Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95157.t1 | XP_003610500.1 | 97.2 | 215 | 6 | 0 | 26 | 240 | 1 | 215 | 2.20E-119 | 438.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95157.t1 | Q8GYK2 | 75.5 | 220 | 54 | 0 | 21 | 240 | 40 | 259 | 4.4e-100 | 365.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95157.t1 | G7JKH0 | 97.2 | 215 | 6 | 0 | 26 | 240 | 1 | 215 | 1.6e-119 | 438.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene95157 | -0.86255 | 4.68E-64 | -1.69E-46 |
| MS.gene049419 | MS.gene95157 | 0.818556 | 1.84E-52 | -1.69E-46 |
| MS.gene049499 | MS.gene95157 | -0.814551 | 1.45E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene95157 | -0.816856 | 4.46E-52 | -1.69E-46 |
| MS.gene050105 | MS.gene95157 | -0.831864 | 1.31E-55 | -1.69E-46 |
| MS.gene050646 | MS.gene95157 | -0.810219 | 1.29E-50 | -1.69E-46 |
| MS.gene050654 | MS.gene95157 | -0.838413 | 2.92E-57 | -1.69E-46 |
| MS.gene051122 | MS.gene95157 | -0.809152 | 2.18E-50 | -1.69E-46 |
| MS.gene052016 | MS.gene95157 | -0.80736 | 5.25E-50 | -1.69E-46 |
| MS.gene05216 | MS.gene95157 | -0.858048 | 1.08E-62 | -1.69E-46 |
| MS.gene052674 | MS.gene95157 | -0.812034 | 5.19E-51 | -1.69E-46 |
| MS.gene052675 | MS.gene95157 | -0.814103 | 1.83E-51 | -1.69E-46 |
| MS.gene052677 | MS.gene95157 | -0.819542 | 1.10E-52 | -1.69E-46 |
| MS.gene05308 | MS.gene95157 | -0.82115 | 4.71E-53 | -1.69E-46 |
| MS.gene053620 | MS.gene95157 | -0.808011 | 3.82E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene95157 | -0.845623 | 3.62E-59 | -1.69E-46 |
| MS.gene054892 | MS.gene95157 | -0.830282 | 3.21E-55 | -1.69E-46 |
| MS.gene054893 | MS.gene95157 | -0.836944 | 6.95E-57 | -1.69E-46 |
| MS.gene056045 | MS.gene95157 | -0.846282 | 2.40E-59 | -1.69E-46 |
| MS.gene056973 | MS.gene95157 | -0.844171 | 8.92E-59 | -1.69E-46 |
| MS.gene057155 | MS.gene95157 | -0.818594 | 1.81E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene95157 | -0.806732 | 7.13E-50 | -1.69E-46 |
| MS.gene057919 | MS.gene95157 | -0.816192 | 6.28E-52 | -1.69E-46 |
| MS.gene058081 | MS.gene95157 | -0.81526 | 1.01E-51 | -1.69E-46 |
| MS.gene058223 | MS.gene95157 | 0.85754 | 1.52E-62 | -1.69E-46 |
| MS.gene058279 | MS.gene95157 | -0.829506 | 4.95E-55 | -1.69E-46 |
| MS.gene058429 | MS.gene95157 | -0.809301 | 2.02E-50 | -1.69E-46 |
| MS.gene058708 | MS.gene95157 | 0.800433 | 1.44E-48 | -1.69E-46 |
| MS.gene059439 | MS.gene95157 | -0.805715 | 1.17E-49 | -1.69E-46 |
| MS.gene060520 | MS.gene95157 | -0.800471 | 1.42E-48 | -1.69E-46 |
| MS.gene060527 | MS.gene95157 | -0.81361 | 2.35E-51 | -1.69E-46 |
| MS.gene060850 | MS.gene95157 | -0.823131 | 1.63E-53 | -1.69E-46 |
| MS.gene060851 | MS.gene95157 | -0.841682 | 4.10E-58 | -1.69E-46 |
| MS.gene060852 | MS.gene95157 | -0.836977 | 6.82E-57 | -1.69E-46 |
| MS.gene060933 | MS.gene95157 | -0.814156 | 1.78E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTGTTAGTTGCGAGTTTA+AGG | 0.172548 | 8.4:+1456520 | MS.gene95157:CDS |
| CTGTTGTACCCTAAAACTTT+AGG | 0.267673 | 8.4:+1455736 | MS.gene95157:CDS |
| CCACAGATAAATATATTGTT+AGG | 0.286098 | 8.4:-1455594 | None:intergenic |
| CAGCCCATGGGACCATAGTA+TGG | 0.302977 | 8.4:-1456438 | None:intergenic |
| ATGGTTCTGTAATGCCTTCA+TGG | 0.330844 | 8.4:+1454553 | MS.gene95157:CDS |
| AATAATATGCATACAGTTGC+AGG | 0.332819 | 8.4:-1453618 | None:intergenic |
| GTGATTGTTAACAGTAGAAT+TGG | 0.335173 | 8.4:-1453362 | None:intergenic |
| AGCAAACTATTCTCGTCGTT+TGG | 0.346185 | 8.4:-1455513 | None:intergenic |
| TCCTTCTGCTCCTCACGCTC+CGG | 0.418740 | 8.4:+1453592 | MS.gene95157:CDS |
| GTTCTGTGGTTACACGGTCT+TGG | 0.419005 | 8.4:+1453494 | MS.gene95157:CDS |
