AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004958.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004958.01.T01 MTR_1g090400 92.958 355 15 3 32 378 17 369 0.0 641
MsG0180004958.01.T01 MTR_7g106500 53.374 163 67 2 224 377 116 278 2.55e-56 186
MsG0180004958.01.T01 MTR_7g104720 43.627 204 109 4 176 377 205 404 7.43e-48 167
MsG0180004958.01.T01 MTR_5g083110 48.667 150 75 2 229 377 90 238 3.13e-44 153
MsG0180004958.01.T01 MTR_8g099665 43.820 178 89 4 210 377 191 367 2.70e-42 152
MsG0180004958.01.T01 MTR_1g051180 44.099 161 79 2 228 377 203 363 1.53e-40 147
MsG0180004958.01.T01 MTR_3g017490 45.638 149 79 2 232 378 113 261 3.59e-39 141
MsG0180004958.01.T01 MTR_8g038440 44.737 152 79 2 231 377 103 254 8.82e-38 137
MsG0180004958.01.T01 MTR_8g106900 45.342 161 81 3 224 377 113 273 1.11e-37 137
MsG0180004958.01.T01 MTR_7g090230 42.384 151 84 2 230 377 274 424 1.07e-35 135
MsG0180004958.01.T01 MTR_5g072400 44.295 149 81 2 230 377 106 253 1.36e-35 131
MsG0180004958.01.T01 MTR_3g465550 44.828 145 77 2 230 372 84 227 3.79e-35 129
MsG0180004958.01.T01 MTR_3g071510 40.690 145 84 2 234 377 91 234 1.69e-34 127
MsG0180004958.01.T01 MTR_7g010090 37.838 222 107 6 177 377 220 431 5.89e-31 122
MsG0180004958.01.T01 MTR_6g011640 30.627 271 134 9 147 377 140 396 2.66e-27 112
MsG0180004958.01.T01 MTR_3g030520 38.217 157 77 4 241 377 142 298 9.85e-22 94.7
MsG0180004958.01.T01 MTR_7g079015 38.462 104 54 3 274 367 1 104 1.81e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004958.01.T01 AT5G01420 38.391 435 160 14 16 377 1 400 5.48e-75 238
MsG0180004958.01.T01 AT5G06470 50.617 162 70 2 224 377 79 238 7.53e-57 186
MsG0180004958.01.T01 AT5G03870 37.654 324 160 9 83 377 73 383 3.77e-51 176
MsG0180004958.01.T01 AT3G11773 54.225 142 64 1 236 377 9 149 3.13e-49 163
MsG0180004958.01.T01 AT4G10630 47.024 168 75 3 224 377 166 333 4.22e-48 166
MsG0180004958.01.T01 AT1G64500 43.195 169 86 3 219 377 197 365 3.44e-41 149
MsG0180004958.01.T01 AT5G58530 43.396 159 79 3 230 378 109 266 2.49e-36 133
MsG0180004958.01.T01 AT5G13810 44.000 150 82 2 230 377 123 272 2.50e-36 133
MsG0180004958.01.T01 AT3G11773 43.312 157 65 2 221 377 67 199 1.40e-34 127
MsG0180004958.01.T01 AT3G57070 42.105 152 84 2 230 377 264 415 3.10e-33 128
MsG0180004958.01.T01 AT2G41330 45.517 145 76 2 236 377 256 400 7.11e-33 127
MsG0180004958.01.T01 AT1G32760 44.118 170 85 4 218 377 144 313 3.35e-32 123
MsG0180004958.01.T01 AT5G39865 43.373 166 74 3 232 377 223 388 7.07e-32 124
MsG0180004958.01.T01 AT3G28850 42.135 178 71 5 232 377 249 426 1.28e-28 116

Find 68 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGATGCTTGTGGTGGTTTA+AGG 0.148710 1:+84956310 MsG0180004958.01.T01:CDS
TCTGATACATCAATAATTTC+TGG 0.214591 1:-84955559 None:intergenic
TAATGGTAGCCATAAGATTT+TGG 0.260789 1:+84956353 MsG0180004958.01.T01:CDS
AATGGGTTTGGTGAAATCTT+TGG 0.279170 1:-84955475 None:intergenic
GAGCTAATACTGATAGAAAA+AGG 0.313758 1:+84955752 MsG0180004958.01.T01:CDS
TTCTACACAACATCGCTTAG+AGG 0.320109 1:+84956024 MsG0180004958.01.T01:CDS
TTCTCCATCTAGCCACAATA+TGG 0.324101 1:-84956435 None:intergenic
GTTCCAATGGATTGTTCTAA+TGG 0.327957 1:+84956282 MsG0180004958.01.T01:CDS
