Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99832.t1 | XP_003622165.1 | 97.3 | 222 | 6 | 0 | 1 | 222 | 5 | 226 | 3.40E-117 | 431 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99832.t1 | Q8LEF6 | 64.4 | 225 | 76 | 2 | 1 | 222 | 1 | 224 | 4.5e-73 | 275.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99832.t1 | G7L383 | 97.3 | 222 | 6 | 0 | 1 | 222 | 5 | 226 | 2.5e-117 | 431.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene99832 | 0.82973 | 4.37E-55 | -1.69E-46 |
| MS.gene049614 | MS.gene99832 | 0.847015 | 1.51E-59 | -1.69E-46 |
| MS.gene050076 | MS.gene99832 | 0.808109 | 3.64E-50 | -1.69E-46 |
| MS.gene050432 | MS.gene99832 | 0.804067 | 2.58E-49 | -1.69E-46 |
| MS.gene050767 | MS.gene99832 | 0.810674 | 1.03E-50 | -1.69E-46 |
| MS.gene050770 | MS.gene99832 | 0.817436 | 3.30E-52 | -1.69E-46 |
| MS.gene051387 | MS.gene99832 | 0.801293 | 9.64E-49 | -1.69E-46 |
| MS.gene052271 | MS.gene99832 | 0.813504 | 2.48E-51 | -1.69E-46 |
| MS.gene052287 | MS.gene99832 | 0.813676 | 2.27E-51 | -1.69E-46 |
| MS.gene052379 | MS.gene99832 | 0.824429 | 8.11E-54 | -1.69E-46 |
| MS.gene053322 | MS.gene99832 | 0.837516 | 4.96E-57 | -1.69E-46 |
| MS.gene053813 | MS.gene99832 | 0.800356 | 1.50E-48 | -1.69E-46 |
| MS.gene054802 | MS.gene99832 | 0.815569 | 8.64E-52 | -1.69E-46 |
| MS.gene054803 | MS.gene99832 | 0.813307 | 2.74E-51 | -1.69E-46 |
| MS.gene054804 | MS.gene99832 | 0.814924 | 1.20E-51 | -1.69E-46 |
| MS.gene055277 | MS.gene99832 | 0.811026 | 8.60E-51 | -1.69E-46 |
| MS.gene055390 | MS.gene99832 | 0.805764 | 1.14E-49 | -1.69E-46 |
| MS.gene055412 | MS.gene99832 | 0.80522 | 1.48E-49 | -1.69E-46 |
| MS.gene055499 | MS.gene99832 | 0.817261 | 3.61E-52 | -1.69E-46 |
| MS.gene055647 | MS.gene99832 | 0.806755 | 7.05E-50 | -1.69E-46 |
| MS.gene05592 | MS.gene99832 | 0.815541 | 8.77E-52 | -1.69E-46 |
| MS.gene056410 | MS.gene99832 | 0.817335 | 3.48E-52 | -1.69E-46 |
| MS.gene057011 | MS.gene99832 | 0.82169 | 3.53E-53 | -1.69E-46 |
| MS.gene057129 | MS.gene99832 | 0.801314 | 9.55E-49 | -1.69E-46 |
| MS.gene057146 | MS.gene99832 | 0.840805 | 6.97E-58 | -1.69E-46 |
| MS.gene05811 | MS.gene99832 | 0.811449 | 6.96E-51 | -1.69E-46 |
| MS.gene058293 | MS.gene99832 | 0.80771 | 4.43E-50 | -1.69E-46 |
| MS.gene058323 | MS.gene99832 | 0.803415 | 3.52E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene99832 | 0.839139 | 1.89E-57 | -1.69E-46 |
| MS.gene059029 | MS.gene99832 | 0.810048 | 1.40E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene99832 | 0.824706 | 6.98E-54 | -1.69E-46 |
| MS.gene059688 | MS.gene99832 | 0.81229 | 4.57E-51 | -1.69E-46 |
| MS.gene059692 | MS.gene99832 | 0.801843 | 7.44E-49 | -1.69E-46 |
| MS.gene059695 | MS.gene99832 | 0.805748 | 1.15E-49 | -1.69E-46 |
| MS.gene059711 | MS.gene99832 | 0.807308 | 5.39E-50 | -1.69E-46 |
| MS.gene059960 | MS.gene99832 | 0.827978 | 1.16E-54 | -1.69E-46 |
| MS.gene060837 | MS.gene99832 | 0.802725 | 4.90E-49 | -1.69E-46 |
| MS.gene061200 | MS.gene99832 | 0.842496 | 2.50E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99832.t1 | MTR_7g028600 | 97.297 | 222 | 6 | 0 | 1 | 222 | 5 | 226 | 5.33e-157 | 436 |
| MS.gene99832.t1 | MTR_7g079540 | 34.225 | 187 | 96 | 8 | 49 | 222 | 86 | 258 | 2.43e-17 | 79.3 |
| MS.gene99832.t1 | MTR_7g079540 | 34.225 | 187 | 96 | 8 | 49 | 222 | 86 | 258 | 3.97e-17 | 79.3 |
| MS.gene99832.t1 | MTR_3g096300 | 28.155 | 206 | 115 | 7 | 14 | 217 | 12 | 186 | 2.82e-16 | 75.9 |
| MS.gene99832.t1 | MTR_8g442660 | 28.155 | 206 | 115 | 7 | 14 | 217 | 12 | 186 | 2.82e-16 | 75.9 |
