTGGAAAAAAGAATT+GGG + chr1.3:33207348-33207367 MS.gene93340:CDS 30.0%
GTTGTTTGAAAAGGAATTTG+AGG + chr1.3:33210581-33210600 MS.gene93340:CDS 30.0%
GTTTACCATTCCCATTATAA+AGG + chr1.3:33207157-33207176 MS.gene93340:CDS 30.0%
TAACTCCATTGCTACAATTA+AGG + chr1.3:33206054-33206073 MS.gene93340:CDS 30.0%
TATCAATTTCTACTCTCAAC+CGG - chr1.3:33205025-33205044 None:intergenic 30.0%
TATGTTTCATCGCCTATTAA+TGG - chr1.3:33205086-33205105 None:intergenic 30.0%
TCAAAATCTCAAAGGAAGAA+AGG - chr1.3:33205209-33205228 None:intergenic 30.0%
TCTCAATGAAAAATCTCCAA+AGG + chr1.3:33208713-33208732 MS.gene93340:CDS 30.0%
TGAACTTGATGAAAAGGAAA+AGG + chr1.3:33210509-33210528 MS.gene93340:CDS 30.0%
TGAAGACTGGAAAAAAGAAT+TGG + chr1.3:33207347-33207366 MS.gene93340:CDS 30.0%
TGCAGTATTTGTTTGAACTT+TGG + chr1.3:33205376-33205395 MS.gene93340:intron 30.0%
TGTTTCTCCTTTCTTTGTAA+TGG + chr1.3:33209212-33209231 MS.gene93340:intron 30.0%
TTACTTACCATATACACCAT+AGG + chr1.3:33209664-33209683 MS.gene93340:intron 30.0%
TTGAATACTTGAATGAGGAT+GGG + chr1.3:33209163-33209182 MS.gene93340:CDS 30.0%
TTTAGTGGTTAACATCTCTT+TGG - chr1.3:33206242-33206261 None:intergenic 30.0%
TTTGAACTATTATAATCGCG+GGG - chr1.3:33207029-33207048 None:intergenic 30.0%
! AAAAGGTACAGATTTACCTA+TGG - chr1.3:33209683-33209702 None:intergenic 30.0%
! AAAATACCAGTTTGGTTCAA+TGG - chr1.3:33209193-33209212 None:intergenic 30.0%
! AGAACTCTAAACAACTTTTG+CGG + chr1.3:33210229-33210248 MS.gene93340:CDS 30.0%
! ATGTATCTTTTTGATGCAGA+GGG + chr1.3:33209918-33209937 MS.gene93340:CDS 30.0%
! ATTTAGTGGATCTCACTAAA+TGG - chr1.3:33207948-33207967 None:intergenic 30.0%
! GTTACAGTTTTACATCTTGT+AGG + chr1.3:33205315-33205334 MS.gene93340:intron 30.0%
! GTTTATTGTGTTGACATTGA+TGG - chr1.3:33208235-33208254 None:intergenic 30.0%
! GTTTTACATCTTGTAGGAAA+TGG + chr1.3:33205321-33205340 MS.gene93340:intron 30.0%
! TAAAGTATAGTGTAACTTGC+AGG + chr1.3:33205964-33205983 MS.gene93340:intron 30.0%
! TAACCTTTGAAAGACTTGAA+TGG - chr1.3:33205707-33205726 None:intergenic 30.0%
! TTGATTGAGATTCTGAAGAA+AGG + chr1.3:33210327-33210346 MS.gene93340:CDS 30.0%
!! ATAGTTACTCGACTTGTTTT+TGG + chr1.3:33205138-33205157 MS.gene93340:CDS 30.0%
!! ATTGAATCGATGAAAGTATC+GGG - chr1.3:33204859-33204878 None:intergenic 30.0%
!! CTTTGATTTTCCATTTGTCT+TGG + chr1.3:33205450-33205469 MS.gene93340:intron 30.0%
!! TAGTTACTCGACTTGTTTTT+GGG + chr1.3:33205139-33205158 MS.gene93340:CDS 30.0%
!! TATCTAATTCCATTTTGGTG+TGG + chr1.3:33207539-33207558 MS.gene93340:intron 30.0%
!! TGAACTTTGGTCTTTGATTT+TGG + chr1.3:33205389-33205408 MS.gene93340:intron 30.0%
!!! ACTACTTTTTGGTTTGAAGA+TGG + chr1.3:33206703-33206722 MS.gene93340:intron 30.0%
!!! ATTTTTCTAGGGTTAGGTTT+TGG + chr1.3:33205235-33205254 MS.gene93340:intron 30.0%
!!! CAAATTTTTGGTGTTTGTAC+AGG + chr1.3:33208356-33208375 MS.gene93340:intron 30.0%
!!! TTGTTGGTATTTTAAAGCTG+TGG + chr1.3:33207637-33207656 MS.gene93340:intron 30.0%
!!! TTTTTTCTGCATATCACTCA+TGG + chr1.3:33207572-33207591 MS.gene93340:intron 30.0%
AAAAGGTTGAAGGGAAATGT+CGG + chr1.3:33208128-33208147 MS.gene93340:intron 35.0%
AAAGGAAAAGGAGACTTTGA+AGG + chr1.3:33210521-33210540 MS.gene93340:CDS 35.0%
AACACAAGCTTACTCTTCTA+GGG + chr1.3:33208579-33208598 MS.gene93340:intron 35.0%
AAGACAGGTCATTTCAAACT+TGG - chr1.3:33205594-33205613 None:intergenic 35.0%
ACACTGTGAAGAATCATTTG+TGG + chr1.3:33206170-33206189 MS.gene93340:CDS 35.0%
AGAAAAAACAGCTACAACAG+AGG + chr1.3:33209785-33209804 MS.gene93340:CDS 35.0%
AGACACAAGAGATAGATTAG+TGG - chr1.3:33207981-33208000 None:intergenic 35.0%
AGGCTTCTAATTCAAAGAAG+GGG + chr1.3:33207292-33207311 MS.gene93340:intron 35.0%
ATCTCCATGTGTCAAAATCA+AGG - chr1.3:33206512-33206531 None:intergenic 35.0%
ATCTGTATAGCAACAAACCT+TGG - chr1.3:33205779-33205798 None:intergenic 35.0%
ATGCAGCATCATATAAGTCT+TGG + chr1.3:33207662-33207681 MS.gene93340:intron 35.0%
CACTGTGAAGAATCATTTGT+GGG + chr1.3:33206171-33206190 MS.gene93340:CDS 35.0%
CAGGCTTCTAATTCAAAGAA+GGG + chr1.3:33207291-33207310 MS.gene93340:intron 35.0%
CAGTCACATAAGCAGTTAAT+AGG - chr1.3:33208834-33208853 None:intergenic 35.0%
CCAATATAGTGTAGGCAAAA+GGG - chr1.3:33207612-33207631 None:intergenic 35.0%
CTATACAGTCAATGGTTTAG+TGG + chr1.3:33209516-33209535 MS.gene93340:CDS 35.0%
CTCATACCTTATGGTCAATT+TGG + chr1.3:33208946-33208965 MS.gene93340:CDS 35.0%
CTTGAATACTTGAATGAGGA+TGG + chr1.3:33209162-33209181 MS.gene93340:CDS 35.0%
CTTTCATAATTACAAGTGCC+AGG - chr1.3:33208646-33208665 None:intergenic 35.0%
