AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025464.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025464.01.T01 MTR_5g027460 98.723 548 5 1 1 548 1 546 0.0 1093
MsG0580025464.01.T01 MTR_8g071050 58.627 510 184 8 46 548 15 504 0.0 584
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 173 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGCTCTCCTGTGGTTTC+TGG 0.125300 5:+19134728 MsG0580025464.01.T01:CDS
CCTTCTAGATTTGAAACTTT+TGG 0.246591 5:+19131563 MsG0580025464.01.T01:CDS
TGCTGAAAACTTTGAACTTA+TGG 0.252202 5:-19133550 None:intergenic
GCCATAGCTGCACCAATTCT+TGG 0.258567 5:+19133609 MsG0580025464.01.T01:CDS
AGAGCGATATTATGAGTCTT+TGG 0.272001 5:+19133982 MsG0580025464.01.T01:CDS
GCTACTGCTGCTGGTTGTTT+TGG 0.277042 5:+19133903 MsG0580025464.01.T01:CDS
TCGCTTCTGTCTTCAGGGTT+TGG 0.279277 5:+19134365 MsG0580025464.01.T01:CDS
TTTAATTTAAGTTGAGGATT+TGG 0.281047 5:+19135017 MsG0580025464.01.T01:three_prime_UTR
TTCAAATATCCTCATGCTAT+TGG 0.284045 5:+19134122 MsG0580025464.01.T01:CDS
GGATATTTGAAGATGGAAAA+AGG 0.290219 5:-19134110 None:intergenic
GCTGCAACTGTGATGAGTTT+TGG 0.299283 5:-19133663 None:intergenic
GAGTGAGTAGGGTGGGGTAG+GGG 0.303807 5:-19131155 None:intergenic
GTTGAAGCTTCAAACGAAAA+TGG 0.305335 5:-19130973 None:intergenic
GTGGTTTAATTTGGCTTGTT+GGG 0.311746 5:+19134021 MsG0580025464.01.T01:CDS
AAGAAGGTGCTTTCTCTATA+TGG 0.325715 5:+19134516 MsG0580025464.01.T01:CDS
CGGTCGGAACCGGTCGGTTT+CGG 0.333262 5:-19131124 None:intergenic
TGAGTAGGGTGGGGTAGGGG+TGG 0.336880 5:-19131152 None:intergenic
CCGTTTCATGGCGTCGGATA+AGG 0.339822 5:-19131045 None:intergenic
CCAAAAGTTTCAAATCTAGA+AGG 0.341466 5:-19131563 None:intergenic
TGCTTTCTTGAGAGTTGTTC+CGG 0.346386 5:-19133835 None:intergenic
ACGGACACAGTCACTGGAAA+TGG 0.347797 5:+19134396 MsG0580025464.01.T01:CDS
GCTGGTGGTGCTGTTGCTGC+AGG 0.363219 5:+19134683 MsG0580025464.01.T01:CDS
CATCGAGTTCGTGTATCATA+TGG 0.363899 5:-19133953 None:intergenic
GCCATTCAGAGCACATCAAC+AGG 0.364880 5:+19134440 MsG0580025464.01.T01:CDS
ATCTTCATTCCCTACATTGC+TGG 0.366771 5:+19133741 MsG0580025464.01.T01:CDS
AGAGTGAGTAGGGTGGGGTA+GGG 0.372398 5:-19131156 None:intergenic
AGTGGTTTAATTTGGCTTGT+TGG 0.375868 5:+19134020 MsG0580025464.01.T01:CDS
CAGTTGGGCCAGGACGGATT+AGG 0.378121 5:+19134588 MsG0580025464.01.T01:CDS
TCAGGGTTTGGATTCTATTA+CGG 0.378827 5:+19134377 MsG0580025464.01.T01:CDS
TCAACGGTTACCTCTTTCAT+TGG 0.381125 5:-19131353 None:intergenic
GAGCGATATTATGAGTCTTT+GGG 0.383579 5:+19133983 MsG0580025464.01.T01:CDS
CATTTACACTACACAACAAT+TGG 0.389333 5:+19130710 None:intergenic
ACATCAATTGCTTGGGCTAC+AGG 0.393116 5:+19133582 MsG0580025464.01.T01:CDS
TTGTTGGACAGCTTTGCATT+AGG 0.398635 5:+19134213 MsG0580025464.01.T01:CDS
GGCGTCGGATAAGGCGGTTT+CGG 0.399315 5:-19131036 None:intergenic
AACAAGTGGGAAAAGGAAAT+AGG 0.402404 5:-19134264 None:intergenic
ATCCACGTTCGTCCGTTTCA+TGG 0.403361 5:-19131057 None:intergenic
GAGCTGCAGGTTTGTGTGTC+GGG 0.405501 5:+19134552 MsG0580025464.01.T01:CDS
GAGAGTGAGTAGGGTGGGGT+AGG 0.406878 5:-19131157 None:intergenic
AGAGCTAGAGAAGCTTATAA+TGG 0.410545 5:+19131518 MsG0580025464.01.T01:CDS
CGGACACAGTCACTGGAAAT+GGG 0.411485 5:+19134397 MsG0580025464.01.T01:CDS
TCACTTCATGCTACTGCTGC+TGG 0.412960 5:+19133894 MsG0580025464.01.T01:CDS
GGACGGATTAGGACTTCGTT+TGG 0.414500 5:+19134599 MsG0580025464.01.T01:CDS
CTTTCTCTATATGGTATGCT+TGG 0.415039 5:+19134525 MsG0580025464.01.T01:CDS
GGGTTCACAGTTGGTTCAGT+TGG 0.419215 5:+19134572 MsG0580025464.01.T01:CDS
GGTGGACAATCGGTCGGAAC+CGG 0.420660 5:-19131134 None:intergenic
CTCATCACAGTTGCAGCAAC+AGG 0.423526 5:+19133669 MsG0580025464.01.T01:CDS
CAACGGTTACCTCTTTCATT+GGG 0.429318 5:-19131352 None:intergenic
CTTGAGAGTTGTTCCGGTGA+AGG 0.430405 5:-19133829 None:intergenic
ACAGCTCTGTTGTGTAAGTC+AGG 0.431402 5:-19131485 None:intergenic
CTACTGTTTCACTTCAAGAA+TGG 0.440649 5:+19131678 MsG0580025464.01.T01:CDS
TGGAATGGACATCAATTGCT+TGG 0.448789 5:+19133574 MsG0580025464.01.T01:CDS
GTGCACGGGTGGATTGAAAC+GGG 0.452316 5:-19130995 None:intergenic
GTGGGGTAGGGGTGGACAAT+CGG 0.452395 5:-19131144 None:intergenic
CTCATGATCCGCGCCTTCAC+CGG 0.455419 5:+19133816 MsG0580025464.01.T01:CDS
AGTGGTAAGGTAAGAGAAGA+AGG 0.456262 5:-19131266 None:intergenic
GGTGTTAGATTGTGCTCCAT+CGG 0.459276 5:+19134490 MsG0580025464.01.T01:CDS
CGGTGAAGATGCAGATCGTT+GGG 0.462336 5:+19134333 MsG0580025464.01.T01:CDS
GGTTCACAGTTGGTTCAGTT+GGG 0.464283 5:+19134573 MsG0580025464.01.T01:CDS
AAAACTAATGAATGGATTGA+GGG 0.467601 5:+19134812 MsG0580025464.01.T01:three_prime_UTR
GGTGCACGGGTGGATTGAAA+CGG 0.468152 5:-19130996 None:intergenic
GTGTTAGATTGTGCTCCATC+GGG 0.470775 5:+19134491 MsG0580025464.01.T01:CDS
TTTCTTCATCCCAATGAAAG+AGG 0.476943 5:+19131343 MsG0580025464.01.T01:exon
AAGGAAAGGAAGCCAAGAAT+TGG 0.479551 5:-19133621 None:intergenic
TACGGTTCACACGGGTGCAC+GGG 0.479733 5:-19131009 None:intergenic
TATAATGGTTATGAAGAAGT+TGG 0.482116 5:+19131533 MsG0580025464.01.T01:CDS