| MS.gene99832.t1 | MTR_1567s0010 | 36.196 | 163 | 87 | 6 | 69 | 227 | 244 | 393 | 2.02e-15 | 75.1 |
| MS.gene99832.t1 | MTR_7g033710 | 29.189 | 185 | 118 | 6 | 53 | 231 | 429 | 606 | 5.43e-13 | 68.2 |
| MS.gene99832.t1 | MTR_5g033080 | 31.148 | 183 | 109 | 7 | 49 | 225 | 456 | 627 | 4.04e-11 | 62.8 |
| MS.gene99832.t1 | MTR_5g033080 | 31.148 | 183 | 109 | 7 | 49 | 225 | 281 | 452 | 6.46e-11 | 62.0 |
| MS.gene99832.t1 | MTR_2g018350 | 26.064 | 188 | 123 | 6 | 49 | 230 | 359 | 536 | 7.77e-11 | 62.0 |
| MS.gene99832.t1 | MTR_6g078080 | 25.532 | 188 | 124 | 6 | 49 | 230 | 365 | 542 | 9.45e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99832.t1 | AT5G14100 | 64.889 | 225 | 75 | 2 | 1 | 222 | 1 | 224 | 1.16e-94 | 278 |
| MS.gene99832.t1 | AT4G33460 | 30.058 | 173 | 98 | 5 | 48 | 217 | 39 | 191 | 2.64e-15 | 73.6 |
| MS.gene99832.t1 | AT1G65410 | 31.278 | 227 | 134 | 10 | 4 | 222 | 45 | 257 | 2.96e-15 | 73.9 |
| MS.gene99832.t1 | AT4G18050 | 24.413 | 213 | 147 | 6 | 23 | 230 | 329 | 532 | 1.20e-11 | 64.3 |
| MS.gene99832.t1 | AT4G18050 | 24.413 | 213 | 147 | 6 | 23 | 230 | 339 | 542 | 1.31e-11 | 64.3 |
| MS.gene99832.t1 | AT1G70610 | 30.114 | 176 | 114 | 5 | 49 | 222 | 455 | 623 | 2.22e-11 | 63.5 |
| MS.gene99832.t1 | AT5G46540 | 25.234 | 214 | 144 | 8 | 23 | 230 | 331 | 534 | 7.33e-11 | 62.0 |
Find 59 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCCCCGATTTATTAATAT+TGG | 0.208491 | 7.2:+71551732 | MS.gene99832:CDS |
| AAGACAATACCGACCCTTTC+CGG | 0.262908 | 7.2:-71550610 | None:intergenic |
| GTACTTGATGAAGTCACTTT+TGG | 0.293522 | 7.2:+71551277 | MS.gene99832:CDS |
| CTCATCCAATATTAATAAAT+CGG | 0.302866 | 7.2:-71551737 | None:intergenic |
| ATTCATACCTCTCTGGAAAC+TGG | 0.375900 | 7.2:-71550633 | None:intergenic |
| ATATTGGATGAGCCTCTTGC+CGG | 0.392045 | 7.2:+71551748 | MS.gene99832:CDS |
| TCATCCAATATTAATAAATC+GGG | 0.396877 | 7.2:-71551736 | None:intergenic |
| TAACTATAGGTTGGATTAAG+TGG | 0.399225 | 7.2:+71551474 | MS.gene99832:intron |
| TTGCAGTTGTTTACCAAGTC+CGG | 0.405056 | 7.2:-71551767 | None:intergenic |
| TGGATTAAGTGGGATATCAT+TGG | 0.410784 | 7.2:+71551485 | MS.gene99832:CDS |
| GTAACTGCAGCGAGTGGTTG+AGG | 0.413989 | 7.2:-71548786 | None:intergenic |
| GGAATAAACAAACCAACATC+TGG | 0.434832 | 7.2:+71550523 | MS.gene99832:CDS |
| TGAACCCTTGGTGCCGGAAA+GGG | 0.437368 | 7.2:+71550597 | MS.gene99832:CDS |
| AGTTTATATTCATACCTCTC+TGG | 0.442467 | 7.2:-71550640 | None:intergenic |
| GATGAGCCTCTTGCCGGACT+TGG | 0.455049 | 7.2:+71551754 | MS.gene99832:CDS |
| GGCTCCAGAGGGCTATTCAC+TGG | 0.457763 | 7.2:+71551350 | MS.gene99832:CDS |
| CTGAACCCTTGGTGCCGGAA+AGG | 0.467485 | 7.2:+71550596 | MS.gene99832:CDS |
| ATCTTCTGAACCCTTGGTGC+CGG | 0.470612 | 7.2:+71550591 | MS.gene99832:CDS |
| AAGAAGAAAGTGGTGGTTTG+AGG | 0.474000 | 7.2:-71548715 | None:intergenic |
| TTAAGAGAGAATCTTGCTCT+AGG | 0.490247 | 7.2:+71551328 | MS.gene99832:CDS |
| TTACAAACGTCGCCTTGCCT+TGG | 0.493843 | 7.2:+71551536 | MS.gene99832:CDS |
| GGTGATCGGTGGATTAATAG+AGG | 0.499448 | 7.2:-71548684 | None:intergenic |
| AAGTCAATCTTCTGAACCCT+TGG | 0.517429 | 7.2:+71550585 | MS.gene99832:CDS |
| ACTTACTAATTGTATTGCCA+AGG | 0.520140 | 7.2:-71551553 | None:intergenic |
| TTGAGGAGAGCGAGAAAGTG+AGG | 0.528542 | 7.2:-71548741 | None:intergenic |
| AGTGAGGGAAAAGAAGAAAG+TGG | 0.547184 | 7.2:-71548725 | None:intergenic |
| TTTGGGTGGCCAAGACAAAA+GGG | 0.552958 | 7.2:+71551295 | MS.gene99832:CDS |
| CCGACCCTTTCCGGCACCAA+GGG | 0.562973 | 7.2:-71550601 | None:intergenic |