| TATTGTTTCAGTGACGTGTT+TGG | 0.420938 | 8.4:+1453300 | None:intergenic |
| ATAAGTACCCGCTTAGCTTC+AGG | 0.433033 | 8.4:-1455820 | None:intergenic |
| TCTGTAACAGATGAATTAAA+CGG | 0.437889 | 8.4:-1455787 | None:intergenic |
| TGGTATTATTAGGCTTATCC+TGG | 0.441301 | 8.4:+1456619 | MS.gene95157:intron |
| GTCTTGATGGGTTCATTGGC+AGG | 0.441657 | 8.4:-1453527 | None:intergenic |
| TAATGTCTTGATGGGTTCAT+TGG | 0.446375 | 8.4:-1453531 | None:intergenic |
| CTCCTCGTTGTTTATTGAGT+GGG | 0.455255 | 8.4:-1456647 | None:intergenic |
| AGAAGTGAATAATGTCTTGA+TGG | 0.461638 | 8.4:-1453540 | None:intergenic |
| TTTGGAATTCCGCCACGGCT+TGG | 0.463686 | 8.4:+1453318 | MS.gene95157:CDS |
| CACAGATAAATATATTGTTA+GGG | 0.468738 | 8.4:-1455593 | None:intergenic |
| AGCAGAAGGAAAAGACCATT+TGG | 0.468754 | 8.4:-1453579 | None:intergenic |
| AGCTAAAGCATCTTGAGTCT+TGG | 0.470537 | 8.4:+1456668 | MS.gene95157:CDS |
| CATACTATGGTCCCATGGGC+TGG | 0.472438 | 8.4:+1456439 | MS.gene95157:CDS |
| TTATACAGACACCCATACTA+TGG | 0.480186 | 8.4:+1456426 | MS.gene95157:intron |
| CATTTGGTACTTCTGAATTG+AGG | 0.492380 | 8.4:-1453563 | None:intergenic |
| TGCATACAGTTGCAGGTGAC+CGG | 0.492555 | 8.4:-1453611 | None:intergenic |
| CTCAATTCAGAAGTACCAAA+TGG | 0.494388 | 8.4:+1453564 | MS.gene95157:CDS |
| ACAAAACTTCGAGCCGCCAT+TGG | 0.521401 | 8.4:-1453473 | None:intergenic |
| TTTATTGAGTGGGCAAGACC+AGG | 0.534942 | 8.4:-1456637 | None:intergenic |
| GCTCCTCGTTGTTTATTGAG+TGG | 0.540846 | 8.4:-1456648 | None:intergenic |
| TACCCTAAAACTTTAGGTGG+AGG | 0.541302 | 8.4:+1455742 | MS.gene95157:CDS |
| CCTAACAATATATTTATCTG+TGG | 0.541354 | 8.4:+1455594 | MS.gene95157:CDS |
| AATTACACCTGAAGCTAAGC+GGG | 0.545193 | 8.4:+1455813 | MS.gene95157:CDS |
| GTTTGTTGCGTTCCAAGCCG+TGG | 0.550410 | 8.4:-1453330 | None:intergenic |
| TTACACGGTCTTGGTGACTC+TGG | 0.551312 | 8.4:+1453503 | MS.gene95157:CDS |
| TTTATCTGTGGGTTCAGTCA+AGG | 0.556548 | 8.4:+1455606 | MS.gene95157:CDS |
| ACCGGAGCGTGAGGAGCAGA+AGG | 0.561036 | 8.4:-1453593 | None:intergenic |
| TTGCAGGTGACCGGAGCGTG+AGG | 0.561766 | 8.4:-1453602 | None:intergenic |
| GAAGTGAATAATGTCTTGAT+GGG | 0.571272 | 8.4:-1453539 | None:intergenic |
| CACCCATACTATGGTCCCAT+GGG | 0.572624 | 8.4:+1456435 | MS.gene95157:CDS |
| TCATGAATGTCAAACCATGA+AGG | 0.576481 | 8.4:-1454567 | None:intergenic |
| GATACAGATTGAAAATTAGG+AGG | 0.576640 | 8.4:-1456713 | None:intergenic |
| AAAACAGTATTGTTCGAGGC+AGG | 0.580046 | 8.4:+1456467 | MS.gene95157:CDS |
| TTGTACCCTAAAACTTTAGG+TGG | 0.581553 | 8.4:+1455739 | MS.gene95157:CDS |
| GCTAGACTTACAGCAGTCAC+AGG | 0.585127 | 8.4:-1454594 | None:intergenic |
| CTAACAATATATTTATCTGT+GGG | 0.585694 | 8.4:+1455595 | MS.gene95157:CDS |
| AGCCCATGGGACCATAGTAT+GGG | 0.591504 | 8.4:-1456437 | None:intergenic |
| ACACCCATACTATGGTCCCA+TGG | 0.599983 | 8.4:+1456434 | MS.gene95157:CDS |
| TGACAAAACAGTATTGTTCG+AGG | 0.612436 | 8.4:+1456463 | MS.gene95157:CDS |
| ATAGACAAGGAAGTAGCTGC+TGG | 0.614205 | 8.4:+1455564 | MS.gene95157:CDS |
| AAAATTAGGAGGAACTCTGT+AGG | 0.620221 | 8.4:-1456702 | None:intergenic |
| TGTTGCGTTCCAAGCCGTGG+CGG | 0.655159 | 8.4:-1453327 | None:intergenic |
| ATCTGTGGGTTCAGTCAAGG+AGG | 0.657320 | 8.4:+1455609 | MS.gene95157:CDS |
| ACGTGTTTGGAATTCCGCCA+CGG | 0.661265 | 8.4:+1453313 | MS.gene95157:CDS |
| TGTTCATGCTACAATAGACA+AGG | 0.664047 | 8.4:+1455551 | MS.gene95157:CDS |
| CAGAACACTAGCCAATGTCA+AGG | 0.665097 | 8.4:-1455716 | None:intergenic |
| AAATTACACCTGAAGCTAAG+CGG | 0.677674 | 8.4:+1455812 | MS.gene95157:CDS |
| TGCCCACTCAATAAACAACG+AGG | 0.786416 | 8.4:+1456645 | MS.gene95157:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAATTATTGTTTAATTTT+GGG | + | chr8.4:1454842-1454861 | MS.gene95157:intron | 10.0% |
