AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025486.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025486.01.T01 MTR_5g029590 70.312 320 34 5 2 320 96 355 1.34e-124 361
MsG0580025486.01.T01 MTR_2g025050 35.855 304 132 5 18 319 73 315 5.93e-44 153
MsG0580025486.01.T01 MTR_2g025040 42.308 104 59 1 217 319 211 314 1.54e-22 96.3
MsG0580025486.01.T01 MTR_2g025040 48.438 64 33 0 34 97 88 151 2.48e-13 70.1
MsG0580025486.01.T01 MTR_1g099880 38.182 110 48 1 34 143 32 121 1.43e-16 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025486.01.T01 AT2G35490 50.325 308 83 6 13 320 138 375 1.05e-81 252
MsG0580025486.01.T01 AT4G22240 37.097 310 132 7 13 320 61 309 2.32e-57 187
MsG0580025486.01.T01 AT4G04020 37.671 292 121 4 30 320 86 317 8.48e-54 179

Find 161 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGATATTATTTATATTT+TGG 0.064549 5:+19522140 MsG0580025486.01.T01:five_prime_UTR
TTGATATACCTTTCACATTT+TGG 0.071931 5:-19526329 None:intergenic
CAGAGCTTCTTAATGGAAAT+TGG 0.139850 5:+19522815 MsG0580025486.01.T01:CDS
GCTCTTGTTGATACGGTTTA+TGG 0.164801 5:+19522688 MsG0580025486.01.T01:CDS
TCAAGCTGTTGTGTATTTAA+AGG 0.171848 5:+19526373 MsG0580025486.01.T01:three_prime_UTR
TCTTTATCCTCCAAGGTTTC+AGG 0.177149 5:+19522518 MsG0580025486.01.T01:five_prime_UTR
ATTATTTCACCAAGTTAATA+AGG 0.210201 5:-19526497 None:intergenic
GAAGAGAGAGAAGAAGGTTT+AGG 0.227490 5:-19522338 None:intergenic
AAATAATAATATATATGATT+TGG 0.238665 5:+19526513 MsG0580025486.01.T01:three_prime_UTR
GAGGCCCCAGGCTAAGATTT+TGG 0.241414 5:-19526005 None:intergenic
AAGAGAGAGAAGAAGGTTTA+GGG 0.248806 5:-19522337 None:intergenic
GAAAGTGAATCACCCAAATT+TGG 0.258440 5:-19522205 None:intergenic
AGAAATGAAATGTGTATTAA+AGG 0.289832 5:-19522235 None:intergenic
GAGGAACCAGAGCTTCTTAA+TGG 0.294675 5:+19522808 MsG0580025486.01.T01:CDS
CCAGGCTTCCATGTGGATAC+TGG 0.299360 5:+19524854 MsG0580025486.01.T01:intron
AATATATATGATTTGGGTTA+AGG 0.301373 5:+19526520 MsG0580025486.01.T01:three_prime_UTR
GAGAGAATCATTCATGCTTT+TGG 0.304543 5:+19525027 MsG0580025486.01.T01:CDS
TGAAATGACACGTGATATAT+TGG 0.313752 5:-19526064 None:intergenic
AATAATAATATATATGATTT+GGG 0.324183 5:+19526514 MsG0580025486.01.T01:three_prime_UTR
GATAAAGATGGTTTCGCTTC+GGG 0.325235 5:-19522503 None:intergenic
AATATATCACGTGTCATTTC+AGG 0.334503 5:+19526066 MsG0580025486.01.T01:CDS
ACTGAGCTTGGGTTTCGAGC+TGG 0.339922 5:+19522712 MsG0580025486.01.T01:CDS
CTGAGCTTGGGTTTCGAGCT+GGG 0.348135 5:+19522713 MsG0580025486.01.T01:CDS
CTCTTGTTGATACGGTTTAT+GGG 0.348147 5:+19522689 MsG0580025486.01.T01:CDS
TTTGGGTGGGCAGAGGGAAA+TGG 0.360329 5:-19526311 None:intergenic
TTGGGTGGGCAGAGGGAAAT+GGG 0.375489 5:-19526310 None:intergenic
CTTTCCAAATTGCTGACCTA+TGG 0.382094 5:-19524887 None:intergenic
TTATTTCACCAAGTTAATAA+GGG 0.383282 5:-19526496 None:intergenic
AGCTATAGCGATGCTGGAAA+TGG 0.384313 5:+19522598 MsG0580025486.01.T01:CDS
ATCCTCCAAGGTTTCAGGTT+CGG 0.389859 5:+19522523 MsG0580025486.01.T01:five_prime_UTR
GATGGTTTCGCTTCGGGTAC+GGG 0.390387 5:-19522497 None:intergenic
GGGAGAGAAGAGAGAGAAGA+AGG 0.393241 5:-19522344 None:intergenic
CCCTTCCTCCACCGGAGCTT+CGG 0.393255 5:-19522638 None:intergenic
CGGTTTATGGGACTGAGCTT+GGG 0.396439 5:+19522701 MsG0580025486.01.T01:CDS
AGAAGCTCTGGTTCCTCAAC+CGG 0.397078 5:-19522802 None:intergenic
ACCCCATTCATCGGAGATAT+CGG 0.397999 5:-19522462 None:intergenic
CACCGATATCTCCGATGAAT+GGG 0.399176 5:+19522460 MsG0580025486.01.T01:five_prime_UTR
ACGGTTTATGGGACTGAGCT+TGG 0.399549 5:+19522700 MsG0580025486.01.T01:CDS
TTTCGCTTCGGGTACGGGTT+CGG 0.403541 5:-19522492 None:intergenic
AGATGGTTTCGCTTCGGGTA+CGG 0.404635 5:-19522498 None:intergenic
GAGTCCCCTTCTTGATTAGT+AGG 0.407924 5:+19526215 MsG0580025486.01.T01:exon
TTCGAAGAACGAGGATGAAT+GGG 0.414775 5:+19522550 MsG0580025486.01.T01:exon
GCAACAGTCTCTCGGTCCTC+TGG 0.422110 5:+19526029 MsG0580025486.01.T01:CDS
GTCTCCGATGTCGCCGGCGG+CGG 0.422448 5:-19522423 None:intergenic
GTCGGAGTTCGTGGCTCAGC+TGG 0.423316 5:+19522756 MsG0580025486.01.T01:CDS
TTTCCAAATTGCTGACCTAT+GGG 0.427779 5:-19524886 None:intergenic
TGGGTGGGCAGAGGGAAATG+GGG 0.428409 5:-19526309 None:intergenic
GCTTGTCCTCTCACCAGGTA+TGG 0.429636 5:-19526109 None:intergenic
GGATAAAGATGGTTTCGCTT+CGG 0.433399 5:-19522504 None:intergenic
CCACCGATATCTCCGATGAA+TGG 0.434882 5:+19522459 MsG0580025486.01.T01:five_prime_UTR
CAATTTCCATTAAGAAGCTC+TGG 0.437020 5:-19522814 None:intergenic
CTTCGAAGAACGAGGATGAA+TGG 0.442545 5:+19522549 MsG0580025486.01.T01:exon
CCCTACCGCTGCTCCGGTTG+AGG 0.446206 5:+19522789 MsG0580025486.01.T01:CDS
GGGAAGAATGTAGTTACAAT+TGG 0.449834 5:+19524940 MsG0580025486.01.T01:CDS
CAGGCTTCCATGTGGATACT+GGG 0.452197 5:+19524855 MsG0580025486.01.T01:intron
TCTTCATTCCCTTCCTCCAC+CGG 0.452347 5:-19522646 None:intergenic
AGAGCTTCTTAATGGAAATT+GGG 0.453732 5:+19522816 MsG0580025486.01.T01:CDS
TCTTACCACATACCTTGATA+AGG 0.454052 5:+19526140 MsG0580025486.01.T01:CDS
ATCTCCGCCGCCGGCGACAT+CGG 0.459218 5:+19522419 MsG0580025486.01.T01:five_prime_UTR
AGCTGAGGTGTCGGAGTTCG+TGG 0.459710 5:+19522747 MsG0580025486.01.T01:CDS
AGCAGCAGGAGCATTACCTT+TGG 0.464327 5:+19523765 MsG0580025486.01.T01:CDS
GAAACGTGCTCTTGTTGATA+CGG 0.468444 5:+19522681 MsG0580025486.01.T01:CDS
GGAAAGTGTATGTCAGGAAA+AGG 0.472175 5:+19524904 MsG0580025486.01.T01:CDS