| AACTATAGGTTGGATTAAGT+GGG | 0.566656 | 7.2:+71551475 | MS.gene99832:intron |
| ATCTTGCTCTAGGGCTCCAG+AGG | 0.568170 | 7.2:+71551338 | MS.gene99832:CDS |
| TAAGAGAGAATCTTGCTCTA+GGG | 0.569781 | 7.2:+71551329 | MS.gene99832:CDS |
| AGGAAGTGAAAGGTGATCGG+TGG | 0.570097 | 7.2:-71548695 | None:intergenic |
| CTACCCAGTGAATAGCCCTC+TGG | 0.579623 | 7.2:-71551354 | None:intergenic |
| CCGTCTATCACCTATGCCAA+TGG | 0.583023 | 7.2:+71548658 | None:intergenic |
| AAGGGTTCAGAAGATTGACT+TGG | 0.583046 | 7.2:-71550583 | None:intergenic |
| GGATTAATAGAGGTAGCCAT+TGG | 0.588375 | 7.2:-71548674 | None:intergenic |
| GCTCCAGAGGGCTATTCACT+GGG | 0.588567 | 7.2:+71551351 | MS.gene99832:CDS |
| AAGAAGCTACAATACGATTG+AGG | 0.591247 | 7.2:-71548758 | None:intergenic |
| CTAATTGTATTGCCAAGGCA+AGG | 0.596068 | 7.2:-71551548 | None:intergenic |
| ATAGAGGTAGCCATTGGCAT+AGG | 0.596136 | 7.2:-71548668 | None:intergenic |
| AGAAGCTTAAGCTCAGTCCC+TGG | 0.601867 | 7.2:-71549393 | None:intergenic |
| TGAGGAGAGCGAGAAAGTGA+GGG | 0.615692 | 7.2:-71548740 | None:intergenic |
| TTGAGGAAGTGAAAGGTGAT+CGG | 0.630954 | 7.2:-71548698 | None:intergenic |
| TGTTTACCAAGTCCGGCAAG+AGG | 0.631807 | 7.2:-71551760 | None:intergenic |
| TAACCGCCACTGAGAGAGTG+AGG | 0.633284 | 7.2:-71551516 | None:intergenic |
| ACCGACCCTTTCCGGCACCA+AGG | 0.641973 | 7.2:-71550602 | None:intergenic |
| CCCTTGGTGCCGGAAAGGGT+CGG | 0.645717 | 7.2:+71550601 | MS.gene99832:CDS |
| GATGTTAGCTATCAACCACC+AGG | 0.652280 | 7.2:+71549375 | MS.gene99832:CDS |
| AGCTTAAGCTCAGTCCCTGG+TGG | 0.655370 | 7.2:-71549390 | None:intergenic |
| ATGTGAATAGATCCAGATGT+TGG | 0.656736 | 7.2:-71550535 | None:intergenic |
| AGAAGAGTAACTGCAGCGAG+TGG | 0.657091 | 7.2:-71548792 | None:intergenic |
| TTGTCTTCCAGTTTCCAGAG+AGG | 0.657449 | 7.2:+71550626 | MS.gene99832:CDS |
| TGGTGGTTTGAGGAAGTGAA+AGG | 0.664873 | 7.2:-71548705 | None:intergenic |
| CATCCAATATTAATAAATCG+GGG | 0.670071 | 7.2:-71551735 | None:intergenic |
| AATCCTCACTCTCTCAGTGG+CGG | 0.673252 | 7.2:+71551513 | MS.gene99832:CDS |
| GAGGGAAAAGAAGAAAGTGG+TGG | 0.674357 | 7.2:-71548722 | None:intergenic |
| TCTTGCTCTAGGGCTCCAGA+GGG | 0.699634 | 7.2:+71551339 | MS.gene99832:CDS |
| AAGAATCCTCACTCTCTCAG+TGG | 0.707736 | 7.2:+71551510 | MS.gene99832:CDS |
| ATGTTAGCTATCAACCACCA+GGG | 0.741890 | 7.2:+71549376 | MS.gene99832:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTTTAAAAACCAAAT+CGG | - | chr7.2:71550039-71550058 | None:intergenic | 10.0% |
| !!! | ATTATGTATCATTAATTTTT+AGG | + | chr7.2:71549479-71549498 | MS.gene99832:intron | 10.0% |
| !!! | TCATTTTTTCAAATTATTAT+CGG | + | chr7.2:71549575-71549594 | MS.gene99832:intron | 10.0% |
| !!! | TGAATTTGATTTTTATTATA+CGG | + | chr7.2:71549054-71549073 | MS.gene99832:intron | 10.0% |
| !!! | TTATGTATCATTAATTTTTA+GGG | + | chr7.2:71549480-71549499 | MS.gene99832:intron | 10.0% |
| !!! | TTTTAAAATATTTCTTAGAA+CGG | + | chr7.2:71550046-71550065 | MS.gene99832:intron | 10.0% |
| !! | AATTGAATTATGAATCAATT+TGG | + | chr7.2:71549898-71549917 | MS.gene99832:intron | 15.0% |
| !! | ATTGAATTATGAATCAATTT+GGG | + | chr7.2:71549899-71549918 | MS.gene99832:intron | 15.0% |
| !! | GATTTATATTTGCATAATTA+GGG | + | chr7.2:71549163-71549182 | MS.gene99832:intron | 15.0% |
| !! | TAATTCAATTTGATGAAATT+TGG | - | chr7.2:71549888-71549907 | None:intergenic | 15.0% |
| !! | TGATTTATATTTGCATAATT+AGG | + | chr7.2:71549162-71549181 | MS.gene99832:intron | 15.0% |
| !!! | ATTAATTTTTAGGGATTTTT+AGG | + | chr7.2:71549489-71549508 | MS.gene99832:intron | 15.0% |
