AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003858.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003858.01.T01 MTR_1g070180 91.787 621 44 1 22 642 25 638 0.0 1172
MsG0180003858.01.T01 MTR_7g096650 55.573 646 228 8 22 642 25 636 0.0 613
MsG0180003858.01.T01 MTR_7g096650 53.834 639 230 9 22 642 25 616 0.0 598
MsG0180003858.01.T01 MTR_7g096650 56.277 462 167 5 182 642 13 440 1.48e-163 478
MsG0180003858.01.T01 MTR_7g063470 27.914 652 383 24 33 643 2 607 6.61e-54 196
MsG0180003858.01.T01 MTR_7g063470 27.803 669 381 25 31 643 35 657 1.47e-53 195
MsG0180003858.01.T01 MTR_4g051565 55.491 173 73 2 470 642 619 787 5.81e-51 190
MsG0180003858.01.T01 MTR_4g051565 36.134 119 68 4 84 196 11 127 4.29e-13 73.2
MsG0180003858.01.T01 MTR_4g051565 55.491 173 73 2 470 642 707 875 1.07e-50 190
MsG0180003858.01.T01 MTR_4g051565 31.016 187 105 8 30 196 33 215 6.87e-14 75.9
MsG0180003858.01.T01 MTR_2g087295 53.179 173 77 2 470 642 668 836 4.25e-49 185
MsG0180003858.01.T01 MTR_2g087295 29.897 194 108 6 30 202 34 220 2.79e-15 80.1
MsG0180003858.01.T01 MTR_1g077640 44.375 160 84 2 486 642 573 730 2.64e-35 143
MsG0180003858.01.T01 MTR_1g018810 32.500 160 75 7 12 156 53 194 2.50e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003858.01.T01 AT2G31280 39.390 721 309 21 25 657 29 709 2.00e-121 378
MsG0180003858.01.T01 AT2G31280 39.631 704 299 20 25 642 29 692 5.43e-121 377
MsG0180003858.01.T01 AT2G31280 37.852 745 335 21 1 657 1 705 4.07e-113 356
MsG0180003858.01.T01 AT1G06150 48.579 387 172 10 265 642 341 709 2.14e-87 289
MsG0180003858.01.T01 AT1G06150 50.450 111 49 1 57 161 51 161 2.68e-25 112
MsG0180003858.01.T01 AT1G06150 48.579 387 170 11 265 642 341 707 1.00e-85 284
MsG0180003858.01.T01 AT1G06150 50.450 111 49 1 57 161 51 161 2.62e-25 112
MsG0180003858.01.T01 AT2G27230 29.922 645 344 20 30 642 33 601 3.95e-62 219
MsG0180003858.01.T01 AT2G27230 29.922 645 344 20 30 642 33 601 3.95e-62 219
MsG0180003858.01.T01 AT1G64625 46.626 163 72 1 480 642 327 474 1.22e-41 158
MsG0180003858.01.T01 AT1G64625 46.626 163 72 1 480 642 341 488 2.03e-41 158
MsG0180003858.01.T01 AT1G64625 46.626 163 72 1 480 642 351 498 2.12e-41 158
MsG0180003858.01.T01 AT1G64625 56.977 86 32 1 480 565 341 421 3.26e-24 106

Find 135 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTCAGCATACTTTATTTA+AGG 0.129093 1:-69295609 None:intergenic
TGGGAAGAATCACAATTATC+AGG 0.237556 1:-69295106 None:intergenic
TGATGGACTTGTTAAATCTT+TGG 0.262539 1:-69296718 None:intergenic
ATCTCGTCCGGAACATCTTT+TGG 0.269914 1:+69296965 MsG0180003858.01.T01:CDS
CTACAATATCATTATTACTA+TGG 0.303371 1:-69297010 None:intergenic
TATGTACATTTCTGTTGTTT+TGG 0.304838 1:-69298868 None:intergenic
GGGTAGGGATAGGTTGTTAT+TGG 0.323501 1:+69294055 MsG0180003858.01.T01:CDS
CATCATAGTTTGAGTTTGTC+AGG 0.324738 1:+69297176 MsG0180003858.01.T01:CDS
CTTCTGCTATCTCAAGAAAA+TGG 0.337897 1:-69298564 None:intergenic
AATTTCAAGCCCCTCGTGTT+TGG 0.340965 1:-69296499 None:intergenic
GTTGGACAGGTAGCTGTTAC+TGG 0.341561 1:+69295341 MsG0180003858.01.T01:CDS
CTCTGATTATCAACAACAAC+AGG 0.341637 1:+69298326 MsG0180003858.01.T01:CDS
AGCCTTCTGAATTAATATTT+CGG 0.342951 1:-69297112 None:intergenic
TCTATTCGTGATCACACATT+AGG 0.346800 1:+69296330 MsG0180003858.01.T01:CDS
GTGTGTTACGTTTCACGCTT+TGG 0.365954 1:-69296371 None:intergenic
GACGGGTGAAACACTTGATA+TGG 0.366173 1:+69296404 MsG0180003858.01.T01:CDS
TCACACATCCTTTCATTTGA+AGG 0.372706 1:-69296603 None:intergenic
CAAGATACCTTTGCTCCGTT+TGG 0.374894 1:-69297389 None:intergenic
CCGTATCATGTATATTCGTT+AGG 0.377911 1:+69295214 MsG0180003858.01.T01:CDS
AGTTGTCTGTCCCTTGGTCT+AGG 0.381960 1:-69297329 None:intergenic
CAGCATGCTTAGTTACGCTT+TGG 0.384514 1:-69297572 None:intergenic
ACTGATCCAAGACCGTATTA+AGG 0.395166 1:+69297349 MsG0180003858.01.T01:CDS
GTAGAAAATCTTAGTAAGAA+TGG 0.406604 1:+69298402 MsG0180003858.01.T01:CDS
TCATTATGAACAGAAACTTC+AGG 0.416026 1:-69297089 None:intergenic
CGTATCATGTATATTCGTTA+GGG 0.420977 1:+69295215 MsG0180003858.01.T01:CDS
TTAACTCCTTAATACGGTCT+TGG 0.421661 1:-69297355 None:intergenic
CCACTTGGAGTTGTTCAACT+TGG 0.421728 1:+69295584 MsG0180003858.01.T01:CDS
AGCAGAAGCCGTAAGAAGCT+TGG 0.422035 1:+69298579 MsG0180003858.01.T01:CDS
AACTGCGCAGTTGCATCATA+TGG 0.422500 1:+69298284 MsG0180003858.01.T01:intron
ATTATTACTATGGCAAACTT+TGG 0.428962 1:-69297000 None:intergenic
CGTCAGTCCCAAGCTTCTTA+CGG 0.431906 1:-69298587 None:intergenic
TGGATCAGTTGTCTGTCCCT+TGG 0.434072 1:-69297335 None:intergenic
CTTGAAATTGACAGCGATCA+AGG 0.439876 1:+69296513 MsG0180003858.01.T01:CDS
TAGAAAATCTTAGTAAGAAT+GGG 0.442335 1:+69298403 MsG0180003858.01.T01:CDS
GTTCTGAGAGCACATACTTT+GGG 0.443847 1:-69295125 None:intergenic
GACGAGATTCAAAAGTCAAT+TGG 0.450977 1:-69296950 None:intergenic
CTAGGCCAGGTGAAAGTTGT+AGG 0.452487 1:+69297306 MsG0180003858.01.T01:CDS
TGTTCTGAGAGCACATACTT+TGG 0.455292 1:-69295126 None:intergenic
CGGTCGGACCGCCATTAAAA+CGG 0.458939 1:+69294081 MsG0180003858.01.T01:CDS
ATCGATGAATTGTCTGTCAC+AGG 0.461483 1:+69298844 MsG0180003858.01.T01:CDS
CGCTTTGGATTTGACTAGGA+AGG 0.470186 1:-69296356 None:intergenic
GTTCTCTTAACTCCTTAATA+CGG 0.473917 1:-69297361 None:intergenic
GTTCAGAAGACCTCTCAAAC+TGG 0.474775 1:-69297259 None:intergenic
GCAGAAGCCGTAAGAAGCTT+GGG 0.478373 1:+69298580 MsG0180003858.01.T01:CDS
AGGAAATTTCAATGTGTATG+AGG 0.478639 1:-69296802 None:intergenic
CCGCCATTAAAACGGCGAGC+AGG 0.478662 1:+69294089 MsG0180003858.01.T01:CDS