TGGCACTCACTGCTCTCAAA+AGG 0.482913 5:+19131715 MsG0580025464.01.T01:CDS
GGAATGGACATCAATTGCTT+GGG 0.484450 5:+19133575 MsG0580025464.01.T01:CDS
ATCTTAACCACGCGCAGTAA+AGG 0.487567 5:-19134305 None:intergenic
GTAGTGAGAGTGAGTAGGGT+GGG 0.489933 5:-19131162 None:intergenic
TCATCACCCACGGTTGTGGC+CGG 0.492136 5:+19131086 MsG0580025464.01.T01:five_prime_UTR
GTACGGTTCACACGGGTGCA+CGG 0.493218 5:-19131010 None:intergenic
ATAATGAGAGGAAAGACAAC+AGG 0.494062 5:-19131635 None:intergenic
TTTGGAAACATCAGTGATGC+TGG 0.494313 5:+19134665 MsG0580025464.01.T01:CDS
TCTATTACGGACACAGTCAC+TGG 0.495368 5:+19134390 MsG0580025464.01.T01:CDS
GCCAAGAATTGGTGCAGCTA+TGG 0.496623 5:-19133610 None:intergenic
CCTTATCCGACGCCATGAAA+CGG 0.498526 5:+19131045 MsG0580025464.01.T01:five_prime_UTR
TTCGGTTTGTACGGTTCACA+CGG 0.503687 5:-19131018 None:intergenic
ACAATGAAACAAGTGGGAAA+AGG 0.508330 5:-19134271 None:intergenic
TGAATGGATTGAGGGATGAA+TGG 0.513135 5:+19134820 MsG0580025464.01.T01:three_prime_UTR
ATTTCGAGTCCGAAACCGAC+CGG 0.513227 5:+19131115 MsG0580025464.01.T01:five_prime_UTR
ACAGTTGGTTCAGTTGGGCC+AGG 0.514316 5:+19134578 MsG0580025464.01.T01:CDS
ATGGTGAGAGGACAGTGGTA+AGG 0.515351 5:-19131279 None:intergenic
GACACCACCTTCAGCTTCAA+CGG 0.516913 5:-19131369 None:intergenic
AGTAGCATGAAGTGAGAGGC+GGG 0.517268 5:-19133886 None:intergenic
CCCTGTTGATGTGCTCTGAA+TGG 0.519342 5:-19134441 None:intergenic
TGTGCTCCATCGGGAAAAGA+AGG 0.520552 5:+19134500 MsG0580025464.01.T01:CDS
TGCTATGATGCCAGCAATGT+AGG 0.522024 5:-19133751 None:intergenic
TAGTGTAGTGAGAGTGAGTA+GGG 0.523593 5:-19131166 None:intergenic
TCACTGGAAATGGGGACACT+TGG 0.526145 5:+19134406 MsG0580025464.01.T01:CDS
TTGTGTGTCGGGTTCACAGT+TGG 0.527867 5:+19134563 MsG0580025464.01.T01:CDS
CTGGTGGTGCTGTTGCTGCA+GGG 0.528747 5:+19134684 MsG0580025464.01.T01:CDS
AGAGCTGCAGGTTTGTGTGT+CGG 0.529302 5:+19134551 MsG0580025464.01.T01:CDS
CACGGTCATGGTCATGGTCA+AGG 0.531366 5:+19131410 MsG0580025464.01.T01:CDS
GAAGCTGAAGGTGGTGTCCT+TGG 0.531829 5:+19131374 MsG0580025464.01.T01:CDS
AGCTGCATTAGCAACTGTGC+TGG 0.533703 5:-19133775 None:intergenic
TCGGTGAAGATGCAGATCGT+TGG 0.534098 5:+19134332 MsG0580025464.01.T01:CDS
AAATATCCTCATGCTATTGG+AGG 0.534903 5:+19134125 MsG0580025464.01.T01:CDS
GTTCGTCCGTTTCATGGCGT+CGG 0.535179 5:-19131051 None:intergenic
TGCCGTCGAGGTGGAAGGAA+AGG 0.538718 5:-19133635 None:intergenic
GCTATGATGCCAGCAATGTA+GGG 0.540830 5:-19133750 None:intergenic
GAAGGTGGTGTCCTTGGCCA+TGG 0.540959 5:+19131380 MsG0580025464.01.T01:CDS
GCTGGATTCTTCAAAGTCAC+AGG 0.541392 5:+19133717 MsG0580025464.01.T01:CDS
GAGGAAAGAAAATAAAAGAG+AGG 0.541610 5:-19131244 None:intergenic
GGAGGACGACACATGCAGAT+TGG 0.543278 5:-19130769 None:intergenic
CGTGTCCATGTCCATGGCCA+AGG 0.543635 5:-19131391 None:intergenic
CGGTGAAGGCGCGGATCATG+AGG 0.544790 5:-19133815 None:intergenic
GGAAGATAAAGCATTCAAGT+TGG 0.546520 5:-19130790 None:intergenic
TTCCTTTCCTTCCACCTCGA+CGG 0.548596 5:+19133633 MsG0580025464.01.T01:CDS
TGCAGGTATAACAAACTCAC+TGG 0.550122 5:+19133522 MsG0580025464.01.T01:intron
GGTTCACACGGGTGCACGGG+TGG 0.554440 5:-19131006 None:intergenic
AACGAAGTCCTAATCCGTCC+TGG 0.555119 5:-19134596 None:intergenic
CCTTGCATCATTCACAACAA+TGG 0.558736 5:+19134163 MsG0580025464.01.T01:CDS
TAAGGCGGTTTCGGTTTGTA+CGG 0.558950 5:-19131027 None:intergenic
GGTGTCCTTGGCCATGGACA+TGG 0.565826 5:+19131386 MsG0580025464.01.T01:CDS
TCTCAATCCGGCCACAACCG+TGG 0.566117 5:-19131093 None:intergenic
TGTAGTGAGAGTGAGTAGGG+TGG 0.566435 5:-19131163 None:intergenic
CTCAATCCGGCCACAACCGT+GGG 0.571377 5:-19131092 None:intergenic
GTGACTTTGAAGAATCCAGC+CGG 0.572168 5:-19133714 None:intergenic
GAATGGAACAAAACTCATCC+TGG 0.572504 5:+19131695 MsG0580025464.01.T01:CDS
GCAGCTTCAGAAGTTGCTAA+AGG 0.575778 5:+19131440 MsG0580025464.01.T01:CDS
AGCATGAGGATATTTGAAGA+TGG 0.576279 5:-19134117 None:intergenic
CGCCATGAAACGGACGAACG+TGG 0.578984 5:+19131055 MsG0580025464.01.T01:five_prime_UTR
GAAATTGCCGTCGAGGTGGA+AGG 0.582982 5:-19133640 None:intergenic
TAGTGAGAGTGAGTAGGGTG+GGG 0.584425 5:-19131161 None:intergenic
GCTACAACCTTTACTGCGCG+TGG 0.586433 5:+19134298 MsG0580025464.01.T01:CDS
AGATAAAGCATTCAAGTTGG+AGG 0.587025 5:-19130787 None:intergenic
TATGCTTGGATGAGAGCTGC+AGG 0.590623 5:+19134539 MsG0580025464.01.T01:CDS
CTAGTGTAGTGAGAGTGAGT+AGG 0.590844 5:-19131167 None:intergenic
TTGGTTCAGTTGGGCCAGGA+CGG 0.593555 5:+19134582 MsG0580025464.01.T01:CDS
GGACGACACATGCAGATTGG+AGG 0.595030 5:-19130766 None:intergenic
TCGGACTCGAAATCTCAATC+CGG 0.596024 5:-19131105 None:intergenic
CAGCAGTAGCATGAAGTGAG+AGG 0.596792 5:-19133890 None:intergenic
CATGGACACGGTCATGGTCA+TGG 0.596886 5:+19131404 MsG0580025464.01.T01:CDS
GAGGTAACCGTTGAAGCTGA+AGG 0.598999 5:+19131362 MsG0580025464.01.T01:CDS
CTTGAAGTGAAACAGTAGGT+GGG 0.599323 5:-19131673 None:intergenic
TTGAAGTGAAACAGTAGGTG+GGG 0.600101 5:-19131672 None:intergenic
CTTGGCCATGGACATGGACA+CGG 0.602060 5:+19131392 MsG0580025464.01.T01:CDS
