AlfalfaGEDB | MsG0580025486.01

M. sativa cultivar ZhongmuNo.1 / MsG0580025486.01

KEGG: -
GO: -
PFAM: PF04755

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025486.01.T01	XP_003612834.1	70.312	320	34	5	2	320	96	355	1.10E-120	361

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025486.01.T01	Q9ZP40	63.58	324	53	6	2	320	94	357	9.86E-118	346

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047831.01	MsG0580025486.01	-0.816934	4.281220e-52	3.075205e-49
MsG0080047967.01	MsG0580025486.01	0.894347	2.687028e-75	2.661260e-71
MsG0080048036.01	MsG0580025486.01	-0.812518	4.071511e-51	2.594284e-48
MsG0080048059.01	MsG0580025486.01	0.880719	4.352651e-70	2.480906e-66
MsG0080048202.01	MsG0580025486.01	-0.827957	1.174094e-54	1.150799e-51
MsG0080048347.01	MsG0580025486.01	-0.814258	1.688590e-51	1.127512e-48
MsG0080048352.01	MsG0580025486.01	-0.803466	3.439246e-49	1.729544e-46
MsG0080048486.01	MsG0580025486.01	-0.809003	2.345612e-50	1.361200e-47
MsG0080048487.01	MsG0580025486.01	-0.811457	6.935826e-51	4.295550e-48
MsG0080048488.01	MsG0580025486.01	-0.812865	3.419378e-51	2.198501e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025486.01.T01	MTR_5g029590	70.312	320	34	5	2	320	96	355	1.34e-124	361
MsG0580025486.01.T01	MTR_2g025050	35.855	304	132	5	18	319	73	315	5.93e-44	153
MsG0580025486.01.T01	MTR_2g025040	42.308	104	59	1	217	319	211	314	1.54e-22	96.3
MsG0580025486.01.T01	MTR_2g025040	48.438	64	33	0	34	97	88	151	2.48e-13	70.1
MsG0580025486.01.T01	MTR_1g099880	38.182	110	48	1	34	143	32	121	1.43e-16	77.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025486.01.T01	AT2G35490	50.325	308	83	6	13	320	138	375	1.05e-81	252
MsG0580025486.01.T01	AT4G22240	37.097	310	132	7	13	320	61	309	2.32e-57	187
MsG0580025486.01.T01	AT4G04020	37.671	292	121	4	30	320	86	317	8.48e-54	179

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Find 161 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAATAATATATATGATT+TGG	0.238665	5:+19526513	MsG0580025486.01.T01:three_prime_UTR
AACCGAACCTGAAACCTTGG+AGG	0.564163	5:-19522525	None:intergenic
AACGAGGATGAATGGGGAGA+AGG	0.562177	5:+19522557	MsG0580025486.01.T01:exon
AAGAGAGAGAAGAAGGTTTA+GGG	0.248806	5:-19522337	None:intergenic
AAGGACTTGAGAATATCAAG+GGG	0.684464	5:+19526159	MsG0580025486.01.T01:CDS
AAGGGAATCGGTGAGGAGCG+AGG	0.594995	5:-19522385	None:intergenic
AAGGGAATGAAGAACTTGAG+CGG	0.679326	5:+19522656	MsG0580025486.01.T01:CDS
AATAATAATATATATGATTT+GGG	0.324183	5:+19526514	MsG0580025486.01.T01:three_prime_UTR
AATATATATGATTTGGGTTA+AGG	0.301373	5:+19526520	MsG0580025486.01.T01:three_prime_UTR
AATATATCACGTGTCATTTC+AGG	0.334503	5:+19526066	MsG0580025486.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAACCCTAGATGAGAT+GGG	+	Chr5:19524262-19524281	MsG0580025486.01.T01:intron	30.0%
AAAAACAATACTGTGAACTC+AGG	-	Chr5:19525651-19525670	None:intergenic	30.0%
AATAGCTCTTACAGAAGAAA+AGG	-	Chr5:19525122-19525141	None:intergenic	30.0%
AATCAGGTTACATTCAAAGA+AGG	+	Chr5:19525919-19525938	MsG0580025486.01.T01:intron	30.0%
ACGGTTGAAACTGAAAAATT+TGG	-	Chr5:19522261-19522280	None:intergenic	30.0%
ACTGAGAATTCAAGTATCAA+TGG	-	Chr5:19525176-19525195	None:intergenic	30.0%
ACTTATTTGAGCTTATCTAC+TGG	-	Chr5:19523543-19523562	None:intergenic	30.0%
ACTTTGCATTGAAAACATAG+AGG	+	Chr5:19523591-19523610	MsG0580025486.01.T01:intron	30.0%
AGAAGAAAAGGAAATAACCA+AGG	-	Chr5:19525110-19525129	None:intergenic	30.0%
AGAGCTTCTTAATGGAAATT+GGG	+	Chr5:19522816-19522835	MsG0580025486.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	19522112	19526547	19522112	ID=MsG0580025486.01;Name=MsG0580025486.01
Chr5	mRNA	19522112	19526547	19522112	ID=MsG0580025486.01.T01;Parent=MsG0580025486.01;Name=MsG0580025486.01.T01;_AED=0.30;_eAED=0.41;_QI=456\|0\|0.4\|1\|1\|1\|5\|314\|320
Chr5	exon	19522112	19522845	19522112	ID=MsG0580025486.01.T01:exon:8256;Parent=MsG0580025486.01.T01
Chr5	exon	19522961	19523021	19522961	ID=MsG0580025486.01.T01:exon:8257;Parent=MsG0580025486.01.T01
Chr5	exon	19523733	19523845	19523733	ID=MsG0580025486.01.T01:exon:8258;Parent=MsG0580025486.01.T01
Chr5	exon	19524858	19525059	19524858	ID=MsG0580025486.01.T01:exon:8259;Parent=MsG0580025486.01.T01
Chr5	exon	19525925	19526547	19525925	ID=MsG0580025486.01.T01:exon:8260;Parent=MsG0580025486.01.T01
Chr5	five_prime_UTR	19522112	19522567	19522112	ID=MsG0580025486.01.T01:five_prime_utr;Parent=MsG0580025486.01.T01
Chr5	CDS	19522568	19522845	19522568	ID=MsG0580025486.01.T01:cds;Parent=MsG0580025486.01.T01
Chr5	CDS	19522961	19523021	19522961	ID=MsG0580025486.01.T01:cds;Parent=MsG0580025486.01.T01
Chr5	CDS	19523733	19523845	19523733	ID=MsG0580025486.01.T01:cds;Parent=MsG0580025486.01.T01
Chr5	CDS	19524858	19525059	19524858	ID=MsG0580025486.01.T01:cds;Parent=MsG0580025486.01.T01
Chr5	CDS	19525925	19526233	19525925	ID=MsG0580025486.01.T01:cds;Parent=MsG0580025486.01.T01
Chr5	three_prime_UTR	19526234	19526547	19526234	ID=MsG0580025486.01.T01:three_prime_utr;Parent=MsG0580025486.01.T01