GCGGAGATGAAGCGGAGAGA+AGG 0.473892 5:-19522404 None:intergenic
AGGAACCGAACCTGAAACCT+TGG 0.476928 5:-19522528 None:intergenic
TTCTAACCCTACCGCTGCTC+CGG 0.478623 5:+19522783 MsG0580025486.01.T01:CDS
CAATTTGGAAAGTGTATGTC+AGG 0.479270 5:+19524898 MsG0580025486.01.T01:CDS
GGGCCTCTGCAACAGTCTCT+CGG 0.479400 5:+19526021 MsG0580025486.01.T01:CDS
GCCGGGAGCTATAGCGATGC+TGG 0.479717 5:+19522592 MsG0580025486.01.T01:CDS
GGCTTCTGCTACCGAAGCTC+CGG 0.480527 5:+19522627 MsG0580025486.01.T01:CDS
GTTCACAACAGTGGAGCTAT+AGG 0.482056 5:-19523821 None:intergenic
GCTTGGGTTTCGAGCTGGGT+CGG 0.485721 5:+19522717 MsG0580025486.01.T01:CDS
CTCCGCTTCATCTCCGCCGC+CGG 0.492082 5:+19522410 MsG0580025486.01.T01:five_prime_UTR
ATAAGGACTTGAGAATATCA+AGG 0.494892 5:+19526157 MsG0580025486.01.T01:CDS
GAAGGAGCGAAAATGACGCC+GGG 0.506750 5:+19522575 MsG0580025486.01.T01:CDS
TCCTCAACCGGAGCAGCGGT+AGG 0.508926 5:-19522790 None:intergenic
TTGTTTGTCCTTGCAAGAGA+AGG 0.509859 5:+19526192 MsG0580025486.01.T01:CDS
GGAGCTTCGGTAGCAGAAGC+CGG 0.511929 5:-19522625 None:intergenic
CATTCATCCTCGTTCTTCGA+AGG 0.514164 5:-19522548 None:intergenic
ATATTCTCAAGTCCTTATCA+AGG 0.517104 5:-19526152 None:intergenic
AGCATTACCTTTGGTGAAGG+TGG 0.517212 5:+19523774 MsG0580025486.01.T01:CDS
CCAGGTATGGGAATCTTAAG+AGG 0.518200 5:-19526096 None:intergenic
GAGACTGTTGCAGAGGCCCC+AGG 0.518219 5:-19526017 None:intergenic
CAAGAGCTTGTCCTCTCACC+AGG 0.518418 5:-19526114 None:intergenic
CTGTTGCCTCTTCTAGCAGC+AGG 0.518463 5:+19523751 MsG0580025486.01.T01:CDS
CGCCGGCGGCGGAGATGAAG+CGG 0.523679 5:-19522412 None:intergenic
TTTGGCCAAAATCTTAGCCT+GGG 0.525313 5:+19526000 MsG0580025486.01.T01:CDS
TACTTCCTACTAATCAAGAA+GGG 0.525799 5:-19526220 None:intergenic
CTTGTCCTCTCACCAGGTAT+GGG 0.526234 5:-19526108 None:intergenic
ACCGAAGCTCCGGTGGAGGA+AGG 0.527263 5:+19522637 MsG0580025486.01.T01:CDS
TGCTACCGAAGCTCCGGTGG+AGG 0.528076 5:+19522633 MsG0580025486.01.T01:CDS
GAAACCTTGGAGGATAAAGA+TGG 0.529624 5:-19522515 None:intergenic
CTGGTGAGAGGACAAGCTCT+TGG 0.530530 5:+19526115 MsG0580025486.01.T01:CDS
GTGGGCAGAGGGAAATGGGG+TGG 0.530810 5:-19526306 None:intergenic
GGATTTCTCACCCCATTCAT+CGG 0.532988 5:-19522471 None:intergenic
GTATGTCAGGAAAAGGAGAA+GGG 0.538462 5:+19524911 MsG0580025486.01.T01:CDS
TGAAGCGGAGAGAAGGGAAT+CGG 0.540766 5:-19522397 None:intergenic
TGTTTGTCCTTGCAAGAGAA+GGG 0.542298 5:+19526193 MsG0580025486.01.T01:CDS
TTACTTCCTACTAATCAAGA+AGG 0.544198 5:-19526221 None:intergenic
AATCAGGTTACATTCAAAGA+AGG 0.544455 5:+19525919 MsG0580025486.01.T01:intron
CGGAGATGAAGCGGAGAGAA+GGG 0.544568 5:-19522403 None:intergenic
TCCAAATTGCTGACCTATGG+GGG 0.545056 5:-19524884 None:intergenic
CCTCTTAAGATTCCCATACC+TGG 0.555697 5:+19526096 MsG0580025486.01.T01:CDS
TGTATGTCAGGAAAAGGAGA+AGG 0.556206 5:+19524910 MsG0580025486.01.T01:CDS
TCCAGCATCGCTATAGCTCC+CGG 0.556872 5:-19522593 None:intergenic
CCGAAGCTCCGGTGGAGGAA+GGG 0.557588 5:+19522638 MsG0580025486.01.T01:CDS
CAAGTCCTTATCAAGGTATG+TGG 0.561987 5:-19526145 None:intergenic
AACGAGGATGAATGGGGAGA+AGG 0.562177 5:+19522557 MsG0580025486.01.T01:exon
AACCGAACCTGAAACCTTGG+AGG 0.564163 5:-19522525 None:intergenic
TGGGTCGGAGGTTCGAGCTG+AGG 0.566095 5:+19522732 MsG0580025486.01.T01:CDS
TTCTGCTACCGAAGCTCCGG+TGG 0.570205 5:+19522630 MsG0580025486.01.T01:CDS
GAAACCATCTTTATCCTCCA+AGG 0.571449 5:+19522511 MsG0580025486.01.T01:five_prime_UTR
AGAGAAGAGACATGGCGAAA+CGG 0.572628 5:-19522277 None:intergenic
GATGAGAGGAACACGTAGTG+TGG 0.575131 5:-19522303 None:intergenic
GTTACAATTGGTGAGGTGGT+AGG 0.575363 5:+19524952 MsG0580025486.01.T01:CDS
AGGAGCATTACCTTTGGTGA+AGG 0.578672 5:+19523771 MsG0580025486.01.T01:CDS
TCTCGGTCCTCTGGAGAATG+TGG 0.579374 5:+19526038 MsG0580025486.01.T01:CDS
CGATGCTGGAAATGGAACTC+CGG 0.580650 5:+19522606 MsG0580025486.01.T01:CDS
AGGTGGTAGGAATATTCTCT+AGG 0.581318 5:+19524965 MsG0580025486.01.T01:CDS
TGGTTCCTCAACCGGAGCAG+CGG 0.582763 5:-19522794 None:intergenic
AGAAGGAGCGAAAATGACGC+CGG 0.583007 5:+19522574 MsG0580025486.01.T01:CDS
GGAGGTTCGAGCTGAGGTGT+CGG 0.585365 5:+19522738 MsG0580025486.01.T01:CDS
GGGGACTCCCTTCTCTTGCA+AGG 0.586669 5:-19526200 None:intergenic
CCTCAACCGGAGCAGCGGTA+GGG 0.586793 5:-19522789 None:intergenic
TTGAGAATATCAAGGGGAGA+TGG 0.587068 5:+19526165 MsG0580025486.01.T01:CDS
TATTTCACCAAGTTAATAAG+GGG 0.587871 5:-19526495 None:intergenic
AATGTGTATTAAAGGAATTG+TGG 0.588026 5:-19522227 None:intergenic
TATGTCAGGAAAAGGAGAAG+GGG 0.588426 5:+19524912 MsG0580025486.01.T01:CDS
TGTAGTTACAATTGGTGAGG+TGG 0.588769 5:+19524948 MsG0580025486.01.T01:CDS
CTGCCCACCCAAAATGTGAA+AGG 0.591170 5:+19526321 MsG0580025486.01.T01:three_prime_UTR
ATCAGCGTCTCCGATGTCGC+CGG 0.594805 5:-19522429 None:intergenic
TAAGGACTTGAGAATATCAA+GGG 0.594956 5:+19526158 MsG0580025486.01.T01:CDS
AAGGGAATCGGTGAGGAGCG+AGG 0.594995 5:-19522385 None:intergenic
TGGGTTTCGAGCTGGGTCGG+AGG 0.599924 5:+19522720 MsG0580025486.01.T01:CDS
GGACCGAGAGACTGTTGCAG+AGG 0.604038 5:-19526024 None:intergenic
GGCAACAGTTCAGAAGATGC+TGG 0.607823 5:-19523736 None:intergenic
TTGGCCAAAATCTTAGCCTG+GGG 0.612553 5:+19526001 MsG0580025486.01.T01:CDS
GAATGTAGTTACAATTGGTG+AGG 0.617594 5:+19524945 MsG0580025486.01.T01:CDS
AATGCTCCTGCTGCTAGAAG+AGG 0.620670 5:-19523757 None:intergenic
AGCGTCTCCGATGTCGCCGG+CGG 0.622611 5:-19522426 None:intergenic
TTCCAAATTGCTGACCTATG+GGG 0.623263 5:-19524885 None:intergenic