ACAGTTGCAGCAACAGGTGT+AGG 0.603510 5:+19133675 MsG0580025464.01.T01:CDS
CATGACCGTGTCCATGTCCA+TGG 0.605139 5:-19131397 None:intergenic
TTTCATGGCGTCGGATAAGG+CGG 0.608139 5:-19131042 None:intergenic
GGTAGGGGTGGACAATCGGT+CGG 0.608288 5:-19131140 None:intergenic
TCTTGAAGTGAAACAGTAGG+TGG 0.612936 5:-19131674 None:intergenic
GAGTAATGGTGAGAGGACAG+TGG 0.613645 5:-19131284 None:intergenic
TGACTTTGAAGAATCCAGCC+GGG 0.614345 5:-19133713 None:intergenic
TCGGTTTGTACGGTTCACAC+GGG 0.615041 5:-19131017 None:intergenic
CAGTAGCATGAAGTGAGAGG+CGG 0.616592 5:-19133887 None:intergenic
TGAAGCTGACTGATAATGAG+AGG 0.617124 5:-19131647 None:intergenic
CATTCTTGAAGTGAAACAGT+AGG 0.619087 5:-19131677 None:intergenic
CATGGACATGGACACGGTCA+TGG 0.624917 5:+19131398 MsG0580025464.01.T01:CDS
GGTAAGGTAAGAGAAGAAGG+AGG 0.628850 5:-19131263 None:intergenic
GAGTTGTTCCGGTGAAGGCG+CGG 0.634731 5:-19133824 None:intergenic
CAGAACAAAAGCAAATGCAA+TGG 0.636950 5:-19134236 None:intergenic
CGAAAATGAGATCGAATCAG+TGG 0.639897 5:-19134075 None:intergenic
GAATCTAAACCAGAAACCAC+AGG 0.641090 5:-19134737 None:intergenic
AGCAGCGACAATGAAACAAG+TGG 0.645033 5:-19134278 None:intergenic
GACAATCGGTCGGAACCGGT+CGG 0.645067 5:-19131130 None:intergenic
TCAGAATGAGTAATGGTGAG+AGG 0.646029 5:-19131291 None:intergenic
GAGGGATGAATGGTGGTGCA+TGG 0.650033 5:+19134830 MsG0580025464.01.T01:three_prime_UTR
GCAGCTCACACACAGCATCT+CGG 0.651056 5:+19133792 MsG0580025464.01.T01:CDS
GCAGCGACAATGAAACAAGT+GGG 0.652430 5:-19134277 None:intergenic
TGCAGATTGGAGGCAAACGA+AGG 0.655336 5:-19130756 None:intergenic
TTGGGAAATTGCCGTCGAGG+TGG 0.658482 5:-19133644 None:intergenic
GGACACAGTCACTGGAAATG+GGG 0.658492 5:+19134398 MsG0580025464.01.T01:CDS
TAACGAGAGAAGCTCTCCTG+TGG 0.660829 5:+19134721 MsG0580025464.01.T01:CDS
CCATTCAGAGCACATCAACA+GGG 0.673190 5:+19134441 MsG0580025464.01.T01:CDS
ATGGATTGAGGGATGAATGG+TGG 0.673864 5:+19134823 MsG0580025464.01.T01:three_prime_UTR
GCAAGACCTCCAATAGCATG+AGG 0.680349 5:-19134131 None:intergenic
CCATTGTTGTGAATGATGCA+AGG 0.682905 5:-19134163 None:intergenic
GTAACCGTTGAAGCTGAAGG+TGG 0.694916 5:+19131365 MsG0580025464.01.T01:CDS
GCGCGTGGTTAAGATGAACT+CGG 0.697491 5:+19134313 MsG0580025464.01.T01:CDS
GGAAACATCAGTGATGCTGG+TGG 0.712676 5:+19134668 MsG0580025464.01.T01:CDS
GGTCATGGTCATGGTCAAGG+TGG 0.721186 5:+19131413 MsG0580025464.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCAAATAATAATTTCAA+AGG - Chr5:19133320-19133339 None:intergenic 10.0%
!! TATATTTAAATATTTACACT+AGG + Chr5:19132768-19132787 MsG0580025464.01.T01:intron 10.0%
!!! TCTCTTTTTTTTTTTTATTT+TGG - Chr5:19132868-19132887 None:intergenic 10.0%
!!! TTTTAAACAATTATTATCTA+GGG + Chr5:19133236-19133255 MsG0580025464.01.T01:intron 10.0%
!!! TTTTTAAACAATTATTATCT+AGG + Chr5:19133235-19133254 MsG0580025464.01.T01:intron 10.0%
!! AAAACTATAAACTTACAAAT+AGG - Chr5:19131817-19131836 None:intergenic 15.0%
!! AAACTATAAACTTACAAATA+GGG - Chr5:19131816-19131835 None:intergenic 15.0%
!! AATATTAATATTATCCTCAA+CGG + Chr5:19132677-19132696 MsG0580025464.01.T01:intron 15.0%
!! AGAAAATAAGAAAGAAAAAA+GGG - Chr5:19131322-19131341 None:intergenic 15.0%
!! GAAAAAAAAAAACTAATGAA+TGG + Chr5:19134804-19134823 MsG0580025464.01.T01:three_prime_UTR 15.0%
!! GCAAATTTAAATTTAACTAT+TGG + Chr5:19132503-19132522 MsG0580025464.01.T01:intron 15.0%
!! GTAAATTTGAATTTAATTGT+CGG + Chr5:19133123-19133142 MsG0580025464.01.T01:intron 15.0%
!!! ACAAAATTTACCTTATTTTA+TGG - Chr5:19132279-19132298 None:intergenic 15.0%
!!! ATTTTTCAAAAAATACAACT+TGG - Chr5:19132032-19132051 None:intergenic 15.0%
!!! GATTAAATCATAATTCTTTT+TGG - Chr5:19133346-19133365 None:intergenic 15.0%
!!! TACAATATTTTGTATGATTT+AGG + Chr5:19132094-19132113 MsG0580025464.01.T01:intron 15.0%
!!! TTTCTTTTTAATTTAAGTTG+AGG + Chr5:19135011-19135030 MsG0580025464.01.T01:three_prime_UTR 15.0%
!!! TTTTACTAAGAAAAAAGTAA+GGG + Chr5:19132223-19132242 MsG0580025464.01.T01:intron 15.0%
!!! TTTTTACTAAGAAAAAAGTA+AGG + Chr5:19132222-19132241 MsG0580025464.01.T01:intron 15.0%
!! AAAATAAGAAAGAAAAAAGG+GGG - Chr5:19131320-19131339 None:intergenic 20.0%
!! AATAGTTAGAAATATCTAAG+TGG - Chr5:19131923-19131942 None:intergenic 20.0%
!! ATAGTTAGAAATATCTAAGT+GGG - Chr5:19131922-19131941 None:intergenic 20.0%
!! ATATTTATTGGAGATCTTTA+AGG - Chr5:19132973-19132992 None:intergenic 20.0%
!! GAAAATAAGAAAGAAAAAAG+GGG - Chr5:19131321-19131340 None:intergenic 20.0%
!! GAAATTTAGAAGAAAAAAAG+TGG - Chr5:19130950-19130969 None:intergenic 20.0%
!! GAGAAAATAAGAAAGAAAAA+AGG - Chr5:19131323-19131342 None:intergenic 20.0%
!! TAAGTAAAGTACATAAATTC+AGG - Chr5:19132061-19132080 None:intergenic 20.0%
!! TCAAGTACAATAATACAAAA+TGG + Chr5:19133276-19133295 MsG0580025464.01.T01:intron 20.0%
!! TTTACTAAGAAAAAAGTAAG+GGG + Chr5:19132224-19132243 MsG0580025464.01.T01:intron 20.0%
!!! AAGTGCTATATACTTTTTTT+AGG + Chr5:19133076-19133095 MsG0580025464.01.T01:intron 20.0%
