AlfalfaGEDB | MS.gene93914

M. sativa cultivar XinJiangDaYe / MS.gene93914

KEGG: K15865
GO: GO:0003674 GO:0003824 GO:0005488 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016740 GO:0016782 GO:0034470 GO:0034641 GO:0034660 GO:0035596 GO:0035598 GO:0035600 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0048037 GO:0050497 GO:0051536 GO:0051539 GO:0051540 GO:0071704 GO:0090304 GO:1901360
PFAM: PF04055.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93914.t1	XP_013455261.1	99	512	5	0	1	512	107	618	4.40E-290	1006.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93914.t1	Q291H5	55.8	373	156	2	5	370	130	500	1.7e-117	424.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93914.t1	A0A072UHZ4	99.0	512	5	0	1	512	107	618	3.2e-290	1006.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049190	MS.gene93914	0.813255	2.81E-51	-1.69E-46
MS.gene049255	MS.gene93914	0.802506	5.43E-49	-1.69E-46
MS.gene049341	MS.gene93914	0.834158	3.52E-56	-1.69E-46
MS.gene049824	MS.gene93914	0.837474	5.09E-57	-1.69E-46
MS.gene049825	MS.gene93914	0.803486	3.41E-49	-1.69E-46
MS.gene049850	MS.gene93914	0.804937	1.70E-49	-1.69E-46
MS.gene050277	MS.gene93914	0.803718	3.05E-49	-1.69E-46
MS.gene050689	MS.gene93914	0.811029	8.59E-51	-1.69E-46
MS.gene050807	MS.gene93914	0.811703	6.13E-51	-1.69E-46
MS.gene050838	MS.gene93914	0.802531	5.37E-49	-1.69E-46

Showing 1 to 10 of 35 entries

Previous1 2 3 4Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene36347	MS.gene93914	PPI
MS.gene85145	MS.gene93914	PPI
MS.gene93914	MS.gene025347	PPI
MS.gene93914	MS.gene36348	PPI
MS.gene93914	MS.gene062116	PPI
MS.gene93914	MS.gene85342	PPI
MS.gene93914	MS.gene76530	PPI
MS.gene93914	MS.gene069865	PPI
MS.gene93914	MS.gene070139	PPI
MS.gene93914	MS.gene85146	PPI

Showing 1 to 10 of 10 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93914.t1	MTR_4g033210	99.023	512	5	0	1	512	107	618	0.0	1046
MS.gene93914.t1	MTR_5g021230	24.939	413	240	12	15	369	186	586	1.29e-26	114

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93914.t1	AT1G72090	67.647	510	135	5	1	509	119	599	0.0	701
MS.gene93914.t1	AT4G36390	24.823	423	246	14	7	369	207	617	2.76e-25	110

Showing 1 to 2 of 2 entries

Previous1Next

Find 103 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAATAGGGACACCTG+CGG	0.776532	4.3:-66916562	MS.gene93914:intron
AAACATGCTCGAGGTCACCT+AGG	0.587931	4.3:-66918910	MS.gene93914:CDS
AAAGGAAGAATCTGCACAAA+AGG	0.397088	4.3:-66915368	MS.gene93914:CDS
AAAGTGGGACTTTGTTGATA+AGG	0.441838	4.3:-66915292	MS.gene93914:CDS
AAATCCACATATTATATCAG+TGG	0.624202	4.3:+66918047	None:intergenic
AACATGCTCGAGGTCACCTA+GGG	0.613729	4.3:-66918909	MS.gene93914:CDS
AAGAAAGGAGCATGAGAAAG+TGG	0.418448	4.3:-66915308	MS.gene93914:CDS
AAGCGCTGGCAATGTCTTAC+GGG	0.416449	4.3:+66919143	None:intergenic
AAGGAAGAATCTGCACAAAA+GGG	0.564610	4.3:-66915367	MS.gene93914:CDS
AAGGCAAAGTGGAAAGAATT+TGG	0.247160	4.3:-66916446	MS.gene93914:CDS