TTCGGTTCCTTCGAAGAACG+AGG 0.624221 5:+19522541 MsG0580025486.01.T01:five_prime_UTR
ATTTCACCAAGTTAATAAGG+GGG 0.635957 5:-19526494 None:intergenic
TCATCGGAGATATCGGTGGA+TGG 0.639488 5:-19522455 None:intergenic
ACTTCCTACTAATCAAGAAG+GGG 0.640290 5:-19526219 None:intergenic
AGAATATCAAGGGGAGATGG+CGG 0.646369 5:+19526168 MsG0580025486.01.T01:CDS
AGATTCCCATACCTGGTGAG+AGG 0.651644 5:+19526103 MsG0580025486.01.T01:CDS
CCATTCATCGGAGATATCGG+TGG 0.655548 5:-19522459 None:intergenic
TGTGGAAGAGAGAAGAGACA+TGG 0.661649 5:-19522285 None:intergenic
TCGAAGAACGAGGATGAATG+GGG 0.664578 5:+19522551 MsG0580025486.01.T01:exon
GTCAACACCCAGTATCCACA+TGG 0.665282 5:-19524862 None:intergenic
CGGAGAGAAGGGAATCGGTG+AGG 0.666487 5:-19522392 None:intergenic
ACCGATATCTCCGATGAATG+GGG 0.667674 5:+19522461 MsG0580025486.01.T01:five_prime_UTR
GCCTGATCCAGGCTTCCATG+TGG 0.668547 5:+19524847 MsG0580025486.01.T01:intron
AAGGGAATGAAGAACTTGAG+CGG 0.679326 5:+19522656 MsG0580025486.01.T01:CDS
TGGTAGGAATATTCTCTAGG+TGG 0.679415 5:+19524968 MsG0580025486.01.T01:CDS
AGTACAGGTTTACAACACAT+AGG 0.682411 5:-19526442 None:intergenic
AAGGACTTGAGAATATCAAG+GGG 0.684464 5:+19526159 MsG0580025486.01.T01:CDS
ATGTCAGGAAAAGGAGAAGG+GGG 0.685732 5:+19524913 MsG0580025486.01.T01:CDS
ATGTCACGAGTTCACAACAG+TGG 0.694064 5:-19523830 None:intergenic
TTGGCAACCACATTCTCCAG+AGG 0.717434 5:-19526045 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAACTATTTATATTGTAAA+AGG + Chr5:19523367-19523386 MsG0580025486.01.T01:intron 10.0%
!!! AATTATTTTTTAGATATGAT+AGG - Chr5:19524315-19524334 None:intergenic 10.0%
!!! TTGGATATTATTTATATTTT+GGG + Chr5:19522141-19522160 MsG0580025486.01.T01:five_prime_UTR 10.0%
!!! TTTGGATATTATTTATATTT+TGG + Chr5:19522140-19522159 MsG0580025486.01.T01:five_prime_UTR 10.0%
!!! TTTTACAAATTTTAATCATA+GGG + Chr5:19523000-19523019 MsG0580025486.01.T01:CDS 10.0%
!! AACAAAACTGTAATATTATT+TGG + Chr5:19524533-19524552 MsG0580025486.01.T01:intron 15.0%
!! TTTCATTACTAATTGAAAAA+AGG + Chr5:19523949-19523968 MsG0580025486.01.T01:intron 15.0%
!!! ATTTTTAATTTCTCCAAATT+TGG + Chr5:19522192-19522211 MsG0580025486.01.T01:five_prime_UTR 15.0%
!!! CTTTTACAAATTTTAATCAT+AGG + Chr5:19522999-19523018 MsG0580025486.01.T01:CDS 15.0%
!!! TAAATTAAGTTGATTTTTCA+CGG - Chr5:19525472-19525491 None:intergenic 15.0%
!!! TATCTTTTCTTTTTTACATT+CGG + Chr5:19526283-19526302 MsG0580025486.01.T01:three_prime_UTR 15.0%
!!! TTTTTAATTTCTCCAAATTT+GGG + Chr5:19522193-19522212 MsG0580025486.01.T01:five_prime_UTR 15.0%
!! AACTGTAATATTATTTGGAA+AGG + Chr5:19524538-19524557 MsG0580025486.01.T01:intron 20.0%
!! ACTGTAATATTATTTGGAAA+GGG + Chr5:19524539-19524558 MsG0580025486.01.T01:intron 20.0%
!! AGAAATGAAATGTGTATTAA+AGG - Chr5:19522238-19522257 None:intergenic 20.0%
!! ATTATTTCACCAAGTTAATA+AGG - Chr5:19526500-19526519 None:intergenic 20.0%
!! TTATTTCACCAAGTTAATAA+GGG - Chr5:19526499-19526518 None:intergenic 20.0%
!!! AAAAAAAGAAAAAAGCACAT+AGG - Chr5:19526407-19526426 None:intergenic 20.0%
!!! AATATATATGATTTGGGTTA+AGG + Chr5:19526520-19526539 MsG0580025486.01.T01:three_prime_UTR 20.0%
!!! AATGATTAACTTGTAACAAA+GGG - Chr5:19525827-19525846 None:intergenic 20.0%
!!! CATTTTATATATAACAGTAC+AGG - Chr5:19526460-19526479 None:intergenic 20.0%
!!! GAAAGTATCTTTTTTATGTT+GGG + Chr5:19523262-19523281 MsG0580025486.01.T01:intron 20.0%
!!! TAATGATTAACTTGTAACAA+AGG - Chr5:19525828-19525847 None:intergenic 20.0%
!!! TGAAAGTATCTTTTTTATGT+TGG + Chr5:19523261-19523280 MsG0580025486.01.T01:intron 20.0%
!!! TGCTTTTTTCTTTTTTTGAA+CGG + Chr5:19526410-19526429 MsG0580025486.01.T01:three_prime_UTR 20.0%
!!! TGGAATAGAGATTTTATTAA+CGG - Chr5:19525156-19525175 None:intergenic 20.0%
!!! TTCTCCTTTTTATTTCTTTT+GGG - Chr5:19525428-19525447 None:intergenic 20.0%
!!! TTTTGTTATCTTGATTTATG+TGG - Chr5:19524520-19524539 None:intergenic 20.0%
! AAAAATATCAAAGAAACTCG+TGG - Chr5:19522178-19522197 None:intergenic 25.0%
! AACATTCTGTTATAAAAGTG+AGG - Chr5:19524724-19524743 None:intergenic 25.0%
! AATAAGATGTTAACACAAAC+AGG - Chr5:19523306-19523325 None:intergenic 25.0%
! AATGTGTATTAAAGGAATTG+TGG - Chr5:19522230-19522249 None:intergenic 25.0%
! ACATTCTGTTATAAAAGTGA+GGG - Chr5:19524723-19524742 None:intergenic 25.0%
! ACTAATTGAAAAAAGGCAAA+AGG + Chr5:19523956-19523975 MsG0580025486.01.T01:intron 25.0%
! ATAAGATGTTAACACAAACA+GGG - Chr5:19523305-19523324 None:intergenic 25.0%
! ATACTAAGAAAACCATTTGT+CGG - Chr5:19525558-19525577 None:intergenic 25.0%
! CAAAAGAAATAAAAAGGAGA+AGG + Chr5:19525427-19525446 MsG0580025486.01.T01:intron 25.0%
! CTTAACAGCTTATTAACAAT+TGG - Chr5:19525249-19525268 None:intergenic 25.0%
! CTTAGTATTAAGCAATAAGA+TGG + Chr5:19525570-19525589 MsG0580025486.01.T01:intron 25.0%
! GATACTTATCTAATGAGAAA+AGG - Chr5:19524076-19524095 None:intergenic 25.0%
! TAACACTTCTAAATGAAATC+AGG + Chr5:19525903-19525922 MsG0580025486.01.T01:intron 25.0%
! TACACCCAAAAGAAATAAAA+AGG + Chr5:19525421-19525440 MsG0580025486.01.T01:intron 25.0%
! TAGTAAGTTACTGTGAAATA+TGG + Chr5:19524149-19524168 MsG0580025486.01.T01:intron 25.0%
! TATTTCACCAAGTTAATAAG+GGG - Chr5:19526498-19526517 None:intergenic 25.0%
! TGTCTGAGTAGTTATTTAAA+TGG - Chr5:19524360-19524379 None:intergenic 25.0%
!! AAATAAAAAGGAGAAGGTAT+AGG + Chr5:19525433-19525452 MsG0580025486.01.T01:intron 25.0%