!!! AATTTGCTTGTATATATCAA+TGG - Chr5:19132490-19132509 None:intergenic 20.0%
!!! AGTGCTATATACTTTTTTTA+GGG + Chr5:19133077-19133096 MsG0580025464.01.T01:intron 20.0%
!!! ATAATTTCAAAGGTTTCTTT+TGG - Chr5:19133310-19133329 None:intergenic 20.0%
!!! ATGTAGTTTATTTTTTCACT+AGG + Chr5:19133031-19133050 MsG0580025464.01.T01:intron 20.0%
!!! TAATCAATCAATGTTTTGAA+GGG + Chr5:19133361-19133380 MsG0580025464.01.T01:intron 20.0%
!!! TTAATCAATCAATGTTTTGA+AGG + Chr5:19133360-19133379 MsG0580025464.01.T01:intron 20.0%
!!! TTGTATGATTGATTTTAGTT+AGG + Chr5:19134933-19134952 MsG0580025464.01.T01:three_prime_UTR 20.0%
!!! TTTAATTTAAGTTGAGGATT+TGG + Chr5:19135017-19135036 MsG0580025464.01.T01:three_prime_UTR 20.0%
!!! TTTTTTGAAAAAAGTAGTAG+TGG + Chr5:19132126-19132145 MsG0580025464.01.T01:intron 20.0%
! AAATAAGAAAGAAAAAAGGG+GGG - Chr5:19131319-19131338 None:intergenic 25.0%
! AAGAAACAAAAAATCTGTCA+TGG - Chr5:19130814-19130833 None:intergenic 25.0%
! AGATCTCCAATAAATATGAT+TGG + Chr5:19132976-19132995 MsG0580025464.01.T01:intron 25.0%
! ATAGGTCCAATCATATTTAT+TGG - Chr5:19132985-19133004 None:intergenic 25.0%
! ATTAGCACATATGTAAACTT+TGG - Chr5:19133488-19133507 None:intergenic 25.0%
! GATATTTGAAGATGGAAAAA+GGG - Chr5:19134112-19134131 None:intergenic 25.0%
! TATAATGGTTATGAAGAAGT+TGG + Chr5:19131533-19131552 MsG0580025464.01.T01:CDS 25.0%
! TGTTTAGGAAAAACAACAAA+AGG - Chr5:19131204-19131223 None:intergenic 25.0%
! TTACTAAGAAAAAAGTAAGG+GGG + Chr5:19132225-19132244 MsG0580025464.01.T01:intron 25.0%
!! AAATTTTCAAAAGATGACAG+AGG - Chr5:19132637-19132656 None:intergenic 25.0%
!! GTATATATCAATGGTTGATA+TGG - Chr5:19132481-19132500 None:intergenic 25.0%
!! TATAGTTTGCAATCATGAAA+AGG + Chr5:19132336-19132355 MsG0580025464.01.T01:intron 25.0%
!!! AAAAACTAATGAATGGATTG+AGG + Chr5:19134811-19134830 MsG0580025464.01.T01:three_prime_UTR 25.0%
!!! AAAACTAATGAATGGATTGA+GGG + Chr5:19134812-19134831 MsG0580025464.01.T01:three_prime_UTR 25.0%
!!! ATTTTTTGTTTCTTTGGTTG+AGG + Chr5:19130820-19130839 MsG0580025464.01.T01:five_prime_UTR 25.0%
!!! CTCTCTCTTGTTTTATTTTT+TGG - Chr5:19132529-19132548 None:intergenic 25.0%
!!! TAGTTTATTTTTTCACTAGG+TGG + Chr5:19133034-19133053 MsG0580025464.01.T01:intron 25.0%
!!! TGAAAGTGGTTTTTGAAAAA+AGG - Chr5:19132419-19132438 None:intergenic 25.0%
!!! TGACAGATTTTTTGTTTCTT+TGG + Chr5:19130814-19130833 MsG0580025464.01.T01:five_prime_UTR 25.0%
AAATAAACCATAGTCTCAAG+TGG - Chr5:19132727-19132746 None:intergenic 30.0%
AATTAAAGACTTAACCGTTG+AGG - Chr5:19132694-19132713 None:intergenic 30.0%
ACATAGGGTTCCATAAAATA+AGG + Chr5:19132266-19132285 MsG0580025464.01.T01:intron 30.0%
ATGCAACAGTAGAAAAAAAG+GGG + Chr5:19134901-19134920 MsG0580025464.01.T01:three_prime_UTR 30.0%
CATACAAGTTTCTTACACAT+AGG - Chr5:19133003-19133022 None:intergenic 30.0%
CATGCAACAGTAGAAAAAAA+GGG + Chr5:19134900-19134919 MsG0580025464.01.T01:three_prime_UTR 30.0%
CCAAAAGTTTCAAATCTAGA+AGG - Chr5:19131566-19131585 None:intergenic 30.0%
CTATGTGTAAGAAACTTGTA+TGG + Chr5:19133001-19133020 MsG0580025464.01.T01:intron 30.0%
GAGGAAAGAAAATAAAAGAG+AGG - Chr5:19131247-19131266 None:intergenic 30.0%
GGATATTTGAAGATGGAAAA+AGG - Chr5:19134113-19134132 None:intergenic 30.0%
GGTACCAAGGTTAATAAATA+GGG - Chr5:19132460-19132479 None:intergenic 30.0%
TAAAAACAGCTTCATCTTGT+CGG - Chr5:19133199-19133218 None:intergenic 30.0%
TCAACCCTATTTATTAACCT+TGG + Chr5:19132453-19132472 MsG0580025464.01.T01:intron 30.0%
TGCTGAAAACTTTGAACTTA+TGG - Chr5:19133553-19133572 None:intergenic 30.0%
TGGTACCAAGGTTAATAAAT+AGG - Chr5:19132461-19132480 None:intergenic 30.0%
TTACATATGTGCTAATGTAC+TGG + Chr5:19133492-19133511 MsG0580025464.01.T01:intron 30.0%
TTCAAATATCCTCATGCTAT+TGG + Chr5:19134122-19134141 MsG0580025464.01.T01:CDS 30.0%
TTCATGATTGCAAACTATAG+TGG - Chr5:19132335-19132354 None:intergenic 30.0%
! AAGTTCAAAGTTTTCAGCAT+TGG + Chr5:19133554-19133573 MsG0580025464.01.T01:CDS 30.0%
! CGATTTTCAGTGGTTTAATT+TGG + Chr5:19134012-19134031 MsG0580025464.01.T01:CDS 30.0%
! TATTTTATGGAACCCTATGT+TGG - Chr5:19132266-19132285 None:intergenic 30.0%
!! ACAACAATGGCTATTTTCAT+GGG + Chr5:19134176-19134195 MsG0580025464.01.T01:CDS 30.0%
!! CCTTCTAGATTTGAAACTTT+TGG + Chr5:19131563-19131582 MsG0580025464.01.T01:CDS 30.0%
!! CTAGATTTGAAACTTTTGGT+TGG + Chr5:19131567-19131586 MsG0580025464.01.T01:CDS 30.0%
!! TAATAAATAGGGTTGATGTC+CGG - Chr5:19132449-19132468 None:intergenic 30.0%
!!! AAGTGGGTTTTTTTTTGCTA+GGG - Chr5:19131998-19132017 None:intergenic 30.0%
!!! TAAGTGGGTTTTTTTTTGCT+AGG - Chr5:19131999-19132018 None:intergenic 30.0%
!!! TTTTTTTTTGCTAGGGAACA+AGG - Chr5:19131991-19132010 None:intergenic 30.0%
AAATATCCTCATGCTATTGG+AGG + Chr5:19134125-19134144 MsG0580025464.01.T01:CDS 35.0%
AACAAGTGGGAAAAGGAAAT+AGG - Chr5:19134267-19134286 None:intergenic 35.0%
AACTGTTGATCTTACTGTGT+TGG + Chr5:19133410-19133429 MsG0580025464.01.T01:intron 35.0%
AAGAAAAAAGTAAGGGGGTA+TGG + Chr5:19132230-19132249 MsG0580025464.01.T01:intron 35.0%