| !!! | CAATTTTTACTCATTTTTTA+TGG | + | chr7.2:71548973-71548992 | MS.gene99832:intron | 15.0% |
| !!! | CATATTTTACACATTTTTTA+TGG | + | chr7.2:71548883-71548902 | MS.gene99832:intron | 15.0% |
| !! | AAAGAACAATTGATTATAGA+AGG | - | chr7.2:71550865-71550884 | None:intergenic | 20.0% |
| !! | ATAGAGTTGAAAATTGAAAT+TGG | + | chr7.2:71549301-71549320 | MS.gene99832:intron | 20.0% |
| !! | ATTCAGAAAATAATTGCAAA+AGG | - | chr7.2:71551190-71551209 | None:intergenic | 20.0% |
| !! | CATTTCTTTAAATATTTCGA+GGG | + | chr7.2:71550117-71550136 | MS.gene99832:intron | 20.0% |
| !! | CTATAGTTATGAAAAACAAA+TGG | - | chr7.2:71551463-71551482 | None:intergenic | 20.0% |
| !! | CTCATCCAATATTAATAAAT+CGG | - | chr7.2:71551740-71551759 | None:intergenic | 20.0% |
| !! | CTTGAAATGATTTAAGAAAA+TGG | + | chr7.2:71549744-71549763 | MS.gene99832:intron | 20.0% |
| !! | TATGTATATGTAATGTCAAA+AGG | - | chr7.2:71551385-71551404 | None:intergenic | 20.0% |
| !! | TCACTAAAAAGTAAAAAAGA+TGG | - | chr7.2:71550409-71550428 | None:intergenic | 20.0% |
| !! | TCATCCAATATTAATAAATC+GGG | - | chr7.2:71551739-71551758 | None:intergenic | 20.0% |
| !! | TCATTTCTTTAAATATTTCG+AGG | + | chr7.2:71550116-71550135 | MS.gene99832:intron | 20.0% |
| !! | TCGAAATATTTAAAGAAATG+AGG | - | chr7.2:71550117-71550136 | None:intergenic | 20.0% |
| !! | TCTTAACATTCAAATATTCT+TGG | + | chr7.2:71551057-71551076 | MS.gene99832:intron | 20.0% |
| !! | TGAGTAACAATAAATTTGTA+GGG | - | chr7.2:71550789-71550808 | None:intergenic | 20.0% |
| !! | TTAAAGAAATGAGGATAAAT+TGG | - | chr7.2:71550108-71550127 | None:intergenic | 20.0% |
| !! | TTGAGTAACAATAAATTTGT+AGG | - | chr7.2:71550790-71550809 | None:intergenic | 20.0% |
| !!! | AATAAATAATACCTTTTCTC+TGG | - | chr7.2:71549441-71549460 | None:intergenic | 20.0% |
| !!! | ATTAGAGATAAGTTTTTCAT+CGG | + | chr7.2:71550987-71551006 | MS.gene99832:intron | 20.0% |
| !!! | ATTGTCATGTTTTTTGATTT+AGG | + | chr7.2:71549347-71549366 | MS.gene99832:intron | 20.0% |
| !!! | CATTTGTTTTTCATAACTAT+AGG | + | chr7.2:71551461-71551480 | MS.gene99832:intron | 20.0% |
| ! | AAATAATTGCAAAAGGCTAA+TGG | - | chr7.2:71551183-71551202 | None:intergenic | 25.0% |
| ! | AATCCCCGATTTATTAATAT+TGG | + | chr7.2:71551732-71551751 | MS.gene99832:CDS | 25.0% |
| ! | AGTAGTATATTTGCATGATT+AGG | + | chr7.2:71549274-71549293 | MS.gene99832:intron | 25.0% |
| ! | ATGATTGAAATCAAATGTGT+AGG | + | chr7.2:71549768-71549787 | MS.gene99832:intron | 25.0% |
| ! | CATCCAATATTAATAAATCG+GGG | - | chr7.2:71551738-71551757 | None:intergenic | 25.0% |
| ! | GAGTAACAATAAATTTGTAG+GGG | - | chr7.2:71550788-71550807 | None:intergenic | 25.0% |
| ! | GATTATAGAGTTGAAATTGA+AGG | + | chr7.2:71549185-71549204 | MS.gene99832:intron | 25.0% |
| ! | GTAGTATATTTGCATGATTA+GGG | + | chr7.2:71549275-71549294 | MS.gene99832:intron | 25.0% |
| ! | TCTATTCACATCCAAAAATA+CGG | + | chr7.2:71550547-71550566 | MS.gene99832:CDS | 25.0% |
| ! | TTTATTATACGGAATGCAAT+TGG | + | chr7.2:71549065-71549084 | MS.gene99832:intron | 25.0% |
| !! | TGTTTTTCATAACTATAGGT+TGG | + | chr7.2:71551465-71551484 | MS.gene99832:intron | 25.0% |
| !!! | AAACCTGTAAAAAGTGTTTA+GGG | - | chr7.2:71551090-71551109 | None:intergenic | 25.0% |
| !!! | ACATTTTTGGTAAAAGACAA+AGG | + | chr7.2:71550280-71550299 | MS.gene99832:intron | 25.0% |
| !!! | TGATTCAACTATTTTAAACC+AGG | - | chr7.2:71549993-71550012 | None:intergenic | 25.0% |
| AAATTAATCCAATTGTCGCT+TGG | - | chr7.2:71551686-71551705 | None:intergenic | 30.0% | |
| ACGAAGAATAGACATAGAAA+AGG | + | chr7.2:71550809-71550828 | MS.gene99832:intron | 30.0% | |