CATATGGAAAATGACATTCA+TGG 0.481714 1:+69298300 MsG0180003858.01.T01:CDS
TCCTGTTTCTACAGTATGGT+TGG 0.484140 1:+69295323 MsG0180003858.01.T01:intron
TTTCTACAGTATGGTTGGAC+AGG 0.486471 1:+69295328 MsG0180003858.01.T01:intron
TATTAAGGAGTTAAGAGAAC+TGG 0.491639 1:+69297364 MsG0180003858.01.T01:CDS
AGGATCCTCACCTTAAAAGA+TGG 0.491951 1:-69295410 None:intergenic
GTAACGCCCTCCCAATGTCC+TGG 0.494376 1:+69296426 MsG0180003858.01.T01:CDS
CGCCATTAAAACGGCGAGCA+GGG 0.495030 1:+69294090 MsG0180003858.01.T01:CDS
ACAACAACAGGGTTCAAGTT+GGG 0.495964 1:+69298338 MsG0180003858.01.T01:CDS
ATGTGTGAAGGGAACAATAA+TGG 0.497231 1:+69296618 MsG0180003858.01.T01:CDS
TAAAACGGCGAGCAGGGTTG+AGG 0.498874 1:+69294096 MsG0180003858.01.T01:CDS
GAGTGAGAGGTGTGATGGGT+AGG 0.500760 1:+69294039 None:intergenic
TACACATTGAAATTTCCTGC+TGG 0.505845 1:+69296807 MsG0180003858.01.T01:CDS
TGACATCGATTGAAGCAAGA+TGG 0.514120 1:-69296538 None:intergenic
ATCAAGTGTTTCACCCGTCA+TGG 0.518290 1:-69296400 None:intergenic
TTACTCTCTTTGAGAAAACC+TGG 0.521989 1:-69296855 None:intergenic
CTGACAAACTCAAACTATGA+TGG 0.527690 1:-69297175 None:intergenic
ATGTATATTCGTTAGGGGAA+GGG 0.529135 1:+69295221 MsG0180003858.01.T01:CDS
CCTAACGAATATACATGATA+CGG 0.532424 1:-69295214 None:intergenic
ATCATTTCCTACATCAGTGC+AGG 0.536203 1:+69297043 MsG0180003858.01.T01:CDS
GTGCAGTATTGATTCACTGT+TGG 0.539514 1:+69297521 MsG0180003858.01.T01:intron
ACTGCTTCCAAAAGATGTTC+CGG 0.539659 1:-69296972 None:intergenic
GGGAAGAATCACAATTATCA+GGG 0.539821 1:-69295105 None:intergenic
AGGAGGAAACAAGCTGGAAG+AGG 0.540000 1:+69294116 MsG0180003858.01.T01:CDS
TAATGATATTGTAGATAATG+AGG 0.540266 1:+69297019 MsG0180003858.01.T01:CDS
ACAGGGTTCAAGTTGGGCAA+TGG 0.540297 1:+69298344 MsG0180003858.01.T01:CDS
AGTGAGAGGTGTGATGGGTA+GGG 0.540634 1:+69294040 None:intergenic
ACCTTGGAGCAGATCTATGT+TGG 0.541880 1:+69295148 MsG0180003858.01.T01:CDS
CATGTATATTCGTTAGGGGA+AGG 0.541965 1:+69295220 MsG0180003858.01.T01:CDS
GCAGAGAATACGAAACAAGT+AGG 0.544022 1:+69296573 MsG0180003858.01.T01:CDS
TCAACCATCTCATATTAAAG+AGG 0.552455 1:+69297145 MsG0180003858.01.T01:CDS
AACAACAACAGGGTTCAAGT+TGG 0.556005 1:+69298337 MsG0180003858.01.T01:CDS
ATCATAGTTTGAGTTTGTCA+GGG 0.556500 1:+69297177 MsG0180003858.01.T01:CDS
ATATCCTCTTTAATATGAGA+TGG 0.557881 1:-69297149 None:intergenic
TTACATGAAGCACTTGGACC+AGG 0.559643 1:+69296837 MsG0180003858.01.T01:CDS
GGATAGGTTGTTATTGGCAA+CGG 0.562235 1:+69294061 MsG0180003858.01.T01:CDS
GACCGAAATATTAATTCAGA+AGG 0.563885 1:+69297110 MsG0180003858.01.T01:CDS
CAAATGAAAGGATGTGTGAA+GGG 0.564926 1:+69296607 MsG0180003858.01.T01:CDS
TCAAGTTGGGCAATGGAGGT+AGG 0.566298 1:+69298351 MsG0180003858.01.T01:CDS
GGATGAAACCTTCAAATGAA+AGG 0.568936 1:+69296595 MsG0180003858.01.T01:CDS
AACAATTGTCTGTAAATGCA+AGG 0.574444 1:-69295546 None:intergenic
TCAGAAAATGACTATTGATG+TGG 0.577639 1:+69296476 MsG0180003858.01.T01:CDS
TTGCTTGCAGGATCTTGACA+TGG 0.580291 1:+69295062 MsG0180003858.01.T01:intron
TCATGTAACTCATAACCAGC+AGG 0.580707 1:-69296822 None:intergenic
AACGGCGAGCAGGGTTGAGG+AGG 0.581208 1:+69294099 MsG0180003858.01.T01:CDS
CTAGGCCTACAACTTTCACC+TGG 0.582898 1:-69297311 None:intergenic
TTCACGCTTTGGATTTGACT+AGG 0.583058 1:-69296360 None:intergenic
AACACACAGAAAACCATGAC+GGG 0.583428 1:+69296387 MsG0180003858.01.T01:CDS
GGGTTCAAGTTGGGCAATGG+AGG 0.584395 1:+69298347 MsG0180003858.01.T01:CDS
GAGGTGTGATGGGTAGGGAT+AGG 0.587096 1:+69294045 None:intergenic
GGGTTGAGGAGGAAACAAGC+TGG 0.587284 1:+69294110 MsG0180003858.01.T01:CDS
TCAAATGAAAGGATGTGTGA+AGG 0.588450 1:+69296606 MsG0180003858.01.T01:CDS
TAACGCCCTCCCAATGTCCT+GGG 0.589847 1:+69296427 MsG0180003858.01.T01:CDS
CAGAGAATACGAAACAAGTA+GGG 0.591572 1:+69296574 MsG0180003858.01.T01:CDS
CTGTTGTTGTTGATAATCAG+AGG 0.593214 1:-69298325 None:intergenic
TTAAGAGAACTGGTGCCAAA+CGG 0.593259 1:+69297374 MsG0180003858.01.T01:CDS
ATTGTGTCCTGCACTGATGT+AGG 0.598822 1:-69297050 None:intergenic
ACTGGTGCCAAACGGAGCAA+AGG 0.604316 1:+69297382 MsG0180003858.01.T01:CDS
TATGAGTTACATGAAGCACT+TGG 0.610930 1:+69296831 MsG0180003858.01.T01:CDS
TATTGATGTGGCCAAACACG+AGG 0.617153 1:+69296488 MsG0180003858.01.T01:CDS
TGCTTGCAGGATCTTGACAT+GGG 0.618674 1:+69295063 MsG0180003858.01.T01:intron
AGGTTGTTATTGGCAACGGT+CGG 0.619266 1:+69294065 MsG0180003858.01.T01:CDS
TTGAGTTTGTCAGGGATCTG+CGG 0.621537 1:+69297185 MsG0180003858.01.T01:CDS
GGAGGAAACAAGCTGGAAGA+GGG 0.623624 1:+69294117 MsG0180003858.01.T01:CDS
AAAGTTGTAGGCCTAGACCA+AGG 0.627816 1:+69297318 MsG0180003858.01.T01:CDS
TACATCAGTGCAGGACACAA+TGG 0.629927 1:+69297052 MsG0180003858.01.T01:CDS
TCGATGAATTGTCTGTCACA+GGG 0.630781 1:+69298845 MsG0180003858.01.T01:CDS
AATGCAGGTTGGTGAAGACA+TGG 0.636281 1:+69296275 MsG0180003858.01.T01:intron
AACTGGTTACTACACGAGCT+AGG 0.639086 1:-69297242 None:intergenic
GAATGGGCAGATGCTTGTTG+AGG 0.640182 1:+69298419 MsG0180003858.01.T01:CDS
GTCGTAGCAGTACTACCACT+TGG 0.641686 1:+69295569 MsG0180003858.01.T01:CDS
CTGTTACTGGAAAACATCAG+TGG 0.641892 1:+69295354 MsG0180003858.01.T01:CDS
TCCAACATAGATCTGCTCCA+AGG 0.643426 1:-69295149 None:intergenic
AGTTGGGCAATGGAGGTAGG+AGG 0.643833 1:+69298354 MsG0180003858.01.T01:CDS
CGTGTAGTAACCAGTTTGAG+AGG 0.651078 1:+69297249 MsG0180003858.01.T01:CDS
AAGTTGTAGGCCTAGACCAA+GGG 0.652681 1:+69297319 MsG0180003858.01.T01:CDS
TCGCAACAGATAATCCTAGA+GGG 0.655424 1:-69295186 None:intergenic
TTCGCAACAGATAATCCTAG+AGG 0.664107 1:-69295187 None:intergenic
TTGCAGGATCTTGACATGGG+AGG 0.664946 1:+69295066 MsG0180003858.01.T01:intron