ATCGATGCACAAGGAGTATA+AGG 0.339180 1:+84956128 MsG0180004958.01.T01:CDS
GGATGAATTGTGGAGCCTTT+TGG 0.348687 1:+84956149 MsG0180004958.01.T01:CDS
AAATGAAGAAGAAATGGATT+TGG 0.348854 1:+84955603 MsG0180004958.01.T01:CDS
CGGAGACCGGATTTGAATTC+CGG 0.349959 1:+84955811 MsG0180004958.01.T01:CDS
TGAAGAAAATGAAGAAGAAA+TGG 0.363113 1:+84955597 MsG0180004958.01.T01:CDS
TCGAACGCAGCGAGCAGTTT+CGG 0.363214 1:-84955847 None:intergenic
GTTGTTTCGGTTTCGAAGAT+TGG 0.369695 1:+84955661 MsG0180004958.01.T01:CDS
TCTCGAGAAACAAATGGGTT+TGG 0.383676 1:-84955487 None:intergenic
CTTCAGGTAAAATCCATTGA+TGG 0.409719 1:+84955436 MsG0180004958.01.T01:CDS
AGAGTGATAGTTTGTCGTTC+CGG 0.410128 1:+84955791 MsG0180004958.01.T01:CDS
TTTGTTAAGGGAAGATATAT+AGG 0.419790 1:+84956198 MsG0180004958.01.T01:CDS
AATGCCAGAACGTATTCTTC+AGG 0.424308 1:+84955420 MsG0180004958.01.T01:CDS
TAGTCACAAAGGTGTTGTTT+CGG 0.428450 1:+84955648 MsG0180004958.01.T01:CDS
GAAAAGTTGCGAGAATTTGC+AGG 0.429540 1:+84955522 MsG0180004958.01.T01:CDS
AGAAGTTGAAGTTGACCCTT+TGG 0.437150 1:+84955954 MsG0180004958.01.T01:CDS
TTTCTATCAGTATTAGCTCT+TGG 0.445564 1:-84955748 None:intergenic
GAAACTGCTCGCTGCGTTCG+AGG 0.455728 1:+84955849 MsG0180004958.01.T01:CDS
TCTATAAGCATATCTTCTAA+AGG 0.455737 1:+84953252 MsG0180004958.01.T01:CDS
GAAGCTCAAATCAATCAAAC+AGG 0.457778 1:+84955387 MsG0180004958.01.T01:CDS
TAGTTTGTCGTTCCGGAGAC+CGG 0.460484 1:+84955798 MsG0180004958.01.T01:CDS
CTATAAGCATATCTTCTAAA+GGG 0.461639 1:+84953253 MsG0180004958.01.T01:CDS
TTTACCTGAAGAATACGTTC+TGG 0.475307 1:-84955424 None:intergenic
TGTTTGTTGTGTAATGAGAA+TGG 0.484610 1:+84956399 MsG0180004958.01.T01:CDS
AAAATCTGCATACCCATCAA+TGG 0.498345 1:-84955449 None:intergenic
ACATCAATAATTTCTGGTTG+TGG 0.503951 1:-84955553 None:intergenic
AATTCTTGAAGGGGTTCCAA+TGG 0.506549 1:+84956269 MsG0180004958.01.T01:CDS
AAGCTACCGGAATTCAAATC+CGG 0.506585 1:-84955817 None:intergenic
GTTTATCATAGGTTCGGTGT+TGG 0.506764 1:+84953225 None:intergenic
GTGTAATGAGAATGGATTGA+TGG 0.517662 1:+84956407 MsG0180004958.01.T01:CDS
AGTTGAAGAAAATTCTTGAA+GGG 0.524425 1:+84956259 MsG0180004958.01.T01:CDS
CGGAATTCAAATCCGGTCTC+CGG 0.526856 1:-84955810 None:intergenic
AAGTTGAAGAAAATTCTTGA+AGG 0.526961 1:+84956258 MsG0180004958.01.T01:CDS
AACTATCACTCTCAGAAAGA+AGG 0.527002 1:-84955780 None:intergenic
TTCAGGTAAAATCCATTGAT+GGG 0.528869 1:+84955437 MsG0180004958.01.T01:CDS
GCACAACTTTCTCACCCAAA+AGG 0.528869 1:-84956164 None:intergenic
GTTGAAGAAAATTCTTGAAG+GGG 0.541357 1:+84956260 MsG0180004958.01.T01:CDS
GTGAGAAAGTTGTGCCTCCA+AGG 0.543640 1:+84956172 MsG0180004958.01.T01:CDS
TGCGTTCGAGGAAGCTGTGA+AGG 0.544838 1:+84955861 MsG0180004958.01.T01:CDS
TCTCTTCAAATAACGCCAAA+GGG 0.545226 1:-84955969 None:intergenic
AAGTGTCCACCAGGTGGTGA+TGG 0.545637 1:+84955991 MsG0180004958.01.T01:CDS
TTCTCTTCAAATAACGCCAA+AGG 0.551664 1:-84955970 None:intergenic
AATGGACCTTGTGATGCTTG+TGG 0.579467 1:+84956300 MsG0180004958.01.T01:CDS
TTTCGGATCAAATAAGCTAC+CGG 0.582175 1:-84955830 None:intergenic
GGTCCATTAGAACAATCCAT+TGG 0.585251 1:-84956285 None:intergenic
TTGATGGTGTGTCCATATTG+TGG 0.585754 1:+84956423 MsG0180004958.01.T01:CDS