| !! | AAATCATTATGTTATATGTA+GGG | + | chr8.4:1456284-1456303 | MS.gene95157:intron | 15.0% |
| !! | GAAAAAATAACCAAATTATA+GGG | - | chr8.4:1456560-1456579 | None:intergenic | 15.0% |
| !! | TAAATCATTATGTTATATGT+AGG | + | chr8.4:1456283-1456302 | MS.gene95157:intron | 15.0% |
| !! | TATTAACTTTCTGTATTTAA+AGG | - | chr8.4:1456073-1456092 | None:intergenic | 15.0% |
| !! | TGAAAAAATAACCAAATTAT+AGG | - | chr8.4:1456561-1456580 | None:intergenic | 15.0% |
| !! | TGTAAAATTAGGTAAATATT+TGG | - | chr8.4:1454182-1454201 | None:intergenic | 15.0% |
| !! | TTAATATCTCATTTGTAATT+TGG | - | chr8.4:1454435-1454454 | None:intergenic | 15.0% |
| !!! | ATAATATCATTTTCTAAAGT+CGG | - | chr8.4:1454509-1454528 | None:intergenic | 15.0% |
| !!! | ATATATCCATTTTTCTATTA+AGG | - | chr8.4:1455656-1455675 | None:intergenic | 15.0% |
| !!! | ATTTGATTTATTGAATTTTC+TGG | + | chr8.4:1456355-1456374 | MS.gene95157:intron | 15.0% |
| !!! | CAACATAATTTTGTAAAATT+AGG | - | chr8.4:1454193-1454212 | None:intergenic | 15.0% |
| !!! | CTAAAAAGTATATATAACAA+AGG | - | chr8.4:1455172-1455191 | None:intergenic | 15.0% |
| !!! | GTTGAATTATTGTTTAATTT+TGG | + | chr8.4:1454841-1454860 | MS.gene95157:intron | 15.0% |
| !! | AAACTAAACCTATGTAAAAA+TGG | - | chr8.4:1453712-1453731 | None:intergenic | 20.0% |
| !! | AATGTAGTAAGAATACAAAT+TGG | + | chr8.4:1454799-1454818 | MS.gene95157:intron | 20.0% |
| !! | ACATATTAGTATAGCTTATA+TGG | + | chr8.4:1453961-1453980 | MS.gene95157:intron | 20.0% |
| !! | ACATCATATAACAATCTTAA+AGG | + | chr8.4:1455333-1455352 | MS.gene95157:intron | 20.0% |
| !! | ATTGTACAGAATTAATATAC+AGG | - | chr8.4:1454673-1454692 | None:intergenic | 20.0% |
| !! | CACAGATAAATATATTGTTA+GGG | - | chr8.4:1455596-1455615 | None:intergenic | 20.0% |
| !! | CTAACAATATATTTATCTGT+GGG | + | chr8.4:1455595-1455614 | MS.gene95157:CDS | 20.0% |
| !! | TATTGACATTTGGTATTATT+AGG | + | chr8.4:1456609-1456628 | MS.gene95157:intron | 20.0% |
| !! | TCGATAATAATTAAGAAAAG+AGG | - | chr8.4:1453660-1453679 | None:intergenic | 20.0% |
| !! | TTATGTGGAAATATTTAGTT+TGG | + | chr8.4:1455955-1455974 | MS.gene95157:intron | 20.0% |
| !! | TTGTACAGAATTAATATACA+GGG | - | chr8.4:1454672-1454691 | None:intergenic | 20.0% |
| !! | TTTATTAAAATATGACCTTG+CGG | + | chr8.4:1454081-1454100 | MS.gene95157:intron | 20.0% |
| !!! | AAATAAATATGCTGTTTCAA+AGG | - | chr8.4:1455993-1456012 | None:intergenic | 20.0% |
| !!! | GTCGATAATATTTTCAATTT+AGG | + | chr8.4:1456230-1456249 | MS.gene95157:intron | 20.0% |
| !!! | TAATATCATTTTCTAAAGTC+GGG | - | chr8.4:1454508-1454527 | None:intergenic | 20.0% |
| !!! | TTTTGTTTATTCTTTGTAGA+TGG | + | chr8.4:1454534-1454553 | MS.gene95157:intron | 20.0% |
| ! | AAATATTTGGACATCTATTG+TGG | - | chr8.4:1454169-1454188 | None:intergenic | 25.0% |
| ! | AAGACACTAATTTATATAGC+TGG | + | chr8.4:1456322-1456341 | MS.gene95157:intron | 25.0% |
| ! | ACCAAATGTCAATATTGATA+TGG | - | chr8.4:1456603-1456622 | None:intergenic | 25.0% |
| ! | AGAAGAATTATTATGAAACG+TGG | - | chr8.4:1453429-1453448 | None:intergenic | 25.0% |
| ! | AGGACAGATCATATATTAAT+AGG | - | chr8.4:1454370-1454389 | None:intergenic | 25.0% |
| ! | ATAAATAAAACCAACTACCA+AGG | - | chr8.4:1454334-1454353 | None:intergenic | 25.0% |
| ! | CCACAGATAAATATATTGTT+AGG | - | chr8.4:1455597-1455616 | None:intergenic | 25.0% |
| ! | CCTAACAATATATTTATCTG+TGG | + | chr8.4:1455594-1455613 | MS.gene95157:CDS | 25.0% |
| ! | CTCAAAACAATTTAAAGACA+TGG | - | chr8.4:1453905-1453924 | None:intergenic | 25.0% |
| ! | TAAATTAGTGTCTTGACAAA+TGG | - | chr8.4:1456316-1456335 | None:intergenic | 25.0% |