TAACACACAGAAAACCATGA+CGG 0.666602 1:+69296386 MsG0180003858.01.T01:CDS
TGCAGGTTGGTGAAGACATG+GGG 0.669819 1:+69296277 MsG0180003858.01.T01:intron
ATGCAGGTTGGTGAAGACAT+GGG 0.672643 1:+69296276 MsG0180003858.01.T01:intron
ATTGATGTGGCCAAACACGA+GGG 0.677054 1:+69296489 MsG0180003858.01.T01:CDS
CCAAGTTGAACAACTCCAAG+TGG 0.686515 1:-69295584 None:intergenic
TTGATGTGGCCAAACACGAG+GGG 0.694860 1:+69296490 MsG0180003858.01.T01:CDS
TATGTGCTCTCAGAACACCT+TGG 0.696188 1:+69295132 MsG0180003858.01.T01:CDS
CATGCTACAGATGCTCTGTG+AGG 0.715737 1:+69298534 MsG0180003858.01.T01:intron
GTATCATGTATATTCGTTAG+GGG 0.726980 1:+69295216 MsG0180003858.01.T01:CDS
TCTGATTATCAACAACAACA+GGG 0.741738 1:+69298327 MsG0180003858.01.T01:CDS
AACGGTGCAAGTGAAGCTCG+TGG 0.750508 1:+69298616 MsG0180003858.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACATTATAAAGAATAA+TGG - Chr1:69295715-69295734 None:intergenic 10.0%
!! ATATTTGACATAAAATATAA+AGG + Chr1:69296006-69296025 MsG0180003858.01.T01:intron 10.0%
!! ATTGATGTTTATAAAATTAA+GGG - Chr1:69298111-69298130 None:intergenic 10.0%
!! TATTGATGTTTATAAAATTA+AGG - Chr1:69298112-69298131 None:intergenic 10.0%
!! AAATTAGGAGATTATATAAA+TGG - Chr1:69295814-69295833 None:intergenic 15.0%
!! AAGAAATTTAAGCATTAAAA+GGG - Chr1:69295650-69295669 None:intergenic 15.0%
!! AATTAGGAGATTATATAAAT+GGG - Chr1:69295813-69295832 None:intergenic 15.0%
!! ATTTATAATAACCCTTTATT+TGG + Chr1:69294253-69294272 MsG0180003858.01.T01:intron 15.0%
!! TTCTTAATTCAATATCTAAA+AGG - Chr1:69294629-69294648 None:intergenic 15.0%
!! TTTAGATATTGAATTAAGAA+GGG + Chr1:69294629-69294648 MsG0180003858.01.T01:intron 15.0%
!! TTTATATAATCTCCTAATTT+CGG + Chr1:69295814-69295833 MsG0180003858.01.T01:intron 15.0%
!! TTTGCTTATTATGTATAATA+AGG - Chr1:69295890-69295909 None:intergenic 15.0%
!!! AAATGCCATTATTTTATTAT+TGG - Chr1:69297711-69297730 None:intergenic 15.0%
!!! AATGCCATTATTTTATTATT+GGG - Chr1:69297710-69297729 None:intergenic 15.0%
!!! AATTTTCAAAACATTGTTTT+CGG - Chr1:69298000-69298019 None:intergenic 15.0%
!!! TATGTCAAATATATTAGTTT+TGG - Chr1:69295998-69296017 None:intergenic 15.0%
!!! TTTTAGATATTGAATTAAGA+AGG + Chr1:69294628-69294647 MsG0180003858.01.T01:intron 15.0%
!! AAACATCAATAAGTATGAAA+TGG + Chr1:69298121-69298140 MsG0180003858.01.T01:intron 20.0%
!! AAACATTATGGAAATTAGAA+AGG - Chr1:69294534-69294553 None:intergenic 20.0%
!! ACATATGAAATTTAACTCAT+TGG - Chr1:69295011-69295030 None:intergenic 20.0%
!! ATGTAGTTGAATAAATTTGA+CGG + Chr1:69296158-69296177 MsG0180003858.01.T01:intron 20.0%
!! CAAGAAATTTAAGCATTAAA+AGG - Chr1:69295651-69295670 None:intergenic 20.0%
!! CATATGAAATTTAACTCATT+GGG - Chr1:69295010-69295029 None:intergenic 20.0%
!! CTACAATATCATTATTACTA+TGG - Chr1:69297013-69297032 None:intergenic 20.0%
!! TAATGATATTGTAGATAATG+AGG + Chr1:69297019-69297038 MsG0180003858.01.T01:CDS 20.0%
!! TAGAAAATCTTAGTAAGAAT+GGG + Chr1:69298403-69298422 MsG0180003858.01.T01:CDS 20.0%
!! TCTTCCCAATAATAAAATAA+TGG + Chr1:69297703-69297722 MsG0180003858.01.T01:intron 20.0%
!!! AAGAGAGTAAATATTTTGAT+TGG + Chr1:69296868-69296887 MsG0180003858.01.T01:CDS 20.0%
!!! ATTAACATTTTGCTAACAAA+TGG - Chr1:69296229-69296248 None:intergenic 20.0%
!!! ATTTTCTAAAACAAAGACAA+AGG + Chr1:69297608-69297627 MsG0180003858.01.T01:CDS 20.0%
!!! CAATTTTAGATTTGGTTTTA+AGG + Chr1:69294673-69294692 MsG0180003858.01.T01:intron 20.0%
!!! CTTATCTTAACATGTTTTAT+TGG + Chr1:69295031-69295050 MsG0180003858.01.T01:intron 20.0%
!!! TAAAGGCATATAATTTTTAG+TGG + Chr1:69296023-69296042 MsG0180003858.01.T01:intron 20.0%
!!! TCAAGAATCAATTTTAGATT+TGG + Chr1:69294665-69294684 MsG0180003858.01.T01:intron 20.0%
! AAAGCTCTGTTAATGAAAAA+TGG - Chr1:69295525-69295544 None:intergenic 25.0%
! AAGCTCTGTTAATGAAAAAT+GGG - Chr1:69295524-69295543 None:intergenic 25.0%
! AGCCTTCTGAATTAATATTT+CGG - Chr1:69297115-69297134 None:intergenic 25.0%
! ATATCCTCTTTAATATGAGA+TGG - Chr1:69297152-69297171 None:intergenic 25.0%
! ATCTAAAAACAGCAAAAAGA+GGG + Chr1:69297283-69297302 MsG0180003858.01.T01:CDS 25.0%
! ATGAAAATCAGCAAACATTA+TGG - Chr1:69294546-69294565 None:intergenic 25.0%
! ATTATTACTATGGCAAACTT+TGG - Chr1:69297003-69297022 None:intergenic 25.0%
! CGTAAAACTATTATGCATTA+TGG + Chr1:69298792-69298811 MsG0180003858.01.T01:intron 25.0%
! CTCATTGTAAAATTGTTGTA+GGG - Chr1:69298210-69298229 None:intergenic 25.0%
! CTGATACCAACTAAAAATTT+GGG - Chr1:69294861-69294880 None:intergenic 25.0%
! GTAGAAAATCTTAGTAAGAA+TGG + Chr1:69298402-69298421 MsG0180003858.01.T01:CDS 25.0%
! TCAGTGAAAATAGAAACAAA+CGG + Chr1:69298084-69298103 MsG0180003858.01.T01:intron 25.0%
! TCTGATACCAACTAAAAATT+TGG - Chr1:69294862-69294881 None:intergenic 25.0%
! TTTAATCTTAAACTGCATCT+AGG - Chr1:69295273-69295292 None:intergenic 25.0%
!! ACATGTAGAAGAAAAACTTT+TGG - Chr1:69297222-69297241 None:intergenic 25.0%
!! AGTTAGAGAAAATGCATTTT+TGG + Chr1:69297969-69297988 MsG0180003858.01.T01:intron 25.0%
!! ATAATAACCCTTTATTTGGA+GGG + Chr1:69294257-69294276 MsG0180003858.01.T01:intron 25.0%
!! ATACTGAATGAATTTTCAGA+TGG - Chr1:69298380-69298399 None:intergenic 25.0%
!! ATGTAGAAGAAAAACTTTTG+GGG - Chr1:69297220-69297239 None:intergenic 25.0%
!! CATGTAGAAGAAAAACTTTT+GGG - Chr1:69297221-69297240 None:intergenic 25.0%
!! GTTTTTACACAATTCAGTTA+TGG + Chr1:69296683-69296702 MsG0180003858.01.T01:CDS 25.0%
!! TAGTCAGCATACTTTATTTA+AGG - Chr1:69295612-69295631 None:intergenic 25.0%
!! TATAATAACCCTTTATTTGG+AGG + Chr1:69294256-69294275 MsG0180003858.01.T01:intron 25.0%