TAAGGCTTTGTATCTCGAGA+GGG 0.594658 1:+84956101 MsG0180004958.01.T01:CDS
GGACCTTGTGATGCTTGTGG+TGG 0.596799 1:+84956303 MsG0180004958.01.T01:CDS
TTAAGGCTTTGTATCTCGAG+AGG 0.597422 1:+84956100 MsG0180004958.01.T01:CDS
AAAGAGAATATTAGTCACAA+AGG 0.597862 1:+84955637 MsG0180004958.01.T01:CDS
ATCACAGTACCATCACCACC+TGG 0.624770 1:-84956000 None:intergenic
TTTGAAGAGAAGTGTCCACC+AGG 0.629966 1:+84955982 MsG0180004958.01.T01:CDS
AGGAGTATAAGGATGAATTG+TGG 0.635001 1:+84956139 MsG0180004958.01.T01:CDS
TTAGCTCTTGGTAACAGTGG+TGG 0.637058 1:-84955736 None:intergenic
AGTTGAGGAAGAGTTTACAA+AGG 0.642245 1:+84955900 MsG0180004958.01.T01:CDS
GTATTAGCTCTTGGTAACAG+TGG 0.650696 1:-84955739 None:intergenic
AAACCACCACAAGCATCACA+AGG 0.679920 1:-84956306 None:intergenic
ACAGTACCATCACCACCTGG+TGG 0.680584 1:-84955997 None:intergenic
GAGGGATATATCGATGCACA+AGG 0.688067 1:+84956119 MsG0180004958.01.T01:CDS
AGGAAGCTGTGAAGGAACAG+AGG 0.688483 1:+84955869 MsG0180004958.01.T01:CDS
GAAGAGAAGTGTCCACCAGG+TGG 0.706764 1:+84955985 MsG0180004958.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAAAATAACAAATAAAAT+TGG - Chr1:84955305-84955324 None:intergenic 10.0%
!! GTAAAATAACAAATAAAATT+GGG - Chr1:84955304-84955323 None:intergenic 10.0%
!! TAATTATTTATTATTTGGAT+TGG - Chr1:84953553-84953572 None:intergenic 10.0%
!!! TTGGTTTTAAAAATATAATT+TGG - Chr1:84953534-84953553 None:intergenic 10.0%
!! AATACAAATTTGTGAAATTA+TGG + Chr1:84954498-84954517 MsG0180004958.01.T01:intron 15.0%
!! AGGAATAATATTACTAAAAT+AGG - Chr1:84954188-84954207 None:intergenic 15.0%
!! ATTACATTACCATTAATAAA+AGG - Chr1:84953444-84953463 None:intergenic 15.0%
!! GGAATAATATTACTAAAATA+GGG - Chr1:84954187-84954206 None:intergenic 15.0%
!!! AACTTTTTCTATATGAATTA+AGG - Chr1:84953924-84953943 None:intergenic 15.0%
!!! AATGTATTTGATCTAATTTT+AGG + Chr1:84954757-84954776 MsG0180004958.01.T01:intron 15.0%
!!! AATTAAGAAGTATTTTATGT+TGG - Chr1:84954248-84954267 None:intergenic 15.0%
!!! AATTTTGATTTTTTTTGCAT+CGG - Chr1:84953956-84953975 None:intergenic 15.0%
!!! CTTTTTGACAATTTATTTTT+GGG + Chr1:84954956-84954975 MsG0180004958.01.T01:intron 15.0%
!!! TCTTTTTGACAATTTATTTT+TGG + Chr1:84954955-84954974 MsG0180004958.01.T01:intron 15.0%
!! AAATGAAGTATAAATTGATC+TGG - Chr1:84954806-84954825 None:intergenic 20.0%
!! CAAAATTAAATTGATACTGT+AGG + Chr1:84953969-84953988 MsG0180004958.01.T01:intron 20.0%
!! CATGTAAATGTTTCAAAATA+AGG - Chr1:84954843-84954862 None:intergenic 20.0%
!! TTTAGGAAATAAAATTACTG+TGG - Chr1:84953701-84953720 None:intergenic 20.0%
!!! AACGTTTTGAATAAAAAATG+TGG + Chr1:84955148-84955167 MsG0180004958.01.T01:intron 20.0%
!!! AAGGTCATTTTTTTCTTTTT+GGG - Chr1:84955055-84955074 None:intergenic 20.0%
!!! ATTTTGAAACATTTACATGT+GGG + Chr1:84954844-84954863 MsG0180004958.01.T01:intron 20.0%
!!! CATTTTTTATTCAAAACGTT+AGG - Chr1:84955148-84955167 None:intergenic 20.0%
!!! GTTTCTTTTACAAAGTTTTA+AGG + Chr1:84956083-84956102 MsG0180004958.01.T01:CDS 20.0%
!!! TATTTTACTAATAATTCCGT+TGG + Chr1:84955316-84955335 MsG0180004958.01.T01:intron 20.0%
!!! TATTTTGAAACATTTACATG+TGG + Chr1:84954843-84954862 MsG0180004958.01.T01:intron 20.0%
! AAAGAGAATATTAGTCACAA+AGG + Chr1:84955637-84955656 MsG0180004958.01.T01:CDS 25.0%