!! ATGTTTTCAATGCAAAGTAA+AGG - Chr5:19523589-19523608 None:intergenic 25.0%
!! ATTTTGTATCTTAGAAACGA+AGG + Chr5:19523614-19523633 MsG0580025486.01.T01:intron 25.0%
!! CAACTTATTGACAATGTTTT+AGG + Chr5:19523473-19523492 MsG0580025486.01.T01:intron 25.0%
!! CCAAAAATGTTTATGTTTTC+TGG - Chr5:19525985-19526004 None:intergenic 25.0%
!! CCAGAAAACATAAACATTTT+TGG + Chr5:19525982-19526001 MsG0580025486.01.T01:CDS 25.0%
!! TCAATTTTAGACTTTATCTC+TGG - Chr5:19525958-19525977 None:intergenic 25.0%
!! TGATATACCTTTCACATTTT+GGG - Chr5:19526331-19526350 None:intergenic 25.0%
!! TTGATATACCTTTCACATTT+TGG - Chr5:19526332-19526351 None:intergenic 25.0%
!!! AAATGTTTATGTTTTCTGGT+AGG - Chr5:19525981-19526000 None:intergenic 25.0%
!!! CTTCTCCTTTTTATTTCTTT+TGG - Chr5:19525429-19525448 None:intergenic 25.0%
AAAAAAACCCTAGATGAGAT+GGG + Chr5:19524262-19524281 MsG0580025486.01.T01:intron 30.0%
AAAAACAATACTGTGAACTC+AGG - Chr5:19525651-19525670 None:intergenic 30.0%
AATAGCTCTTACAGAAGAAA+AGG - Chr5:19525122-19525141 None:intergenic 30.0%
AATCAGGTTACATTCAAAGA+AGG + Chr5:19525919-19525938 MsG0580025486.01.T01:intron 30.0%
ACGGTTGAAACTGAAAAATT+TGG - Chr5:19522261-19522280 None:intergenic 30.0%
ACTGAGAATTCAAGTATCAA+TGG - Chr5:19525176-19525195 None:intergenic 30.0%
ACTTATTTGAGCTTATCTAC+TGG - Chr5:19523543-19523562 None:intergenic 30.0%
ACTTTGCATTGAAAACATAG+AGG + Chr5:19523591-19523610 MsG0580025486.01.T01:intron 30.0%
AGAAGAAAAGGAAATAACCA+AGG - Chr5:19525110-19525129 None:intergenic 30.0%
AGAGCTTCTTAATGGAAATT+GGG + Chr5:19522816-19522835 MsG0580025486.01.T01:CDS 30.0%
AGTTTGATTGACATCATAGT+TGG + Chr5:19523030-19523049 MsG0580025486.01.T01:intron 30.0%
ATAAGGACTTGAGAATATCA+AGG + Chr5:19526157-19526176 MsG0580025486.01.T01:CDS 30.0%
ATATTCTCAAGTCCTTATCA+AGG - Chr5:19526155-19526174 None:intergenic 30.0%
ATTTCACCAAGTTAATAAGG+GGG - Chr5:19526497-19526516 None:intergenic 30.0%
CAATTAGTAATGAAATGCGA+AGG - Chr5:19523944-19523963 None:intergenic 30.0%
CAATTTACAAAAGCCTTAGT+TGG + Chr5:19524427-19524446 MsG0580025486.01.T01:intron 30.0%
GAAGAAAAGGAAATAACCAA+GGG - Chr5:19525109-19525128 None:intergenic 30.0%
GTTTGATTGACATCATAGTT+GGG + Chr5:19523031-19523050 MsG0580025486.01.T01:intron 30.0%
TAAAAAAACCCTAGATGAGA+TGG + Chr5:19524261-19524280 MsG0580025486.01.T01:intron 30.0%
TAAGGACTTGAGAATATCAA+GGG + Chr5:19526158-19526177 MsG0580025486.01.T01:CDS 30.0%
TACTAAGAAAACCATTTGTC+GGG - Chr5:19525557-19525576 None:intergenic 30.0%
TACTTCCTACTAATCAAGAA+GGG - Chr5:19526223-19526242 None:intergenic 30.0%
TCAAGCTGTTGTGTATTTAA+AGG + Chr5:19526373-19526392 MsG0580025486.01.T01:three_prime_UTR 30.0%
TGAAATGACACGTGATATAT+TGG - Chr5:19526067-19526086 None:intergenic 30.0%
TGAGAAATATTGTCAGAAGT+TGG - Chr5:19524681-19524700 None:intergenic 30.0%
TTACTTCCTACTAATCAAGA+AGG - Chr5:19526224-19526243 None:intergenic 30.0%
TTAGGAAAATTATCTCTGGT+AGG + Chr5:19525061-19525080 MsG0580025486.01.T01:intron 30.0%
TTATCTAATGAGAAAAGGCT+TGG - Chr5:19524071-19524090 None:intergenic 30.0%
TTGGTTAGGAAAATTATCTC+TGG + Chr5:19525057-19525076 MsG0580025486.01.T01:intron 30.0%
! ATACGTTTTATGAGACTGTT+TGG - Chr5:19523519-19523538 None:intergenic 30.0%
! ATGATTGTCAAACTGATTTC+AGG + Chr5:19523711-19523730 MsG0580025486.01.T01:intron 30.0%
! ATTTTAGACTTTATCTCTGG+AGG - Chr5:19525955-19525974 None:intergenic 30.0%
! TACGTTTTATGAGACTGTTT+GGG - Chr5:19523518-19523537 None:intergenic 30.0%
!! AAAAAGTTCTAAGCAAACTG+AGG - Chr5:19525855-19525874 None:intergenic 30.0%
!! AATATATCACGTGTCATTTC+AGG + Chr5:19526066-19526085 MsG0580025486.01.T01:CDS 30.0%
AAAAAAAGAGCAAACCTCGT+AGG + Chr5:19524005-19524024 MsG0580025486.01.T01:intron 35.0%
AACTAAGGTAGTATGTCAGT+AGG - Chr5:19525372-19525391 None:intergenic 35.0%
AAGAACAAATACAACGTGAC+TGG - Chr5:19525717-19525736 None:intergenic 35.0%
AAGAGAGAGAAGAAGGTTTA+GGG - Chr5:19522340-19522359 None:intergenic 35.0%
AAGGACTTGAGAATATCAAG+GGG + Chr5:19526159-19526178 MsG0580025486.01.T01:CDS 35.0%
ACAAACAGAAGAGCTTATGA+AGG - Chr5:19525524-19525543 None:intergenic 35.0%
ACGTCACACTGATAATAAGT+TGG + Chr5:19523110-19523129 MsG0580025486.01.T01:intron 35.0%
ACTAAGGTAGTATGTCAGTA+GGG - Chr5:19525371-19525390 None:intergenic 35.0%
ACTTCCTACTAATCAAGAAG+GGG - Chr5:19526222-19526241 None:intergenic 35.0%
AGAATACCTGTATTCTTGCA+GGG - Chr5:19523913-19523932 None:intergenic 35.0%
AGTACAGGTTTACAACACAT+AGG - Chr5:19526445-19526464 None:intergenic 35.0%
ATTGATGTTGTGTGTGATTG+CGG + Chr5:19524186-19524205 MsG0580025486.01.T01:intron 35.0%
CAAAATAAGCCAATCCAAAC+AGG + Chr5:19523563-19523582 MsG0580025486.01.T01:intron 35.0%
CAACACATACATATTGCTCA+AGG + Chr5:19525289-19525308 MsG0580025486.01.T01:intron 35.0%
CAATCACACACAACATCAAT+TGG - Chr5:19524186-19524205 None:intergenic 35.0%
CAATTTCCATTAAGAAGCTC+TGG - Chr5:19522817-19522836 None:intergenic 35.0%
CACAATATCAAGGATTGTGA+CGG - Chr5:19524113-19524132 None:intergenic 35.0%
CAGAGCTTCTTAATGGAAAT+TGG + Chr5:19522815-19522834 MsG0580025486.01.T01:CDS 35.0%
CTATCACCTAGCAAGTTAAA+CGG + Chr5:19525198-19525217 MsG0580025486.01.T01:intron 35.0%
CTCTTGTTGATACGGTTTAT+GGG + Chr5:19522689-19522708 MsG0580025486.01.T01:CDS 35.0%
CTGTTATAAAAGTGAGGGAA+AGG - Chr5:19524718-19524737 None:intergenic 35.0%
GAAAGTGAATCACCCAAATT+TGG - Chr5:19522208-19522227 None:intergenic 35.0%