!! TCTAGAAAGAGTATATGTAA+AGG - Chr1:69298468-69298487 None:intergenic 25.0%
!!! AATTTCTAGTCCATCTTTTA+AGG + Chr1:69295400-69295419 MsG0180003858.01.T01:CDS 25.0%
!!! ATTACATACATTGATTTGAG+TGG + Chr1:69297760-69297779 MsG0180003858.01.T01:intron 25.0%
!!! GAGTAAATATTTTGATTGGA+CGG + Chr1:69296872-69296891 MsG0180003858.01.T01:CDS 25.0%
!!! TATGTACATTTCTGTTGTTT+TGG - Chr1:69298871-69298890 None:intergenic 25.0%
!!! TGTTAAAGTTTTGGTTTTTG+TGG + Chr1:69294280-69294299 MsG0180003858.01.T01:intron 25.0%
!!! TTGTTGGTTTCTTTTTTTGA+GGG + Chr1:69294185-69294204 MsG0180003858.01.T01:intron 25.0%
!!! TTTGTTGCTTTTTTTGTTGT+TGG + Chr1:69294169-69294188 MsG0180003858.01.T01:intron 25.0%
AACAATTGTCTGTAAATGCA+AGG - Chr1:69295549-69295568 None:intergenic 30.0%
AGGAAATTTCAATGTGTATG+AGG - Chr1:69296805-69296824 None:intergenic 30.0%
AGTTGCATCATTGAAGAATA+AGG - Chr1:69295433-69295452 None:intergenic 30.0%
ATATTGAATTAAGAAGGGCA+TGG + Chr1:69294634-69294653 MsG0180003858.01.T01:intron 30.0%
ATGTATAATAAGGACTGACA+GGG - Chr1:69295880-69295899 None:intergenic 30.0%
CATATGGAAAATGACATTCA+TGG + Chr1:69298300-69298319 MsG0180003858.01.T01:CDS 30.0%
CATCTAAAAACAGCAAAAAG+AGG + Chr1:69297282-69297301 MsG0180003858.01.T01:CDS 30.0%
CCTAACGAATATACATGATA+CGG - Chr1:69295217-69295236 None:intergenic 30.0%
CCTCATTGTAAAATTGTTGT+AGG - Chr1:69298211-69298230 None:intergenic 30.0%
CGTATCATGTATATTCGTTA+GGG + Chr1:69295215-69295234 MsG0180003858.01.T01:CDS 30.0%
CGTCAAAATGAGTTTAGAAA+CGG + Chr1:69294789-69294808 MsG0180003858.01.T01:intron 30.0%
CTTAACTGTGATAGAGAATA+TGG + Chr1:69297941-69297960 MsG0180003858.01.T01:intron 30.0%
GACCGAAATATTAATTCAGA+AGG + Chr1:69297110-69297129 MsG0180003858.01.T01:CDS 30.0%
GTATCATGTATATTCGTTAG+GGG + Chr1:69295216-69295235 MsG0180003858.01.T01:CDS 30.0%
GTCAAAATGAGTTTAGAAAC+GGG + Chr1:69294790-69294809 MsG0180003858.01.T01:intron 30.0%
GTGATAACTAATGTTCATCA+AGG - Chr1:69297846-69297865 None:intergenic 30.0%
GTTCTCTTAACTCCTTAATA+CGG - Chr1:69297364-69297383 None:intergenic 30.0%
TACCAACTAAAAATTTGGGT+TGG - Chr1:69294857-69294876 None:intergenic 30.0%
TAGCATGTAATTATTGTGCT+CGG + Chr1:69296122-69296141 MsG0180003858.01.T01:intron 30.0%
TATGTATAATAAGGACTGAC+AGG - Chr1:69295881-69295900 None:intergenic 30.0%
TATTAAGGAGTTAAGAGAAC+TGG + Chr1:69297364-69297383 MsG0180003858.01.T01:CDS 30.0%
TCAAAATGAGTTTAGAAACG+GGG + Chr1:69294791-69294810 MsG0180003858.01.T01:intron 30.0%
TCAACCATCTCATATTAAAG+AGG + Chr1:69297145-69297164 MsG0180003858.01.T01:CDS 30.0%
TCAGAAAATGACTATTGATG+TGG + Chr1:69296476-69296495 MsG0180003858.01.T01:CDS 30.0%
TCATTATGAACAGAAACTTC+AGG - Chr1:69297092-69297111 None:intergenic 30.0%
TCCTGTATAGTAAGATTTGA+AGG + Chr1:69295462-69295481 MsG0180003858.01.T01:intron 30.0%
TCTGATTATCAACAACAACA+GGG + Chr1:69298327-69298346 MsG0180003858.01.T01:CDS 30.0%
TTCATGTTATAGAGGTTTCT+TGG + Chr1:69294561-69294580 MsG0180003858.01.T01:intron 30.0%
TTTAACACCCTCCAAATAAA+GGG - Chr1:69294267-69294286 None:intergenic 30.0%
TTTAAGCATTAAAAGGGACA+AGG - Chr1:69295644-69295663 None:intergenic 30.0%
! ATCATAGTTTGAGTTTGTCA+GGG + Chr1:69297177-69297196 MsG0180003858.01.T01:CDS 30.0%
! ATTCATGATAATGAGCGTAA+GGG - Chr1:69298514-69298533 None:intergenic 30.0%
! CCTACAACAATTTTACAATG+AGG + Chr1:69298208-69298227 MsG0180003858.01.T01:intron 30.0%
! TCTTAGTAGTTGATGCAAAT+TGG - Chr1:69294328-69294347 None:intergenic 30.0%
! TGTAGAAGAAAAACTTTTGG+GGG - Chr1:69297219-69297238 None:intergenic 30.0%
! TGTTCTACAAGCATTTTGTT+TGG + Chr1:69294706-69294725 MsG0180003858.01.T01:intron 30.0%
!! ACATTGATTTGAGTGGAATT+AGG + Chr1:69297767-69297786 MsG0180003858.01.T01:intron 30.0%
!! ATTGGAAGTATGCTATCTTT+TGG + Chr1:69294367-69294386 MsG0180003858.01.T01:intron 30.0%
!! ATTTTGACGTCATATCTGAT+TGG - Chr1:69294778-69294797 None:intergenic 30.0%
!! CTTAACATGTTTTATTGGTG+TGG + Chr1:69295036-69295055 MsG0180003858.01.T01:intron 30.0%
!! CTTGCATTTGTTATGTTGTT+AGG + Chr1:69294968-69294987 MsG0180003858.01.T01:intron 30.0%
!! GTCATTTTCTGATAAACAGT+AGG - Chr1:69296468-69296487 None:intergenic 30.0%
!! TGACGGATTGTATAATAGTT+TGG + Chr1:69296175-69296194 MsG0180003858.01.T01:intron 30.0%
!! TGATGGACTTGTTAAATCTT+TGG - Chr1:69296721-69296740 None:intergenic 30.0%
!! TGCTTGTTCAATTGCTATTT+AGG + Chr1:69297663-69297682 MsG0180003858.01.T01:intron 30.0%
!!! CTCTTTTTGCTGTTTTTAGA+TGG - Chr1:69297284-69297303 None:intergenic 30.0%
!!! GTTGTTGGTTTCTTTTTTTG+AGG + Chr1:69294184-69294203 MsG0180003858.01.T01:intron 30.0%
!!! TGCTGATTTTCATGTTATAG+AGG + Chr1:69294553-69294572 MsG0180003858.01.T01:intron 30.0%
!!! TGTTGGTTTCTTTTTTTGAG+GGG + Chr1:69294186-69294205 MsG0180003858.01.T01:intron 30.0%
ACCAAGCAATTACCGAAATT+AGG - Chr1:69295829-69295848 None:intergenic 35.0%
ACTACTAAGAAGCCTTTGTT+TGG + Chr1:69294338-69294357 MsG0180003858.01.T01:intron 35.0%
ACTTGTAGTTCCAATTCTTG+TGG + Chr1:69297471-69297490 MsG0180003858.01.T01:intron 35.0%
AGACAAAGGTAACGTCTTAT+TGG + Chr1:69297622-69297641 MsG0180003858.01.T01:intron 35.0%
AGAGCCTATTCAATATCTGT+TGG + Chr1:69294879-69294898 MsG0180003858.01.T01:intron 35.0%
ATAGAGGAAGCTAAAGCAAA+GGG + Chr1:69294144-69294163 MsG0180003858.01.T01:intron 35.0%
ATGTATATTCGTTAGGGGAA+GGG + Chr1:69295221-69295240 MsG0180003858.01.T01:CDS 35.0%
ATGTGTGAAGGGAACAATAA+TGG + Chr1:69296618-69296637 MsG0180003858.01.T01:CDS 35.0%
CAAATGAAAGGATGTGTGAA+GGG + Chr1:69296607-69296626 MsG0180003858.01.T01:CDS 35.0%