| ACTTACTAATTGTATTGCCA+AGG | - | chr7.2:71551556-71551575 | None:intergenic | 30.0% | |
| AGTTTATATTCATACCTCTC+TGG | - | chr7.2:71550643-71550662 | None:intergenic | 30.0% | |
| ATCTCTAAATCTCTACACAT+TGG | + | chr7.2:71551222-71551241 | MS.gene99832:intron | 30.0% | |
| ATTGGCATACAAAAATTCGT+AGG | - | chr7.2:71550090-71550109 | None:intergenic | 30.0% | |
| CAAAAACAAGCTAATAGAAC+TGG | - | chr7.2:71549864-71549883 | None:intergenic | 30.0% | |
| CGAAAACTTGAAACAGTTAT+TGG | - | chr7.2:71548842-71548861 | None:intergenic | 30.0% | |
| CTATTCACATCCAAAAATAC+GGG | + | chr7.2:71550548-71550567 | MS.gene99832:CDS | 30.0% | |
| GAACAATTGATTATAGAAGG+TGG | - | chr7.2:71550862-71550881 | None:intergenic | 30.0% | |
| GAGTTGAAAATTGAAATTGG+AGG | + | chr7.2:71549304-71549323 | MS.gene99832:intron | 30.0% | |
| GTGAAGTTTATTCATTTGAG+CGG | + | chr7.2:71549678-71549697 | MS.gene99832:intron | 30.0% | |
| GTTTGAAAAACTGAACTGAA+CGG | + | chr7.2:71549648-71549667 | MS.gene99832:intron | 30.0% | |
| TAACCAAACATGTAAACAAC+AGG | - | chr7.2:71550451-71550470 | None:intergenic | 30.0% | |
| TAATTCGATGTAAACACATG+TGG | - | chr7.2:71549553-71549572 | None:intergenic | 30.0% | |
| TATTCACATCCAAAAATACG+GGG | + | chr7.2:71550549-71550568 | MS.gene99832:CDS | 30.0% | |
| TCGTAGGAAAATTCATATTG+AGG | - | chr7.2:71550074-71550093 | None:intergenic | 30.0% | |
| TTAAAACGAAAAGAGACCAT+AGG | - | chr7.2:71550490-71550509 | None:intergenic | 30.0% | |
| ! | AACTATAGGTTGGATTAAGT+GGG | + | chr7.2:71551475-71551494 | MS.gene99832:intron | 30.0% |
| ! | AGTGTTTTACTTGAATCTGA+AGG | + | chr7.2:71551021-71551040 | MS.gene99832:intron | 30.0% |
| ! | ATTCCTGTTGTTTACATGTT+TGG | + | chr7.2:71550445-71550464 | MS.gene99832:intron | 30.0% |
| ! | ATTTTTCACTTCCAGAGAAA+AGG | + | chr7.2:71549427-71549446 | MS.gene99832:CDS | 30.0% |
| ! | TAACTATAGGTTGGATTAAG+TGG | + | chr7.2:71551474-71551493 | MS.gene99832:intron | 30.0% |
| ! | TGCTCGATGTTTTACATTTT+TGG | + | chr7.2:71550267-71550286 | MS.gene99832:intron | 30.0% |
| ! | TTGCAACACAATACTTTTGT+AGG | + | chr7.2:71550964-71550983 | MS.gene99832:intron | 30.0% |
| ! | TTTTTATCCATTTGTCAGAG+TGG | + | chr7.2:71551131-71551150 | MS.gene99832:intron | 30.0% |
| !! | GAAACCTGTAAAAAGTGTTT+AGG | - | chr7.2:71551091-71551110 | None:intergenic | 30.0% |
| !! | TGAATCAATTTGGGACATTT+TGG | + | chr7.2:71549908-71549927 | MS.gene99832:intron | 30.0% |
| !! | TGATTTTAAGAGAGACAACA+AGG | - | chr7.2:71550206-71550225 | None:intergenic | 30.0% |
| !!! | ACAGATTTTGAGATTCTTAG+TGG | + | chr7.2:71548913-71548932 | MS.gene99832:intron | 30.0% |
| !!! | TACTTGATGAAGTCACTTTT+GGG | + | chr7.2:71551278-71551297 | MS.gene99832:CDS | 30.0% |
| AAACATGAAGCAAAACCAAG+CGG | - | chr7.2:71551621-71551640 | None:intergenic | 35.0% | |
| AAAGGCTAATGGAAACAGTT+AGG | - | chr7.2:71551172-71551191 | None:intergenic | 35.0% | |
| AACTACTATCCTTTCGAATC+CGG | + | chr7.2:71550230-71550249 | MS.gene99832:intron | 35.0% | |
| AAGAAGCTACAATACGATTG+AGG | - | chr7.2:71548761-71548780 | None:intergenic | 35.0% | |
| AAGTTACTGTTAAGGGGATT+GGG | + | chr7.2:71550146-71550165 | MS.gene99832:intron | 35.0% | |
| AGACATAGAAAAGGTCACAA+GGG | + | chr7.2:71550818-71550837 | MS.gene99832:intron | 35.0% | |
| ATAGTTGAATCATGACTCTG+AGG | + | chr7.2:71550001-71550020 | MS.gene99832:intron | 35.0% | |
| ATGTGAATAGATCCAGATGT+TGG | - | chr7.2:71550538-71550557 | None:intergenic | 35.0% | |
| ATTATACGGAATGCAATTGG+AGG | + | chr7.2:71549068-71549087 | MS.gene99832:intron | 35.0% | |
| ATTATTGTCACTCCTACCTA+TGG | + | chr7.2:71550471-71550490 | MS.gene99832:intron | 35.0% | |