ACAATGAAACAAGTGGGAAA+AGG - Chr5:19134274-19134293 None:intergenic 35.0%
ACCTACTTTACTCTTACTCA+AGG + Chr5:19132384-19132403 MsG0580025464.01.T01:intron 35.0%
ACTTGGTTACTTACTCTAAG+TGG - Chr5:19132015-19132034 None:intergenic 35.0%
AGAGCGATATTATGAGTCTT+TGG + Chr5:19133982-19134001 MsG0580025464.01.T01:CDS 35.0%
AGAGCTAGAGAAGCTTATAA+TGG + Chr5:19131518-19131537 MsG0580025464.01.T01:CDS 35.0%
AGCATGAGGATATTTGAAGA+TGG - Chr5:19134120-19134139 None:intergenic 35.0%
ATAATGAGAGGAAAGACAAC+AGG - Chr5:19131638-19131657 None:intergenic 35.0%
CAAACATTTGTATACTCCCT+AGG - Chr5:19132596-19132615 None:intergenic 35.0%
CAGAACAAAAGCAAATGCAA+TGG - Chr5:19134239-19134258 None:intergenic 35.0%
CATTCTTGAAGTGAAACAGT+AGG - Chr5:19131680-19131699 None:intergenic 35.0%
CCTACTTTACTCTTACTCAA+GGG + Chr5:19132385-19132404 MsG0580025464.01.T01:intron 35.0%
CTACTGTTTCACTTCAAGAA+TGG + Chr5:19131678-19131697 MsG0580025464.01.T01:CDS 35.0%
CTTGGTTACTTACTCTAAGT+GGG - Chr5:19132014-19132033 None:intergenic 35.0%
CTTTCTCTATATGGTATGCT+TGG + Chr5:19134525-19134544 MsG0580025464.01.T01:CDS 35.0%
GAGCGATATTATGAGTCTTT+GGG + Chr5:19133983-19134002 MsG0580025464.01.T01:CDS 35.0%
GCATGCAACAGTAGAAAAAA+AGG + Chr5:19134899-19134918 MsG0580025464.01.T01:three_prime_UTR 35.0%
GGTTTGTAACAAAGCCATAA+AGG - Chr5:19132367-19132386 None:intergenic 35.0%
GTTGAAGCTTCAAACGAAAA+TGG - Chr5:19130976-19130995 None:intergenic 35.0%
TCAGGGTTTGGATTCTATTA+CGG + Chr5:19134377-19134396 MsG0580025464.01.T01:CDS 35.0%
TGCAACAGTAGAAAAAAAGG+GGG + Chr5:19134902-19134921 MsG0580025464.01.T01:three_prime_UTR 35.0%
TGTGCTAGTGAATATAGTCA+TGG - Chr5:19131791-19131810 None:intergenic 35.0%
TTTCTTCATCCCAATGAAAG+AGG + Chr5:19131343-19131362 MsG0580025464.01.T01:exon 35.0%
! GCAAACTATAGTGGAACAAA+CGG - Chr5:19132326-19132345 None:intergenic 35.0%
! GCACAGTTTTTCATTAGACA+AGG + Chr5:19133855-19133874 MsG0580025464.01.T01:CDS 35.0%
! GGAAGATAAAGCATTCAAGT+TGG - Chr5:19130793-19130812 None:intergenic 35.0%
! GGGAGTATACAAATGTTTGT+CGG + Chr5:19132597-19132616 MsG0580025464.01.T01:intron 35.0%
!! AAGAAGGTGCTTTCTCTATA+TGG + Chr5:19134516-19134535 MsG0580025464.01.T01:CDS 35.0%
!! AGAGAGGATTTTGTTGTGTT+TGG - Chr5:19131231-19131250 None:intergenic 35.0%
!! AGATAAAGCATTCAAGTTGG+AGG - Chr5:19130790-19130809 None:intergenic 35.0%
!! AGTGGTTTAATTTGGCTTGT+TGG + Chr5:19134020-19134039 MsG0580025464.01.T01:CDS 35.0%
!! CAAAGTTTTCAGCATTGGAA+TGG + Chr5:19133559-19133578 MsG0580025464.01.T01:CDS 35.0%
!! CACAACAATGGCTATTTTCA+TGG + Chr5:19134175-19134194 MsG0580025464.01.T01:CDS 35.0%
!! CATTGCATTTGCTTTTGTTC+TGG + Chr5:19134237-19134256 MsG0580025464.01.T01:CDS 35.0%
!! GAGAGGATTTTGTTGTGTTT+GGG - Chr5:19131230-19131249 None:intergenic 35.0%
!! GTGGTTTAATTTGGCTTGTT+GGG + Chr5:19134021-19134040 MsG0580025464.01.T01:CDS 35.0%
!!! GGAATTGTTGTGTTGCTTTT+TGG + Chr5:19134647-19134666 MsG0580025464.01.T01:CDS 35.0%
!!! GGTTTTTTTGCTAGTGAACT+TGG - Chr5:19131901-19131920 None:intergenic 35.0%
!!! GTTGTGTTTGGGTTTTGTTT+AGG - Chr5:19131219-19131238 None:intergenic 35.0%
AAACCACTTTCATTACCCAC+CGG + Chr5:19132427-19132446 MsG0580025464.01.T01:intron 40.0%
AAAGATGACAGAGGAGTTTC+AGG - Chr5:19132628-19132647 None:intergenic 40.0%
AAGGAAAGGAAGCCAAGAAT+TGG - Chr5:19133624-19133643 None:intergenic 40.0%
ACATTTGTATACTCCCTAGG+AGG - Chr5:19132593-19132612 None:intergenic 40.0%
AGTGGTAAGGTAAGAGAAGA+AGG - Chr5:19131269-19131288 None:intergenic 40.0%
ATCTTCATTCCCTACATTGC+TGG + Chr5:19133741-19133760 MsG0580025464.01.T01:CDS 40.0%
CAACAGTAGAAAAAAAGGGG+GGG + Chr5:19134904-19134923 MsG0580025464.01.T01:three_prime_UTR 40.0%
CAACGGTTACCTCTTTCATT+GGG - Chr5:19131355-19131374 None:intergenic 40.0%
CATCGAGTTCGTGTATCATA+TGG - Chr5:19133956-19133975 None:intergenic 40.0%
CCATTGTTGTGAATGATGCA+AGG - Chr5:19134166-19134185 None:intergenic 40.0%
CCCTTGAGTAAGAGTAAAGT+AGG - Chr5:19132388-19132407 None:intergenic 40.0%
CCTTGCATCATTCACAACAA+TGG + Chr5:19134163-19134182 MsG0580025464.01.T01:CDS 40.0%
CGAAAATGAGATCGAATCAG+TGG - Chr5:19134078-19134097 None:intergenic 40.0%
CTTGAAGTGAAACAGTAGGT+GGG - Chr5:19131676-19131695 None:intergenic 40.0%
GAATCTAAACCAGAAACCAC+AGG - Chr5:19134740-19134759 None:intergenic 40.0%
GAATGGAACAAAACTCATCC+TGG + Chr5:19131695-19131714 MsG0580025464.01.T01:CDS 40.0%
GCAACAGTAGAAAAAAAGGG+GGG + Chr5:19134903-19134922 MsG0580025464.01.T01:three_prime_UTR 40.0%
GGAATGGACATCAATTGCTT+GGG + Chr5:19133575-19133594 MsG0580025464.01.T01:CDS 40.0%
GGTGTGACAAATCCAACATA+GGG + Chr5:19132251-19132270 MsG0580025464.01.T01:intron 40.0%
TAGTGTAGTGAGAGTGAGTA+GGG - Chr5:19131169-19131188 None:intergenic 40.0%
TCAACGGTTACCTCTTTCAT+TGG - Chr5:19131356-19131375 None:intergenic 40.0%
TCAGAATGAGTAATGGTGAG+AGG - Chr5:19131294-19131313 None:intergenic 40.0%
TCTTGAAGTGAAACAGTAGG+TGG - Chr5:19131677-19131696 None:intergenic 40.0%