CAGAGAATACGAAACAAGTA+GGG + Chr1:69296574-69296593 MsG0180003858.01.T01:CDS 35.0%
CATTTGCTTGTCAACATGTA+AGG - Chr1:69296096-69296115 None:intergenic 35.0%
CCGTATCATGTATATTCGTT+AGG + Chr1:69295214-69295233 MsG0180003858.01.T01:CDS 35.0%
CTCTGATTATCAACAACAAC+AGG + Chr1:69298326-69298345 MsG0180003858.01.T01:CDS 35.0%
CTGACAAACTCAAACTATGA+TGG - Chr1:69297178-69297197 None:intergenic 35.0%
CTTCTGCTATCTCAAGAAAA+TGG - Chr1:69298567-69298586 None:intergenic 35.0%
CTTTAACACCCTCCAAATAA+AGG - Chr1:69294268-69294287 None:intergenic 35.0%
GACGAGATTCAAAAGTCAAT+TGG - Chr1:69296953-69296972 None:intergenic 35.0%
GAGCCTATTCAATATCTGTT+GGG + Chr1:69294880-69294899 MsG0180003858.01.T01:intron 35.0%
GCCTTCAAATCTTACTATAC+AGG - Chr1:69295466-69295485 None:intergenic 35.0%
GGATGAAACCTTCAAATGAA+AGG + Chr1:69296595-69296614 MsG0180003858.01.T01:CDS 35.0%
GGGAAGAATCACAATTATCA+GGG - Chr1:69295108-69295127 None:intergenic 35.0%
TAACACACAGAAAACCATGA+CGG + Chr1:69296386-69296405 MsG0180003858.01.T01:CDS 35.0%
TAATTTCGGTAATTGCTTGG+TGG + Chr1:69295828-69295847 MsG0180003858.01.T01:intron 35.0%
TACACATTGAAATTTCCTGC+TGG + Chr1:69296807-69296826 MsG0180003858.01.T01:CDS 35.0%
TACTGTAGAAACAGGACATT+AGG - Chr1:69295319-69295338 None:intergenic 35.0%
TATAGAGGAAGCTAAAGCAA+AGG + Chr1:69294143-69294162 MsG0180003858.01.T01:intron 35.0%
TCAAATGAAAGGATGTGTGA+AGG + Chr1:69296606-69296625 MsG0180003858.01.T01:CDS 35.0%
TCAATGATGCAACTTGCATT+TGG + Chr1:69295439-69295458 MsG0180003858.01.T01:intron 35.0%
TCACACATCCTTTCATTTGA+AGG - Chr1:69296606-69296625 None:intergenic 35.0%
TCCAATCAGTATCCAAACAA+AGG - Chr1:69294353-69294372 None:intergenic 35.0%
TCCTAATTTCGGTAATTGCT+TGG + Chr1:69295825-69295844 MsG0180003858.01.T01:intron 35.0%
TCTATTCGTGATCACACATT+AGG + Chr1:69296330-69296349 MsG0180003858.01.T01:CDS 35.0%
TGGGAAGAATCACAATTATC+AGG - Chr1:69295109-69295128 None:intergenic 35.0%
TTAACTCCTTAATACGGTCT+TGG - Chr1:69297358-69297377 None:intergenic 35.0%
TTAGTTATCACTGAAGCCAA+TGG + Chr1:69297855-69297874 MsG0180003858.01.T01:intron 35.0%
TTATGTCAAGACTTGACATC+TGG - Chr1:69294937-69294956 None:intergenic 35.0%
! AACGATGAGACATTTTTGTC+TGG - Chr1:69296666-69296685 None:intergenic 35.0%
! AAGATTTGAAGGCGTGTAAT+TGG + Chr1:69295473-69295492 MsG0180003858.01.T01:intron 35.0%
! CATCATAGTTTGAGTTTGTC+AGG + Chr1:69297176-69297195 MsG0180003858.01.T01:CDS 35.0%
! GATTCATGATAATGAGCGTA+AGG - Chr1:69298515-69298534 None:intergenic 35.0%
! TATAGAGGTTTCTTGGTGAT+TGG + Chr1:69294568-69294587 MsG0180003858.01.T01:intron 35.0%
! TATGAGTTACATGAAGCACT+TGG + Chr1:69296831-69296850 MsG0180003858.01.T01:CDS 35.0%
! TCAGCTTCTACATTTTCTGA+TGG - Chr1:69296738-69296757 None:intergenic 35.0%
! TTACTCTCTTTGAGAAAACC+TGG - Chr1:69296858-69296877 None:intergenic 35.0%
! TTTAAGCTTTGTGAATAGCC+AGG + Chr1:69297818-69297837 MsG0180003858.01.T01:intron 35.0%
! TTTTCTAATCCTGTCTCAGT+AGG + Chr1:69297425-69297444 MsG0180003858.01.T01:intron 35.0%
!! AATGTCCTGTTTCTACAGTA+TGG + Chr1:69295319-69295338 MsG0180003858.01.T01:intron 35.0%
!! ATTGACTTTTGAATCTCGTC+CGG + Chr1:69296953-69296972 MsG0180003858.01.T01:CDS 35.0%
!! CTGTTGTTGTTGATAATCAG+AGG - Chr1:69298328-69298347 None:intergenic 35.0%
!!! ACCTTACAAGTTGGTTTTGT+GGG + Chr1:69294820-69294839 MsG0180003858.01.T01:intron 35.0%
!!! AGGCTTTGGTTTTTTGATAG+CGG + Chr1:69297445-69297464 MsG0180003858.01.T01:intron 35.0%
!!! GTTGGTTTCTTTTTTTGAGG+GGG + Chr1:69294187-69294206 MsG0180003858.01.T01:intron 35.0%
!!! GTTTTGGTTTTTGTGGAAGA+AGG + Chr1:69294287-69294306 MsG0180003858.01.T01:intron 35.0%
!!! TATTTTGATTGGACGGTACA+AGG + Chr1:69296879-69296898 MsG0180003858.01.T01:CDS 35.0%
!!! TTTGGAGGGTGTTAAAGTTT+TGG + Chr1:69294271-69294290 MsG0180003858.01.T01:intron 35.0%
AAAACAGCAAAAAGAGGGCT+AGG + Chr1:69297288-69297307 MsG0180003858.01.T01:CDS 40.0%
AAACCTTCAGCCACAAGAAT+TGG - Chr1:69297484-69297503 None:intergenic 40.0%
AAATGAAATTCCAGCTACCC+TGG - Chr1:69297907-69297926 None:intergenic 40.0%
AACAACAACAGGGTTCAAGT+TGG + Chr1:69298337-69298356 MsG0180003858.01.T01:CDS 40.0%
AACACACAGAAAACCATGAC+GGG + Chr1:69296387-69296406 MsG0180003858.01.T01:CDS 40.0%
AATGAAATTCCAGCTACCCT+GGG - Chr1:69297906-69297925 None:intergenic 40.0%
ACTGATCCAAGACCGTATTA+AGG + Chr1:69297349-69297368 MsG0180003858.01.T01:CDS 40.0%
ACTGCTTCCAAAAGATGTTC+CGG - Chr1:69296975-69296994 None:intergenic 40.0%
AGGATCCTCACCTTAAAAGA+TGG - Chr1:69295413-69295432 None:intergenic 40.0%
AGGGTAGCTGGAATTTCATT+TGG + Chr1:69297906-69297925 MsG0180003858.01.T01:intron 40.0%
ATCATTTCCTACATCAGTGC+AGG + Chr1:69297043-69297062 MsG0180003858.01.T01:CDS 40.0%
ATCGATGAATTGTCTGTCAC+AGG + Chr1:69298844-69298863 MsG0180003858.01.T01:CDS 40.0%
CAACGTTGTGCTAGAATGTA+TGG + Chr1:69294396-69294415 MsG0180003858.01.T01:intron 40.0%
CATGTATATTCGTTAGGGGA+AGG + Chr1:69295220-69295239 MsG0180003858.01.T01:CDS 40.0%
CTAATGTTCATCAAGGAACC+TGG - Chr1:69297839-69297858 None:intergenic 40.0%
CTGTTACTGGAAAACATCAG+TGG + Chr1:69295354-69295373 MsG0180003858.01.T01:CDS 40.0%
CTTGAAATTGACAGCGATCA+AGG + Chr1:69296513-69296532 MsG0180003858.01.T01:CDS 40.0%
GCAGAGAATACGAAACAAGT+AGG + Chr1:69296573-69296592 MsG0180003858.01.T01:CDS 40.0%
GCATTCACAGATGACAGAAA+AGG - Chr1:69296260-69296279 None:intergenic 40.0%
GGTATCCTCGTAAAAAGACT+CGG - Chr1:69296784-69296803 None:intergenic 40.0%
TCATGTAACTCATAACCAGC+AGG - Chr1:69296825-69296844 None:intergenic 40.0%