! AAGTTGAAGAAAATTCTTGA+AGG + Chr1:84956258-84956277 MsG0180004958.01.T01:CDS 25.0%
! AGTTGAAGAAAATTCTTGAA+GGG + Chr1:84956259-84956278 MsG0180004958.01.T01:CDS 25.0%
! AGTTTGAAAAATAGAGAACA+TGG + Chr1:84954432-84954451 MsG0180004958.01.T01:intron 25.0%
! ATGAAAAAACTAACAACAGA+TGG - Chr1:84954396-84954415 None:intergenic 25.0%
! ATTAATTAGATCTATGCTAG+TGG + Chr1:84953841-84953860 MsG0180004958.01.T01:intron 25.0%
! CTATAAGCATATCTTCTAAA+GGG + Chr1:84953253-84953272 MsG0180004958.01.T01:CDS 25.0%
! TCTATAAGCATATCTTCTAA+AGG + Chr1:84953252-84953271 MsG0180004958.01.T01:CDS 25.0%
! TCTGATACATCAATAATTTC+TGG - Chr1:84955562-84955581 None:intergenic 25.0%
! TGAAGAAAATGAAGAAGAAA+TGG + Chr1:84955597-84955616 MsG0180004958.01.T01:CDS 25.0%
! TTATTTCCTAAAACCTTATG+AGG + Chr1:84953709-84953728 MsG0180004958.01.T01:intron 25.0%
! TTTGTTAAGGGAAGATATAT+AGG + Chr1:84956198-84956217 MsG0180004958.01.T01:CDS 25.0%
!! AAATGAAGAAGAAATGGATT+TGG + Chr1:84955603-84955622 MsG0180004958.01.T01:CDS 25.0%
!! ATATTTTATTGCTCTCAACT+TGG + Chr1:84953628-84953647 MsG0180004958.01.T01:intron 25.0%
!! CTTTGTTCACCTTTTATTAA+TGG + Chr1:84953432-84953451 MsG0180004958.01.T01:intron 25.0%
!!! CAGCTCTTTTTTTTTTTTGA+AGG - Chr1:84955074-84955093 None:intergenic 25.0%
!!! GAAGGTCATTTTTTTCTTTT+TGG - Chr1:84955056-84955075 None:intergenic 25.0%
!!! GTAAAAGAAACCGAATTTTT+TGG - Chr1:84956074-84956093 None:intergenic 25.0%
!!! GTTTTGAATAAAAAATGTGG+TGG + Chr1:84955151-84955170 MsG0180004958.01.T01:intron 25.0%
!!! TGAGTGTGATATTTTTGTTT+GGG - Chr1:84955240-84955259 None:intergenic 25.0%
AAGCATAGCGTTATATGAAT+TGG - Chr1:84953817-84953836 None:intergenic 30.0%
ATTAATCTAAACTGAACACG+AGG + Chr1:84955097-84955116 MsG0180004958.01.T01:intron 30.0%
CGATGAAAATTTCAATGGTT+CGG + Chr1:84954631-84954650 MsG0180004958.01.T01:intron 30.0%
GAGCTAATACTGATAGAAAA+AGG + Chr1:84955752-84955771 MsG0180004958.01.T01:CDS 30.0%
GTTGAAGAAAATTCTTGAAG+GGG + Chr1:84956260-84956279 MsG0180004958.01.T01:CDS 30.0%
TATTACTAAAATAGGGAGTG+AGG - Chr1:84954180-84954199 None:intergenic 30.0%
TCTGTGTGTGTATATATATG+TGG + Chr1:84954882-84954901 MsG0180004958.01.T01:intron 30.0%
TTCAGGTAAAATCCATTGAT+GGG + Chr1:84955437-84955456 MsG0180004958.01.T01:CDS 30.0%
! CATTTTCTCGAGAAACAAAT+GGG - Chr1:84955495-84955514 None:intergenic 30.0%
! CGAACCATTGAAATTTTCAT+CGG - Chr1:84954633-84954652 None:intergenic 30.0%
! TAATGGTAGCCATAAGATTT+TGG + Chr1:84956353-84956372 MsG0180004958.01.T01:CDS 30.0%
! TCATTTTCTCGAGAAACAAA+TGG - Chr1:84955496-84955515 None:intergenic 30.0%
! TTTCTATCAGTATTAGCTCT+TGG - Chr1:84955751-84955770 None:intergenic 30.0%
!! AAAAAGTATCCGATCTTGTT+TGG + Chr1:84954049-84954068 MsG0180004958.01.T01:intron 30.0%
!! AAGTTAGTATGTTGAGTTGA+AGG - Chr1:84953415-84953434 None:intergenic 30.0%
!! ACATCAATAATTTCTGGTTG+TGG - Chr1:84955556-84955575 None:intergenic 30.0%
!! CATTGAAATTTTCATCGGTT+CGG - Chr1:84954628-84954647 None:intergenic 30.0%
!! GTGAGTGTGATATTTTTGTT+TGG - Chr1:84955241-84955260 None:intergenic 30.0%
!! GTGATGTGTTTTAAGTGTAA+TGG + Chr1:84956336-84956355 MsG0180004958.01.T01:CDS 30.0%