GAAGGAGTTCCGTAATAATA+TGG + chr1.3:33205490-33205509 MS.gene93340:intron 35.0%
GAATCAGTTCAACTTTGATG+AGG - chr1.3:33209278-33209297 None:intergenic 35.0%
GAATGTAAGACGTTTCTTGA+AGG + chr1.3:33209423-33209442 MS.gene93340:CDS 35.0%
GAATTTAAACCCAATCTAGC+TGG - chr1.3:33206265-33206284 None:intergenic 35.0%
GACACAAGAGATAGATTAGT+GGG - chr1.3:33207980-33207999 None:intergenic 35.0%
GATCATTTATCTTTCTCTGC+AGG + chr1.3:33207272-33207291 MS.gene93340:intron 35.0%
GCAAATAGGGGTTTATGAAA+TGG + chr1.3:33209737-33209756 MS.gene93340:CDS 35.0%
GCTTCTTGAATACTTGAATG+AGG + chr1.3:33209158-33209177 MS.gene93340:CDS 35.0%
GGAGAAACAAAATACCAGTT+TGG - chr1.3:33209201-33209220 None:intergenic 35.0%
GGGTAAAACTGCAAATGATT+GGG + chr1.3:33207368-33207387 MS.gene93340:CDS 35.0%
GTATTCATCAACTTTGCGTT+TGG - chr1.3:33205540-33205559 None:intergenic 35.0%
TAAAAAAGCTGAGGATTGGA+AGG + chr1.3:33208506-33208525 MS.gene93340:CDS 35.0%
TAACACAAGCTTACTCTTCT+AGG + chr1.3:33208578-33208597 MS.gene93340:intron 35.0%
TAGACAACAACTTACAGCAA+AGG - chr1.3:33206539-33206558 None:intergenic 35.0%
TAGGGAAACTTCTGTTTGTT+TGG - chr1.3:33208815-33208834 None:intergenic 35.0%
TCAGTAAAAAAGCTGAGGAT+TGG + chr1.3:33208502-33208521 MS.gene93340:CDS 35.0%
TGAAATGACCTGTCTTGAAA+AGG + chr1.3:33205598-33205617 MS.gene93340:CDS 35.0%
TGATTACAGTTCAAAAGAGC+AGG + chr1.3:33210383-33210402 MS.gene93340:CDS 35.0%
TGCCTATAGAAAAGGTTGAA+GGG + chr1.3:33208119-33208138 MS.gene93340:intron 35.0%
TGCTAGGACAATTATTGGAA+TGG + chr1.3:33208888-33208907 MS.gene93340:CDS 35.0%
TGGGTAAAACTGCAAATGAT+TGG + chr1.3:33207367-33207386 MS.gene93340:CDS 35.0%
TTCACGCTGCTGATAAAAAA+CGG + chr1.3:33204982-33205001 MS.gene93340:CDS 35.0%
TTCTTCTCTAGATATTCCTG+CGG - chr1.3:33210210-33210229 None:intergenic 35.0%
TTGAAGAGTTCTGTAGACTT+CGG + chr1.3:33210067-33210086 MS.gene93340:CDS 35.0%
TTGCCTATAGAAAAGGTTGA+AGG + chr1.3:33208118-33208137 MS.gene93340:intron 35.0%
TTTCTTCTTGAATTGTGCTC+AGG + chr1.3:33205733-33205752 MS.gene93340:CDS 35.0%
TTTCTTGAAGGAAGAGGAAA+TGG + chr1.3:33209435-33209454 MS.gene93340:CDS 35.0%
! AAACAATGGGTTTACGAAGA+CGG + chr1.3:33204894-33204913 MS.gene93340:CDS 35.0%
! AAGAAGGGTATACTTTGTTC+TGG - chr1.3:33209966-33209985 None:intergenic 35.0%
! ACTCGCATTTTATCAAACAC+AGG + chr1.3:33208059-33208078 MS.gene93340:intron 35.0%
! AGAAGGGTATACTTTGTTCT+GGG - chr1.3:33209965-33209984 None:intergenic 35.0%
! CATGTATCTTTTTGATGCAG+AGG + chr1.3:33209917-33209936 MS.gene93340:CDS 35.0%
! CGAAGATTTTGTAGAGATCA+GGG - chr1.3:33204950-33204969 None:intergenic 35.0%
! CGATCTCATGTTGTTTGAAA+AGG + chr1.3:33210572-33210591 MS.gene93340:CDS 35.0%
! CTGCAAGTGCTCAAAATTTT+TGG + chr1.3:33205426-33205445 MS.gene93340:intron 35.0%
! CTTTCCTTGGTGAAATTTTC+AGG - chr1.3:33210471-33210490 None:intergenic 35.0%
! GAAGTATTATGCGAAGAGAA+AGG + chr1.3:33210092-33210111 MS.gene93340:CDS 35.0%
! GAGATTTCTGTTTGCTACAA+CGG + chr1.3:33205056-33205075 MS.gene93340:CDS 35.0%
! GATGATGATGATGAACAAGA+TGG + chr1.3:33208453-33208472 MS.gene93340:CDS 35.0%
! GCTAACCTTTATAATGGGAA+TGG - chr1.3:33207165-33207184 None:intergenic 35.0%
! GGTTTTCATCCTTTTGGATT+TGG + chr1.3:33208149-33208168 MS.gene93340:intron 35.0%
! TCGAAGATTTTGTAGAGATC+AGG - chr1.3:33204951-33204970 None:intergenic 35.0%
! TGTGTGATTTAGGATGAAGA+TGG + chr1.3:33207053-33207072 MS.gene93340:intron 35.0%
! TTAAATTCAAGGCTGACTCA+TGG + chr1.3:33206277-33206296 MS.gene93340:CDS 35.0%
! TTCCCTTCAACCTTTTCTAT+AGG - chr1.3:33208124-33208143 None:intergenic 35.0%
! TTTAGGGGAACACAGTATTT+TGG - chr1.3:33208287-33208306 None:intergenic 35.0%
! TTTCTTTGTTGCAGGGTTTT+AGG + chr1.3:33209715-33209734 MS.gene93340:intron 35.0%
!! AGTACTGTAAGGTTTGTTGT+TGG + chr1.3:33207397-33207416 MS.gene93340:intron 35.0%
!! ATAACTTTTGGGAACTTGCA+TGG - chr1.3:33209086-33209105 None:intergenic 35.0%
!! ATGGTGAACAAAGTATTGCT+AGG + chr1.3:33208872-33208891 MS.gene93340:CDS 35.0%
!! CTCTTTGGTTTGAGAATGAA+AGG - chr1.3:33206227-33206246 None:intergenic 35.0%
!! GAAGGAAGTATTGAAGAAGA+AGG + chr1.3:33206126-33206145 MS.gene93340:CDS 35.0%
!! GATGCAGAATCTTTGAGATA+TGG + chr1.3:33206881-33206900 MS.gene93340:CDS 35.0%
!! TACAACATCCTTTTCAAGAC+AGG - chr1.3:33205609-33205628 None:intergenic 35.0%
!! TGTACCTTGATTTTGACACA+TGG + chr1.3:33206505-33206524 MS.gene93340:CDS 35.0%
!! TTGGGAGATAAAGTACTGTA+AGG + chr1.3:33207386-33207405 MS.gene93340:CDS 35.0%
!!! AATGTCGGTTTTCATCCTTT+TGG + chr1.3:33208143-33208162 MS.gene93340:intron 35.0%