GAATGTAGTTACAATTGGTG+AGG + Chr5:19524945-19524964 MsG0580025486.01.T01:CDS 35.0%
GGGAAGAATGTAGTTACAAT+TGG + Chr5:19524940-19524959 MsG0580025486.01.T01:CDS 35.0%
TATACTATGAAGCACAAGCA+CGG + Chr5:19523068-19523087 MsG0580025486.01.T01:intron 35.0%
TCTTACCACATACCTTGATA+AGG + Chr5:19526140-19526159 MsG0580025486.01.T01:CDS 35.0%
TGAGAGTCTTAATCACTCTT+GGG - Chr5:19524458-19524477 None:intergenic 35.0%
TTGAGAGTCTTAATCACTCT+TGG - Chr5:19524459-19524478 None:intergenic 35.0%
TTTCCAAATTGCTGACCTAT+GGG - Chr5:19524889-19524908 None:intergenic 35.0%
! AGTTAAACGGTTGAGTTTTG+TGG + Chr5:19525211-19525230 MsG0580025486.01.T01:intron 35.0%
! ATCACTAAGTCTGAAGCTAA+AGG - Chr5:19524493-19524512 None:intergenic 35.0%
! ATTGTCAGAAGTTGGTTAGT+AGG - Chr5:19524673-19524692 None:intergenic 35.0%
! ATTTGAGTTAGTTACATCCG+TGG - Chr5:19523649-19523668 None:intergenic 35.0%
! ATTTTATCCACCTTCACCAA+AGG - Chr5:19523784-19523803 None:intergenic 35.0%
! CAATTTGGAAAGTGTATGTC+AGG + Chr5:19524898-19524917 MsG0580025486.01.T01:CDS 35.0%
! GAGAGAATCATTCATGCTTT+TGG + Chr5:19525027-19525046 MsG0580025486.01.T01:CDS 35.0%
! TATACCTTTCACATTTTGGG+TGG - Chr5:19526328-19526347 None:intergenic 35.0%
! TCACTAAGTCTGAAGCTAAA+GGG - Chr5:19524492-19524511 None:intergenic 35.0%
!! ATACCTTTCACATTTTGGGT+GGG - Chr5:19526327-19526346 None:intergenic 35.0%
!! GTTAAACGGTTGAGTTTTGT+GGG + Chr5:19525212-19525231 MsG0580025486.01.T01:intron 35.0%
!! GTTGGGAGTATTTAGAACTT+AGG + Chr5:19523279-19523298 MsG0580025486.01.T01:intron 35.0%
!! TCATGCTTTTGGTGATTTGT+TGG + Chr5:19525038-19525057 MsG0580025486.01.T01:CDS 35.0%
!!! AACGAAGGTATTTTTTGCCA+CGG + Chr5:19523629-19523648 MsG0580025486.01.T01:intron 35.0%
!!! CTTTTGGTGATTTGTTGGTT+AGG + Chr5:19525043-19525062 MsG0580025486.01.T01:intron 35.0%
AAACACAGAGTCCTATCACA+TGG + Chr5:19524789-19524808 MsG0580025486.01.T01:intron 40.0%
AAGGCACAACTAAGGAACTA+AGG - Chr5:19525387-19525406 None:intergenic 40.0%
AAGGGAATGAAGAACTTGAG+CGG + Chr5:19522656-19522675 MsG0580025486.01.T01:CDS 40.0%
AAGTAAAGGCCTGTTTGGAT+TGG - Chr5:19523575-19523594 None:intergenic 40.0%
ACTGAAAGATGATGAGGCAA+AGG - Chr5:19523864-19523883 None:intergenic 40.0%
AGATGCACTGAAAGATGATG+AGG - Chr5:19523870-19523889 None:intergenic 40.0%
AGGTGGTAGGAATATTCTCT+AGG + Chr5:19524965-19524984 MsG0580025486.01.T01:CDS 40.0%
AGTTCCTTAGTTGTGCCTTT+GGG + Chr5:19525388-19525407 MsG0580025486.01.T01:intron 40.0%
ATATCCCCACTAACTCTTAC+TGG + Chr5:19524759-19524778 MsG0580025486.01.T01:intron 40.0%
ATATTTGCATGACAGAGCAG+CGG - Chr5:19525757-19525776 None:intergenic 40.0%
ATGCAAAGTAAAGGCCTGTT+TGG - Chr5:19523580-19523599 None:intergenic 40.0%
ATGTGATAGGACTCTGTGTT+TGG - Chr5:19524790-19524809 None:intergenic 40.0%
CAAGTCCTTATCAAGGTATG+TGG - Chr5:19526148-19526167 None:intergenic 40.0%
CGTATAACCCATCTCATCTA+GGG - Chr5:19524272-19524291 None:intergenic 40.0%
CGTCACAATCCTTGATATTG+TGG + Chr5:19524111-19524130 MsG0580025486.01.T01:intron 40.0%
CTAGTCCAGTAAGAGTTAGT+GGG - Chr5:19524767-19524786 None:intergenic 40.0%
CTGAAAGATGATGAGGCAAA+GGG - Chr5:19523863-19523882 None:intergenic 40.0%
CTTTCCAAATTGCTGACCTA+TGG - Chr5:19524890-19524909 None:intergenic 40.0%
GAAACCATCTTTATCCTCCA+AGG + Chr5:19522511-19522530 MsG0580025486.01.T01:five_prime_UTR 40.0%
GAAACCTTGGAGGATAAAGA+TGG - Chr5:19522518-19522537 None:intergenic 40.0%
GAAACGTGCTCTTGTTGATA+CGG + Chr5:19522681-19522700 MsG0580025486.01.T01:CDS 40.0%
GAAGAGAGAGAAGAAGGTTT+AGG - Chr5:19522341-19522360 None:intergenic 40.0%
GAGAATACCTGTATTCTTGC+AGG - Chr5:19523914-19523933 None:intergenic 40.0%
GATAAAGATGGTTTCGCTTC+GGG - Chr5:19522506-19522525 None:intergenic 40.0%
GCTCTTGTTGATACGGTTTA+TGG + Chr5:19522688-19522707 MsG0580025486.01.T01:CDS 40.0%
GGATAAAGATGGTTTCGCTT+CGG - Chr5:19522507-19522526 None:intergenic 40.0%
GTATGTCAGGAAAAGGAGAA+GGG + Chr5:19524911-19524930 MsG0580025486.01.T01:CDS 40.0%
TAGTCCAGTAAGAGTTAGTG+GGG - Chr5:19524766-19524785 None:intergenic 40.0%
TAGTTCCTTAGTTGTGCCTT+TGG + Chr5:19525387-19525406 MsG0580025486.01.T01:intron 40.0%
TATGTCAGGAAAAGGAGAAG+GGG + Chr5:19524912-19524931 MsG0580025486.01.T01:CDS 40.0%
TCGTATAACCCATCTCATCT+AGG - Chr5:19524273-19524292 None:intergenic 40.0%
TCTTTATCCTCCAAGGTTTC+AGG + Chr5:19522518-19522537 MsG0580025486.01.T01:five_prime_UTR 40.0%
TGCAACTCTCCACAATATCA+AGG - Chr5:19524123-19524142 None:intergenic 40.0%
TGGTAGGAATATTCTCTAGG+TGG + Chr5:19524968-19524987 MsG0580025486.01.T01:CDS 40.0%
TGTAGTTACAATTGGTGAGG+TGG + Chr5:19524948-19524967 MsG0580025486.01.T01:CDS 40.0%
TGTATGTCAGGAAAAGGAGA+AGG + Chr5:19524910-19524929 MsG0580025486.01.T01:CDS 40.0%
TGTTCACCCCCTTATTAACT+TGG + Chr5:19526488-19526507 MsG0580025486.01.T01:three_prime_UTR 40.0%
TGTTTGTCCTTGCAAGAGAA+GGG + Chr5:19526193-19526212 MsG0580025486.01.T01:CDS 40.0%
TTCCAAATTGCTGACCTATG+GGG - Chr5:19524888-19524907 None:intergenic 40.0%
TTCGAAGAACGAGGATGAAT+GGG + Chr5:19522550-19522569 MsG0580025486.01.T01:exon 40.0%
TTGAGAATATCAAGGGGAGA+TGG + Chr5:19526165-19526184 MsG0580025486.01.T01:CDS 40.0%
TTGTTTGTCCTTGCAAGAGA+AGG + Chr5:19526192-19526211 MsG0580025486.01.T01:CDS 40.0%
TTTGGCCAAAATCTTAGCCT+GGG + Chr5:19526000-19526019 MsG0580025486.01.T01:CDS 40.0%
! AGCTGTTTCACAAGCTATCT+TGG + Chr5:19523425-19523444 MsG0580025486.01.T01:intron 40.0%