!! TGTTTGTTGTGTAATGAGAA+TGG + Chr1:84956399-84956418 MsG0180004958.01.T01:CDS 30.0%
!!! AACAAGATCGGATACTTTTT+TGG - Chr1:84954049-84954068 None:intergenic 30.0%
!!! GATACTTTTTTGGTTTGGTT+CGG - Chr1:84954039-84954058 None:intergenic 30.0%
!!! TTTGGTTCGGTTTGAATTTT+CGG - Chr1:84954026-84954045 None:intergenic 30.0%
AAAATCTGCATACCCATCAA+TGG - Chr1:84955452-84955471 None:intergenic 35.0%
AACTATCACTCTCAGAAAGA+AGG - Chr1:84955783-84955802 None:intergenic 35.0%
AATTGGGTTTGCAGTGAAAT+AGG - Chr1:84955288-84955307 None:intergenic 35.0%
AGAAACCAAACCAAACTAGT+CGG - Chr1:84954575-84954594 None:intergenic 35.0%
AGAACCAAACCAAACTTGAT+CGG - Chr1:84954107-84954126 None:intergenic 35.0%
AGAATGATGAGTGACAACAA+AGG - Chr1:84955199-84955218 None:intergenic 35.0%
AGTTGAGGAAGAGTTTACAA+AGG + Chr1:84955900-84955919 MsG0180004958.01.T01:CDS 35.0%
ATCTCACAGGGAAAAAATGA+AGG + Chr1:84955342-84955361 MsG0180004958.01.T01:intron 35.0%
ATTGGGTTTGCAGTGAAATA+GGG - Chr1:84955287-84955306 None:intergenic 35.0%
CGAACCGATGAAAATTTCAA+TGG + Chr1:84954626-84954645 MsG0180004958.01.T01:intron 35.0%
CTTCAGGTAAAATCCATTGA+TGG + Chr1:84955436-84955455 MsG0180004958.01.T01:CDS 35.0%
GAAAAAATGAAGGGAGTGAA+AGG + Chr1:84955352-84955371 MsG0180004958.01.T01:CDS 35.0%
GAAGCTCAAATCAATCAAAC+AGG + Chr1:84955387-84955406 MsG0180004958.01.T01:CDS 35.0%
GAATGATGAGTGACAACAAA+GGG - Chr1:84955198-84955217 None:intergenic 35.0%
GGTGTACACACTATCAATTA+GGG - Chr1:84954700-84954719 None:intergenic 35.0%
GTGTACACACTATCAATTAG+GGG - Chr1:84954699-84954718 None:intergenic 35.0%
TAAACCGATCAAGTTTGGTT+TGG + Chr1:84954100-84954119 MsG0180004958.01.T01:intron 35.0%
TAAACGAAATAGAGTGTGAG+TGG - Chr1:84954303-84954322 None:intergenic 35.0%
TCGAAGACTGCCAAAAAATT+CGG + Chr1:84956061-84956080 MsG0180004958.01.T01:CDS 35.0%
TCTCACAGGGAAAAAATGAA+GGG + Chr1:84955343-84955362 MsG0180004958.01.T01:intron 35.0%
TCTCTTCAAATAACGCCAAA+GGG - Chr1:84955972-84955991 None:intergenic 35.0%
TTCCTAAAACCTTATGAGGT+TGG + Chr1:84953713-84953732 MsG0180004958.01.T01:intron 35.0%
TTCTCTTCAAATAACGCCAA+AGG - Chr1:84955973-84955992 None:intergenic 35.0%
TTTACCTGAAGAATACGTTC+TGG - Chr1:84955427-84955446 None:intergenic 35.0%
TTTCGGATCAAATAAGCTAC+CGG - Chr1:84955833-84955852 None:intergenic 35.0%
! AAACCAAACTTGATCGGTTT+AGG - Chr1:84954101-84954120 None:intergenic 35.0%
! ACTATCAATTAGGGGTGTAA+GGG - Chr1:84954691-84954710 None:intergenic 35.0%
! AGGAGTATAAGGATGAATTG+TGG + Chr1:84956139-84956158 MsG0180004958.01.T01:CDS 35.0%
! CCTTTTCAGCCAAAATCTTA+TGG - Chr1:84956365-84956384 None:intergenic 35.0%
! TACCAACCTCATAAGGTTTT+AGG - Chr1:84953718-84953737 None:intergenic 35.0%
! TTTGGATCGATTCTGTTGAT+CGG - Chr1:84954552-84954571 None:intergenic 35.0%
!! AATGGGTTTGGTGAAATCTT+TGG - Chr1:84955478-84955497 None:intergenic 35.0%
!! GTGTAATGAGAATGGATTGA+TGG + Chr1:84956407-84956426 MsG0180004958.01.T01:CDS 35.0%
!! GTTCCAATGGATTGTTCTAA+TGG + Chr1:84956282-84956301 MsG0180004958.01.T01:CDS 35.0%
!! TAGTCACAAAGGTGTTGTTT+CGG + Chr1:84955648-84955667 MsG0180004958.01.T01:CDS 35.0%
!!! AAATTTTCATCGGTTCGGTT+TGG - Chr1:84954623-84954642 None:intergenic 35.0%
!!! AATTTTTTGGCAGTCTTCGA+AGG - Chr1:84956061-84956080 None:intergenic 35.0%