Showing 1 to 10 of 103 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGCTACTATGATAGTTTAG+AGG	-	chr4.3:66917048-66917067	MS.gene93914:intron	30.0%
AATGAATCGAGAATATACTG+TGG	-	chr4.3:66916406-66916425	MS.gene93914:intron	30.0%
ATGAATCGAGAATATACTGT+GGG	-	chr4.3:66916407-66916426	MS.gene93914:intron	30.0%
ATGGATACCATCATAACAAA+AGG	-	chr4.3:66915206-66915225	MS.gene93914:CDS	30.0%
ATGTATATGCACTAGTCAAA+AGG	+	chr4.3:66916016-66916035	None:intergenic	30.0%
ATTACTGATATTGCAACTGA+TGG	-	chr4.3:66918110-66918129	MS.gene93914:CDS	30.0%
ATTGCCACTGATATAATATG+TGG	-	chr4.3:66916482-66916501	MS.gene93914:CDS	30.0%
CAAAGACATTTGTCAATTCA+CGG	+	chr4.3:66918040-66918059	None:intergenic	30.0%
CAAGTTTGAATTCATACCTT+TGG	+	chr4.3:66915422-66915441	None:intergenic	30.0%
CCACTTAGTAACTATTCAAA+AGG	+	chr4.3:66917344-66917363	None:intergenic	30.0%

Showing 1 to 10 of 280 entries

Previous1 2 3 4 5…28Next

Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	66915206	66919349	66915206	ID=MS.gene93914
chr4.3	mRNA	66915206	66919349	66915206	ID=MS.gene93914.t1;Parent=MS.gene93914
chr4.3	exon	66919131	66919349	66919131	ID=MS.gene93914.t1.exon1;Parent=MS.gene93914.t1
chr4.3	CDS	66919131	66919349	66919131	ID=cds.MS.gene93914.t1;Parent=MS.gene93914.t1
chr4.3	exon	66918888	66919007	66918888	ID=MS.gene93914.t1.exon2;Parent=MS.gene93914.t1
chr4.3	CDS	66918888	66919007	66918888	ID=cds.MS.gene93914.t1;Parent=MS.gene93914.t1
chr4.3	exon	66918623	66918698	66918623	ID=MS.gene93914.t1.exon3;Parent=MS.gene93914.t1
chr4.3	CDS	66918623	66918698	66918623	ID=cds.MS.gene93914.t1;Parent=MS.gene93914.t1
chr4.3	exon	66918228	66918436	66918228	ID=MS.gene93914.t1.exon4;Parent=MS.gene93914.t1
chr4.3	CDS	66918228	66918436	66918228	ID=cds.MS.gene93914.t1;Parent=MS.gene93914.t1
chr4.3	exon	66918043	66918151	66918043	ID=MS.gene93914.t1.exon5;Parent=MS.gene93914.t1
chr4.3	CDS	66918043	66918151	66918043	ID=cds.MS.gene93914.t1;Parent=MS.gene93914.t1
chr4.3	exon	66917580	66917672	66917580	ID=MS.gene93914.t1.exon6;Parent=MS.gene93914.t1
chr4.3	CDS	66917580	66917672	66917580	ID=cds.MS.gene93914.t1;Parent=MS.gene93914.t1
chr4.3	exon	66916413	66916573	66916413	ID=MS.gene93914.t1.exon7;Parent=MS.gene93914.t1
chr4.3	CDS	66916413	66916573	66916413	ID=cds.MS.gene93914.t1;Parent=MS.gene93914.t1
chr4.3	exon	66915206	66915757	66915206	ID=MS.gene93914.t1.exon8;Parent=MS.gene93914.t1
chr4.3	CDS	66915206	66915757	66915206	ID=cds.MS.gene93914.t1;Parent=MS.gene93914.t1