| ! | TAGTAAGCAAACAATTATTG+AGG | - | chr8.4:1455076-1455095 | None:intergenic | 25.0% |
| ! | TAGTATAGCTTATATGGAAA+TGG | + | chr8.4:1453967-1453986 | MS.gene95157:intron | 25.0% |
| ! | TATATGATGTTTACAAGACA+TGG | - | chr8.4:1455323-1455342 | None:intergenic | 25.0% |
| ! | TCCATATCAATATTGACATT+TGG | + | chr8.4:1456599-1456618 | MS.gene95157:intron | 25.0% |
| ! | TCTGTAACAGATGAATTAAA+CGG | - | chr8.4:1455790-1455809 | None:intergenic | 25.0% |
| ! | TCTGTACAATTAATCATGAA+GGG | + | chr8.4:1454683-1454702 | MS.gene95157:intron | 25.0% |
| ! | TTACTAAGTTAACAATCAAG+AGG | - | chr8.4:1455007-1455026 | None:intergenic | 25.0% |
| ! | TTCTGTACAATTAATCATGA+AGG | + | chr8.4:1454682-1454701 | MS.gene95157:intron | 25.0% |
| !! | ATTATTATGAAACGTGGTTT+TGG | - | chr8.4:1453423-1453442 | None:intergenic | 25.0% |
| !! | TGATTTTGTACATTTATCGT+GGG | + | chr8.4:1454913-1454932 | MS.gene95157:intron | 25.0% |
| !! | TTATTATGAAACGTGGTTTT+GGG | - | chr8.4:1453422-1453441 | None:intergenic | 25.0% |
| !!! | AACTAACACCAATTTTTTCA+AGG | - | chr8.4:1456511-1456530 | None:intergenic | 25.0% |
| !!! | ATCCTTATTTTTAGTATGCT+TGG | + | chr8.4:1454737-1454756 | MS.gene95157:intron | 25.0% |
| !!! | GTTTAATTTTGGGTTACTAA+AGG | + | chr8.4:1454852-1454871 | MS.gene95157:intron | 25.0% |
| !!! | TCCTTATTTTTAGTATGCTT+GGG | + | chr8.4:1454738-1454757 | MS.gene95157:intron | 25.0% |
| AAACTATCATGTAGAGCTTA+TGG | - | chr8.4:1453935-1453954 | None:intergenic | 30.0% | |
| AATAATATGCATACAGTTGC+AGG | - | chr8.4:1453621-1453640 | None:intergenic | 30.0% | |
| ACATGCTCATGGAATTAATT+AGG | + | chr8.4:1454274-1454293 | MS.gene95157:intron | 30.0% | |
| AGAAGTGAATAATGTCTTGA+TGG | - | chr8.4:1453543-1453562 | None:intergenic | 30.0% | |
| ATTCCAAGTTCCCTATAATT+TGG | + | chr8.4:1456547-1456566 | MS.gene95157:intron | 30.0% | |
| ATTGATATGGACAGAATTGT+AGG | - | chr8.4:1456590-1456609 | None:intergenic | 30.0% | |
| GAAGTGAATAATGTCTTGAT+GGG | - | chr8.4:1453542-1453561 | None:intergenic | 30.0% | |
| GATAATAATATTCCCAGAAG+GGG | - | chr8.4:1453791-1453810 | None:intergenic | 30.0% | |
| GGATAATAATATTCCCAGAA+GGG | - | chr8.4:1453792-1453811 | None:intergenic | 30.0% | |
| GTGATTGTTAACAGTAGAAT+TGG | - | chr8.4:1453365-1453384 | None:intergenic | 30.0% | |
| TAACCAAATTATAGGGAACT+TGG | - | chr8.4:1456553-1456572 | None:intergenic | 30.0% | |
| TAATGATTTATTCGAGTGCA+AGG | - | chr8.4:1456273-1456292 | None:intergenic | 30.0% | |
| TATAACATTGTGTACATACC+AGG | - | chr8.4:1456411-1456430 | None:intergenic | 30.0% | |
| TCTGGGAATATTATTATCCA+GGG | + | chr8.4:1453793-1453812 | MS.gene95157:intron | 30.0% | |
| TGGATAATAATATTCCCAGA+AGG | - | chr8.4:1453793-1453812 | None:intergenic | 30.0% | |
| TTAAAGAAAACCAGTTGAAC+TGG | - | chr8.4:1456134-1456153 | None:intergenic | 30.0% | |
| TTCACTTGAGAAAGATGAAA+AGG | - | chr8.4:1455137-1455156 | None:intergenic | 30.0% | |
| TTCTTCTTCTTCTGTAGTAA+CGG | + | chr8.4:1453445-1453464 | MS.gene95157:intron | 30.0% | |
| TTGATATGGACAGAATTGTA+GGG | - | chr8.4:1456589-1456608 | None:intergenic | 30.0% | |
| TTTGAACTAAAAACAGAGAG+AGG | - | chr8.4:1455361-1455380 | None:intergenic | 30.0% | |
| ! | ACACATAAGGTTTTCTCTAT+TGG | - | chr8.4:1456049-1456068 | None:intergenic | 30.0% |
| ! | ATCTAAAAATTTTGTCGACC+TGG | + | chr8.4:1456390-1456409 | MS.gene95157:intron | 30.0% |
| ! | CACATAAGGTTTTCTCTATT+GGG | - | chr8.4:1456048-1456067 | None:intergenic | 30.0% |
| ! | GTGATTTTGTACATTTATCG+TGG | + | chr8.4:1454912-1454931 | MS.gene95157:intron | 30.0% |
| ! | TGTAGCATGAACATTTTGAA+CGG | - | chr8.4:1455544-1455563 | None:intergenic | 30.0% |
| ! | TGTATTTAAAGGCACACATA+AGG | - | chr8.4:1456062-1456081 | None:intergenic | 30.0% |