!!! CCATAAGATTTTGGCTGAAA+AGG + Chr1:84956362-84956381 MsG0180004958.01.T01:CDS 35.0%
!!! GATCGGATACTTTTTTGGTT+TGG - Chr1:84954044-84954063 None:intergenic 35.0%
!!! GTTTTGAGTTTGCATGAACA+AGG + Chr1:84956234-84956253 MsG0180004958.01.T01:CDS 35.0%
AAGCTACCGGAATTCAAATC+CGG - Chr1:84955820-84955839 None:intergenic 40.0%
AATGCCAGAACGTATTCTTC+AGG + Chr1:84955420-84955439 MsG0180004958.01.T01:CDS 40.0%
AATTCTTGAAGGGGTTCCAA+TGG + Chr1:84956269-84956288 MsG0180004958.01.T01:CDS 40.0%
ACAGAGGAAAAACAGAGTTG+AGG + Chr1:84955885-84955904 MsG0180004958.01.T01:CDS 40.0%
AGAAGTTGAAGTTGACCCTT+TGG + Chr1:84955954-84955973 MsG0180004958.01.T01:CDS 40.0%
ATTCCGTTGGAAAATCTCAC+AGG + Chr1:84955329-84955348 MsG0180004958.01.T01:intron 40.0%
CAACCTAAACCGATCAAGTT+TGG + Chr1:84954095-84954114 MsG0180004958.01.T01:intron 40.0%
CTTAATCGTAAGTGTGCATG+AGG - Chr1:84954211-84954230 None:intergenic 40.0%
CTTCCCTTAACAAAAAGCCT+TGG - Chr1:84956192-84956211 None:intergenic 40.0%
GAAAAGTTGCGAGAATTTGC+AGG + Chr1:84955522-84955541 MsG0180004958.01.T01:CDS 40.0%
GGGTGTACACACTATCAATT+AGG - Chr1:84954701-84954720 None:intergenic 40.0%
GGTCCATTAGAACAATCCAT+TGG - Chr1:84956288-84956307 None:intergenic 40.0%
GTTACACTACCAACCTCATA+AGG - Chr1:84953725-84953744 None:intergenic 40.0%
TAACAACAGATGGATCCCAA+CGG - Chr1:84954386-84954405 None:intergenic 40.0%
TGAACCGAACCAAACAAGAT+CGG - Chr1:84954061-84954080 None:intergenic 40.0%
TGGTGAGATGAGATGATGAT+GGG - Chr1:84954283-84954302 None:intergenic 40.0%
TTCCGTTGGAAAATCTCACA+GGG + Chr1:84955330-84955349 MsG0180004958.01.T01:intron 40.0%
TTCTACACAACATCGCTTAG+AGG + Chr1:84956024-84956043 MsG0180004958.01.T01:CDS 40.0%
! AGAGTGATAGTTTGTCGTTC+CGG + Chr1:84955791-84955810 MsG0180004958.01.T01:CDS 40.0%
! ATCGATGCACAAGGAGTATA+AGG + Chr1:84956128-84956147 MsG0180004958.01.T01:CDS 40.0%
! CAAACTTGATCGGTTTAGGT+TGG - Chr1:84954097-84954116 None:intergenic 40.0%
! CACTATCAATTAGGGGTGTA+AGG - Chr1:84954692-84954711 None:intergenic 40.0%
! CCTCCAAGGCTTTTTGTTAA+GGG + Chr1:84956186-84956205 MsG0180004958.01.T01:CDS 40.0%
! GATGAATTGTGGAGCCTTTT+GGG + Chr1:84956150-84956169 MsG0180004958.01.T01:CDS 40.0%
! GTATCCGATCTTGTTTGGTT+CGG + Chr1:84954054-84954073 MsG0180004958.01.T01:intron 40.0%
! GTATTAGCTCTTGGTAACAG+TGG - Chr1:84955742-84955761 None:intergenic 40.0%
! GTGACAACAAAGGGTTCTAA+CGG - Chr1:84955189-84955208 None:intergenic 40.0%
! GTTGTTTCGGTTTCGAAGAT+TGG + Chr1:84955661-84955680 MsG0180004958.01.T01:CDS 40.0%
! TAAGGCTTTGTATCTCGAGA+GGG + Chr1:84956101-84956120 MsG0180004958.01.T01:CDS 40.0%
! TCTCGAGAAACAAATGGGTT+TGG - Chr1:84955490-84955509 None:intergenic 40.0%
! TGATACTGTAGGAGTGTAAG+TGG + Chr1:84953980-84953999 MsG0180004958.01.T01:intron 40.0%
! TTAAGGCTTTGTATCTCGAG+AGG + Chr1:84956100-84956119 MsG0180004958.01.T01:CDS 40.0%
! TTCCCTGTGAGATTTTCCAA+CGG - Chr1:84955335-84955354 None:intergenic 40.0%
!! TTGATGGTGTGTCCATATTG+TGG + Chr1:84956423-84956442 MsG0180004958.01.T01:CDS 40.0%
AAACCACCACAAGCATCACA+AGG - Chr1:84956309-84956328 None:intergenic 45.0%
AATCGTAAGTGTGCATGAGG+AGG - Chr1:84954208-84954227 None:intergenic 45.0%
AATGGACCTTGTGATGCTTG+TGG + Chr1:84956300-84956319 MsG0180004958.01.T01:CDS 45.0%