! CATATTGCTCAAGGTACTAC+TGG + Chr5:19525298-19525317 MsG0580025486.01.T01:intron 40.0%
! CTGGTTTGCATCTTTCTGAA+AGG + Chr5:19525317-19525336 MsG0580025486.01.T01:intron 40.0%
! GGAAAGTGTATGTCAGGAAA+AGG + Chr5:19524904-19524923 MsG0580025486.01.T01:CDS 40.0%
! TATTTTGCCTTTCACCTACG+AGG - Chr5:19524022-19524041 None:intergenic 40.0%
! TTCTAGCTGTCATGTGAAAG+AGG + Chr5:19523979-19523998 MsG0580025486.01.T01:intron 40.0%
! TTTTGGCCAAAATCTTAGCC+TGG + Chr5:19525999-19526018 MsG0580025486.01.T01:CDS 40.0%
!! ACTCAACCGTTTAACTTGCT+AGG - Chr5:19525207-19525226 None:intergenic 40.0%
ACCCCATTCATCGGAGATAT+CGG - Chr5:19522465-19522484 None:intergenic 45.0%
ACCGATATCTCCGATGAATG+GGG + Chr5:19522461-19522480 MsG0580025486.01.T01:five_prime_UTR 45.0%
AGAATATCAAGGGGAGATGG+CGG + Chr5:19526168-19526187 MsG0580025486.01.T01:CDS 45.0%
AGAGAAGAGACATGGCGAAA+CGG - Chr5:19522280-19522299 None:intergenic 45.0%
AGAGTCTGACACGACACATT+TGG - Chr5:19523172-19523191 None:intergenic 45.0%
AGCACAATGCTTCTAACCAG+AGG + Chr5:19524643-19524662 MsG0580025486.01.T01:intron 45.0%
AGCATTACCTTTGGTGAAGG+TGG + Chr5:19523774-19523793 MsG0580025486.01.T01:CDS 45.0%
AGCTATAGCGATGCTGGAAA+TGG + Chr5:19522598-19522617 MsG0580025486.01.T01:CDS 45.0%
AGGGCTTCGAACTTCAAATG+AGG - Chr5:19523894-19523913 None:intergenic 45.0%
AGTGTTCACACTTCACACTC+TGG - Chr5:19524616-19524635 None:intergenic 45.0%
ATGAAGCACAAGCACGGATA+CGG + Chr5:19523074-19523093 MsG0580025486.01.T01:intron 45.0%
ATGTCACGAGTTCACAACAG+TGG - Chr5:19523833-19523852 None:intergenic 45.0%
ATGTCAGGAAAAGGAGAAGG+GGG + Chr5:19524913-19524932 MsG0580025486.01.T01:CDS 45.0%
CACCGATATCTCCGATGAAT+GGG + Chr5:19522460-19522479 MsG0580025486.01.T01:five_prime_UTR 45.0%
CATTCATCCTCGTTCTTCGA+AGG - Chr5:19522551-19522570 None:intergenic 45.0%
CTTCGAAGAACGAGGATGAA+TGG + Chr5:19522549-19522568 MsG0580025486.01.T01:exon 45.0%
GAGGAACCAGAGCTTCTTAA+TGG + Chr5:19522808-19522827 MsG0580025486.01.T01:CDS 45.0%
GAGTCCCCTTCTTGATTAGT+AGG + Chr5:19526215-19526234 MsG0580025486.01.T01:exon 45.0%
GCACAAAGGCTCTACAATGA+TGG + Chr5:19524566-19524585 MsG0580025486.01.T01:intron 45.0%
GCACAATGCTTCTAACCAGA+GGG + Chr5:19524644-19524663 MsG0580025486.01.T01:intron 45.0%
GCTAGTCCAGTAAGAGTTAG+TGG - Chr5:19524768-19524787 None:intergenic 45.0%
GGATTTCTCACCCCATTCAT+CGG - Chr5:19522474-19522493 None:intergenic 45.0%
GGGAAAATATCCAGAGCCTA+TGG - Chr5:19525089-19525108 None:intergenic 45.0%
GTGTAGTCAAAGATGCCCAA+AGG - Chr5:19525406-19525425 None:intergenic 45.0%
GTTACAATTGGTGAGGTGGT+AGG + Chr5:19524952-19524971 MsG0580025486.01.T01:CDS 45.0%
GTTCACAACAGTGGAGCTAT+AGG - Chr5:19523824-19523843 None:intergenic 45.0%
TATCACATGGCTGCTTGTGA+CGG + Chr5:19524802-19524821 MsG0580025486.01.T01:intron 45.0%
TATTTGCATGACAGAGCAGC+GGG - Chr5:19525756-19525775 None:intergenic 45.0%
TCCAAATTGCTGACCTATGG+GGG - Chr5:19524887-19524906 None:intergenic 45.0%
TCGAAGAACGAGGATGAATG+GGG + Chr5:19522551-19522570 MsG0580025486.01.T01:exon 45.0%
TGTCGTGAAAACCCGACAAA+TGG + Chr5:19525543-19525562 MsG0580025486.01.T01:intron 45.0%
TGTGGAAGAGAGAAGAGACA+TGG - Chr5:19522288-19522307 None:intergenic 45.0%
TTATCTCTGGTAGGAGCCAT+AGG + Chr5:19525070-19525089 MsG0580025486.01.T01:intron 45.0%
TTGGAAAGGGTTGAGCACAA+AGG + Chr5:19524552-19524571 MsG0580025486.01.T01:intron 45.0%
TTGGCCAAAATCTTAGCCTG+GGG + Chr5:19526001-19526020 MsG0580025486.01.T01:CDS 45.0%
TTGGTTAGTAGGTTTCCCTC+TGG - Chr5:19524662-19524681 None:intergenic 45.0%
! TGTTGTTGTTCAGACGAGAC+AGG - Chr5:19525274-19525293 None:intergenic 45.0%
!! AGGAGCATTACCTTTGGTGA+AGG + Chr5:19523771-19523790 MsG0580025486.01.T01:CDS 45.0%
!! AGGGAGTATTGATAGGACTG+TGG + Chr5:19524825-19524844 MsG0580025486.01.T01:intron 45.0%
!! ATCCTCCAAGGTTTCAGGTT+CGG + Chr5:19522523-19522542 MsG0580025486.01.T01:five_prime_UTR 45.0%
!! TGGTTAGAAGCATTGTGCTC+TGG - Chr5:19524642-19524661 None:intergenic 45.0%
!!! AGGCTCTGGATATTTTCCCT+TGG + Chr5:19525090-19525109 MsG0580025486.01.T01:intron 45.0%
!!! GGGTTTTGAGAGAAGATGAG+AGG - Chr5:19522320-19522339 None:intergenic 45.0%
!! AAATAATAATATATATGATT+TGG + Chr5:19526513-19526532 MsG0580025486.01.T01:three_prime_UTR 5.0%
!! AATAATAATATATATGATTT+GGG + Chr5:19526514-19526533 MsG0580025486.01.T01:three_prime_UTR 5.0%
!! TTTATTAAAAAAATGATATT+TGG + Chr5:19522122-19522141 MsG0580025486.01.T01:five_prime_UTR 5.0%
AACCGAACCTGAAACCTTGG+AGG - Chr5:19522528-19522547 None:intergenic 50.0%
AACGAGGATGAATGGGGAGA+AGG + Chr5:19522557-19522576 MsG0580025486.01.T01:exon 50.0%
AATGCTCCTGCTGCTAGAAG+AGG - Chr5:19523760-19523779 None:intergenic 50.0%
ACCCCCATAGGTCAGCAATT+TGG + Chr5:19524883-19524902 MsG0580025486.01.T01:CDS 50.0%
ACGGTTTATGGGACTGAGCT+TGG + Chr5:19522700-19522719 MsG0580025486.01.T01:CDS 50.0%
ACTCCACATTGAAGGCTGGT+GGG - Chr5:19523212-19523231 None:intergenic 50.0%
AGAAGGAGCGAAAATGACGC+CGG + Chr5:19522574-19522593 MsG0580025486.01.T01:CDS 50.0%
AGATGGTTTCGCTTCGGGTA+CGG - Chr5:19522501-19522520 None:intergenic 50.0%
AGGAACCGAACCTGAAACCT+TGG - Chr5:19522531-19522550 None:intergenic 50.0%
AGGAGAGAGAGAGATTCGAG+AGG - Chr5:19522368-19522387 None:intergenic 50.0%
CAAGTGAAGCCACGACATCA+TGG - Chr5:19524224-19524243 None:intergenic 50.0%
CACAAAGAGCCATGATGTCG+TGG + Chr5:19524212-19524231 MsG0580025486.01.T01:intron 50.0%
CAGGCTTCCATGTGGATACT+GGG + Chr5:19524855-19524874 MsG0580025486.01.T01:intron 50.0%