| ! | TTCTGGGAATATTATTATCC+AGG | + | chr8.4:1453792-1453811 | MS.gene95157:intron | 30.0% |
| !! | AAATATGCTGTTTCAAAGGA+CGG | - | chr8.4:1455989-1456008 | None:intergenic | 30.0% |
| !! | AGGTCGACAAAATTTTTAGA+TGG | - | chr8.4:1456391-1456410 | None:intergenic | 30.0% |
| !! | CAATTACTTTTATCCTCTTC+AGG | + | chr8.4:1455427-1455446 | MS.gene95157:intron | 30.0% |
| !! | TATTATGAAACGTGGTTTTG+GGG | - | chr8.4:1453421-1453440 | None:intergenic | 30.0% |
| !! | TGTTAGAGCTTTAAGGAAAA+AGG | + | chr8.4:1453874-1453893 | MS.gene95157:intron | 30.0% |
| !!! | AATTTTTTCAAGGAAAGGAG+GGG | - | chr8.4:1456501-1456520 | None:intergenic | 30.0% |
| !!! | ACACCAATTTTTTCAAGGAA+AGG | - | chr8.4:1456506-1456525 | None:intergenic | 30.0% |
| !!! | CAACTGGTTTTCTTTAATCA+GGG | + | chr8.4:1456137-1456156 | MS.gene95157:intron | 30.0% |
| !!! | CAATTTTTTCAAGGAAAGGA+GGG | - | chr8.4:1456502-1456521 | None:intergenic | 30.0% |
| !!! | CCTTATTTTTAGTATGCTTG+GGG | + | chr8.4:1454739-1454758 | MS.gene95157:intron | 30.0% |
| !!! | TCAACTGGTTTTCTTTAATC+AGG | + | chr8.4:1456136-1456155 | MS.gene95157:intron | 30.0% |
| AAATCACACTTACTGTCATG+TGG | - | chr8.4:1454899-1454918 | None:intergenic | 35.0% | |
| AAATTACACCTGAAGCTAAG+CGG | + | chr8.4:1455812-1455831 | MS.gene95157:CDS | 35.0% | |
| AAATTGAAGCTGCTCTGTTA+TGG | + | chr8.4:1453763-1453782 | MS.gene95157:intron | 35.0% | |
| AAGTCAATTCAAAATGACCC+TGG | - | chr8.4:1453813-1453832 | None:intergenic | 35.0% | |
| ACAATTTCTGATTCTGAGTG+AGG | + | chr8.4:1454307-1454326 | MS.gene95157:intron | 35.0% | |
| CACATAAACATTTGATGCAG+AGG | - | chr8.4:1455942-1455961 | None:intergenic | 35.0% | |
| CAGTTATAGTCAGTACAATG+TGG | - | chr8.4:1455102-1455121 | None:intergenic | 35.0% | |
| CATTTGGTACTTCTGAATTG+AGG | - | chr8.4:1453566-1453585 | None:intergenic | 35.0% | |
| CCCCAAGCATACTAAAAATA+AGG | - | chr8.4:1454742-1454761 | None:intergenic | 35.0% | |
| CCTCCTTTCCTTGAAAAAAT+TGG | + | chr8.4:1456500-1456519 | MS.gene95157:CDS | 35.0% | |
| CTCTGCATCAAATGTTTATG+TGG | + | chr8.4:1455940-1455959 | MS.gene95157:intron | 35.0% | |
| CTGTTGTACCCTAAAACTTT+AGG | + | chr8.4:1455736-1455755 | MS.gene95157:CDS | 35.0% | |
| GAAAACTCAAGTCTAGACAT+AGG | - | chr8.4:1454402-1454421 | None:intergenic | 35.0% | |
| TCAACTATCCACTTGACAAT+GGG | + | chr8.4:1454948-1454967 | MS.gene95157:intron | 35.0% | |
| TCATGAATGTCAAACCATGA+AGG | - | chr8.4:1454570-1454589 | None:intergenic | 35.0% | |
| TGACAAAACAGTATTGTTCG+AGG | + | chr8.4:1456463-1456482 | MS.gene95157:CDS | 35.0% | |
| TGATAAGTGTAATCGTTCCA+AGG | - | chr8.4:1456195-1456214 | None:intergenic | 35.0% | |
| TGATATGGACAGAATTGTAG+GGG | - | chr8.4:1456588-1456607 | None:intergenic | 35.0% | |
| TGGTATTATTAGGCTTATCC+TGG | + | chr8.4:1456619-1456638 | MS.gene95157:intron | 35.0% | |
| TGTATACCGATGACAACAAT+AGG | - | chr8.4:1456167-1456186 | None:intergenic | 35.0% | |
| TGTTCATGCTACAATAGACA+AGG | + | chr8.4:1455551-1455570 | MS.gene95157:CDS | 35.0% | |
| TTATACAGACACCCATACTA+TGG | + | chr8.4:1456426-1456445 | MS.gene95157:intron | 35.0% | |
| TTCAACTATCCACTTGACAA+TGG | + | chr8.4:1454947-1454966 | MS.gene95157:intron | 35.0% | |
| TTGAACTGGAATGCTTTACT+TGG | - | chr8.4:1456120-1456139 | None:intergenic | 35.0% | |
| TTGTACCCTAAAACTTTAGG+TGG | + | chr8.4:1455739-1455758 | MS.gene95157:CDS | 35.0% | |
| ! | AACAGTCTCAAATGTGCTTT+TGG | - | chr8.4:1453854-1453873 | None:intergenic | 35.0% |
| ! | ACCAATAAGCACCAAAGTTT+TGG | - | chr8.4:1455256-1455275 | None:intergenic | 35.0% |
| ! | ATCACTTGAGATGCCATTTA+TGG | + | chr8.4:1454456-1454475 | MS.gene95157:intron | 35.0% |
| ! | CATTTTTCTATTAAGGACGC+GGG | - | chr8.4:1455649-1455668 | None:intergenic | 35.0% |