TCCAACCATACTGTAGAAAC+AGG - Chr1:69295327-69295346 None:intergenic 40.0%
TCGATGAATTGTCTGTCACA+GGG + Chr1:69298845-69298864 MsG0180003858.01.T01:CDS 40.0%
TCGCAACAGATAATCCTAGA+GGG - Chr1:69295189-69295208 None:intergenic 40.0%
TGGAAGAAGGAGAAGAAGAT+GGG + Chr1:69294300-69294319 MsG0180003858.01.T01:intron 40.0%
TGGCCCAACAGATATTGAAT+AGG - Chr1:69294886-69294905 None:intergenic 40.0%
TGTGAATGTTGTTGCCAATG+CGG + Chr1:69295676-69295695 MsG0180003858.01.T01:intron 40.0%
TTCGCAACAGATAATCCTAG+AGG - Chr1:69295190-69295209 None:intergenic 40.0%
TTTCTACAGTATGGTTGGAC+AGG + Chr1:69295328-69295347 MsG0180003858.01.T01:intron 40.0%
TTTCTGTCATCTGTGAATGC+AGG + Chr1:69296260-69296279 MsG0180003858.01.T01:intron 40.0%
! AATAGCTTTTCCCAGGACAT+TGG - Chr1:69296440-69296459 None:intergenic 40.0%
! ACAACAACAGGGTTCAAGTT+GGG + Chr1:69298338-69298357 MsG0180003858.01.T01:CDS 40.0%
! ATAGCTTTTCCCAGGACATT+GGG - Chr1:69296439-69296458 None:intergenic 40.0%
! ATGCATGTGTTTTGTGGTTG+AGG + Chr1:69298648-69298667 MsG0180003858.01.T01:CDS 40.0%
! ATGTAAGGCTTGGTAAGTCA+GGG - Chr1:69296081-69296100 None:intergenic 40.0%
! ATGTGTTTTGTGGTTGAGGT+AGG + Chr1:69298652-69298671 MsG0180003858.01.T01:intron 40.0%
! GAAGACATGCATGTGTTTTG+TGG + Chr1:69298642-69298661 MsG0180003858.01.T01:CDS 40.0%
! GAGTGGAATTAGGCTTTGAT+CGG + Chr1:69297777-69297796 MsG0180003858.01.T01:intron 40.0%
! GATTCTCTTTTGAACCGCAT+TGG - Chr1:69295693-69295712 None:intergenic 40.0%
! GATTTTTCACATGACCCTCT+AGG + Chr1:69295172-69295191 MsG0180003858.01.T01:CDS 40.0%
! GCCTTTGTTTGGATACTGAT+TGG + Chr1:69294349-69294368 MsG0180003858.01.T01:intron 40.0%
! GGATAGGTTGTTATTGGCAA+CGG + Chr1:69294061-69294080 MsG0180003858.01.T01:CDS 40.0%
! TGACATCGATTGAAGCAAGA+TGG - Chr1:69296541-69296560 None:intergenic 40.0%
! TTAAGAGAACTGGTGCCAAA+CGG + Chr1:69297374-69297393 MsG0180003858.01.T01:CDS 40.0%
! TTCACGCTTTGGATTTGACT+AGG - Chr1:69296363-69296382 None:intergenic 40.0%
! TTGGGACTGACGATTTTGAA+CGG + Chr1:69298598-69298617 MsG0180003858.01.T01:CDS 40.0%
!! ACGTCTTATTGGCTTTGAGA+TGG + Chr1:69297633-69297652 MsG0180003858.01.T01:intron 40.0%
!! GTGCAGTATTGATTCACTGT+TGG + Chr1:69297521-69297540 MsG0180003858.01.T01:intron 40.0%
!! GTTCTGAGAGCACATACTTT+GGG - Chr1:69295128-69295147 None:intergenic 40.0%
!! TCCTGTTTCTACAGTATGGT+TGG + Chr1:69295323-69295342 MsG0180003858.01.T01:intron 40.0%
!! TGTTCTGAGAGCACATACTT+TGG - Chr1:69295129-69295148 None:intergenic 40.0%
!!! CACCTTACAAGTTGGTTTTG+TGG + Chr1:69294819-69294838 MsG0180003858.01.T01:intron 40.0%
!!! CCTTACAAGTTGGTTTTGTG+GGG + Chr1:69294821-69294840 MsG0180003858.01.T01:intron 40.0%
!!! CTAGTCCATCTTTTAAGGTG+AGG + Chr1:69295405-69295424 MsG0180003858.01.T01:intron 40.0%
!!! GGCCAACCCAAATTTTTAGT+TGG + Chr1:69294852-69294871 MsG0180003858.01.T01:intron 40.0%
AAACCAAAGCCTACTGAGAC+AGG - Chr1:69297437-69297456 None:intergenic 45.0%
AAAGTTGTAGGCCTAGACCA+AGG + Chr1:69297318-69297337 MsG0180003858.01.T01:CDS 45.0%
AACTGCGCAGTTGCATCATA+TGG + Chr1:69298284-69298303 MsG0180003858.01.T01:intron 45.0%
AACTGGTTACTACACGAGCT+AGG - Chr1:69297245-69297264 None:intergenic 45.0%
AAGTTGTAGGCCTAGACCAA+GGG + Chr1:69297319-69297338 MsG0180003858.01.T01:CDS 45.0%
AATCCTGTCTCAGTAGGCTT+TGG + Chr1:69297431-69297450 MsG0180003858.01.T01:intron 45.0%
AATTTCAAGCCCCTCGTGTT+TGG - Chr1:69296502-69296521 None:intergenic 45.0%
ACCTATGCCATTGTAACCCA+GGG + Chr1:69297887-69297906 MsG0180003858.01.T01:intron 45.0%
ACCTTGGAGCAGATCTATGT+TGG + Chr1:69295148-69295167 MsG0180003858.01.T01:CDS 45.0%
ATCAAGTGTTTCACCCGTCA+TGG - Chr1:69296403-69296422 None:intergenic 45.0%
ATTGATGTGGCCAAACACGA+GGG + Chr1:69296489-69296508 MsG0180003858.01.T01:CDS 45.0%
CAAGATACCTTTGCTCCGTT+TGG - Chr1:69297392-69297411 None:intergenic 45.0%
CAGCATGCTTAGTTACGCTT+TGG - Chr1:69297575-69297594 None:intergenic 45.0%
CCACTTGGAGTTGTTCAACT+TGG + Chr1:69295584-69295603 MsG0180003858.01.T01:CDS 45.0%
CCCCACAAAACCAACTTGTA+AGG - Chr1:69294824-69294843 None:intergenic 45.0%
CGTGTAGTAACCAGTTTGAG+AGG + Chr1:69297249-69297268 MsG0180003858.01.T01:CDS 45.0%
GACGGGTGAAACACTTGATA+TGG + Chr1:69296404-69296423 MsG0180003858.01.T01:CDS 45.0%
GCTTGTCAACATGTAAGGCT+TGG - Chr1:69296091-69296110 None:intergenic 45.0%
GGGTAGGGATAGGTTGTTAT+TGG + Chr1:69294055-69294074 MsG0180003858.01.T01:CDS 45.0%
GTCAAGACTTGACATCTGGA+GGG - Chr1:69294933-69294952 None:intergenic 45.0%
GTGGAAGAAGGAGAAGAAGA+TGG + Chr1:69294299-69294318 MsG0180003858.01.T01:intron 45.0%
GTGTGTTACGTTTCACGCTT+TGG - Chr1:69296374-69296393 None:intergenic 45.0%
GTTACAATGGCATAGGTGTG+AGG - Chr1:69297884-69297903 None:intergenic 45.0%
GTTCAGAAGACCTCTCAAAC+TGG - Chr1:69297262-69297281 None:intergenic 45.0%
GTTCCAATTCTTGTGGCTGA+AGG + Chr1:69297478-69297497 MsG0180003858.01.T01:intron 45.0%
TACATCAGTGCAGGACACAA+TGG + Chr1:69297052-69297071 MsG0180003858.01.T01:CDS 45.0%
TATGTGCTCTCAGAACACCT+TGG + Chr1:69295132-69295151 MsG0180003858.01.T01:CDS 45.0%
TATTGATGTGGCCAAACACG+AGG + Chr1:69296488-69296507 MsG0180003858.01.T01:CDS 45.0%
TCCAACATAGATCTGCTCCA+AGG - Chr1:69295152-69295171 None:intergenic 45.0%
TGCTTGCAGGATCTTGACAT+GGG + Chr1:69295063-69295082 MsG0180003858.01.T01:intron 45.0%
TGTCAAGACTTGACATCTGG+AGG - Chr1:69294934-69294953 None:intergenic 45.0%
TGTCATCTGTGAATGCAGGT+TGG + Chr1:69296264-69296283 MsG0180003858.01.T01:intron 45.0%
TTGAGTTTGTCAGGGATCTG+CGG + Chr1:69297185-69297204 MsG0180003858.01.T01:CDS 45.0%