| GAAATCAAATGTGTAGGAGT+CGG | + | chr7.2:71549774-71549793 | MS.gene99832:intron | 35.0% | |
| GAGCATGTATATGTGTTAAC+CGG | - | chr7.2:71550252-71550271 | None:intergenic | 35.0% | |
| GGAATAAACAAACCAACATC+TGG | + | chr7.2:71550523-71550542 | MS.gene99832:CDS | 35.0% | |
| GGTTAACACATACACAGTTT+GGG | + | chr7.2:71550332-71550351 | MS.gene99832:intron | 35.0% | |
| GTAGTCGAAGTTACTGTTAA+GGG | + | chr7.2:71550139-71550158 | MS.gene99832:intron | 35.0% | |
| GTATCAGCAACAAAATACCT+AGG | - | chr7.2:71551256-71551275 | None:intergenic | 35.0% | |
| GTTACAGTTTCATGAATTCG+TGG | + | chr7.2:71549027-71549046 | MS.gene99832:intron | 35.0% | |
| TAAGAGAGAATCTTGCTCTA+GGG | + | chr7.2:71551329-71551348 | MS.gene99832:CDS | 35.0% | |
| TAGACATAGAAAAGGTCACA+AGG | + | chr7.2:71550817-71550836 | MS.gene99832:intron | 35.0% | |
| TAGTCGAAGTTACTGTTAAG+GGG | + | chr7.2:71550140-71550159 | MS.gene99832:intron | 35.0% | |
| TGACAACTAAAACATCTGAC+AGG | - | chr7.2:71551658-71551677 | None:intergenic | 35.0% | |
| TGGATTAAGTGGGATATCAT+TGG | + | chr7.2:71551485-71551504 | MS.gene99832:CDS | 35.0% | |
| TGGTTAACACATACACAGTT+TGG | + | chr7.2:71550331-71550350 | MS.gene99832:intron | 35.0% | |
| TTAAGAGAGAATCTTGCTCT+AGG | + | chr7.2:71551328-71551347 | MS.gene99832:CDS | 35.0% | |
| ! | CACAGTTTGGGTCTAATTTT+CGG | + | chr7.2:71550344-71550363 | MS.gene99832:intron | 35.0% |
| ! | TGATCATTACCCTTTTGTCT+TGG | - | chr7.2:71551307-71551326 | None:intergenic | 35.0% |
| !! | CGTTTTAAATAGCTTCTTGC+AGG | + | chr7.2:71550502-71550521 | MS.gene99832:intron | 35.0% |
| !! | CTACCCTAAACACTTTTTAC+AGG | + | chr7.2:71551084-71551103 | MS.gene99832:intron | 35.0% |
| !! | GTACTTGATGAAGTCACTTT+TGG | + | chr7.2:71551277-71551296 | MS.gene99832:CDS | 35.0% |
| !! | GTAGTGTTGATGTCATACAT+AGG | - | chr7.2:71549531-71549550 | None:intergenic | 35.0% |
| !! | TACTTACAAGCTCTGAAGTA+CGG | - | chr7.2:71549619-71549638 | None:intergenic | 35.0% |
| AACATGAAGCAAAACCAAGC+GGG | - | chr7.2:71551620-71551639 | None:intergenic | 40.0% | |
| AACGAAAAGAGACCATAGGT+AGG | - | chr7.2:71550486-71550505 | None:intergenic | 40.0% | |
| AAGAAGAAAGTGGTGGTTTG+AGG | - | chr7.2:71548718-71548737 | None:intergenic | 40.0% | |
| AAGGGTTCAGAAGATTGACT+TGG | - | chr7.2:71550586-71550605 | None:intergenic | 40.0% | |
| AAGTCAATCTTCTGAACCCT+TGG | + | chr7.2:71550585-71550604 | MS.gene99832:CDS | 40.0% | |
| AGACAACAAGGAGATACAAC+TGG | - | chr7.2:71550194-71550213 | None:intergenic | 40.0% | |
| AGTGAGGGAAAAGAAGAAAG+TGG | - | chr7.2:71548728-71548747 | None:intergenic | 40.0% | |
| ATCCAAAAATACGGGGATGA+TGG | + | chr7.2:71550556-71550575 | MS.gene99832:CDS | 40.0% | |
| ATGTGTTAACCGGATTCGAA+AGG | - | chr7.2:71550242-71550261 | None:intergenic | 40.0% | |
| ATGTTAGCTATCAACCACCA+GGG | + | chr7.2:71549376-71549395 | MS.gene99832:CDS | 40.0% | |
| ATTATCGGCATTAACGTGTC+CGG | + | chr7.2:71549590-71549609 | MS.gene99832:intron | 40.0% | |
| CAATACACCACTCTGACAAA+TGG | - | chr7.2:71551141-71551160 | None:intergenic | 40.0% | |
| CGTTCTTTCAATTTCGCTGT+TGG | + | chr7.2:71550760-71550779 | MS.gene99832:intron | 40.0% | |
| CTAATTGTATTGCCAAGGCA+AGG | - | chr7.2:71551551-71551570 | None:intergenic | 40.0% | |
| GAAGTTACTGTTAAGGGGAT+TGG | + | chr7.2:71550145-71550164 | MS.gene99832:intron | 40.0% | |
| GGATTAATAGAGGTAGCCAT+TGG | - | chr7.2:71548677-71548696 | None:intergenic | 40.0% | |
| GGTAGTCGAAGTTACTGTTA+AGG | + | chr7.2:71550138-71550157 | MS.gene99832:intron | 40.0% | |