| ! | GACTGTTTGTTAGAGCTTTA+AGG | + | chr8.4:1453867-1453886 | MS.gene95157:intron | 35.0% |
| ! | TAAGGTTTTCTCTATTGGGT+CGG | - | chr8.4:1456044-1456063 | None:intergenic | 35.0% |
| ! | TCACTTGAGATGCCATTTAT+GGG | + | chr8.4:1454457-1454476 | MS.gene95157:intron | 35.0% |
| ! | TGGTTTTCTTTAATCAGGGT+CGG | + | chr8.4:1456141-1456160 | MS.gene95157:intron | 35.0% |
| ! | TGTAGTAACGGAAAAACCAA+TGG | + | chr8.4:1453457-1453476 | MS.gene95157:intron | 35.0% |
| !! | AAATGGTGACATTGTTTTGC+AGG | + | chr8.4:1455691-1455710 | MS.gene95157:intron | 35.0% |
| !! | ACCAAAACTTTGGTGCTTAT+TGG | + | chr8.4:1455252-1455271 | MS.gene95157:intron | 35.0% |
| !! | CCATTTTTCTATTAAGGACG+CGG | - | chr8.4:1455650-1455669 | None:intergenic | 35.0% |
| !! | CTCAATTCAGAAGTACCAAA+TGG | + | chr8.4:1453564-1453583 | MS.gene95157:CDS | 35.0% |
| !! | TAATGTCTTGATGGGTTCAT+TGG | - | chr8.4:1453534-1453553 | None:intergenic | 35.0% |
| !!! | AAGCACCAAAGTTTTGGTTT+AGG | - | chr8.4:1455250-1455269 | None:intergenic | 35.0% |
| !!! | AGCACCAAAGTTTTGGTTTA+GGG | - | chr8.4:1455249-1455268 | None:intergenic | 35.0% |
| !!! | AGTTTTGTTCTGTGGTTACA+CGG | + | chr8.4:1453488-1453507 | MS.gene95157:CDS | 35.0% |
| !!! | CCAATTTTTTCAAGGAAAGG+AGG | - | chr8.4:1456503-1456522 | None:intergenic | 35.0% |
| !!! | TGTCTGTGCCATTTTTACAT+AGG | + | chr8.4:1453701-1453720 | MS.gene95157:intron | 35.0% |
| AAAACAGTATTGTTCGAGGC+AGG | + | chr8.4:1456467-1456486 | MS.gene95157:CDS | 40.0% | |
| AACTCAAGTCTAGACATAGG+TGG | - | chr8.4:1454399-1454418 | None:intergenic | 40.0% | |
| AACTCATTCCCATTGTCAAG+TGG | - | chr8.4:1454959-1454978 | None:intergenic | 40.0% | |
| AATTACACCTGAAGCTAAGC+GGG | + | chr8.4:1455813-1455832 | MS.gene95157:CDS | 40.0% | |
| AGCAAACTATTCTCGTCGTT+TGG | - | chr8.4:1455516-1455535 | None:intergenic | 40.0% | |
| AGCAGAAGGAAAAGACCATT+TGG | - | chr8.4:1453582-1453601 | None:intergenic | 40.0% | |
| AGTCTAGACATAGGTGGAAT+AGG | - | chr8.4:1454393-1454412 | None:intergenic | 40.0% | |
| ATGAGCAACCTGCTGATAAA+TGG | + | chr8.4:1455674-1455693 | MS.gene95157:intron | 40.0% | |
| CAATGTCACCATTTATCAGC+AGG | - | chr8.4:1455685-1455704 | None:intergenic | 40.0% | |
| CACAAGTCAAATTGCTCAAC+AGG | - | chr8.4:1455407-1455426 | None:intergenic | 40.0% | |
| CACAGCAGAAATGTGGAAAA+TGG | - | chr8.4:1454776-1454795 | None:intergenic | 40.0% | |
| CATCGGTATACAATTGTCCT+TGG | + | chr8.4:1456175-1456194 | MS.gene95157:intron | 40.0% | |
| CCGCGTCCTTAATAGAAAAA+TGG | + | chr8.4:1455647-1455666 | MS.gene95157:intron | 40.0% | |
| CTCCTCGTTGTTTATTGAGT+GGG | - | chr8.4:1456650-1456669 | None:intergenic | 40.0% | |
| GAAGCTGATTGCAAGCTAAT+AGG | - | chr8.4:1454486-1454505 | None:intergenic | 40.0% | |
| GCTAATAGGTTGCCCATAAA+TGG | - | chr8.4:1454472-1454491 | None:intergenic | 40.0% | |
| GTGCACCATCTATAAGAGAA+CGG | - | chr8.4:1455225-1455244 | None:intergenic | 40.0% | |
| TACCCTAAAACTTTAGGTGG+AGG | + | chr8.4:1455742-1455761 | MS.gene95157:CDS | 40.0% | |
| TCAACATCATCATCCTGAAG+AGG | - | chr8.4:1455443-1455462 | None:intergenic | 40.0% | |
| TGCAAGGCTCATATCAAAAG+TGG | - | chr8.4:1456257-1456276 | None:intergenic | 40.0% | |
| TGTAAAAATGGCACAGACAC+CGG | - | chr8.4:1453700-1453719 | None:intergenic | 40.0% | |
| TTGCACCGTTCTCTTATAGA+TGG | + | chr8.4:1455217-1455236 | MS.gene95157:intron | 40.0% | |
| TTGTACATTTATCGTGGGTG+TGG | + | chr8.4:1454918-1454937 | MS.gene95157:intron | 40.0% | |
| TTTATCTGTGGGTTCAGTCA+AGG | + | chr8.4:1455606-1455625 | MS.gene95157:CDS | 40.0% | |
| ! | ACAGAGCAGCTTCAATTTTG+TGG | - | chr8.4:1453761-1453780 | None:intergenic | 40.0% |
| ! | AGCTAAAGCATCTTGAGTCT+TGG | + | chr8.4:1456668-1456687 | MS.gene95157:CDS | 40.0% |