!!! TCTGTTGTAGCTGTTTTTTC+TGG - chr1.3:33209786-33209805 None:intergenic 35.0%
AACCACTAAACCAGCTAGAT+TGG + chr1.3:33206252-33206271 MS.gene93340:CDS 40.0%
AACTTCCACTTCAATTGAGC+TGG + chr1.3:33208476-33208495 MS.gene93340:CDS 40.0%
AAGACGTTTCTTGAAGGAAG+AGG + chr1.3:33209429-33209448 MS.gene93340:CDS 40.0%
AAGAGCTTCCTATTCGAAAG+TGG + chr1.3:33209569-33209588 MS.gene93340:CDS 40.0%
AATACTTGAATGAGGATGGG+AGG + chr1.3:33209166-33209185 MS.gene93340:CDS 40.0%
AATTCAGCTCTTCGGTAGAT+CGG - chr1.3:33210306-33210325 None:intergenic 40.0%
ACCACTAAACCAGCTAGATT+GGG + chr1.3:33206253-33206272 MS.gene93340:CDS 40.0%
ACTGTTAGTGTGTCTCAAAG+AGG + chr1.3:33207447-33207466 MS.gene93340:intron 40.0%
AGAACTAAAACATGTCCCCA+TGG - chr1.3:33209368-33209387 None:intergenic 40.0%
AGTATCCCTTCTGATGAAGA+AGG - chr1.3:33207520-33207539 None:intergenic 40.0%
ATGATTGGTATGTACCTGTG+TGG - chr1.3:33209316-33209335 None:intergenic 40.0%
ATTTGCCTGAGTCTAAGTGA+CGG + chr1.3:33205912-33205931 MS.gene93340:CDS 40.0%
CAAGCAAGCCAATATAGTGT+AGG - chr1.3:33207620-33207639 None:intergenic 40.0%
CAATGAAACCATGGTACAGA+GGG + chr1.3:33209461-33209480 MS.gene93340:CDS 40.0%
CAGAAAACTGTAGCGACATT+GGG + chr1.3:33210417-33210436 MS.gene93340:CDS 40.0%
CAGCAAATTGCTCAATGTGA+GGG + chr1.3:33206778-33206797 MS.gene93340:CDS 40.0%
CCATTGCTACAATTAAGGGT+GGG + chr1.3:33206059-33206078 MS.gene93340:CDS 40.0%
CTATGCAGCAATATGAAGAC+TGG + chr1.3:33207334-33207353 MS.gene93340:CDS 40.0%
CTCCAAGCTATCACTTAGTT+TGG - chr1.3:33205892-33205911 None:intergenic 40.0%
CTTGGTTAAGTCAGGCTTAA+AGG - chr1.3:33205576-33205595 None:intergenic 40.0%
GACAATTATTGGAATGGCAC+AGG + chr1.3:33208894-33208913 MS.gene93340:CDS 40.0%
GCAGGCTTCTAATTCAAAGA+AGG + chr1.3:33207290-33207309 MS.gene93340:intron 40.0%
GCCAATATAGTGTAGGCAAA+AGG - chr1.3:33207613-33207632 None:intergenic 40.0%
GGAAGCTGAACTTGATGAAA+AGG + chr1.3:33210503-33210522 MS.gene93340:CDS 40.0%
GGATGTTAAGTTTGAGCGAA+TGG + chr1.3:33205511-33205530 MS.gene93340:CDS 40.0%
GGCATTCAGTAAAAAAGCTG+AGG + chr1.3:33208497-33208516 MS.gene93340:CDS 40.0%
GTATCCCTTCTGATGAAGAA+GGG - chr1.3:33207519-33207538 None:intergenic 40.0%
TAACCCAAGCCAAATCCAAA+AGG - chr1.3:33208161-33208180 None:intergenic 40.0%
TACAACGGTGCTCCATTAAT+AGG + chr1.3:33205071-33205090 MS.gene93340:CDS 40.0%
TATAGCAACAAACCTTGGCA+GGG - chr1.3:33205774-33205793 None:intergenic 40.0%
TATCCCTTCTGATGAAGAAG+GGG - chr1.3:33207518-33207537 None:intergenic 40.0%
TCAAGATCTTGATGAGCACA+GGG + chr1.3:33208413-33208432 MS.gene93340:CDS 40.0%
TCAATGGAAACACACCATAG+AGG - chr1.3:33206757-33206776 None:intergenic 40.0%
TCCATTGCTACAATTAAGGG+TGG + chr1.3:33206058-33206077 MS.gene93340:CDS 40.0%
TCTTCCTTTGACCAAGTGTA+AGG - chr1.3:33208762-33208781 None:intergenic 40.0%
TCTTCTCTAGATATTCCTGC+GGG - chr1.3:33210209-33210228 None:intergenic 40.0%
TCTTGAGTCCACTTTCGAAT+AGG - chr1.3:33209580-33209599 None:intergenic 40.0%
TGCCAAACTAAGTGATAGCT+TGG + chr1.3:33205887-33205906 MS.gene93340:CDS 40.0%
TGGATAAGTTGCTTGTTCCA+GGG + chr1.3:33209051-33209070 MS.gene93340:intron 40.0%
TGGTTTGAGAATGAAAGGCA+GGG - chr1.3:33206222-33206241 None:intergenic 40.0%
TTAGTGTGTCTCAAAGAGGT+TGG + chr1.3:33207451-33207470 MS.gene93340:intron 40.0%
TTAGTTCAACCGTAACACCA+AGG - chr1.3:33205670-33205689 None:intergenic 40.0%
TTCAAACGTATCCATATCCG+TGG - chr1.3:33206424-33206443 None:intergenic 40.0%
TTCAAGATCTTGATGAGCAC+AGG + chr1.3:33208412-33208431 MS.gene93340:CDS 40.0%
! AAATGGTGCCAATGAAACCA+TGG + chr1.3:33209452-33209471 MS.gene93340:CDS 40.0%
! AAGGTACATTTTCCACGCTT+GGG - chr1.3:33206493-33206512 None:intergenic 40.0%
! ACGTTTGAAACAAACGCATG+TGG + chr1.3:33206435-33206454 MS.gene93340:CDS 40.0%
! AGCACAGGGCATATTTTGTT+TGG + chr1.3:33208427-33208446 MS.gene93340:CDS 40.0%
! ATTCCTCTCGTGCTTGTTAA+TGG + chr1.3:33209334-33209353 MS.gene93340:CDS 40.0%
! CCCTTTTGCCTACACTATAT+TGG + chr1.3:33207609-33207628 MS.gene93340:intron 40.0%
! CTTTAAGTTACTCGCCTGAT+TGG - chr1.3:33206924-33206943 None:intergenic 40.0%
! GAAGGGTATACTTTGTTCTG+GGG - chr1.3:33209964-33209983 None:intergenic 40.0%
! GATTGGCCATAATCATCAAC+CGG - chr1.3:33206907-33206926 None:intergenic 40.0%
! GTGGGACTCTTTTCATTTAG+TGG - chr1.3:33207962-33207981 None:intergenic 40.0%
! TCATCCTTTTGGATTTGGCT+TGG + chr1.3:33208154-33208173 MS.gene93340:intron 40.0%
! TGTGGGTTTTTGTCAATGCT+CGG + chr1.3:33206188-33206207 MS.gene93340:CDS 40.0%