TGCAGGTATAACAAACTCAC+TGG + Chr5:19133522-19133541 MsG0580025464.01.T01:intron 40.0%
TGCTTTCTTGAGAGTTGTTC+CGG - Chr5:19133838-19133857 None:intergenic 40.0%
TGGAATGGACATCAATTGCT+TGG + Chr5:19133574-19133593 MsG0580025464.01.T01:CDS 40.0%
TGGTGTGACAAATCCAACAT+AGG + Chr5:19132250-19132269 MsG0580025464.01.T01:intron 40.0%
TTGAAGTGAAACAGTAGGTG+GGG - Chr5:19131675-19131694 None:intergenic 40.0%
TTGTTGGACAGCTTTGCATT+AGG + Chr5:19134213-19134232 MsG0580025464.01.T01:CDS 40.0%
TTTGGAAACATCAGTGATGC+TGG + Chr5:19134665-19134684 MsG0580025464.01.T01:CDS 40.0%
! AATGTACTGGTGAATTGTGC+AGG + Chr5:19133505-19133524 MsG0580025464.01.T01:intron 40.0%
! ATGAAAAGGCGTGTCCTTTA+TGG + Chr5:19132350-19132369 MsG0580025464.01.T01:intron 40.0%
! ATTCGATCTCATTTTCGTCG+AGG + Chr5:19134081-19134100 MsG0580025464.01.T01:CDS 40.0%
! CAATGGTTGATATGGTACCA+AGG - Chr5:19132473-19132492 None:intergenic 40.0%
! CTGCAACTGTGATGAGTTTT+GGG - Chr5:19133665-19133684 None:intergenic 40.0%
! GGTGGTGTGATTTTCATTGT+TGG + Chr5:19134197-19134216 MsG0580025464.01.T01:CDS 40.0%
! TAGTAGTGGTTAGCCATGAA+TGG + Chr5:19132140-19132159 MsG0580025464.01.T01:intron 40.0%
! TGAAGCTGACTGATAATGAG+AGG - Chr5:19131650-19131669 None:intergenic 40.0%
! TTTTCTCGCTTCTGTCTTCA+GGG + Chr5:19134360-19134379 MsG0580025464.01.T01:CDS 40.0%
! TTTTTCTCGCTTCTGTCTTC+AGG + Chr5:19134359-19134378 MsG0580025464.01.T01:CDS 40.0%
!! ACAATGGCTATTTTCATGGG+TGG + Chr5:19134179-19134198 MsG0580025464.01.T01:CDS 40.0%
!! GATTTTGCACGCTTTTGGAA+GGG + Chr5:19134463-19134482 MsG0580025464.01.T01:CDS 40.0%
!! TGAATGGATTGAGGGATGAA+TGG + Chr5:19134820-19134839 MsG0580025464.01.T01:three_prime_UTR 40.0%
!! TGGGTTGTTTCGATTTTCAG+TGG + Chr5:19134002-19134021 MsG0580025464.01.T01:CDS 40.0%
AACCCTTCACACTCCATTCA+TGG - Chr5:19132156-19132175 None:intergenic 45.0%
ACAGCTCTGTTGTGTAAGTC+AGG - Chr5:19131488-19131507 None:intergenic 45.0%
ACATCAATTGCTTGGGCTAC+AGG + Chr5:19133582-19133601 MsG0580025464.01.T01:CDS 45.0%
AGCAGCGACAATGAAACAAG+TGG - Chr5:19134281-19134300 None:intergenic 45.0%
AGCCATGAATGGAGTGTGAA+GGG + Chr5:19132151-19132170 MsG0580025464.01.T01:intron 45.0%
ATCTTAACCACGCGCAGTAA+AGG - Chr5:19134308-19134327 None:intergenic 45.0%
CACTACTCCACTTGAGACTA+TGG + Chr5:19132717-19132736 MsG0580025464.01.T01:intron 45.0%
CCATTCAGAGCACATCAACA+GGG + Chr5:19134441-19134460 MsG0580025464.01.T01:CDS 45.0%
CGGCACTATACATTGTCGTT+AGG - Chr5:19133179-19133198 None:intergenic 45.0%
CTAGTGTAGTGAGAGTGAGT+AGG - Chr5:19131170-19131189 None:intergenic 45.0%
GCAGCGACAATGAAACAAGT+GGG - Chr5:19134280-19134299 None:intergenic 45.0%
GCAGCTTCAGAAGTTGCTAA+AGG + Chr5:19131440-19131459 MsG0580025464.01.T01:CDS 45.0%
GCTATGATGCCAGCAATGTA+GGG - Chr5:19133753-19133772 None:intergenic 45.0%
GCTGGATTCTTCAAAGTCAC+AGG + Chr5:19133717-19133736 MsG0580025464.01.T01:CDS 45.0%
GGTAAGGTAAGAGAAGAAGG+AGG - Chr5:19131266-19131285 None:intergenic 45.0%
GGTGTTAGATTGTGCTCCAT+CGG + Chr5:19134490-19134509 MsG0580025464.01.T01:CDS 45.0%
GTGTTAGATTGTGCTCCATC+GGG + Chr5:19134491-19134510 MsG0580025464.01.T01:CDS 45.0%
TAGCCATGAATGGAGTGTGA+AGG + Chr5:19132150-19132169 MsG0580025464.01.T01:intron 45.0%
TCGGACTCGAAATCTCAATC+CGG - Chr5:19131108-19131127 None:intergenic 45.0%
TCTATTACGGACACAGTCAC+TGG + Chr5:19134390-19134409 MsG0580025464.01.T01:CDS 45.0%
TGAATGGAGTGTGAAGGGTT+TGG + Chr5:19132156-19132175 MsG0580025464.01.T01:intron 45.0%
TGCTATGATGCCAGCAATGT+AGG - Chr5:19133754-19133773 None:intergenic 45.0%
! ACAGGGATTTTGCACGCTTT+TGG + Chr5:19134458-19134477 MsG0580025464.01.T01:CDS 45.0%
! AGGAGTTTTCTTCTGTCTCC+CGG + Chr5:19133695-19133714 MsG0580025464.01.T01:CDS 45.0%
! ATGGATTGAGGGATGAATGG+TGG + Chr5:19134823-19134842 MsG0580025464.01.T01:three_prime_UTR 45.0%
! GCTGCAACTGTGATGAGTTT+TGG - Chr5:19133666-19133685 None:intergenic 45.0%
! GCTTTTTGCACTGCTATTGC+TGG + Chr5:19134626-19134645 MsG0580025464.01.T01:CDS 45.0%
! GGATGTGTTTTCATCACCCA+CGG + Chr5:19131076-19131095 MsG0580025464.01.T01:five_prime_UTR 45.0%
! GGATTTTGCACGCTTTTGGA+AGG + Chr5:19134462-19134481 MsG0580025464.01.T01:CDS 45.0%
! GGTTCACAGTTGGTTCAGTT+GGG + Chr5:19134573-19134592 MsG0580025464.01.T01:CDS 45.0%
! GTGACTTTGAAGAATCCAGC+CGG - Chr5:19133717-19133736 None:intergenic 45.0%
! TAAGGCGGTTTCGGTTTGTA+CGG - Chr5:19131030-19131049 None:intergenic 45.0%
! TGACTTTGAAGAATCCAGCC+GGG - Chr5:19133716-19133735 None:intergenic 45.0%
! TTCGGTTTGTACGGTTCACA+CGG - Chr5:19131021-19131040 None:intergenic 45.0%
!! AAAGCACCTTCTTTTCCCGA+TGG - Chr5:19134509-19134528 None:intergenic 45.0%
!! AAATAGGGTTGATGTCCGGT+GGG - Chr5:19132445-19132464 None:intergenic 45.0%
!! TAAATAGGGTTGATGTCCGG+TGG - Chr5:19132446-19132465 None:intergenic 45.0%
!! AAAATATAAAAAAAATAATG+TGG - Chr5:19131757-19131776 None:intergenic 5.0%
AACGAAGTCCTAATCCGTCC+TGG - Chr5:19134599-19134618 None:intergenic 50.0%
ACAGTTGCAGCAACAGGTGT+AGG + Chr5:19133675-19133694 MsG0580025464.01.T01:CDS 50.0%