| ! | AGTAACGGAAAAACCAATGG+CGG | + | chr8.4:1453460-1453479 | MS.gene95157:intron | 40.0% |
| ! | ATGGTTCTGTAATGCCTTCA+TGG | + | chr8.4:1454553-1454572 | MS.gene95157:CDS | 40.0% |
| ! | CATTTTGCACAGCAGAAATG+TGG | - | chr8.4:1454783-1454802 | None:intergenic | 40.0% |
| ! | CTAGACTTGAGTTTTCTGCT+TGG | + | chr8.4:1454406-1454425 | MS.gene95157:intron | 40.0% |
| ! | GTAAAGCATTCCAGTTCAAC+TGG | + | chr8.4:1456121-1456140 | MS.gene95157:intron | 40.0% |
| ! | TGGTGTTAGTTGCGAGTTTA+AGG | + | chr8.4:1456520-1456539 | MS.gene95157:CDS | 40.0% |
| ! | TTTGGGTTACTAAAGGAGAC+TGG | + | chr8.4:1454859-1454878 | MS.gene95157:intron | 40.0% |
| !!! | CACCAAAGTTTTGGTTTAGG+GGG | - | chr8.4:1455247-1455266 | None:intergenic | 40.0% |
| !!! | GCACCAAAGTTTTGGTTTAG+GGG | - | chr8.4:1455248-1455267 | None:intergenic | 40.0% |
| ATAAGTACCCGCTTAGCTTC+AGG | - | chr8.4:1455823-1455842 | None:intergenic | 45.0% | |
| ATAGACAAGGAAGTAGCTGC+TGG | + | chr8.4:1455564-1455583 | MS.gene95157:CDS | 45.0% | |
| ATTTATCGTGGGTGTGGACA+TGG | + | chr8.4:1454924-1454943 | MS.gene95157:intron | 45.0% | |
| CACCCCCTAAACCAAAACTT+TGG | + | chr8.4:1455242-1455261 | MS.gene95157:intron | 45.0% | |
| CAGAACACTAGCCAATGTCA+AGG | - | chr8.4:1455719-1455738 | None:intergenic | 45.0% | |
| CATACGATATGAAAGCCGCA+AGG | - | chr8.4:1454099-1454118 | None:intergenic | 45.0% | |
| CTAGACATAGGTGGAATAGG+AGG | - | chr8.4:1454390-1454409 | None:intergenic | 45.0% | |
| GCAGAGGCAATCAGAGAAAA+TGG | - | chr8.4:1455926-1455945 | None:intergenic | 45.0% | |
| GCTCCTCGTTGTTTATTGAG+TGG | - | chr8.4:1456651-1456670 | None:intergenic | 45.0% | |
| TGCCCACTCAATAAACAACG+AGG | + | chr8.4:1456645-1456664 | MS.gene95157:CDS | 45.0% | |
| TTTATTGAGTGGGCAAGACC+AGG | - | chr8.4:1456640-1456659 | None:intergenic | 45.0% | |
| ! | CGCCTCCACCTAAAGTTTTA+GGG | - | chr8.4:1455747-1455766 | None:intergenic | 45.0% |
| ! | GTCGGTGTACTTTTGATGGA+TGG | - | chr8.4:1456026-1456045 | None:intergenic | 45.0% |
| ! | TTGGGTCGGTGTACTTTTGA+TGG | - | chr8.4:1456030-1456049 | None:intergenic | 45.0% |
| ! | TTTTGCAGGTGCCTTGACAT+TGG | + | chr8.4:1455705-1455724 | MS.gene95157:intron | 45.0% |
| ACAAAACTTCGAGCCGCCAT+TGG | - | chr8.4:1453476-1453495 | None:intergenic | 50.0% | |
| ACACCCATACTATGGTCCCA+TGG | + | chr8.4:1456434-1456453 | MS.gene95157:CDS | 50.0% | |
| AGCATGTGTGTAACGCGCTA+AGG | - | chr8.4:1454261-1454280 | None:intergenic | 50.0% | |
| AGCCCATGGGACCATAGTAT+GGG | - | chr8.4:1456440-1456459 | None:intergenic | 50.0% | |
| ATCTGTGGGTTCAGTCAAGG+AGG | + | chr8.4:1455609-1455628 | MS.gene95157:CDS | 50.0% | |
| CACCCATACTATGGTCCCAT+GGG | + | chr8.4:1456435-1456454 | MS.gene95157:CDS | 50.0% | |
| CTGATTCTGAGTGAGGTCCT+TGG | + | chr8.4:1454314-1454333 | MS.gene95157:intron | 50.0% | |
| GCTAGACTTACAGCAGTCAC+AGG | - | chr8.4:1454597-1454616 | None:intergenic | 50.0% | |
| GGTCGGCCTATTGTTGTCAT+CGG | + | chr8.4:1456158-1456177 | MS.gene95157:intron | 50.0% | |
| GGTTACTAAAGGAGACTGGC+AGG | + | chr8.4:1454863-1454882 | MS.gene95157:intron | 50.0% | |
| GTTCTGTGGTTACACGGTCT+TGG | + | chr8.4:1453494-1453513 | MS.gene95157:CDS | 50.0% | |
| TCTGTTATGGCTCCCCTTCT+GGG | + | chr8.4:1453776-1453795 | MS.gene95157:intron | 50.0% | |
| TGCATACAGTTGCAGGTGAC+CGG | - | chr8.4:1453614-1453633 | None:intergenic | 50.0% | |
| TGTGTGTAACGCGCTAAGGA+CGG | - | chr8.4:1454257-1454276 | None:intergenic | 50.0% | |
| ! | ACGTGTTTGGAATTCCGCCA+CGG | + | chr8.4:1453313-1453332 | MS.gene95157:CDS | 50.0% |
| ! | GCGCCTCCACCTAAAGTTTT+AGG | - | chr8.4:1455748-1455767 | None:intergenic | 50.0% |
| ! | TGAGTGAGGTCCTTGGTAGT+TGG | + | chr8.4:1454321-1454340 | MS.gene95157:intron | 50.0% |