! TTGGTTTGAGAATGAAAGGC+AGG - chr1.3:33206223-33206242 None:intergenic 40.0%
! TTTGATGAAAAAGCGTGTGC+TGG + chr1.3:33205631-33205650 MS.gene93340:CDS 40.0%
!! AACCATTAAGGAAAGTGCCA+AGG + chr1.3:33209492-33209511 MS.gene93340:CDS 40.0%
!! ACCATTAAGGAAAGTGCCAA+GGG + chr1.3:33209493-33209512 MS.gene93340:CDS 40.0%
!! AGTTGATGAATACTCGACCA+CGG + chr1.3:33205547-33205566 MS.gene93340:CDS 40.0%
!! ATATGGCCGGTTGATGATTA+TGG + chr1.3:33206898-33206917 MS.gene93340:CDS 40.0%
!! ATTCCATTTTGGTGTGGCAT+TGG + chr1.3:33207545-33207564 MS.gene93340:intron 40.0%
!! CACTATATTGGCTTGCTTGT+TGG + chr1.3:33207621-33207640 MS.gene93340:intron 40.0%
!! CAGAATCTTTGAGATATGGC+CGG + chr1.3:33206885-33206904 MS.gene93340:CDS 40.0%
!! CATCCTTTTGGATTTGGCTT+GGG + chr1.3:33208155-33208174 MS.gene93340:intron 40.0%
!! GCACAGGGCATATTTTGTTT+GGG + chr1.3:33208428-33208447 MS.gene93340:CDS 40.0%
!! GTTGAGTTTGCTGATGAACT+GGG + chr1.3:33205161-33205180 MS.gene93340:CDS 40.0%
!! GTTGATGATTATGGCCAATC+AGG + chr1.3:33206907-33206926 MS.gene93340:CDS 40.0%
!! TCCTTGGTGAAATTTTCAGG+AGG - chr1.3:33210468-33210487 None:intergenic 40.0%
!! TCGTTTAACCACATTGACTC+TGG - chr1.3:33210555-33210574 None:intergenic 40.0%
!! TTGAGCAATTTGCTGCTCAA+TGG - chr1.3:33206773-33206792 None:intergenic 40.0%
!! TTGAGTTTGCTGATGAACTG+GGG + chr1.3:33205162-33205181 MS.gene93340:CDS 40.0%
!!! CTTTTTGGTTTGAAGATGGC+CGG + chr1.3:33206707-33206726 MS.gene93340:intron 40.0%
!!! TGCAGGGTTTTAGGCAAATA+GGG + chr1.3:33209724-33209743 MS.gene93340:intron 40.0%
!!! TTGCAGGGTTTTAGGCAAAT+AGG + chr1.3:33209723-33209742 MS.gene93340:intron 40.0%
!!! TTTTGGATTTGGCTTGGGTT+AGG + chr1.3:33208160-33208179 MS.gene93340:intron 40.0%
!!! TTTTTGGTTTGAAGATGGCC+GGG + chr1.3:33206708-33206727 MS.gene93340:intron 40.0%
AACAAACCTTGGCAGGGAAA+AGG - chr1.3:33205768-33205787 None:intergenic 45.0%
AACGTATCCATATCCGTGGT+AGG - chr1.3:33206420-33206439 None:intergenic 45.0%
AATTCTGCTTGTCACCACAC+AGG + chr1.3:33209299-33209318 MS.gene93340:intron 45.0%
ACAAACCTTGGCAGGGAAAA+GGG - chr1.3:33205767-33205786 None:intergenic 45.0%
ACAAGCACGAGAGGAATGAT+TGG - chr1.3:33209331-33209350 None:intergenic 45.0%
ACACCAATGCCACACCAAAA+TGG - chr1.3:33207551-33207570 None:intergenic 45.0%
ACCCATGAGCTGTAGGAAAT+AGG + chr1.3:33208204-33208223 MS.gene93340:intron 45.0%
AGAAGCTTATCATCATCCGC+AGG - chr1.3:33209144-33209163 None:intergenic 45.0%
AGGGTTCAGAGGAACCATTA+AGG + chr1.3:33209480-33209499 MS.gene93340:CDS 45.0%
ATAAGTTGCTTGTTCCAGGG+TGG + chr1.3:33209054-33209073 MS.gene93340:intron 45.0%
ATACCTCACCAGAGTCAATG+TGG + chr1.3:33210544-33210563 MS.gene93340:CDS 45.0%
ATTCAGCTCTTCGGTAGATC+GGG - chr1.3:33210305-33210324 None:intergenic 45.0%
ATTTCCTACAGCTCATGGGT+GGG - chr1.3:33208204-33208223 None:intergenic 45.0%
CAACCATTAACAAGCACGAG+AGG - chr1.3:33209340-33209359 None:intergenic 45.0%
CAGATTCTGATGACCGTTCT+TGG + chr1.3:33206833-33206852 MS.gene93340:CDS 45.0%
CAGGCTGCATCATCTGATAA+TGG - chr1.3:33208627-33208646 None:intergenic 45.0%
CATTATCAGATGATGCAGCC+TGG + chr1.3:33208625-33208644 MS.gene93340:intron 45.0%
CCAATGAAACCATGGTACAG+AGG + chr1.3:33209460-33209479 MS.gene93340:CDS 45.0%
CCCACCCTTAATTGTAGCAA+TGG - chr1.3:33206062-33206081 None:intergenic 45.0%
CCTCTGTACCATGGTTTCAT+TGG - chr1.3:33209463-33209482 None:intergenic 45.0%
CCTTGCCAAAAAAACTGCTC+AGG + chr1.3:33209612-33209631 MS.gene93340:CDS 45.0%
CGAGTGCCAAATTGACCATA+AGG - chr1.3:33208955-33208974 None:intergenic 45.0%
GAAGATGGCGCTCACTTAAA+AGG + chr1.3:33207068-33207087 MS.gene93340:CDS 45.0%
GAAGCTTATCATCATCCGCA+GGG - chr1.3:33209143-33209162 None:intergenic 45.0%
GAATGCCAGCTCAATTGAAG+TGG - chr1.3:33208484-33208503 None:intergenic 45.0%
GCAGAAAACTGTAGCGACAT+TGG + chr1.3:33210416-33210435 MS.gene93340:CDS 45.0%
GCAGCAAATTGCTCAATGTG+AGG + chr1.3:33206777-33206796 MS.gene93340:CDS 45.0%
GCATGACGCATTCACAACAT+CGG - chr1.3:33210283-33210302 None:intergenic 45.0%
GCCTATTTCCTACAGCTCAT+GGG - chr1.3:33208208-33208227 None:intergenic 45.0%
GCCTCCTGAAAATTTCACCA+AGG + chr1.3:33210464-33210483 MS.gene93340:CDS 45.0%
GGCTTGGATTTGTAACTCTC+AGG + chr1.3:33208527-33208546 MS.gene93340:CDS 45.0%
GTAAGGCCATCTACCATAGA+CGG - chr1.3:33208745-33208764 None:intergenic 45.0%
GTATAGCAACAAACCTTGGC+AGG - chr1.3:33205775-33205794 None:intergenic 45.0%
GTGGATAAGTTGCTTGTTCC+AGG + chr1.3:33209050-33209069 MS.gene93340:intron 45.0%
GTTAATGGTTGCCATGCCAT+GGG + chr1.3:33209349-33209368 MS.gene93340:CDS 45.0%