Gene Sequence

>MS.gene93914

ATGGATACCATCATAACAAAAGGAAAATCTTCAAATAAACCACTAGTTGTTGCTGGCTGTGTCCCTCAAGGAAGTCGAGATGTGAAAGAGCTGGAAGGGATCAGCATTGTAGGAGTCCAGCAAATTGATCGCGTTGTTGAAGTTGTAGAGGAGACTTTAAAAGGTCACGAAGTGAGGCTTTTGACCCGTAAGACATTGCCAGCGCTTGACCTTCCAAAGGTATGAATTCAAACTTGTTATAATTCCTGTTCATTTTGTATGGAAAATATCTTTTCTGCCATATGTATTATGTTATTTAATTTAATTTGGGTGTTGTATTATGCCTTTCAACCTTTGTAACAGGTGAGAAAGAACAAATTTGTTGAGATTCTTCCAATTAATGTTGGTTGTTTAGGTGCTTGCACTTATTGCAAGACAAAACATGCTCGAGGTCACCTAGGGAGTTACACAATAGATAGCCTTGTAAGTACTTTAGTAGTGAGCTATGTTTTATACTCTCACTCACTCTCCCTCTTGCACAAATTTGCGCACACAGTTTCATTTTCCTCACATTTCACACACATGCGGGCACTATTTTATTTTCCTCACATATCACACACATGTGAACACTATTTCATTTTCCTCACATCTATTAATTCATCACTAATGCAGGTTGGGCGTGTAAAATCTGTGGTATCTGATGGAGTTAAAGAAATATGGCTGAGCAGTGAAGATACCGGAGCATATGGTAATTTCTAATATTGGTCAGATTCTTTTAATTACTTTCACTTATTTAAGACATTTGTAGATCTGATTTGAAGAAATTTCCCTTTTGACTAGTGCATATACATCCAAGCAATTAGGTTATGCAAAATGTTTTGATGTTGAGTTTAGGTTTTATATCAATGGTTTCTTAGATCATGATGTTTTACAGGTCGTGACATTGGTGTCAATCTTCCAACTTTATTGAATGCCTTAGTAGCAGAATTACCAGCTGATGCAAGCACTATGCTGCGTATTGGAATGACCAATCCACCTTTTATCCTTGAGCACTTGAAAGAGATAGCAGAGGTTTTACGGCATCCATGTGTTTACTCCTTTTTGCATGTGCCAGTTCAGTCTGGAAGTGATGCTATTTTGAGTGTAAGTCAGAAAAACCCTTACAATACTATGGATGGTGATATTCTAAATAGTATATTGACCAATCTGAATATCCCAGGCAATGAATCGAGAATATACTGTGGGTGAGTTCAGAACTGTTGTAGATACCTTAACTGAGCTTGTGCCGGGGATGCAGATTGCCACTGATATAATATGTGGATTTCCAGGTTAGTGCATAGTCTTAATTACATGTTTTACTAACCTTCTTAATTCTATGTGTAACAAATGGCTAGAGTACAATAACTCTTGAATTTGTGAATAAGAGGAGTGATATGTATGAAAACATGCAAATAGTTGTTCTAAGCTTGAGACTCGTATACACCAATATAATAATAAATGACAAGAAAACTGATGAAATCTTATAATTGGGGTGTCAGCGTGACTTGTTGTCAACAGAAATTGTAAGACAAGATTCTCTTAATCTTAGAGATCATACATCACATGATTAAAATGATCTGGAATTGATATAGATAATCTAGATGGTATAAAATACTAGTGCATGAATCATACTAACAGTTATTTCTTGGCCTTTTTCAGGTGAAACCGATGAAGATTTTGAGCAAACTGTCAACCTCATAAAAGAATACAAGTTCTCTCAAGTTCATATTTCACAATTTTATCCTCGACCAGGTGTGTGATCTGGCACATCATCATATTGAAAATCATAACTTCATTTTTTAGGATGAAACTGATGCAGGTGTCAAGCTACTATGATAGTTTAGAGGCAGGGTATCTTGGCTCCACTAGGTTCTGTGCATGAACAGTTCTATTCTTTCTTTTGTTTTTTGTTTTTTTTTTTGGAAGGAAGATTTAGGTTGTCGCCATTTTTTTTCTTGCAATAAAAGGGTGCTCCAAATAAATTTAAGGCCACCGACATGACTTAATATTAGGCAGTGATGATAAGTTCTTCTACTCTACTTTCAGTTCCACTTTTTCTAGGTGCTATTGTATGCCTACTCACTTGTTATAAAGGGCTGCATGATGTCTCCATCCTTCCTTTTGAATAGTTACTAAGTGGTGCTCATGTGCTATGTGAATTATTGTTTCTTGCCTGACTAAAAAATACTATCATAAACATTTTTCTAATTTTTGGCAATGAAAAAAATAATGTAGAGATCCTTTTTTTGTTAATGATACAACATGCACGATCTGCCTTTTTTTCCTCCCCTAATCTCGCTATCTTAGGTGATTTTGATTGATTTTGTTTCTCGTAATCATCTGAATTTAATTTGCTGTTCATATGCTAAGGTAAATTATATTTTCTGTTTGTTCAAATAATTGCCATCGGGCCAAAGGCCCGATAGAATTTGGATGGTCTGGATAAATAGTTAACAGTTTACAGTTATTCAATAAACTAAGATAGAGAGCTTAAATATGTTCTTATTCGTAAGCTATTTGAGGAAGCTTGTTGAAATATGTTAAAAACAATTTATTGTATCATAAACTGTTTTTGTAAGTGTACTCAAACACTGGTTAGTTTAAATGCGTATGTCATGAGATAAGTTCAAACAAGCTTTAATTAAGCTCTTCTAGATTCCCCCTTTGTGTAAGATGCTTATGCCAGAGGTTATCTTGCATTCATTTTGAAATATTTTCCTTATCTTCAAACTGACAATATTAATGAAAAAATGAATAGGGACACCTGCGGCAAGAATGAAAAAGGTTCCAAGTAATGTGGTGAAGAGAAGAAGCCGTGAATTGACAAATGTCTTTGAATCATTCACGCCATACTCTGGGATGGAAGGCAAAGTGGAAAGAATTTGGATTACTGATATTGCAACTGATGGAGTTCACTTGGTAAGGCAGTGTAGTAGATATTGAATCATGATTTGGCTTTTATTGCTTTTAAATATATTCCATTAATATTAGGATTTGTGGCAACCGTGATTATTTTGTTGAAACCCTTTAATTGTCATGAACCTGCCTAAGTGCCAGGAAAAAGTTTATTGTAAGCAGAGACAGATTTTAGTGTAACATTTTTAACGTGTAATATTAAAAACCAGTTATTTGTTTCTAAACTTTTACAGTCCCGATAGTCGCACAATGTTTTTCGAAATACAGTATTTGAGACTTTAATTGGTTGGAGATGTTCTCCAATAGCATAGCCATGGTCTGGAGGGTGCTGTCTAGGATGTGGGAGATTAAATCTCTCACAAGATTATCATGCTTTTTTACCGTTGGATGTATGAACAAAATATCTACGGTCAGATTTTGACGCGCAGGTTAAGGTTAATATTCACTACCTCCCATGGTCTCAGGGCCTCTTGTTGAGAAAAAAGAAAGAGAGGTTGTGATGGGAGGAATATGTTTTTTTCCCTACACCACCCTCTATTTGGTGAGTGACTGTGCATGCATGTAATGATATACCTACTCTGAACATGTGACTTCTGGATAATATAATGCATTCATTTATGGTATTTTTCTCTAATTAATTTTTTCTTCAATGCTGAAGGTTGGTCATACAAAGGGATATATACAAGTTCTCGTAATTGCTCCAGATGATATGCTTGGAAGTTCAGCTCTGGCCAAGATAACATCTGTGGGAAGGTGGTCAGTTTTTGGGGAAGTAATTGAGACAATCAATCATGCAAGTGACAATAAAGCTTTGAACAAACAGGTTCCTACTCAGGATATGTCTTCTCTCTGTTGTAACCAAACCAAGACTTGTGAAATCTCAGAAGAGCCAGAATCTTGTGCTTGTGGGAATGTTGATAGCTGCTGCAGTCAGAGTACTCTTGAGAAGACCGACAATTCAAGGGACACTGTAGTGCTGCCACAGAATCAAAATAACAAAAATTTGTTTGGATGGATACTGAGGAAAAGGAAGAATCTGCACAAAAGGGTAGAAAGTGAACTTGCCTCAGGATCTGATCTAAAGCAAGAAAGGAGCATGAGAAAGTGGGACTTTGTTGATAAGGCTCTTTTGGGTGGAATCTCTATCAGCATCTTGACAATTATTGCTTTATTAGTTTGTCTTAGGTTTAGTGTTCTTTGGTCCCAGTAA

Protein sequence

>MS.gene93914.t1

MDTIITKGKSSNKPLVVAGCVPQGSRDVKELEGISIVGVQQIDRVVEVVEETLKGHEVRLLTRKTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVKSVVSDGVKEIWLSSEDTGAYGRDIGVNLPTLLNALVAELPADASTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAILSAMNREYTVGEFRTVVDTLTELVPGMQIATDIICGFPGETDEDFEQTVNLIKEYKFSQVHISQFYPRPGTPAARMKKVPSNVVKRRSRELTNVFESFTPYSGMEGKVERIWITDIATDGVHLVGHTKGYIQVLVIAPDDMLGSSALAKITSVGRWSVFGEVIETINHASDNKALNKQVPTQDMSSLCCNQTKTCEISEEPESCACGNVDSCCSQSTLEKTDNSRDTVVLPQNQNNKNLFGWILRKRKNLHKRVESELASGSDLKQERSMRKWDFVDKALLGGISISILTIIALLVCLRFSVLWSQ