ACGGACACAGTCACTGGAAA+TGG + Chr5:19134396-19134415 MsG0580025464.01.T01:CDS 50.0%
AGAAGCTCTCCTGTGGTTTC+TGG + Chr5:19134728-19134747 MsG0580025464.01.T01:CDS 50.0%
AGAGCTGCAGGTTTGTGTGT+CGG + Chr5:19134551-19134570 MsG0580025464.01.T01:CDS 50.0%
AGCTGCATTAGCAACTGTGC+TGG - Chr5:19133778-19133797 None:intergenic 50.0%
AGTAGCATGAAGTGAGAGGC+GGG - Chr5:19133889-19133908 None:intergenic 50.0%
ATCCACGTTCGTCCGTTTCA+TGG - Chr5:19131060-19131079 None:intergenic 50.0%
ATGGTGAGAGGACAGTGGTA+AGG - Chr5:19131282-19131301 None:intergenic 50.0%
CAGCAGTAGCATGAAGTGAG+AGG - Chr5:19133893-19133912 None:intergenic 50.0%
CAGTAGCATGAAGTGAGAGG+CGG - Chr5:19133890-19133909 None:intergenic 50.0%
CCTTATCCGACGCCATGAAA+CGG + Chr5:19131045-19131064 MsG0580025464.01.T01:five_prime_UTR 50.0%
CGGACACAGTCACTGGAAAT+GGG + Chr5:19134397-19134416 MsG0580025464.01.T01:CDS 50.0%
CGGTGAAGATGCAGATCGTT+GGG + Chr5:19134333-19134352 MsG0580025464.01.T01:CDS 50.0%
CTCATCACAGTTGCAGCAAC+AGG + Chr5:19133669-19133688 MsG0580025464.01.T01:CDS 50.0%
CTTGAGAGTTGTTCCGGTGA+AGG - Chr5:19133832-19133851 None:intergenic 50.0%
GACACCACCTTCAGCTTCAA+CGG - Chr5:19131372-19131391 None:intergenic 50.0%
GAGGTAACCGTTGAAGCTGA+AGG + Chr5:19131362-19131381 MsG0580025464.01.T01:CDS 50.0%
GAGTAATGGTGAGAGGACAG+TGG - Chr5:19131287-19131306 None:intergenic 50.0%
GCAAGACCTCCAATAGCATG+AGG - Chr5:19134134-19134153 None:intergenic 50.0%
GCCAAGAATTGGTGCAGCTA+TGG - Chr5:19133613-19133632 None:intergenic 50.0%
GCCATAGCTGCACCAATTCT+TGG + Chr5:19133609-19133628 MsG0580025464.01.T01:CDS 50.0%
GCCATTCAGAGCACATCAAC+AGG + Chr5:19134440-19134459 MsG0580025464.01.T01:CDS 50.0%
GCGCGTGGTTAAGATGAACT+CGG + Chr5:19134313-19134332 MsG0580025464.01.T01:CDS 50.0%
GGAAACATCAGTGATGCTGG+TGG + Chr5:19134668-19134687 MsG0580025464.01.T01:CDS 50.0%
GGACACAGTCACTGGAAATG+GGG + Chr5:19134398-19134417 MsG0580025464.01.T01:CDS 50.0%
GTAACCGTTGAAGCTGAAGG+TGG + Chr5:19131365-19131384 MsG0580025464.01.T01:CDS 50.0%
GTAGTGAGAGTGAGTAGGGT+GGG - Chr5:19131165-19131184 None:intergenic 50.0%
TAACGAGAGAAGCTCTCCTG+TGG + Chr5:19134721-19134740 MsG0580025464.01.T01:CDS 50.0%
TAGTGAGAGTGAGTAGGGTG+GGG - Chr5:19131164-19131183 None:intergenic 50.0%
TATGCTTGGATGAGAGCTGC+AGG + Chr5:19134539-19134558 MsG0580025464.01.T01:CDS 50.0%
TCACTGGAAATGGGGACACT+TGG + Chr5:19134406-19134425 MsG0580025464.01.T01:CDS 50.0%
TCACTTCATGCTACTGCTGC+TGG + Chr5:19133894-19133913 MsG0580025464.01.T01:CDS 50.0%
TCGCTTCTGTCTTCAGGGTT+TGG + Chr5:19134365-19134384 MsG0580025464.01.T01:CDS 50.0%
TCGGTGAAGATGCAGATCGT+TGG + Chr5:19134332-19134351 MsG0580025464.01.T01:CDS 50.0%
TGATCTATGCTCGCCTCCTA+GGG + Chr5:19132577-19132596 MsG0580025464.01.T01:intron 50.0%
TGCAGATTGGAGGCAAACGA+AGG - Chr5:19130759-19130778 None:intergenic 50.0%
TGGCACTCACTGCTCTCAAA+AGG + Chr5:19131715-19131734 MsG0580025464.01.T01:CDS 50.0%
TGTAGTGAGAGTGAGTAGGG+TGG - Chr5:19131166-19131185 None:intergenic 50.0%
TGTCCGGTGGGTAATGAAAG+TGG - Chr5:19132433-19132452 None:intergenic 50.0%
TGTCGGCAGTTAGCACATCT+TGG + Chr5:19133140-19133159 MsG0580025464.01.T01:intron 50.0%
TGTGCTCCATCGGGAAAAGA+AGG + Chr5:19134500-19134519 MsG0580025464.01.T01:CDS 50.0%
TTCCTTTCCTTCCACCTCGA+CGG + Chr5:19133633-19133652 MsG0580025464.01.T01:CDS 50.0%
TTGTGTGTCGGGTTCACAGT+TGG + Chr5:19134563-19134582 MsG0580025464.01.T01:CDS 50.0%
! ATTTCGAGTCCGAAACCGAC+CGG + Chr5:19131115-19131134 MsG0580025464.01.T01:five_prime_UTR 50.0%
! CCCTGTTGATGTGCTCTGAA+TGG - Chr5:19134444-19134463 None:intergenic 50.0%
! GGGTTCACAGTTGGTTCAGT+TGG + Chr5:19134572-19134591 MsG0580025464.01.T01:CDS 50.0%
! GTTTTCATCACCCACGGTTG+TGG + Chr5:19131082-19131101 MsG0580025464.01.T01:five_prime_UTR 50.0%
! TCGGTTTGTACGGTTCACAC+GGG - Chr5:19131020-19131039 None:intergenic 50.0%
! TTTCATGGCGTCGGATAAGG+CGG - Chr5:19131045-19131064 None:intergenic 50.0%
!! GCACGCTTTTGGAAGGGTTT+TGG + Chr5:19134469-19134488 MsG0580025464.01.T01:CDS 50.0%
!! GCTACTGCTGCTGGTTGTTT+TGG + Chr5:19133903-19133922 MsG0580025464.01.T01:CDS 50.0%
!! GGACGGATTAGGACTTCGTT+TGG + Chr5:19134599-19134618 MsG0580025464.01.T01:CDS 50.0%
!! GGGGGTGTCAGAATGAGTAA+TGG - Chr5:19131301-19131320 None:intergenic 50.0%
!! TTTTGAGAGCAGTGAGTGCC+AGG - Chr5:19131716-19131735 None:intergenic 50.0%
!!! ACTGCTGCTGGTTGTTTTGG+CGG + Chr5:19133906-19133925 MsG0580025464.01.T01:CDS 50.0%
!!! GTTTTGGGAAATTGCCGTCG+AGG - Chr5:19133650-19133669 None:intergenic 50.0%
AGAGTGAGTAGGGTGGGGTA+GGG - Chr5:19131159-19131178 None:intergenic 55.0%
CACGGTCATGGTCATGGTCA+AGG + Chr5:19131410-19131429 MsG0580025464.01.T01:CDS 55.0%
CATGACCGTGTCCATGTCCA+TGG - Chr5:19131400-19131419 None:intergenic 55.0%
CATGGACACGGTCATGGTCA+TGG + Chr5:19131404-19131423 MsG0580025464.01.T01:CDS 55.0%
CATGGACATGGACACGGTCA+TGG + Chr5:19131398-19131417 MsG0580025464.01.T01:CDS 55.0%
CTTGGCCATGGACATGGACA+CGG + Chr5:19131392-19131411 MsG0580025464.01.T01:CDS 55.0%