ATAGGGAGTGAGGTTAGCAT+CGG - Chr1:84954170-84954189 None:intergenic 45.0%
CCAAACCAAACTAGTCGGTT+TGG - Chr1:84954570-84954589 None:intergenic 45.0%
CCCTTAACAAAAAGCCTTGG+AGG - Chr1:84956189-84956208 None:intergenic 45.0%
GAAATCGAGACCTTGAGATG+AGG - Chr1:84953760-84953779 None:intergenic 45.0%
GAGGGATATATCGATGCACA+AGG + Chr1:84956119-84956138 MsG0180004958.01.T01:CDS 45.0%
GCACAACTTTCTCACCCAAA+AGG - Chr1:84956167-84956186 None:intergenic 45.0%
GTGATGCTTGTGGTGGTTTA+AGG + Chr1:84956310-84956329 MsG0180004958.01.T01:CDS 45.0%
GTGGTGAGATGAGATGATGA+TGG - Chr1:84954284-84954303 None:intergenic 45.0%
TCTAAACTGAACACGAGGCA+TGG + Chr1:84955102-84955121 MsG0180004958.01.T01:intron 45.0%
TGAGACGTATCCTCATCTCA+AGG + Chr1:84953747-84953766 MsG0180004958.01.T01:intron 45.0%
TGAGATGAGGATACGTCTCA+AGG - Chr1:84953747-84953766 None:intergenic 45.0%
! CAATTAGGGGTGTAAGGGTT+CGG - Chr1:84954686-84954705 None:intergenic 45.0%
! GCCTCCAAGGCTTTTTGTTA+AGG + Chr1:84956185-84956204 MsG0180004958.01.T01:CDS 45.0%
! GGATGAATTGTGGAGCCTTT+TGG + Chr1:84956149-84956168 MsG0180004958.01.T01:CDS 45.0%
! TCGATCCAAACCGACTAGTT+TGG + Chr1:84954562-84954581 MsG0180004958.01.T01:intron 45.0%
! TTAGCTCTTGGTAACAGTGG+TGG - Chr1:84955739-84955758 None:intergenic 45.0%
!! CCAAACCGACTAGTTTGGTT+TGG + Chr1:84954567-84954586 MsG0180004958.01.T01:intron 45.0%
!! GGAACGATGGGTTATGAGTT+AGG - Chr1:84954357-84954376 None:intergenic 45.0%
!! TGTAAGGGTTCGGTTTGGAT+CGG - Chr1:84954676-84954695 None:intergenic 45.0%
!! TTAGCATCGGTTCGGTTCAT+CGG - Chr1:84954157-84954176 None:intergenic 45.0%
!! TTCATCGGTTCGGTTTGGTT+CGG - Chr1:84954618-84954637 None:intergenic 45.0%
!! TTTGAAGAGAAGTGTCCACC+AGG + Chr1:84955982-84956001 MsG0180004958.01.T01:CDS 45.0%
!!! TTTTAAAAATTTGATATTTA+AGG - Chr1:84953884-84953903 None:intergenic 5.0%
!!! TTTTCTAATTATTTATTATT+TGG - Chr1:84953558-84953577 None:intergenic 5.0%
!!! TTTTTATAATTTATTTTGAA+GGG - Chr1:84954721-84954740 None:intergenic 5.0%
!!! TTTTTTATAATTTATTTTGA+AGG - Chr1:84954722-84954741 None:intergenic 5.0%
AACACGAGGCATGGCTTCAT+TGG + Chr1:84955111-84955130 MsG0180004958.01.T01:intron 50.0%
AGGAAGCTGTGAAGGAACAG+AGG + Chr1:84955869-84955888 MsG0180004958.01.T01:CDS 50.0%
ATCACAGTACCATCACCACC+TGG - Chr1:84956003-84956022 None:intergenic 50.0%
CGGAATTCAAATCCGGTCTC+CGG - Chr1:84955813-84955832 None:intergenic 50.0%
CGGAGACCGGATTTGAATTC+CGG + Chr1:84955811-84955830 MsG0180004958.01.T01:CDS 50.0%
GTGAGAAAGTTGTGCCTCCA+AGG + Chr1:84956172-84956191 MsG0180004958.01.T01:CDS 50.0%
! TAGTTTGTCGTTCCGGAGAC+CGG + Chr1:84955798-84955817 MsG0180004958.01.T01:CDS 50.0%
!! GAGTGAGGTTAGCATCGGTT+CGG - Chr1:84954165-84954184 None:intergenic 50.0%
!! GGTTCGGTTCATCGGTTCTT+TGG - Chr1:84954149-84954168 None:intergenic 50.0%
!! GTAAGGGTTCGGTTTGGATC+GGG - Chr1:84954675-84954694 None:intergenic 50.0%
!!! GTTCGGTTTGGATCGGGTTT+TGG - Chr1:84954669-84954688 None:intergenic 50.0%
AAGTGTCCACCAGGTGGTGA+TGG + Chr1:84955991-84956010 MsG0180004958.01.T01:CDS 55.0%
ACAGTACCATCACCACCTGG+TGG - Chr1:84956000-84956019 None:intergenic 55.0%
CAACAGATGGATCCCAACGG+CGG - Chr1:84954383-84954402 None:intergenic 55.0%