TTGCTTGCAGGATCTTGACA+TGG + Chr1:69295062-69295081 MsG0180003858.01.T01:intron 45.0%
! AGGTTGTTATTGGCAACGGT+CGG + Chr1:69294065-69294084 MsG0180003858.01.T01:CDS 45.0%
! ATCTCGTCCGGAACATCTTT+TGG + Chr1:69296965-69296984 MsG0180003858.01.T01:CDS 45.0%
! ATTGTGTCCTGCACTGATGT+AGG - Chr1:69297053-69297072 None:intergenic 45.0%
! CATAGGTGTGAGGTATCCAT+TGG - Chr1:69297874-69297893 None:intergenic 45.0%
! CATGTAAGGCTTGGTAAGTC+AGG - Chr1:69296082-69296101 None:intergenic 45.0%
! CCAAGTTGAACAACTCCAAG+TGG - Chr1:69295587-69295606 None:intergenic 45.0%
! CGCTTTGGATTTGACTAGGA+AGG - Chr1:69296359-69296378 None:intergenic 45.0%
! GGAGATGAATAGCTTTTCCC+AGG - Chr1:69296447-69296466 None:intergenic 45.0%
! TCAGACCGAGTCTTTTTACG+AGG + Chr1:69296776-69296795 MsG0180003858.01.T01:CDS 45.0%
! TTACATGAAGCACTTGGACC+AGG + Chr1:69296837-69296856 MsG0180003858.01.T01:CDS 45.0%
!! AATGCAGGTTGGTGAAGACA+TGG + Chr1:69296275-69296294 MsG0180003858.01.T01:intron 45.0%
!! ATGCAGGTTGGTGAAGACAT+GGG + Chr1:69296276-69296295 MsG0180003858.01.T01:intron 45.0%
!! CTTGGTGGTGATTGAAGCAT+TGG + Chr1:69295843-69295862 MsG0180003858.01.T01:intron 45.0%
!! GGAACATCTTTTGGAAGCAG+TGG + Chr1:69296974-69296993 MsG0180003858.01.T01:CDS 45.0%
!!! GGTTTCTTTTTTTGAGGGGG+TGG + Chr1:69294190-69294209 MsG0180003858.01.T01:intron 45.0%
!!! TGGTTTTGTGGGGTTGAGTT+AGG + Chr1:69294831-69294850 MsG0180003858.01.T01:intron 45.0%
!!! TTCTTTTTTTGAGGGGGTGG+TGG + Chr1:69294193-69294212 MsG0180003858.01.T01:intron 45.0%
ACCCTGGGTTACAATGGCAT+AGG - Chr1:69297891-69297910 None:intergenic 50.0%
AGACTAGGGACTAGGGACTA+GGG + Chr1:69294224-69294243 MsG0180003858.01.T01:intron 50.0%
AGCAGAAGCCGTAAGAAGCT+TGG + Chr1:69298579-69298598 MsG0180003858.01.T01:CDS 50.0%
AGGAGGAAACAAGCTGGAAG+AGG + Chr1:69294116-69294135 MsG0180003858.01.T01:CDS 50.0%
AGTTGTCTGTCCCTTGGTCT+AGG - Chr1:69297332-69297351 None:intergenic 50.0%
CACCTATGCCATTGTAACCC+AGG + Chr1:69297886-69297905 MsG0180003858.01.T01:intron 50.0%
CACCTGCTATCAGATCACCT+GGG + Chr1:69294904-69294923 MsG0180003858.01.T01:intron 50.0%
CATGCTACAGATGCTCTGTG+AGG + Chr1:69298534-69298553 MsG0180003858.01.T01:intron 50.0%
CGTCAGTCCCAAGCTTCTTA+CGG - Chr1:69298590-69298609 None:intergenic 50.0%
CTAGGCCAGGTGAAAGTTGT+AGG + Chr1:69297306-69297325 MsG0180003858.01.T01:CDS 50.0%
CTAGGCCTACAACTTTCACC+TGG - Chr1:69297314-69297333 None:intergenic 50.0%
GCAGAAGCCGTAAGAAGCTT+GGG + Chr1:69298580-69298599 MsG0180003858.01.T01:CDS 50.0%
GGAGGAAACAAGCTGGAAGA+GGG + Chr1:69294117-69294136 MsG0180003858.01.T01:CDS 50.0%
GGGTGTCTCACCTTACAAGT+TGG + Chr1:69294811-69294830 MsG0180003858.01.T01:intron 50.0%
GTCGTAGCAGTACTACCACT+TGG + Chr1:69295569-69295588 MsG0180003858.01.T01:CDS 50.0%
GTTGGACAGGTAGCTGTTAC+TGG + Chr1:69295341-69295360 MsG0180003858.01.T01:CDS 50.0%
TGATGCAACTGCGCAGTTGT+AGG - Chr1:69298282-69298301 None:intergenic 50.0%
TGGATCAGTTGTCTGTCCCT+TGG - Chr1:69297338-69297357 None:intergenic 50.0%
TTGATGTGGCCAAACACGAG+GGG + Chr1:69296490-69296509 MsG0180003858.01.T01:CDS 50.0%
TTGCAGGATCTTGACATGGG+AGG + Chr1:69295066-69295085 MsG0180003858.01.T01:intron 50.0%
TTGGTGTGGCAATTGCTTGC+AGG + Chr1:69295050-69295069 MsG0180003858.01.T01:intron 50.0%
! CTTTTCCCAGGACATTGGGA+GGG - Chr1:69296435-69296454 None:intergenic 50.0%
! GAATGGGCAGATGCTTGTTG+AGG + Chr1:69298419-69298438 MsG0180003858.01.T01:CDS 50.0%
! GCTGGAAGAGGGTCTTATAG+AGG + Chr1:69294128-69294147 MsG0180003858.01.T01:intron 50.0%
!! AACCCTGCTCGCCGTTTTAA+TGG - Chr1:69294095-69294114 None:intergenic 50.0%
!! ACAGGGTTCAAGTTGGGCAA+TGG + Chr1:69298344-69298363 MsG0180003858.01.T01:CDS 50.0%
!! TCAAGTTGGGCAATGGAGGT+AGG + Chr1:69298351-69298370 MsG0180003858.01.T01:CDS 50.0%
!! TGCAGGTTGGTGAAGACATG+GGG + Chr1:69296277-69296296 MsG0180003858.01.T01:intron 50.0%
!!! TTTTTTGAGGGGGTGGTGGT+GGG + Chr1:69294197-69294216 MsG0180003858.01.T01:intron 50.0%
!!! TTTTTTTGAGGGGGTGGTGG+TGG + Chr1:69294196-69294215 MsG0180003858.01.T01:intron 50.0%
AACGGTGCAAGTGAAGCTCG+TGG + Chr1:69298616-69298635 MsG0180003858.01.T01:CDS 55.0%
AGCAAAAAGAGGGCTAGGCC+AGG + Chr1:69297293-69297312 MsG0180003858.01.T01:CDS 55.0%
AGTTGGGCAATGGAGGTAGG+AGG + Chr1:69298354-69298373 MsG0180003858.01.T01:CDS 55.0%
CCACCTGCTATCAGATCACC+TGG + Chr1:69294903-69294922 MsG0180003858.01.T01:intron 55.0%
CCAGCTACCCTGGGTTACAA+TGG - Chr1:69297897-69297916 None:intergenic 55.0%
CCAGGTGATCTGATAGCAGG+TGG - Chr1:69294906-69294925 None:intergenic 55.0%
CCATTGTAACCCAGGGTAGC+TGG + Chr1:69297894-69297913 MsG0180003858.01.T01:intron 55.0%
CGCCATTAAAACGGCGAGCA+GGG + Chr1:69294090-69294109 MsG0180003858.01.T01:CDS 55.0%
CGGTCGGACCGCCATTAAAA+CGG + Chr1:69294081-69294100 MsG0180003858.01.T01:CDS 55.0%
GACCCAGGTGATCTGATAGC+AGG - Chr1:69294909-69294928 None:intergenic 55.0%
GAGACTAGGGACTAGGGACT+AGG + Chr1:69294223-69294242 MsG0180003858.01.T01:intron 55.0%
GGGAGAGAGACTAGGGACTA+GGG + Chr1:69294217-69294236 MsG0180003858.01.T01:intron 55.0%
GGGTTGAGGAGGAAACAAGC+TGG + Chr1:69294110-69294129 MsG0180003858.01.T01:CDS 55.0%
TAAAACGGCGAGCAGGGTTG+AGG + Chr1:69294096-69294115 MsG0180003858.01.T01:CDS 55.0%
TAACGCCCTCCCAATGTCCT+GGG + Chr1:69296427-69296446 MsG0180003858.01.T01:CDS 55.0%
TGGGAGAGAGACTAGGGACT+AGG + Chr1:69294216-69294235 MsG0180003858.01.T01:intron 55.0%
! ACTGGTGCCAAACGGAGCAA+AGG + Chr1:69297382-69297401 MsG0180003858.01.T01:CDS 55.0%
! GCTTTTCCCAGGACATTGGG+AGG - Chr1:69296436-69296455 None:intergenic 55.0%
!! CCTGCTCGCCGTTTTAATGG+CGG - Chr1:69294092-69294111 None:intergenic 55.0%