GTTTCGCACAAGTCCAAGAA+CGG - chr1.3:33206849-33206868 None:intergenic 45.0%
TAAAACATGTCCCCATGGCA+TGG - chr1.3:33209363-33209382 None:intergenic 45.0%
TATCCATATCCGTGGTAGGA+GGG - chr1.3:33206416-33206435 None:intergenic 45.0%
TATTTCCTACAGCTCATGGG+TGG - chr1.3:33208205-33208224 None:intergenic 45.0%
TCATTTGCACCTGCAACTTG+TGG - chr1.3:33210366-33210385 None:intergenic 45.0%
TCCATTCCGTCTATGGTAGA+TGG + chr1.3:33208736-33208755 MS.gene93340:CDS 45.0%
TGAGAACTCAATCTGCGTGT+GGG + chr1.3:33205806-33205825 MS.gene93340:intron 45.0%
TGGAGTTAACAAAGCTGACC+TGG - chr1.3:33206042-33206061 None:intergenic 45.0%
TGTTAATGGTTGCCATGCCA+TGG + chr1.3:33209348-33209367 MS.gene93340:CDS 45.0%
TTAATGGTTGCCATGCCATG+GGG + chr1.3:33209350-33209369 MS.gene93340:CDS 45.0%
TTGAGAACTCAATCTGCGTG+TGG + chr1.3:33205805-33205824 MS.gene93340:intron 45.0%
TTGTGCTAATAGTGCACGAC+AGG - chr1.3:33209893-33209912 None:intergenic 45.0%
TTTGCCTGAGTCTAAGTGAC+GGG + chr1.3:33205913-33205932 MS.gene93340:CDS 45.0%
! AAGTGACGGGAAGTTTCAAC+AGG + chr1.3:33205926-33205945 MS.gene93340:CDS 45.0%
! ACCATTGACTGTATAGCCCT+TGG - chr1.3:33209512-33209531 None:intergenic 45.0%
! ACCCAATCTAGCTGGTTTAG+TGG - chr1.3:33206257-33206276 None:intergenic 45.0%
! ATGGCCTTACACTTGGTCAA+AGG + chr1.3:33208755-33208774 MS.gene93340:CDS 45.0%
! ATGGTAGATGGCCTTACACT+TGG + chr1.3:33208748-33208767 MS.gene93340:CDS 45.0%
! CAAGGTACATTTTCCACGCT+TGG - chr1.3:33206494-33206513 None:intergenic 45.0%
! GGAATGGCACAGGATTTTGT+GGG + chr1.3:33208904-33208923 MS.gene93340:CDS 45.0%
! TGGAATGGCACAGGATTTTG+TGG + chr1.3:33208903-33208922 MS.gene93340:CDS 45.0%
! TTCTACTCTCAACCGGTTCA+TGG - chr1.3:33205018-33205037 None:intergenic 45.0%
! TTTTATCAGCAGCGTGAACG+AGG - chr1.3:33204980-33204999 None:intergenic 45.0%
!! GGTGAAATTTTCAGGAGGCA+AGG - chr1.3:33210463-33210482 None:intergenic 45.0%
!! GGTTGAGTTTGCTGATGAAC+TGG + chr1.3:33205160-33205179 MS.gene93340:CDS 45.0%
!! TAACCACATTGACTCTGGTG+AGG - chr1.3:33210550-33210569 None:intergenic 45.0%
!! TGAAGAAGGGGCTCTAAAAG+AGG - chr1.3:33207506-33207525 None:intergenic 45.0%
!!! CCTGAGCAGTTTTTTTGGCA+AGG - chr1.3:33209615-33209634 None:intergenic 45.0%
!!! GCAGGGTTTTAGGCAAATAG+GGG + chr1.3:33209725-33209744 MS.gene93340:intron 45.0%
!!! TTTTGGTTTGAAGATGGCCG+GGG + chr1.3:33206709-33206728 MS.gene93340:intron 45.0%
!! ATATATATATATCTATTAAA+TGG + chr1.3:33208025-33208044 MS.gene93340:intron 5.0%
!! TATTATTAATTATTTCAATA+AGG - chr1.3:33207871-33207890 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTGA+GGG + chr1.3:33207712-33207731 MS.gene93340:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+AGG + chr1.3:33207711-33207730 MS.gene93340:intron 5.0%
AAACCCTCCTACCACGGATA+TGG + chr1.3:33206410-33206429 MS.gene93340:CDS 50.0%
AACGCATGTGGAAACGCATG+TGG + chr1.3:33206447-33206466 MS.gene93340:CDS 50.0%
AACGCATGTGGAAGCCATGT+TGG + chr1.3:33206459-33206478 MS.gene93340:CDS 50.0%
AACTCAATCTGCGTGTGGGT+TGG + chr1.3:33205810-33205829 MS.gene93340:intron 50.0%
AAGCTGAGGATTGGAAGGCT+TGG + chr1.3:33208511-33208530 MS.gene93340:CDS 50.0%
ACTTCCCGTCACTTAGACTC+AGG - chr1.3:33205920-33205939 None:intergenic 50.0%
AGAGCCCCTTCTTCATCAGA+AGG + chr1.3:33207511-33207530 MS.gene93340:intron 50.0%
CAGCTTCACAAGGCTTTCCT+TGG - chr1.3:33210484-33210503 None:intergenic 50.0%
CCAAAGGTCCATTCCGTCTA+TGG + chr1.3:33208729-33208748 MS.gene93340:CDS 50.0%
CCATAGACGGAATGGACCTT+TGG - chr1.3:33208732-33208751 None:intergenic 50.0%
CGCCTATTTCCTACAGCTCA+TGG - chr1.3:33208209-33208228 None:intergenic 50.0%
GAGCCCCTTCTTCATCAGAA+GGG + chr1.3:33207512-33207531 MS.gene93340:intron 50.0%
GCACAAGCGGTTGAAGCTTA+TGG + chr1.3:33206629-33206648 MS.gene93340:intron 50.0%
GCCAAGGGCTATACAGTCAA+TGG + chr1.3:33209508-33209527 MS.gene93340:CDS 50.0%
GCCATCTACCATAGACGGAA+TGG - chr1.3:33208740-33208759 None:intergenic 50.0%
GCCCTTGGCACTTTCCTTAA+TGG - chr1.3:33209497-33209516 None:intergenic 50.0%
GGAAACACACCATAGAGGTC+TGG - chr1.3:33206752-33206771 None:intergenic 50.0%
GGAGGTCCATTGAACCAAAC+TGG + chr1.3:33209184-33209203 MS.gene93340:CDS 50.0%
GTATCCATATCCGTGGTAGG+AGG - chr1.3:33206417-33206436 None:intergenic 50.0%
GTTCAGCTTCCAGCTTCACA+AGG - chr1.3:33210494-33210513 None:intergenic 50.0%
TATCATCATCCGCAGGGAAG+AGG - chr1.3:33209137-33209156 None:intergenic 50.0%
TCAATTTGGCACTCGTGACC+TGG + chr1.3:33208960-33208979 MS.gene93340:CDS 50.0%
TCTGCAGAACCACAAGTTGC+AGG + chr1.3:33210354-33210373 MS.gene93340:CDS 50.0%