GGACCTTGTGATGCTTGTGG+TGG + Chr1:84956303-84956322 MsG0180004958.01.T01:CDS 55.0%
TCGAACGCAGCGAGCAGTTT+CGG - Chr1:84955850-84955869 None:intergenic 55.0%
TGCGTTCGAGGAAGCTGTGA+AGG + Chr1:84955861-84955880 MsG0180004958.01.T01:CDS 55.0%
! AGGGGTGTAAGGGTTCGGTT+TGG - Chr1:84954681-84954700 None:intergenic 55.0%
!! GAAGAGAAGTGTCCACCAGG+TGG + Chr1:84955985-84956004 MsG0180004958.01.T01:CDS 55.0%
CAACGGCGGTGAGGAACGAT+GGG - Chr1:84954369-84954388 None:intergenic 60.0%
CATCGTTCCTCACCGCCGTT+GGG + Chr1:84954368-84954387 MsG0180004958.01.T01:intron 60.0%
GAAACTGCTCGCTGCGTTCG+AGG + Chr1:84955849-84955868 MsG0180004958.01.T01:CDS 60.0%
CCAACGGCGGTGAGGAACGA+TGG - Chr1:84954370-84954389 None:intergenic 65.0%
CCATCGTTCCTCACCGCCGT+TGG + Chr1:84954367-84954386 MsG0180004958.01.T01:intron 65.0%
GATGGATCCCAACGGCGGTG+AGG - Chr1:84954378-84954397 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 84953237 84956449 84953237 ID=MsG0180004958.01;Name=MsG0180004958.01
Chr1 mRNA 84953237 84956449 84953237 ID=MsG0180004958.01.T01;Parent=MsG0180004958.01;Name=MsG0180004958.01.T01;_AED=0.27;_eAED=0.28;_QI=0|0|0|0.5|1|0.5|2|0|378
Chr1 exon 84953237 84953274 84953237 ID=MsG0180004958.01.T01:exon:27983;Parent=MsG0180004958.01.T01
Chr1 exon 84955351 84956449 84955351 ID=MsG0180004958.01.T01:exon:27984;Parent=MsG0180004958.01.T01
Chr1 CDS 84953237 84953274 84953237 ID=MsG0180004958.01.T01:cds;Parent=MsG0180004958.01.T01
Chr1 CDS 84955351 84956449 84955351 ID=MsG0180004958.01.T01:cds;Parent=MsG0180004958.01.T01
Gene Sequence

>MsG0180004958.01.T01

TTCGGTGTTGGATTCTCTATAAGCATATCTTCTAAAGGGGAAAAAATGAAGGGAGTGAAAGGAAAATTGTTGAAGAAGCTCAAATCAATCAAACAGGTCAATTATCTAATGCCAGAACGTATTCTTCAGGTAAAATCCATTGATGGGTATGCAGATTTTCTTCCAAAGATTTCACCAAACCCATTTGTTTCTCGAGAAAATGAGTCGAAGAAAAGTTGCGAGAATTTGCAGGAAGAACAACCACAACCAGAAATTATTGATGTATCAGAGCTTATGAAAGATCTTGAAGAAAATGAAGAAGAAATGGATTTGGATGATGATAATAAAGAGAATATTAGTCACAAAGGTGTTGTTTCGGTTTCGAAGATTGGTAACAGAGAAGAAACAGAGTCAAAACAGAGTGAAGTTTTGAGAGAAAAAAGACCACCACTGTTACCAAGAGCTAATACTGATAGAAAAAGGAAAAGCCTTCTTTCTGAGAGTGATAGTTTGTCGTTCCGGAGACCGGATTTGAATTCCGGTAGCTTATTTGATCCGAAACTGCTCGCTGCGTTCGAGGAAGCTGTGAAGGAACAGAGGAAAAACAGAGTTGAGGAAGAGTTTACAAAGGTAGATAAAATTGAATTTTTCGATGAAGATGAAGAAGTTGAAGTTGACCCTTTGGCGTTATTTGAAGAGAAGTGTCCACCAGGTGGTGATGGTACTGTGATTTTCTACACAACATCGCTTAGAGGAATCAGAAAGACCTTCGAAGACTGCCAAAAAATTCGGTTTCTTTTACAAAGTTTTAAGGCTTTGTATCTCGAGAGGGATATATCGATGCACAAGGAGTATAAGGATGAATTGTGGAGCCTTTTGGGTGAGAAAGTTGTGCCTCCAAGGCTTTTTGTTAAGGGAAGATATATAGGTGCAACAGAAGAAGTTTTGAGTTTGCATGAACAAGGAAAGTTGAAGAAAATTCTTGAAGGGGTTCCAATGGATTGTTCTAATGGACCTTGTGATGCTTGTGGTGGTTTAAGGTTTGTGATGTGTTTTAAGTGTAATGGTAGCCATAAGATTTTGGCTGAAAAGGAAGAGATTGATGAGTGTTTGTTGTGTAATGAGAATGGATTGATGGTGTGTCCATATTGTGGCTAG

Protein sequence

>MsG0180004958.01.T01

FGVGFSISISSKGEKMKGVKGKLLKKLKSIKQVNYLMPERILQVKSIDGYADFLPKISPNPFVSRENESKKSCENLQEEQPQPEIIDVSELMKDLEENEEEMDLDDDNKENISHKGVVSVSKIGNREETESKQSEVLREKRPPLLPRANTDRKRKSLLSESDSLSFRRPDLNSGSLFDPKLLAAFEEAVKEQRKNRVEEEFTKVDKIEFFDEDEEVEVDPLALFEEKCPPGGDGTVIFYTTSLRGIRKTFEDCQKIRFLLQSFKALYLERDISMHKEYKDELWSLLGEKVVPPRLFVKGRYIGATEEVLSLHEQGKLKKILEGVPMDCSNGPCDACGGLRFVMCFKCNGSHKILAEKEEIDECLLCNENGLMVCPYCG*