Gene Sequence

>MsG0580025486.01.T01

ATGGGGAGAAGGAGCGAAAATGACGCCGGGAGCTATAGCGATGCTGGAAATGGAACTCCGGCTTCTGCTACCGAAGCTCCGGTGGAGGAAGGGAATGAAGAACTTGAGCGGTTGAAACGTGCTCTTGTTGATACGGTTTATGGGACTGAGCTTGGGTTTCGAGCTGGGTCGGAGGTTCGAGCTGAGGTGTCGGAGTTCGTGGCTCAGCTGGAAGCTTCTAACCCTACCGCTGCTCCGGTTGAGGAACCAGAGCTTCTTAATGGAAATTGGGTGTTGCTTTATAATAAATTCAAACATGTGAAACTTTCGAATGAGTCTTTTACAAATTTTAATCATAGGGTACCAGCATCTTCTGAACTGTTGCCTCTTCTAGCAGCAGGAGCATTACCTTTGGTGAAGGTGGATAAAATCTTGCAAACAATTGATACCTATAGCTCCACTGTTGTGAACTCGCTTCCATGTGGATACTGGGTGTTGACCCCCATAGGTCAGCAATTTGGAAAGTGTATGTCAGGAAAAGGAGAAGGGGGTGCAGGGAAGAATGTAGTTACAATTGGTGAGGTGGTAGGAATATTCTCTAGGTGGTTAGATGAGAGAGTATGTAATGATGAGATAGTGAGTGAGAGAATCATTCATGCTTTTGGTGATTTGTTGGTTACATTCAAAGAAGGATCACTACAGCCTCCAGAGATAAAGTCTAAAATTGACCTACCAGAAAACATAAACATTTTTGGCCAAAATCTTAGCCTGGGGCCTCTGCAACAGTCTCTCGGTCCTCTGGAGAATGTGGTTGCCAATATATCACGTGTCATTTCAGGTCAGTCACCTCTTAAGATTCCCATACCTGGTGAGAGGACAAGCTCTTGGCTTCTTACCACATACCTTGATAAGGACTTGAGAATATCAAGGGGAGATGGCGGTTTGTTTGTCCTTGCAAGAGAAGGGAGTCCCCTTCTTGATTAG

Protein sequence

>MsG0580025486.01.T01

MGRRSENDAGSYSDAGNGTPASATEAPVEEGNEELERLKRALVDTVYGTELGFRAGSEVRAEVSEFVAQLEASNPTAAPVEEPELLNGNWVLLYNKFKHVKLSNESFTNFNHRVPASSELLPLLAAGALPLVKVDKILQTIDTYSSTVVNSLPCGYWVLTPIGQQFGKCMSGKGEGGAGKNVVTIGEVVGIFSRWLDERVCNDEIVSERIIHAFGDLLVTFKEGSLQPPEIKSKIDLPENINIFGQNLSLGPLQQSLGPLENVVANISRVISGQSPLKIPIPGERTSSWLLTTYLDKDLRISRGDGGLFVLAREGSPLLD*