TTGCATGGTCTTTACCACCC+TGG - chr1.3:33209071-33209090 None:intergenic 50.0%
TTGCGAAAACCCTCCTACCA+CGG + chr1.3:33206404-33206423 MS.gene93340:CDS 50.0%
! ACTCTCAACCGGTTCATGGT+TGG - chr1.3:33205014-33205033 None:intergenic 50.0%
! CAAGGAAAGCCTTGTGAAGC+TGG + chr1.3:33210482-33210501 MS.gene93340:CDS 50.0%
! CAGGGACGTACGAGATTTTG+CGG - chr1.3:33204932-33204951 None:intergenic 50.0%
! GAAAAAGCGTGTGCTGGACA+TGG + chr1.3:33205637-33205656 MS.gene93340:CDS 50.0%
!! ATTTGGCTTGGGTTAGGCCA+TGG + chr1.3:33208166-33208185 MS.gene93340:intron 50.0%
!! TTATGCCGGTTCATCTCACC+AGG - chr1.3:33208981-33209000 None:intergenic 50.0%
!!! GTGCGCCTGAGCAGTTTTTT+TGG - chr1.3:33209620-33209639 None:intergenic 50.0%
AACTGCTCAGGCGCACATTG+AGG + chr1.3:33209624-33209643 MS.gene93340:CDS 55.0%
CATGTGGAAGCCATGTTGGC+TGG + chr1.3:33206463-33206482 MS.gene93340:CDS 55.0%
CCACCACCACCATGGAGAAA+CGG + chr1.3:33204827-33204846 MS.gene93340:CDS 55.0%
CCATGGTACAGAGGGTTCAG+AGG + chr1.3:33209469-33209488 MS.gene93340:CDS 55.0%
CCTCTGAACCCTCTGTACCA+TGG - chr1.3:33209472-33209491 None:intergenic 55.0%
CCTTGGCAGGGAAAAGGGTT+TGG - chr1.3:33205762-33205781 None:intergenic 55.0%
CGTGACCTGGTGAGATGAAC+CGG + chr1.3:33208973-33208992 MS.gene93340:intron 55.0%
GGCGAGATCCAACCATGAAC+CGG + chr1.3:33205003-33205022 MS.gene93340:CDS 55.0%
GTCAGGCTTAAAGGTCACCG+TGG - chr1.3:33205567-33205586 None:intergenic 55.0%
TACTCGTCTCCTCTTCCCTG+CGG + chr1.3:33209125-33209144 MS.gene93340:CDS 55.0%
TGAACTGGGGACTACGAGAG+AGG + chr1.3:33205175-33205194 MS.gene93340:CDS 55.0%
TTCGCACCGTTTCTCCATGG+TGG - chr1.3:33204836-33204855 None:intergenic 55.0%
! CCAAACCCTTTTCCCTGCCA+AGG + chr1.3:33205759-33205778 MS.gene93340:CDS 55.0%
!! GAAGGGGCTCTAAAAGAGGC+TGG - chr1.3:33207502-33207521 None:intergenic 55.0%
!! GTGGTGGATCCAGACCTCTA+TGG + chr1.3:33206740-33206759 MS.gene93340:CDS 55.0%
AAGCGTGTGCTGGACATGGC+AGG + chr1.3:33205641-33205660 MS.gene93340:CDS 60.0%
ACTGGGGACTACGAGAGAGG+TGG + chr1.3:33205178-33205197 MS.gene93340:intron 60.0%
AGCGTGTGCTGGACATGGCA+GGG + chr1.3:33205642-33205661 MS.gene93340:CDS 60.0%
ATCCACCACAGCAGAGTCCC+CGG - chr1.3:33206729-33206748 None:intergenic 60.0%
GCACCGTTTCTCCATGGTGG+TGG - chr1.3:33204833-33204852 None:intergenic 60.0%
GGGTTCGCACCGTTTCTCCA+TGG - chr1.3:33204839-33204858 None:intergenic 60.0%
TGCAAGTTGTGCTTGCCCGC+AGG + chr1.3:33210191-33210210 MS.gene93340:intron 60.0%
! GTGGAAGCCATGTTGGCTGG+CGG + chr1.3:33206466-33206485 MS.gene93340:CDS 60.0%
!! CCGTTTCTCCATGGTGGTGG+TGG - chr1.3:33204830-33204849 None:intergenic 60.0%
!! GGCAGGGTGCCTTGGTGTTA+CGG + chr1.3:33205658-33205677 MS.gene93340:CDS 60.0%
ACAGGGCTTGACTGCTGCGC+AGG + chr1.3:33208374-33208393 MS.gene93340:intron 65.0%
CCTACAGCTCATGGGTGGGC+AGG - chr1.3:33208200-33208219 None:intergenic 65.0%
CCTGCCCACCCATGAGCTGT+AGG + chr1.3:33208197-33208216 MS.gene93340:intron 65.0%
CGACGACACCACCACCACCA+TGG + chr1.3:33204819-33204838 MS.gene93340:CDS 65.0%
CTTGGGTCCGCCAGCCAACA+TGG - chr1.3:33206476-33206495 None:intergenic 65.0%
GTGGGCAGGTTGTGCAGCCA+TGG - chr1.3:33208186-33208205 None:intergenic 65.0%
! CTGGACATGGCAGGGTGCCT+TGG + chr1.3:33205650-33205669 MS.gene93340:CDS 65.0%
GATGGCCGGGGACTCTGCTG+TGG + chr1.3:33206721-33206740 MS.gene93340:intron 70.0%
! TTGGCTGGCGGACCCAAGCG+TGG + chr1.3:33206478-33206497 MS.gene93340:CDS 70.0%
GGCCGGGGACTCTGCTGTGG+TGG + chr1.3:33206724-33206743 MS.gene93340:CDS 75.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 33204810 33210632 33204810 ID=MS.gene93340
chr1.3 mRNA 33204810 33210632 33204810 ID=MS.gene93340.t1;Parent=MS.gene93340
chr1.3 exon 33204810 33205196 33204810 ID=MS.gene93340.t1.exon1;Parent=MS.gene93340.t1
chr1.3 CDS 33204810 33205196 33204810 ID=cds.MS.gene93340.t1;Parent=MS.gene93340.t1
chr1.3 exon 33205494 33205780 33205494 ID=MS.gene93340.t1.exon2;Parent=MS.gene93340.t1
chr1.3 CDS 33205494 33205780 33205494 ID=cds.MS.gene93340.t1;Parent=MS.gene93340.t1
chr1.3 exon 33205881 33205947 33205881 ID=MS.gene93340.t1.exon3;Parent=MS.gene93340.t1
chr1.3 CDS 33205881 33205947 33205881 ID=cds.MS.gene93340.t1;Parent=MS.gene93340.t1
chr1.3 exon 33206043 33206298 33206043 ID=MS.gene93340.t1.exon4;Parent=MS.gene93340.t1
chr1.3 CDS 33206043 33206298 33206043 ID=cds.MS.gene93340.t1;Parent=MS.gene93340.t1
chr1.3 exon 33206389 33206543 33206389 ID=MS.gene93340.t1.exon5;Parent=MS.gene93340.t1
chr1.3 CDS 33206389 33206543 33206389 ID=cds.MS.gene93340.t1;Parent=MS.gene93340.t1