| TACGTGTAGTAGCTCATATC+TGG | + | chr7.2:71550311-71550330 | MS.gene99832:intron | 40.0% | |
| TCCAAAAATACGGGGATGAT+GGG | + | chr7.2:71550557-71550576 | MS.gene99832:CDS | 40.0% | |
| TGGAAAAACAACTCTCTTGC+AGG | + | chr7.2:71550379-71550398 | MS.gene99832:CDS | 40.0% | |
| TTGAGGAAGTGAAAGGTGAT+CGG | - | chr7.2:71548701-71548720 | None:intergenic | 40.0% | |
| TTGCAGTTGTTTACCAAGTC+CGG | - | chr7.2:71551770-71551789 | None:intergenic | 40.0% | |
| ! | AGCGGTTAAATCGCAGTTTT+GGG | + | chr7.2:71549696-71549715 | MS.gene99832:intron | 40.0% |
| ! | ATTCATACCTCTCTGGAAAC+TGG | - | chr7.2:71550636-71550655 | None:intergenic | 40.0% |
| ! | GCTTCATGTTTTCACCTGAT+TGG | + | chr7.2:71551630-71551649 | MS.gene99832:intron | 40.0% |
| !!! | AAATCGCAGTTTTGGGTGTT+TGG | + | chr7.2:71549703-71549722 | MS.gene99832:intron | 40.0% |
| !!! | TTGATGAAGTCACTTTTGGG+TGG | + | chr7.2:71551281-71551300 | MS.gene99832:CDS | 40.0% |
| AAGAATCCTCACTCTCTCAG+TGG | + | chr7.2:71551510-71551529 | MS.gene99832:CDS | 45.0% | |
| AAGACAATACCGACCCTTTC+CGG | - | chr7.2:71550613-71550632 | None:intergenic | 45.0% | |
| ATATTGGATGAGCCTCTTGC+CGG | + | chr7.2:71551748-71551767 | MS.gene99832:CDS | 45.0% | |
| GAACTGGCACTTAAGAGTGA+AGG | - | chr7.2:71549848-71549867 | None:intergenic | 45.0% | |
| GAGGGAAAAGAAGAAAGTGG+TGG | - | chr7.2:71548725-71548744 | None:intergenic | 45.0% | |
| GATGTTAGCTATCAACCACC+AGG | + | chr7.2:71549375-71549394 | MS.gene99832:CDS | 45.0% | |
| GGACAAAACTGCGATCAAAC+AGG | - | chr7.2:71549972-71549991 | None:intergenic | 45.0% | |
| TCAGTCAACCAAGCGACAAT+TGG | + | chr7.2:71551675-71551694 | MS.gene99832:intron | 45.0% | |
| TGGTGGTTTGAGGAAGTGAA+AGG | - | chr7.2:71548708-71548727 | None:intergenic | 45.0% | |
| TTGTCTTCCAGTTTCCAGAG+AGG | + | chr7.2:71550626-71550645 | MS.gene99832:CDS | 45.0% | |
| TTTGGGTGGCCAAGACAAAA+GGG | + | chr7.2:71551295-71551314 | MS.gene99832:CDS | 45.0% | |
| ! | GAGCGGTTAAATCGCAGTTT+TGG | + | chr7.2:71549695-71549714 | MS.gene99832:intron | 45.0% |
| ! | GGTCTAATTTTCGGACAGAG+CGG | + | chr7.2:71550353-71550372 | MS.gene99832:CDS | 45.0% |
| ! | TCCCATCATCCCCGTATTTT+TGG | - | chr7.2:71550561-71550580 | None:intergenic | 45.0% |
| !! | AAGCTCTGAAGTACGGATAC+CGG | - | chr7.2:71549612-71549631 | None:intergenic | 45.0% |
| !! | ACACATTGGTGTTGCAACCT+AGG | + | chr7.2:71551236-71551255 | MS.gene99832:intron | 45.0% |
| !! | GGTGATCGGTGGATTAATAG+AGG | - | chr7.2:71548687-71548706 | None:intergenic | 45.0% |
| !! | GTTTGATCGCAGTTTTGTCC+TGG | + | chr7.2:71549972-71549991 | MS.gene99832:intron | 45.0% |
| !! | TTTTGGGTGGCCAAGACAAA+AGG | + | chr7.2:71551294-71551313 | MS.gene99832:CDS | 45.0% |
| !!! | TTTATTTTTTTAAAATTTTC+AGG | + | chr7.2:71551705-71551724 | MS.gene99832:intron | 5.0% |
| AAAATGCAGCCATACCCGCT+TGG | + | chr7.2:71551603-71551622 | MS.gene99832:intron | 50.0% | |
| AATCCTCACTCTCTCAGTGG+CGG | + | chr7.2:71551513-71551532 | MS.gene99832:CDS | 50.0% | |
| ACATCTGACAGGAGCCAATC+AGG | - | chr7.2:71551647-71551666 | None:intergenic | 50.0% | |
| AGAAGAGTAACTGCAGCGAG+TGG | - | chr7.2:71548795-71548814 | None:intergenic | 50.0% | |
| AGAAGCTTAAGCTCAGTCCC+TGG | - | chr7.2:71549396-71549415 | None:intergenic | 50.0% | |
| AGGAAGTGAAAGGTGATCGG+TGG | - | chr7.2:71548698-71548717 | None:intergenic | 50.0% | |
| AGGTGGTAAGCCTGAAACGT+TGG | - | chr7.2:71550845-71550864 | None:intergenic | 50.0% | |
| GAAGCAAAACCAAGCGGGTA+TGG | - | chr7.2:71551615-71551634 | None:intergenic | 50.0% | |
| TCACAAGGGACCAACGTTTC+AGG | + | chr7.2:71550832-71550851 | MS.gene99832:intron | 50.0% | |