| ! | TGTTTTGTCAGCCAGCCCAT+GGG | - | chr8.4:1456453-1456472 | None:intergenic | 50.0% |
| ! | TTACACGGTCTTGGTGACTC+TGG | + | chr8.4:1453503-1453522 | MS.gene95157:CDS | 50.0% |
| !! | AGGCGCTGTTTTCAGTGGTT+GGG | + | chr8.4:1455762-1455781 | MS.gene95157:CDS | 50.0% |
| !! | GTCTTGATGGGTTCATTGGC+AGG | - | chr8.4:1453530-1453549 | None:intergenic | 50.0% |
| !!! | CGGCTCGAAGTTTTGTTCTG+TGG | + | chr8.4:1453480-1453499 | MS.gene95157:CDS | 50.0% |
| CAGCCCATGGGACCATAGTA+TGG | - | chr8.4:1456441-1456460 | None:intergenic | 55.0% | |
| CATACTATGGTCCCATGGGC+TGG | + | chr8.4:1456439-1456458 | MS.gene95157:CDS | 55.0% | |
| CTCTGTTATGGCTCCCCTTC+TGG | + | chr8.4:1453775-1453794 | MS.gene95157:intron | 55.0% | |
| GATGCTGAGCTTCTCGTGTC+CGG | + | chr8.4:1453678-1453697 | MS.gene95157:intron | 55.0% | |
| GCGCGTTACACACATGCTCA+TGG | + | chr8.4:1454263-1454282 | MS.gene95157:intron | 55.0% | |
| GTGTGTAACGCGCTAAGGAC+GGG | - | chr8.4:1454256-1454275 | None:intergenic | 55.0% | |
| ! | CTGTTTTGTCAGCCAGCCCA+TGG | - | chr8.4:1456454-1456473 | None:intergenic | 55.0% |
| ! | GTTTGTTGCGTTCCAAGCCG+TGG | - | chr8.4:1453333-1453352 | None:intergenic | 55.0% |
| ! | TTTGGAATTCCGCCACGGCT+TGG | + | chr8.4:1453318-1453337 | MS.gene95157:CDS | 55.0% |
| !!! | GAGGCGCTGTTTTCAGTGGT+TGG | + | chr8.4:1455761-1455780 | MS.gene95157:CDS | 55.0% |
| AAGGACGGGTCTGGTGGAAC+TGG | - | chr8.4:1454242-1454261 | None:intergenic | 60.0% | |
| TAACGCGCTAAGGACGGGTC+TGG | - | chr8.4:1454251-1454270 | None:intergenic | 60.0% | |
| TCCTTCTGCTCCTCACGCTC+CGG | + | chr8.4:1453592-1453611 | MS.gene95157:CDS | 60.0% | |
| TGTTGCGTTCCAAGCCGTGG+CGG | - | chr8.4:1453330-1453349 | None:intergenic | 60.0% | |
| !!! | GGTGGAGGCGCTGTTTTCAG+TGG | + | chr8.4:1455757-1455776 | MS.gene95157:CDS | 60.0% |
| ACCGGAGCGTGAGGAGCAGA+AGG | - | chr8.4:1453596-1453615 | None:intergenic | 65.0% | |
| TTGCAGGTGACCGGAGCGTG+AGG | - | chr8.4:1453605-1453624 | None:intergenic | 65.0% | |
| CGCGCTAAGGACGGGTCTGG+TGG | - | chr8.4:1454248-1454267 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 1453311 | 1456720 | 1453311 | ID=MS.gene95157 |
| chr8.4 | mRNA | 1453311 | 1456720 | 1453311 | ID=MS.gene95157.t1;Parent=MS.gene95157 |
| chr8.4 | exon | 1453311 | 1453372 | 1453311 | ID=MS.gene95157.t1.exon1;Parent=MS.gene95157.t1 |
| chr8.4 | CDS | 1453311 | 1453372 | 1453311 | ID=cds.MS.gene95157.t1;Parent=MS.gene95157.t1 |
| chr8.4 | exon | 1453462 | 1453626 | 1453462 | ID=MS.gene95157.t1.exon2;Parent=MS.gene95157.t1 |
| chr8.4 | CDS | 1453462 | 1453626 | 1453462 | ID=cds.MS.gene95157.t1;Parent=MS.gene95157.t1 |
| chr8.4 | exon | 1454553 | 1454605 | 1454553 | ID=MS.gene95157.t1.exon3;Parent=MS.gene95157.t1 |
| chr8.4 | CDS | 1454553 | 1454605 | 1454553 | ID=cds.MS.gene95157.t1;Parent=MS.gene95157.t1 |
| chr8.4 | exon | 1455507 | 1455630 | 1455507 | ID=MS.gene95157.t1.exon4;Parent=MS.gene95157.t1 |
| chr8.4 | CDS | 1455507 | 1455630 | 1455507 | ID=cds.MS.gene95157.t1;Parent=MS.gene95157.t1 |
| chr8.4 | exon | 1455713 | 1455834 | 1455713 | ID=MS.gene95157.t1.exon5;Parent=MS.gene95157.t1 |
| chr8.4 | CDS | 1455713 | 1455834 | 1455713 | ID=cds.MS.gene95157.t1;Parent=MS.gene95157.t1 |
| chr8.4 | exon | 1456434 | 1456541 | 1456434 | ID=MS.gene95157.t1.exon6;Parent=MS.gene95157.t1 |
| chr8.4 | CDS | 1456434 | 1456541 | 1456434 | ID=cds.MS.gene95157.t1;Parent=MS.gene95157.t1 |
| chr8.4 | exon | 1456631 | 1456720 | 1456631 | ID=MS.gene95157.t1.exon7;Parent=MS.gene95157.t1 |
| chr8.4 | CDS | 1456631 | 1456720 | 1456631 | ID=cds.MS.gene95157.t1;Parent=MS.gene95157.t1 |
| Gene Sequence |
| Protein sequence |