!! GGGTTCAAGTTGGGCAATGG+AGG + Chr1:69298347-69298366 MsG0180003858.01.T01:CDS 55.0%
!! TGGTGGTGGGAGAGAGACTA+GGG + Chr1:69294210-69294229 MsG0180003858.01.T01:intron 55.0%
CCGCCATTAAAACGGCGAGC+AGG + Chr1:69294089-69294108 MsG0180003858.01.T01:CDS 60.0%
GTAACGCCCTCCCAATGTCC+TGG + Chr1:69296426-69296445 MsG0180003858.01.T01:CDS 60.0%
TGACATCTGGAGGGTGACCC+AGG - Chr1:69294924-69294943 None:intergenic 60.0%
!! GTGGTGGTGGGAGAGAGACT+AGG + Chr1:69294209-69294228 MsG0180003858.01.T01:intron 60.0%
AACGGCGAGCAGGGTTGAGG+AGG + Chr1:69294099-69294118 MsG0180003858.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 69294053 69298891 69294053 ID=MsG0180003858.01;Name=MsG0180003858.01
Chr1 mRNA 69294053 69298891 69294053 ID=MsG0180003858.01.T01;Parent=MsG0180003858.01;Name=MsG0180003858.01.T01;_AED=0.50;_eAED=0.53;_QI=0|0.62|0.66|1|1|1|9|0|659
Chr1 exon 69294053 69294138 69294053 ID=MsG0180003858.01.T01:exon:27033;Parent=MsG0180003858.01.T01
Chr1 exon 69295072 69295242 69295072 ID=MsG0180003858.01.T01:exon:27032;Parent=MsG0180003858.01.T01
Chr1 exon 69295337 69295421 69295337 ID=MsG0180003858.01.T01:exon:27031;Parent=MsG0180003858.01.T01
Chr1 exon 69295539 69295619 69295539 ID=MsG0180003858.01.T01:exon:27030;Parent=MsG0180003858.01.T01
Chr1 exon 69296282 69297403 69296282 ID=MsG0180003858.01.T01:exon:27029;Parent=MsG0180003858.01.T01
Chr1 exon 69297522 69297629 69297522 ID=MsG0180003858.01.T01:exon:27028;Parent=MsG0180003858.01.T01
Chr1 exon 69298294 69298440 69298294 ID=MsG0180003858.01.T01:exon:27027;Parent=MsG0180003858.01.T01
Chr1 exon 69298544 69298669 69298544 ID=MsG0180003858.01.T01:exon:27026;Parent=MsG0180003858.01.T01
Chr1 exon 69298838 69298891 69298838 ID=MsG0180003858.01.T01:exon:27025;Parent=MsG0180003858.01.T01
Chr1 CDS 69294053 69294138 69294053 ID=MsG0180003858.01.T01:cds;Parent=MsG0180003858.01.T01
Chr1 CDS 69295072 69295242 69295072 ID=MsG0180003858.01.T01:cds;Parent=MsG0180003858.01.T01
Chr1 CDS 69295337 69295421 69295337 ID=MsG0180003858.01.T01:cds;Parent=MsG0180003858.01.T01
Chr1 CDS 69295539 69295619 69295539 ID=MsG0180003858.01.T01:cds;Parent=MsG0180003858.01.T01
Chr1 CDS 69296282 69297403 69296282 ID=MsG0180003858.01.T01:cds;Parent=MsG0180003858.01.T01
Chr1 CDS 69297522 69297629 69297522 ID=MsG0180003858.01.T01:cds;Parent=MsG0180003858.01.T01
Chr1 CDS 69298294 69298440 69298294 ID=MsG0180003858.01.T01:cds;Parent=MsG0180003858.01.T01
Chr1 CDS 69298544 69298669 69298544 ID=MsG0180003858.01.T01:cds;Parent=MsG0180003858.01.T01
Chr1 CDS 69298838 69298891 69298838 ID=MsG0180003858.01.T01:cds;Parent=MsG0180003858.01.T01
Gene Sequence

>MsG0180003858.01.T01

ATGGGTAGGGATAGGTTGTTATTGGCAACGGTCGGACCGCCATTAAAACGGCGAGCAGGGTTGAGGAGGAAACAAGCTGGAAGAGGGATCTTGACATGGGAGGATGCTTACTATGACAACCCTGATAATTGTGATTCTTCCCAAAGTATGTGCTCTCAGAACACCTTGGAGCAGATCTATGTTGGAGATTTTTCACATGACCCTCTAGGATTATCTGTTGCGAAGATGCCGTATCATGTATATTCGTTAGGGGAAGGTATGGTTGGACAGGTAGCTGTTACTGGAAAACATCAGTGGATCTGTGCAGATAATCAAGTTACAATTTCTAGTCCATCTTTTAAGAGCTTTGCCTTGCATTTACAGACAATTGTTGTCGTAGCAGTACTACCACTTGGAGTTGTTCAACTTGGATCCTTAAATAAAGTTGGTGAAGACATGGGGTTTGTAACTCACATAAGAAGTCTCTTTTTGTCTATTCGTGATCACACATTAGGTTGCCTTCCTAGTCAAATCCAAAGCGTGAAACGTAACACACAGAAAACCATGACGGGTGAAACACTTGATATGGTAACGCCCTCCCAATGTCCTGGGAAAAGCTATTCATCTCCTACTGTTTATCAGAAAATGACTATTGATGTGGCCAAACACGAGGGGCTTGAAATTGACAGCGATCAAGGTTCCATCTTGCTTCAATCGATGTCAAATATGATGACTGCAGAGAATACGAAACAAGTAGGGATGAAACCTTCAAATGAAAGGATGTGTGAAGGGAACAATAATGGCTGCAAAGATACTAGTTTGAAACCAGACAAAAATGTCTCATCGTTTTTACACAATTCAGTTATGGATTATAATAGTACCAAAGATTTAACAAGTCCATCAGAAAATGTAGAAGCTGATACTGAGATGTCAAAGTTTCAGACCGAGTCTTTTTACGAGGATACCTCATACACATTGAAATTTCCTGCTGGTTATGAGTTACATGAAGCACTTGGACCAGGTTTTCTCAAAGAGAGTAAATATTTTGATTGGACGGTACAAGGAAATCAAGATAGTAAAGCTTCTGAGATGTCAGATGAGATTAGCTGCAGCCAATTGACTTTTGAATCTCGTCCGGAACATCTTTTGGAAGCAGTGGTGACCAAAGTTTGCCATAGTAATAATGATATTGTAGATAATGAGGTATCATTTCCTACATCAGTGCAGGACACAATGGTCTCTAGAAGAAAACCTGAAGTTTCTGTTCATAATGACCGAAATATTAATTCAGAAGGCTATTCAATTGATCAACCATCTCATATTAAAGAGGATATGCACCATCATAGTTTGAGTTTGTCAGGGATCTGCGGTGTGATATCCCCCAAAAGTTTTTCTTCTACATGTCCTAGCTCGTGTAGTAACCAGTTTGAGAGGTCTTCTGAACCATCTAAAAACAGCAAAAAGAGGGCTAGGCCAGGTGAAAGTTGTAGGCCTAGACCAAGGGACAGACAACTGATCCAAGACCGTATTAAGGAGTTAAGAGAACTGGTGCCAAACGGAGCAAAGTGCAGTATTGATTCACTGTTGGAGTGCACAATAAAGCACATGCTCTTTCTCCAAAGCGTAACTAAGCATGCTGACAAGATAAATAAATTTTCTAAAACAAAGACAAAGTTGCATCATATGGAAAATGACATTCATGGATCCTCTGATTATCAACAACAACAGGGTTCAAGTTGGGCAATGGAGGTAGGAGGCCATCTGAAAATTCATTCAGTATTAGTAGAAAATCTTAGTAAGAATGGGCAGATGCTTGTTGAGATGCTCTGTGAGGAGTGCAGCCATTTTCTTGAGATAGCAGAAGCCGTAAGAAGCTTGGGACTGACGATTTTGAACGGTGCAAGTGAAGCTCGTGGTGAGAAGACATGCATGTGTTTTGTGGTTGAGATATTGATCGATGAATTGTCTGTCACAGGGCCAAAACAACAGAAATGTACATAG

Protein sequence

>MsG0180003858.01.T01

MGRDRLLLATVGPPLKRRAGLRRKQAGRGILTWEDAYYDNPDNCDSSQSMCSQNTLEQIYVGDFSHDPLGLSVAKMPYHVYSLGEGMVGQVAVTGKHQWICADNQVTISSPSFKSFALHLQTIVVVAVLPLGVVQLGSLNKVGEDMGFVTHIRSLFLSIRDHTLGCLPSQIQSVKRNTQKTMTGETLDMVTPSQCPGKSYSSPTVYQKMTIDVAKHEGLEIDSDQGSILLQSMSNMMTAENTKQVGMKPSNERMCEGNNNGCKDTSLKPDKNVSSFLHNSVMDYNSTKDLTSPSENVEADTEMSKFQTESFYEDTSYTLKFPAGYELHEALGPGFLKESKYFDWTVQGNQDSKASEMSDEISCSQLTFESRPEHLLEAVVTKVCHSNNDIVDNEVSFPTSVQDTMVSRRKPEVSVHNDRNINSEGYSIDQPSHIKEDMHHHSLSLSGICGVISPKSFSSTCPSSCSNQFERSSEPSKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLECTIKHMLFLQSVTKHADKINKFSKTKTKLHHMENDIHGSSDYQQQQGSSWAMEVGGHLKIHSVLVENLSKNGQMLVEMLCEECSHFLEIAEAVRSLGLTILNGASEARGEKTCMCFVVEILIDELSVTGPKQQKCT*