| TGAGGAGAGCGAGAAAGTGA+GGG | - | chr7.2:71548743-71548762 | None:intergenic | 50.0% | |
| TGTTTACCAAGTCCGGCAAG+AGG | - | chr7.2:71551763-71551782 | None:intergenic | 50.0% | |
| TTACAAACGTCGCCTTGCCT+TGG | + | chr7.2:71551536-71551555 | MS.gene99832:CDS | 50.0% | |
| TTGAGGAGAGCGAGAAAGTG+AGG | - | chr7.2:71548744-71548763 | None:intergenic | 50.0% | |
| ! | ATCTTCTGAACCCTTGGTGC+CGG | + | chr7.2:71550591-71550610 | MS.gene99832:CDS | 50.0% |
| ! | ATTTTCGGACAGAGCGGAAG+TGG | + | chr7.2:71550359-71550378 | MS.gene99832:CDS | 50.0% |
| ! | GGTCTCAACTCTTGCCGATT+TGG | + | chr7.2:71550022-71550041 | MS.gene99832:intron | 50.0% |
| AGCTTAAGCTCAGTCCCTGG+TGG | - | chr7.2:71549393-71549412 | None:intergenic | 55.0% | |
| CTACCCAGTGAATAGCCCTC+TGG | - | chr7.2:71551357-71551376 | None:intergenic | 55.0% | |
| GCTCCAGAGGGCTATTCACT+GGG | + | chr7.2:71551351-71551370 | MS.gene99832:CDS | 55.0% | |
| GTAACTGCAGCGAGTGGTTG+AGG | - | chr7.2:71548789-71548808 | None:intergenic | 55.0% | |
| TAACCGCCACTGAGAGAGTG+AGG | - | chr7.2:71551519-71551538 | None:intergenic | 55.0% | |
| !! | ATCTTGCTCTAGGGCTCCAG+AGG | + | chr7.2:71551338-71551357 | MS.gene99832:CDS | 55.0% |
| !! | TCTTGCTCTAGGGCTCCAGA+GGG | + | chr7.2:71551339-71551358 | MS.gene99832:CDS | 55.0% |
| !! | TGAACCCTTGGTGCCGGAAA+GGG | + | chr7.2:71550597-71550616 | MS.gene99832:CDS | 55.0% |
| GATGAGCCTCTTGCCGGACT+TGG | + | chr7.2:71551754-71551773 | MS.gene99832:CDS | 60.0% | |
| GGCTCCAGAGGGCTATTCAC+TGG | + | chr7.2:71551350-71551369 | MS.gene99832:CDS | 60.0% | |
| !! | CTGAACCCTTGGTGCCGGAA+AGG | + | chr7.2:71550596-71550615 | MS.gene99832:CDS | 60.0% |
| ACCGACCCTTTCCGGCACCA+AGG | - | chr7.2:71550605-71550624 | None:intergenic | 65.0% | |
| CCGACCCTTTCCGGCACCAA+GGG | - | chr7.2:71550604-71550623 | None:intergenic | 65.0% | |
| !! | CCCTTGGTGCCGGAAAGGGT+CGG | + | chr7.2:71550601-71550620 | MS.gene99832:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 71548671 | 71551807 | 71548671 | ID=MS.gene99832 |
| chr7.2 | mRNA | 71548671 | 71551807 | 71548671 | ID=MS.gene99832.t1;Parent=MS.gene99832 |
| chr7.2 | exon | 71548671 | 71548820 | 71548671 | ID=MS.gene99832.t1.exon1;Parent=MS.gene99832.t1 |
| chr7.2 | CDS | 71548671 | 71548820 | 71548671 | ID=cds.MS.gene99832.t1;Parent=MS.gene99832.t1 |
| chr7.2 | exon | 71549369 | 71549448 | 71549369 | ID=MS.gene99832.t1.exon2;Parent=MS.gene99832.t1 |
| chr7.2 | CDS | 71549369 | 71549448 | 71549369 | ID=cds.MS.gene99832.t1;Parent=MS.gene99832.t1 |
| chr7.2 | exon | 71550349 | 71550400 | 71550349 | ID=MS.gene99832.t1.exon3;Parent=MS.gene99832.t1 |
| chr7.2 | CDS | 71550349 | 71550400 | 71550349 | ID=cds.MS.gene99832.t1;Parent=MS.gene99832.t1 |
| chr7.2 | exon | 71550514 | 71550647 | 71550514 | ID=MS.gene99832.t1.exon4;Parent=MS.gene99832.t1 |
| chr7.2 | CDS | 71550514 | 71550647 | 71550514 | ID=cds.MS.gene99832.t1;Parent=MS.gene99832.t1 |
| chr7.2 | exon | 71551258 | 71551372 | 71551258 | ID=MS.gene99832.t1.exon5;Parent=MS.gene99832.t1 |
| chr7.2 | CDS | 71551258 | 71551372 | 71551258 | ID=cds.MS.gene99832.t1;Parent=MS.gene99832.t1 |
| chr7.2 | exon | 71551483 | 71551569 | 71551483 | ID=MS.gene99832.t1.exon6;Parent=MS.gene99832.t1 |
| chr7.2 | CDS | 71551483 | 71551569 | 71551483 | ID=cds.MS.gene99832.t1;Parent=MS.gene99832.t1 |
| chr7.2 | exon | 71551727 | 71551807 | 71551727 | ID=MS.gene99832.t1.exon7;Parent=MS.gene99832.t1 |
| chr7.2 | CDS | 71551727 | 71551807 | 71551727 | ID=cds.MS.gene99832.t1;Parent=MS.gene99832.t1 |
| Gene Sequence |
| Protein sequence |