chr1.3 exon 33206722 33206928 33206722 ID=MS.gene93340.t1.exon6;Parent=MS.gene93340.t1
chr1.3 CDS 33206722 33206928 33206722 ID=cds.MS.gene93340.t1;Parent=MS.gene93340.t1
chr1.3 exon 33207065 33207178 33207065 ID=MS.gene93340.t1.exon7;Parent=MS.gene93340.t1
chr1.3 CDS 33207065 33207178 33207065 ID=cds.MS.gene93340.t1;Parent=MS.gene93340.t1
chr1.3 exon 33207294 33207407 33207294 ID=MS.gene93340.t1.exon8;Parent=MS.gene93340.t1
chr1.3 CDS 33207294 33207407 33207294 ID=cds.MS.gene93340.t1;Parent=MS.gene93340.t1
chr1.3 exon 33208378 33208548 33208378 ID=MS.gene93340.t1.exon9;Parent=MS.gene93340.t1
chr1.3 CDS 33208378 33208548 33208378 ID=cds.MS.gene93340.t1;Parent=MS.gene93340.t1
chr1.3 exon 33208634 33208981 33208634 ID=MS.gene93340.t1.exon10;Parent=MS.gene93340.t1
chr1.3 CDS 33208634 33208981 33208634 ID=cds.MS.gene93340.t1;Parent=MS.gene93340.t1
chr1.3 exon 33209072 33209205 33209072 ID=MS.gene93340.t1.exon11;Parent=MS.gene93340.t1
chr1.3 CDS 33209072 33209205 33209072 ID=cds.MS.gene93340.t1;Parent=MS.gene93340.t1
chr1.3 exon 33209321 33209645 33209321 ID=MS.gene93340.t1.exon12;Parent=MS.gene93340.t1
chr1.3 CDS 33209321 33209645 33209321 ID=cds.MS.gene93340.t1;Parent=MS.gene93340.t1
chr1.3 exon 33209729 33209972 33209729 ID=MS.gene93340.t1.exon13;Parent=MS.gene93340.t1
chr1.3 CDS 33209729 33209972 33209729 ID=cds.MS.gene93340.t1;Parent=MS.gene93340.t1
chr1.3 exon 33210064 33210113 33210064 ID=MS.gene93340.t1.exon14;Parent=MS.gene93340.t1
chr1.3 CDS 33210064 33210113 33210064 ID=cds.MS.gene93340.t1;Parent=MS.gene93340.t1
chr1.3 exon 33210213 33210632 33210213 ID=MS.gene93340.t1.exon15;Parent=MS.gene93340.t1
chr1.3 CDS 33210213 33210632 33210213 ID=cds.MS.gene93340.t1;Parent=MS.gene93340.t1
Gene Sequence

>MS.gene93340

ATGGGTCTACGACGACACCACCACCACCATGGAGAAACGGTGCGAACCCGATACTTTCATCGATTCAATAAAAAAAAAACAGAGAAACAATGGGTTTACGAAGACGGCAAAATAGTTCACCGCAAAATCTCGTACGTCCCTGATCTCTACAAAATCTTCGACATAATCCTCGTTCACGCTGCTGATAAAAAACGGCGAGATCCAACCATGAACCGGTTGAGAGTAGAAATTGATACTAAGATGAATGAGATTTCTGTTTGCTACAACGGTGCTCCATTAATAGGCGATGAAACATATGATGATGTAATAAACATTTTTCATCTCACGAATAGTTACTCGACTTGTTTTTGGGTTGAGTTTGCTGATGAACTGGGGACTACGAGAGAGGTGGTTATTCCTTTCTTCCTTTGAGATTTTGATTTTTGATTTTTCTAGGGTTAGGTTTTGGTGCTATGAACTAAAATTAAATTTAGGTATGTTATGTTAATTGTTGATTTAGAATCATGTTACAGTTTTACATCTTGTAGGAAATGGACCTGTATTTTATATTTCTGCTATCATCTCGTTGCAGTATTTGTTTGAACTTTGGTCTTTGATTTTGGTGCTTTAATTGTTTCTGCAAGTGCTCAAAATTTTTGGTCTTTGATTTTCCATTTGTCTTGGTTGTATTTTTGTGTTATGAAGGAGTTCCGTAATAATATGGATGTTAAGTTTGAGCGAATGGTAACCAAACGCAAAGTTGATGAATACTCGACCACGGTGACCTTTAAGCCTGACTTAACCAAGTTTGAAATGACCTGTCTTGAAAAGGATGTTGTAGCTTTGATGAAAAAGCGTGTGCTGGACATGGCAGGGTGCCTTGGTGTTACGGTTGAACTAAACAGCGAAGTGATTCCATTCAAGTCTTTCAAAGGTTATGCTGATTTCTTCTTGAATTGTGCTCAGGAGTCCAAACCCTTTTCCCTGCCAAGGTTTGTTGCTATACAGATATGTAGTTGAGAACTCAATCTGCGTGTGGGTTGGTGTATTTTCCTTTGTTTTTATCTAACATGATTTGGTTGCTTTTATTAGGACTCATGCCAAACTAAGTGATAGCTTGGAGATTTGCCTGAGTCTAAGTGACGGGAAGTTTCAACAGGTGACTAGTGAACGTCTAAAGTATAGTGTAACTTGCAGGTTCATTGATGTTAATTTCTTGTCTTACACAACTTATTTTTTATTTTTTTTTACCAGGTCAGCTTTGTTAACTCCATTGCTACAATTAAGGGTGGGACTCATGTTGATTACATCACCAAGCAAATTACTACCTATATAAAGAAGGAAGTATTGAAGAAGAAGGAGCATGTCAATGTGAATGCTGACACTGTGAAGAATCATTTGTGGGTTTTTGTCAATGCTCGGATTGACAACCCTGCCTTTCATTCTCAAACCAAAGAGATGTTAACCACTAAACCAGCTAGATTGGGTTTAAATTCAAGGCTGACTCATGGTTAGTAATTCTTCATTTGTTGGTTGTTTTTGCAATGCTATCAAATTAACATGAAATGGTGTTTTACTCAAATATTTTATATTTTTGAAGATCAAAAGTCTGAAATTGCGAAAACCCTCCTACCACGGATATGGATACGTTTGAAACAAACGCATGTGGAAACGCATGTGGAAGCCATGTTGGCTGGCGGACCCAAGCGTGGAAAATGTACCTTGATTTTGACACATGGAGATTCTGCCTTTGCTGTAAGTTGTTGTCTATTGTCTATATACAAAAACTAATTTTAAAAAGTATATATTTCAAATTTTGGTATGAATATTTTTCATTTAAGCACAAGCGGTTGAAGCTTATGGTCATTTATTTAAATTCAATTAAAAAAAAAAAAAAAAAACTTGAACTTAATGACTACTTTTTGGTTTGAAGATGGCCGGGGACTCTGCTGTGGTGGATCCAGACCTCTATGGTGTGTTTCCATTGAGCAGCAAATTGCTCAATGTGAGGGACAGTAGAAAGCTATTAAAAAAGAAAGAAATTCAGATTCTGATGACCGTTCTTGGACTTGTGCGAAACAAGAAATACAGTGATGCAGAATCTTTGAGATATGGCCGGTTGATGATTATGGCCAATCAGGCGAGTAACTTAAAGATCATAGTTTGTTTATTAATGCCTTGACTTTTATGTTTCTATGTATGAGGCTTGATTATGTTCTACGTTTGATTTTCTTATTCCCCGCGATTATAATAGTTCAAATTTATGTGTGATTTAGGATGAAGATGGCGCTCACTTAAAAGGACTATTGATAAACTTCATTTATTCATTCTGGCCATCACTACTTAAAGTTTCAAAATTCATGTCTGTGTTTACCATTCCCATTATAAAGGTTAGCATGTATAATTGATAATGAAAACACTCTGTACACATTCTTGAGTAAATAATCTATTTTTTTTTTCTTTCTTTTCTTTTTGTTTTACGAGATCATTTATCTTTCTCTGCAGGCTTCTAATTCAAAGAAGGGGAAGAAGTTATCATTTCATTCTATGCAGCAATATGAAGACTGGAAAAAAGAATTGGGTAAAACTGCAAATGATTGGGAGATAAAGTACTGTAAGGTTTGTTGTTGGAAAACCTCCATATTTTTTATATTTATGACTGTTAGTGTGTCTCAAAGAGGTTGGTATCATTTTGTGTTTAAGATTGATTCCAGCCTCTTTTAGAGCCCCTTCTTCATCAGAAGGGATACTATCTAATTCCATTTTGGTGTGGCATTGGTGTATTTTTTCTGCATATCACTCATGGTCTGCTCAGCATCTCCCTTTTGCCTACACTATATTGGCTTGCTTGTTGGTATTTTAAAGCTGTGGCTATGCAGCATCATATAAGTCTTGGCTTTGAGTTATTTTTAATAAATTTGCTTTTTTTTTTTTTTTTTTTGAGGGAACAAAAAAAAAAAGAAACGTTGGATATGTATTCATAAATCATTTTGAAATAAATTGATTAGATTTTATGGATATTTGTTATTTTTATATATATTTAAATATTACAAGTGCCTATTATAAAAAAGTTAAAACGCCTTATTGAAATAATTAATAATACATGAAAAGTAAATGGGTCTTTTATGAGTTTGACTTCACTCCTTTTATTTTGCTCCATTTAGTGAGATCCACTAAATGAAAAGAGTCCCACTAATCTATCTCTTGTGTCTATATATATATATATATATATATATATATATATATATCTATTAAATGGAGCAAAGCAAGACTCGCATTTTATCAAACACAGGTGTGTAATAAACAAAGACGAACATGTTTGCACTTTATTGCCTATAGAAAAGGTTGAAGGGAAATGTCGGTTTTCATCCTTTTGGATTTGGCTTGGGTTAGGCCATGGCTGCACAACCTGCCCACCCATGAGCTGTAGGAAATAGGCGATTCCATCAATGTCAACACAATAAACGATTTTTGCGGTGAACAGAATCGTTCAAACCAAAATACTGTGTTCCCCTAAACCAATTACTTTTTGTGTTCCTAATTCTTTCATTCAGTCTTTGCTTATTTCAAATTTTTGGTGTTTGTACAGGGCTTGACTGCTGCGCAGGATGTGAGAGAGTACTTTCAAGATCTTGATGAGCACAGGGCATATTTTGTTTGGGATGATGATGATGATGAACAAGATGGAACTTCCACTTCAATTGAGCTGGCATTCAGTAAAAAAGCTGAGGATTGGAAGGCTTGGATTTGTAACTCTCAGGTTTGATGTTTACCAATACATCAATTTTCTAACACAAGCTTACTCTTCTAGGGTGTATAGTTAACATATAGTTTTCCATTATCAGATGATGCAGCCTGGCACTTGTAATTATGAAAGCAAAAGTATAAAGTACAGGGATTTTGTTAACAAAGAACTTCTATTCTTCTCAATGAAAAATCTCCAAAGGTCCATTCCGTCTATGGTAGATGGCCTTACACTTGGTCAAAGGAAGACTCTTTTCTGCTCCTTTAAGATGAATTTGACCAAACAAACAGAAGTTTCCCTATTAACTGCTTATGTGACTGAACATTCTTATTGTCACTATGGTGAACAAAGTATTGCTAGGACAATTATTGGAATGGCACAGGATTTTGTGGGTAGCAACAACATCAATCTTCTCATACCTTATGGTCAATTTGGCACTCGTGACCTGGTGAGATGAACCGGCATAATTTTTTTTTATTGCACTATTTCTCATTTTCTTTCTTGAACTTATATTCAGTGGATAAGTTGCTTGTTCCAGGGTGGTAAAGACCATGCAAGTTCCCAAAAGTTATACATTAAGCTAAATTGCGTTACTCGTCTCCTCTTCCCTGCGGATGATGATAAGCTTCTTGAATACTTGAATGAGGATGGGAGGTCCATTGAACCAAACTGGTATTTTGTTTCTCCTTTCTTTGTAATGGCTATTTTGGTTGTGATTATTAATAAGTAACAACTAAGGAACCTCATCAAAGTTGAACTGATTCAAATTCTGCTTGTCACCACACAGGTACATACCAATCATTCCTCTCGTGCTTGTTAATGGTTGCCATGCCATGGGGACATGTTTTAGTTCTGATATTCCCAAATATCATCCATGTGAAATTATTGAGAATGTAAGACGTTTCTTGAAGGAAGAGGAAATGGTGCCAATGAAACCATGGTACAGAGGGTTCAGAGGAACCATTAAGGAAAGTGCCAAGGGCTATACAGTCAATGGTTTAGTGGAGAGAATAAATGAACAAACTGTCAGAATCGAAGAGCTTCCTATTCGAAAGTGGACTCAAGATTATAAGAAGTTCCTTGCCAAAAAAACTGCTCAGGCGCACATTGAGGTGACGTGACCTATACTTTTACTTACCATATACACCATAGGTAAATCTGTACCTTTTTCATATGTAAATTTTCTTTGTTGCAGGGTTTTAGGCAAATAGGGGTTTATGAAATGGTAGACTTTAAAGTCAAGATGAAGCCAGAAAAAACAGCTACAACAGAGGACGAAGATAAAGTCAAGATGAAGCCAGAAAAAACAGCTACAACAGAGGACGAAGATAAAGAAGAATTATGCAGGAAGTTTAACCTGTCGTGCACTATTAGCACAAGCAACATGTATCTTTTTGATGCAGAGGGAAAAATTAAGAAATATAACTCCCCAGAACAAAGTATACCCTTCTTTATGTATAATTACTTTGAATCGCATTATCATGTAATGTTTTTCATACTACTCACTTTTCTGTGTCATTTCTTATGCAGTTCTTGAAGAGTTCTGTAGACTTCGGCTGAAGTATTATGCGAAGAGAAAGGTGAATTATTGTTGCTAACAATTACATAGATCTTTCTCTATATCATGTACCTATCTATTAATATATATTAACTGAAATGCAAGTTGTGCTTGCCCGCAGGAATATCTAGAGAAGAAGAACTCTAAACAACTTTTGCGGAGTTTAAGAATCAAACGAAATTTTATAACCGATGTTGTGAATGCGTCATGCCCGATCTACCGAAGAGCTGAATTTTTGATTGAGATTCTGAAGAAAGGTAACTCTGCAGAACCACAAGTTGCAGGTGCAAATGATTACAGTTCAAAAGAGCAGGAAGCTGATGAGCAGAAAACTGTAGCGACATTGGGTGACTATGAGTATCTTTCATCCTTGCCTCCTGAAAATTTCACCAAGGAAAGCCTTGTGAAGCTGGAAGCTGAACTTGATGAAAAGGAAAAGGAGACTTTGAAGGATACCTCACCAGAGTCAATGTGGTTAAACGATCTCATGTTGTTTGAAAAGGAATTTGAGGTAAGAGAGACAATTACTTATTTTGCTTAG

Protein sequence

>MS.gene93340.t1

MGLRRHHHHHGETVRTRYFHRFNKKKTEKQWVYEDGKIVHRKISYVPDLYKIFDIILVHAADKKRRDPTMNRLRVEIDTKMNEISVCYNGAPLIGDETYDDVINIFHLTNSYSTCFWVEFADELGTTREEFRNNMDVKFERMVTKRKVDEYSTTVTFKPDLTKFEMTCLEKDVVALMKKRVLDMAGCLGVTVELNSEVIPFKSFKGYADFFLNCAQESKPFSLPRTHAKLSDSLEICLSLSDGKFQQVSFVNSIATIKGGTHVDYITKQITTYIKKEVLKKKEHVNVNADTVKNHLWVFVNARIDNPAFHSQTKEMLTTKPARLGLNSRLTHDQKSEIAKTLLPRIWIRLKQTHVETHVEAMLAGGPKRGKCTLILTHGDSAFAMAGDSAVVDPDLYGVFPLSSKLLNVRDSRKLLKKKEIQILMTVLGLVRNKKYSDAESLRYGRLMIMANQDEDGAHLKGLLINFIYSFWPSLLKVSKFMSVFTIPIIKASNSKKGKKLSFHSMQQYEDWKKELGKTANDWEIKYCKGLTAAQDVREYFQDLDEHRAYFVWDDDDDEQDGTSTSIELAFSKKAEDWKAWICNSQMMQPGTCNYESKSIKYRDFVNKELLFFSMKNLQRSIPSMVDGLTLGQRKTLFCSFKMNLTKQTEVSLLTAYVTEHSYCHYGEQSIARTIIGMAQDFVGSNNINLLIPYGQFGTRDLGGKDHASSQKLYIKLNCVTRLLFPADDDKLLEYLNEDGRSIEPNWYIPIIPLVLVNGCHAMGTCFSSDIPKYHPCEIIENVRRFLKEEEMVPMKPWYRGFRGTIKESAKGYTVNGLVERINEQTVRIEELPIRKWTQDYKKFLAKKTAQAHIEGFRQIGVYEMVDFKVKMKPEKTATTEDEDKVKMKPEKTATTEDEDKEELCRKFNLSCTISTSNMYLFDAEGKIKKYNSPEQILEEFCRLRLKYYAKRKEYLEKKNSKQLLRSLRIKRNFITDVVNASCPIYRRAEFLIEILKKGNSAEPQVAGANDYSSKEQEADEQKTVATLGDYEYLSSLPPENFTKESLVKLEAELDEKEKETLKDTSPESMWLNDLMLFEKEFEVRETITYFA