CCACCGATATCTCCGATGAA+TGG + Chr5:19522459-19522478 MsG0580025486.01.T01:five_prime_UTR 50.0%
CCATTCATCGGAGATATCGG+TGG - Chr5:19522462-19522481 None:intergenic 50.0%
CGATGCTGGAAATGGAACTC+CGG + Chr5:19522606-19522625 MsG0580025486.01.T01:CDS 50.0%
CGGTTTATGGGACTGAGCTT+GGG + Chr5:19522701-19522720 MsG0580025486.01.T01:CDS 50.0%
CTCTTGGGAGCAACCAACTA+AGG - Chr5:19524443-19524462 None:intergenic 50.0%
CTGCCCACCCAAAATGTGAA+AGG + Chr5:19526321-19526340 MsG0580025486.01.T01:three_prime_UTR 50.0%
GAGCAAACCTCGTAGGTGAA+AGG + Chr5:19524012-19524031 MsG0580025486.01.T01:intron 50.0%
GATGAGAGGAACACGTAGTG+TGG - Chr5:19522306-19522325 None:intergenic 50.0%
GATGTTGTGTGTGATTGCGG+AGG + Chr5:19524189-19524208 MsG0580025486.01.T01:intron 50.0%
GGAGAGAGAGAGATTCGAGA+GGG - Chr5:19522367-19522386 None:intergenic 50.0%
GGCAACAGTTCAGAAGATGC+TGG - Chr5:19523739-19523758 None:intergenic 50.0%
GGGAGAGAAGAGAGAGAAGA+AGG - Chr5:19522347-19522366 None:intergenic 50.0%
GTCAACACCCAGTATCCACA+TGG - Chr5:19524865-19524884 None:intergenic 50.0%
GTCACAAGCAGCCATGTGAT+AGG - Chr5:19524803-19524822 None:intergenic 50.0%
GTGGCTTCACTTGCAGTTGT+GGG + Chr5:19524231-19524250 MsG0580025486.01.T01:intron 50.0%
TCATCGGAGATATCGGTGGA+TGG - Chr5:19522458-19522477 None:intergenic 50.0%
TCGAAGCCCTGCAAGAATAC+AGG + Chr5:19523904-19523923 MsG0580025486.01.T01:intron 50.0%
TCTTCATTCCCTTCCTCCAC+CGG - Chr5:19522649-19522668 None:intergenic 50.0%
TGAAGCGGAGAGAAGGGAAT+CGG - Chr5:19522400-19522419 None:intergenic 50.0%
TGACACTCCACATTGAAGGC+TGG - Chr5:19523216-19523235 None:intergenic 50.0%
TTCGGTTCCTTCGAAGAACG+AGG + Chr5:19522541-19522560 MsG0580025486.01.T01:five_prime_UTR 50.0%
TTGGCAACCACATTCTCCAG+AGG - Chr5:19526048-19526067 None:intergenic 50.0%
! AGAAGCTCTGGTTCCTCAAC+CGG - Chr5:19522805-19522824 None:intergenic 50.0%
! GATGCCCAAAGGCACAACTA+AGG - Chr5:19525395-19525414 None:intergenic 50.0%
! GCACTGACACTCCACATTGA+AGG - Chr5:19523220-19523239 None:intergenic 50.0%
!! AGCAGCAGGAGCATTACCTT+TGG + Chr5:19523765-19523784 MsG0580025486.01.T01:CDS 50.0%
!! GTGACGGAGGGAGTATTGAT+AGG + Chr5:19524818-19524837 MsG0580025486.01.T01:intron 50.0%
!! TCACATTTTGGGTGGGCAGA+GGG - Chr5:19526320-19526339 None:intergenic 50.0%
!! TTCACATTTTGGGTGGGCAG+AGG - Chr5:19526321-19526340 None:intergenic 50.0%
ACTGAGCTTGGGTTTCGAGC+TGG + Chr5:19522712-19522731 MsG0580025486.01.T01:CDS 55.0%
ATAGGACTGTGGCCTGATCC+AGG + Chr5:19524836-19524855 MsG0580025486.01.T01:intron 55.0%
CAAGAGCTTGTCCTCTCACC+AGG - Chr5:19526117-19526136 None:intergenic 55.0%
CACAAGCACGGATACGGACA+GGG + Chr5:19523080-19523099 MsG0580025486.01.T01:intron 55.0%
CACTCCACATTGAAGGCTGG+TGG - Chr5:19523213-19523232 None:intergenic 55.0%
CCAGGCTTCCATGTGGATAC+TGG + Chr5:19524854-19524873 MsG0580025486.01.T01:intron 55.0%
CCAGTATCCACATGGAAGCC+TGG - Chr5:19524857-19524876 None:intergenic 55.0%
CGGAGATGAAGCGGAGAGAA+GGG - Chr5:19522406-19522425 None:intergenic 55.0%
CGTGGCTTCACTTGCAGTTG+TGG + Chr5:19524230-19524249 MsG0580025486.01.T01:intron 55.0%
CTGAGCTTGGGTTTCGAGCT+GGG + Chr5:19522713-19522732 MsG0580025486.01.T01:CDS 55.0%
CTGGTGAGAGGACAAGCTCT+TGG + Chr5:19526115-19526134 MsG0580025486.01.T01:CDS 55.0%
CTGTTGCCTCTTCTAGCAGC+AGG + Chr5:19523751-19523770 MsG0580025486.01.T01:CDS 55.0%
GAAGGAGCGAAAATGACGCC+GGG + Chr5:19522575-19522594 MsG0580025486.01.T01:CDS 55.0%
GATGGTTTCGCTTCGGGTAC+GGG - Chr5:19522500-19522519 None:intergenic 55.0%
TCCACATGGAAGCCTGGATC+AGG - Chr5:19524851-19524870 None:intergenic 55.0%
TCCAGCATCGCTATAGCTCC+CGG - Chr5:19522596-19522615 None:intergenic 55.0%
TGTCGTGTCAGACTCTGACC+CGG + Chr5:19523176-19523195 MsG0580025486.01.T01:intron 55.0%
TTCTAACCCTACCGCTGCTC+CGG + Chr5:19522783-19522802 MsG0580025486.01.T01:CDS 55.0%
TTGGGTGGGCAGAGGGAAAT+GGG - Chr5:19526313-19526332 None:intergenic 55.0%
TTTCGCTTCGGGTACGGGTT+CGG - Chr5:19522495-19522514 None:intergenic 55.0%
TTTGGGTGGGCAGAGGGAAA+TGG - Chr5:19526314-19526333 None:intergenic 55.0%
! ACATGGCTGCTTGTGACGGA+GGG + Chr5:19524806-19524825 MsG0580025486.01.T01:intron 55.0%
! GAAAAGGAGAAGGGGGTGCA+GGG + Chr5:19524920-19524939 MsG0580025486.01.T01:CDS 55.0%
! GAGGCCCCAGGCTAAGATTT+TGG - Chr5:19526008-19526027 None:intergenic 55.0%
! TCTCGGTCCTCTGGAGAATG+TGG + Chr5:19526038-19526057 MsG0580025486.01.T01:CDS 55.0%
!! TACTGGGTGTTGACCCCCAT+AGG + Chr5:19524871-19524890 MsG0580025486.01.T01:CDS 55.0%
AAGGGAATCGGTGAGGAGCG+AGG - Chr5:19522388-19522407 None:intergenic 60.0%
ATCAGCGTCTCCGATGTCGC+CGG - Chr5:19522432-19522451 None:intergenic 60.0%
CACATGGCTGCTTGTGACGG+AGG + Chr5:19524805-19524824 MsG0580025486.01.T01:intron 60.0%
CGGAGAGAAGGGAATCGGTG+AGG - Chr5:19522395-19522414 None:intergenic 60.0%
CTGGTAGGAGCCATAGGCTC+TGG + Chr5:19525076-19525095 MsG0580025486.01.T01:intron 60.0%
GCAACAGTCTCTCGGTCCTC+TGG + Chr5:19526029-19526048 MsG0580025486.01.T01:CDS 60.0%
GCACAAGCACGGATACGGAC+AGG + Chr5:19523079-19523098 MsG0580025486.01.T01:intron 60.0%
GCACCCACCAGCCTTCAATG+TGG + Chr5:19523206-19523225 MsG0580025486.01.T01:intron 60.0%
GCCTGATCCAGGCTTCCATG+TGG + Chr5:19524847-19524866 MsG0580025486.01.T01:intron 60.0%
GCGGAGATGAAGCGGAGAGA+AGG - Chr5:19522407-19522426 None:intergenic 60.0%
GCTTGGGTTTCGAGCTGGGT+CGG + Chr5:19522717-19522736 MsG0580025486.01.T01:CDS 60.0%
GGACCGAGAGACTGTTGCAG+AGG - Chr5:19526027-19526046 None:intergenic 60.0%
GGAGCTTCGGTAGCAGAAGC+CGG - Chr5:19522628-19522647 None:intergenic 60.0%
GGAGGTTCGAGCTGAGGTGT+CGG + Chr5:19522738-19522757 MsG0580025486.01.T01:CDS 60.0%
GGCTTCTGCTACCGAAGCTC+CGG + Chr5:19522627-19522646 MsG0580025486.01.T01:CDS 60.0%
GGGCCTCTGCAACAGTCTCT+CGG + Chr5:19526021-19526040 MsG0580025486.01.T01:CDS 60.0%
GGGGACTCCCTTCTCTTGCA+AGG - Chr5:19526203-19526222 None:intergenic 60.0%
TGGGTGGGCAGAGGGAAATG+GGG - Chr5:19526312-19526331 None:intergenic 60.0%
TGGTTCCTCAACCGGAGCAG+CGG - Chr5:19522797-19522816 None:intergenic 60.0%
TTCTGCTACCGAAGCTCCGG+TGG + Chr5:19522630-19522649 MsG0580025486.01.T01:CDS 60.0%
! GGAAAAGGAGAAGGGGGTGC+AGG + Chr5:19524919-19524938 MsG0580025486.01.T01:CDS 60.0%
!! AGCTGAGGTGTCGGAGTTCG+TGG + Chr5:19522747-19522766 MsG0580025486.01.T01:CDS 60.0%
ACCGAAGCTCCGGTGGAGGA+AGG + Chr5:19522637-19522656 MsG0580025486.01.T01:CDS 65.0%
CCCTTCCTCCACCGGAGCTT+CGG - Chr5:19522641-19522660 None:intergenic 65.0%
CCGAAGCTCCGGTGGAGGAA+GGG + Chr5:19522638-19522657 MsG0580025486.01.T01:CDS 65.0%
CCTCAACCGGAGCAGCGGTA+GGG - Chr5:19522792-19522811 None:intergenic 65.0%
GAGACTGTTGCAGAGGCCCC+AGG - Chr5:19526020-19526039 None:intergenic 65.0%
GCCGGGAGCTATAGCGATGC+TGG + Chr5:19522592-19522611 MsG0580025486.01.T01:CDS 65.0%
GTCGGAGTTCGTGGCTCAGC+TGG + Chr5:19522756-19522775 MsG0580025486.01.T01:CDS 65.0%
GTGGGCAGAGGGAAATGGGG+TGG - Chr5:19526309-19526328 None:intergenic 65.0%
TCCTCAACCGGAGCAGCGGT+AGG - Chr5:19522793-19522812 None:intergenic 65.0%
TGCTACCGAAGCTCCGGTGG+AGG + Chr5:19522633-19522652 MsG0580025486.01.T01:CDS 65.0%
TGGGTCGGAGGTTCGAGCTG+AGG + Chr5:19522732-19522751 MsG0580025486.01.T01:CDS 65.0%
TGGGTTTCGAGCTGGGTCGG+AGG + Chr5:19522720-19522739 MsG0580025486.01.T01:CDS 65.0%
! CTGGTGGGTGCTGTCAGACC+GGG - Chr5:19523197-19523216 None:intergenic 65.0%
! GCTGGTGGGTGCTGTCAGAC+CGG - Chr5:19523198-19523217 None:intergenic 65.0%
AGCGTCTCCGATGTCGCCGG+CGG - Chr5:19522429-19522448 None:intergenic 70.0%
ATCTCCGCCGCCGGCGACAT+CGG + Chr5:19522419-19522438 MsG0580025486.01.T01:five_prime_UTR 70.0%
CCCTACCGCTGCTCCGGTTG+AGG + Chr5:19522789-19522808 MsG0580025486.01.T01:CDS 70.0%
CTCCGCTTCATCTCCGCCGC+CGG + Chr5:19522410-19522429 MsG0580025486.01.T01:five_prime_UTR 70.0%
CGCCGGCGGCGGAGATGAAG+CGG - Chr5:19522415-19522434 None:intergenic 75.0%
GTCTCCGATGTCGCCGGCGG+CGG - Chr5:19522426-19522445 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 19522112 19526547 19522112 ID=MsG0580025486.01;Name=MsG0580025486.01
Chr5 mRNA 19522112 19526547 19522112 ID=MsG0580025486.01.T01;Parent=MsG0580025486.01;Name=MsG0580025486.01.T01;_AED=0.30;_eAED=0.41;_QI=456|0|0.4|1|1|1|5|314|320
Chr5 exon 19522112 19522845 19522112 ID=MsG0580025486.01.T01:exon:8256;Parent=MsG0580025486.01.T01
Chr5 exon 19522961 19523021 19522961 ID=MsG0580025486.01.T01:exon:8257;Parent=MsG0580025486.01.T01
Chr5 exon 19523733 19523845 19523733 ID=MsG0580025486.01.T01:exon:8258;Parent=MsG0580025486.01.T01
Chr5 exon 19524858 19525059 19524858 ID=MsG0580025486.01.T01:exon:8259;Parent=MsG0580025486.01.T01
Chr5 exon 19525925 19526547 19525925 ID=MsG0580025486.01.T01:exon:8260;Parent=MsG0580025486.01.T01
Chr5 five_prime_UTR 19522112 19522567 19522112 ID=MsG0580025486.01.T01:five_prime_utr;Parent=MsG0580025486.01.T01
Chr5 CDS 19522568 19522845 19522568 ID=MsG0580025486.01.T01:cds;Parent=MsG0580025486.01.T01
Chr5 CDS 19522961 19523021 19522961 ID=MsG0580025486.01.T01:cds;Parent=MsG0580025486.01.T01
Chr5 CDS 19523733 19523845 19523733 ID=MsG0580025486.01.T01:cds;Parent=MsG0580025486.01.T01
Chr5 CDS 19524858 19525059 19524858 ID=MsG0580025486.01.T01:cds;Parent=MsG0580025486.01.T01
Chr5 CDS 19525925 19526233 19525925 ID=MsG0580025486.01.T01:cds;Parent=MsG0580025486.01.T01
Chr5 three_prime_UTR 19526234 19526547 19526234 ID=MsG0580025486.01.T01:three_prime_utr;Parent=MsG0580025486.01.T01
Gene Sequence

>MsG0580025486.01.T01

ATGGGGAGAAGGAGCGAAAATGACGCCGGGAGCTATAGCGATGCTGGAAATGGAACTCCGGCTTCTGCTACCGAAGCTCCGGTGGAGGAAGGGAATGAAGAACTTGAGCGGTTGAAACGTGCTCTTGTTGATACGGTTTATGGGACTGAGCTTGGGTTTCGAGCTGGGTCGGAGGTTCGAGCTGAGGTGTCGGAGTTCGTGGCTCAGCTGGAAGCTTCTAACCCTACCGCTGCTCCGGTTGAGGAACCAGAGCTTCTTAATGGAAATTGGGTGTTGCTTTATAATAAATTCAAACATGTGAAACTTTCGAATGAGTCTTTTACAAATTTTAATCATAGGGTACCAGCATCTTCTGAACTGTTGCCTCTTCTAGCAGCAGGAGCATTACCTTTGGTGAAGGTGGATAAAATCTTGCAAACAATTGATACCTATAGCTCCACTGTTGTGAACTCGCTTCCATGTGGATACTGGGTGTTGACCCCCATAGGTCAGCAATTTGGAAAGTGTATGTCAGGAAAAGGAGAAGGGGGTGCAGGGAAGAATGTAGTTACAATTGGTGAGGTGGTAGGAATATTCTCTAGGTGGTTAGATGAGAGAGTATGTAATGATGAGATAGTGAGTGAGAGAATCATTCATGCTTTTGGTGATTTGTTGGTTACATTCAAAGAAGGATCACTACAGCCTCCAGAGATAAAGTCTAAAATTGACCTACCAGAAAACATAAACATTTTTGGCCAAAATCTTAGCCTGGGGCCTCTGCAACAGTCTCTCGGTCCTCTGGAGAATGTGGTTGCCAATATATCACGTGTCATTTCAGGTCAGTCACCTCTTAAGATTCCCATACCTGGTGAGAGGACAAGCTCTTGGCTTCTTACCACATACCTTGATAAGGACTTGAGAATATCAAGGGGAGATGGCGGTTTGTTTGTCCTTGCAAGAGAAGGGAGTCCCCTTCTTGATTAG

Protein sequence

>MsG0580025486.01.T01

MGRRSENDAGSYSDAGNGTPASATEAPVEEGNEELERLKRALVDTVYGTELGFRAGSEVRAEVSEFVAQLEASNPTAAPVEEPELLNGNWVLLYNKFKHVKLSNESFTNFNHRVPASSELLPLLAAGALPLVKVDKILQTIDTYSSTVVNSLPCGYWVLTPIGQQFGKCMSGKGEGGAGKNVVTIGEVVGIFSRWLDERVCNDEIVSERIIHAFGDLLVTFKEGSLQPPEIKSKIDLPENINIFGQNLSLGPLQQSLGPLENVVANISRVISGQSPLKIPIPGERTSSWLLTTYLDKDLRISRGDGGLFVLAREGSPLLD*