GAAATTGCCGTCGAGGTGGA+AGG - Chr5:19133643-19133662 None:intergenic 55.0%
GAAGCTGAAGGTGGTGTCCT+TGG + Chr5:19131374-19131393 MsG0580025464.01.T01:CDS 55.0%
GAGCTGCAGGTTTGTGTGTC+GGG + Chr5:19134552-19134571 MsG0580025464.01.T01:CDS 55.0%
GCAGCTCACACACAGCATCT+CGG + Chr5:19133792-19133811 MsG0580025464.01.T01:CDS 55.0%
GCTACAACCTTTACTGCGCG+TGG + Chr5:19134298-19134317 MsG0580025464.01.T01:CDS 55.0%
GGACGACACATGCAGATTGG+AGG - Chr5:19130769-19130788 None:intergenic 55.0%
GGAGGACGACACATGCAGAT+TGG - Chr5:19130772-19130791 None:intergenic 55.0%
GGTCATGGTCATGGTCAAGG+TGG + Chr5:19131413-19131432 MsG0580025464.01.T01:CDS 55.0%
GTGATCTATGCTCGCCTCCT+AGG + Chr5:19132576-19132595 MsG0580025464.01.T01:intron 55.0%
GTTCGTCCGTTTCATGGCGT+CGG - Chr5:19131054-19131073 None:intergenic 55.0%
TTGGGAAATTGCCGTCGAGG+TGG - Chr5:19133647-19133666 None:intergenic 55.0%
TTGGTTCAGTTGGGCCAGGA+CGG + Chr5:19134582-19134601 MsG0580025464.01.T01:CDS 55.0%
! ACAGTTGGTTCAGTTGGGCC+AGG + Chr5:19134578-19134597 MsG0580025464.01.T01:CDS 55.0%
! CCGTTTCATGGCGTCGGATA+AGG - Chr5:19131048-19131067 None:intergenic 55.0%
! GAGGGATGAATGGTGGTGCA+TGG + Chr5:19134830-19134849 MsG0580025464.01.T01:three_prime_UTR 55.0%
! GTTTTCTTCTGTCTCCCGGC+TGG + Chr5:19133699-19133718 MsG0580025464.01.T01:CDS 55.0%
!! GGTGCACGGGTGGATTGAAA+CGG - Chr5:19130999-19131018 None:intergenic 55.0%
!! GTGCACGGGTGGATTGAAAC+GGG - Chr5:19130998-19131017 None:intergenic 55.0%
CGCCATGAAACGGACGAACG+TGG + Chr5:19131055-19131074 MsG0580025464.01.T01:five_prime_UTR 60.0%
CGTGTCCATGTCCATGGCCA+AGG - Chr5:19131394-19131413 None:intergenic 60.0%
CTCAATCCGGCCACAACCGT+GGG - Chr5:19131095-19131114 None:intergenic 60.0%
CTCATGATCCGCGCCTTCAC+CGG + Chr5:19133816-19133835 MsG0580025464.01.T01:CDS 60.0%
GAAGGTGGTGTCCTTGGCCA+TGG + Chr5:19131380-19131399 MsG0580025464.01.T01:CDS 60.0%
GACAATCGGTCGGAACCGGT+CGG - Chr5:19131133-19131152 None:intergenic 60.0%
GAGAGTGAGTAGGGTGGGGT+AGG - Chr5:19131160-19131179 None:intergenic 60.0%
GAGTGAGTAGGGTGGGGTAG+GGG - Chr5:19131158-19131177 None:intergenic 60.0%
GAGTTGTTCCGGTGAAGGCG+CGG - Chr5:19133827-19133846 None:intergenic 60.0%
GGTAGGGGTGGACAATCGGT+CGG - Chr5:19131143-19131162 None:intergenic 60.0%
GGTGGACAATCGGTCGGAAC+CGG - Chr5:19131137-19131156 None:intergenic 60.0%
GGTGTCCTTGGCCATGGACA+TGG + Chr5:19131386-19131405 MsG0580025464.01.T01:CDS 60.0%
GTACGGTTCACACGGGTGCA+CGG - Chr5:19131013-19131032 None:intergenic 60.0%
GTGGGGTAGGGGTGGACAAT+CGG - Chr5:19131147-19131166 None:intergenic 60.0%
TACGGTTCACACGGGTGCAC+GGG - Chr5:19131012-19131031 None:intergenic 60.0%
TCATCACCCACGGTTGTGGC+CGG + Chr5:19131086-19131105 MsG0580025464.01.T01:five_prime_UTR 60.0%
TCTCAATCCGGCCACAACCG+TGG - Chr5:19131096-19131115 None:intergenic 60.0%
TGCCGTCGAGGTGGAAGGAA+AGG - Chr5:19133638-19133657 None:intergenic 60.0%
! CAGTTGGGCCAGGACGGATT+AGG + Chr5:19134588-19134607 MsG0580025464.01.T01:CDS 60.0%
! GGCGTCGGATAAGGCGGTTT+CGG - Chr5:19131039-19131058 None:intergenic 60.0%
!! CTGGTGGTGCTGTTGCTGCA+GGG + Chr5:19134684-19134703 MsG0580025464.01.T01:CDS 60.0%
TGAGTAGGGTGGGGTAGGGG+TGG - Chr5:19131155-19131174 None:intergenic 65.0%
! CGGTCGGAACCGGTCGGTTT+CGG - Chr5:19131127-19131146 None:intergenic 65.0%
! CGGTGAAGGCGCGGATCATG+AGG - Chr5:19133818-19133837 None:intergenic 65.0%
!! GCTGGTGGTGCTGTTGCTGC+AGG + Chr5:19134683-19134702 MsG0580025464.01.T01:CDS 65.0%
GGTTCACACGGGTGCACGGG+TGG - Chr5:19131009-19131028 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 19130720 19135110 19130720 ID=MsG0580025464.01;Name=MsG0580025464.01
Chr5 mRNA 19130720 19135110 19130720 ID=MsG0580025464.01.T01;Parent=MsG0580025464.01;Name=MsG0580025464.01.T01;_AED=0.49;_eAED=0.49;_QI=636|1|1|1|1|1|2|329|548
Chr5 exon 19130720 19131747 19130720 ID=MsG0580025464.01.T01:exon:29683;Parent=MsG0580025464.01.T01
Chr5 exon 19133527 19135110 19133527 ID=MsG0580025464.01.T01:exon:29684;Parent=MsG0580025464.01.T01
Chr5 five_prime_UTR 19130720 19131355 19130720 ID=MsG0580025464.01.T01:five_prime_utr;Parent=MsG0580025464.01.T01
Chr5 CDS 19131356 19131747 19131356 ID=MsG0580025464.01.T01:cds;Parent=MsG0580025464.01.T01
Chr5 CDS 19133527 19134781 19133527 ID=MsG0580025464.01.T01:cds;Parent=MsG0580025464.01.T01
Chr5 three_prime_UTR 19134782 19135110 19134782 ID=MsG0580025464.01.T01:three_prime_utr;Parent=MsG0580025464.01.T01
Gene Sequence

>MsG0580025464.01.T01

ATGAAAGAGGTAACCGTTGAAGCTGAAGGTGGTGTCCTTGGCCATGGACATGGACACGGTCATGGTCATGGTCAAGGTGGTGTAGCAGCTTCAGAAGTTGCTAAAGGTAACAACAACAATACTACTAGACCTGACTTACACAACAGAGCTGTGAAAATTTTGAGAGCTAGAGAAGCTTATAATGGTTATGAAGAAGTTGGTGAAAAACCTTCTAGATTTGAAACTTTTGGTTGGTATCTTTATGAGTTTTGCTTCTACTTTGTTCAAACTGTACTTGTTCCTGTTGTCTTTCCTCTCATTATCAGTCAGCTTCAAACCCCACCTACTGTTTCACTTCAAGAATGGAACAAAACTCATCCTGGCACTCACTGCTCTCAAAAGGAATTTCATTTGTATAACAAACTCACTGGACACACCATAAGTTCAAAGTTTTCAGCATTGGAATGGACATCAATTGCTTGGGCTACAGGTCTAGCCATAGCTGCACCAATTCTTGGCTTCCTTTCCTTCCACCTCGACGGCAATTTCCCAAAACTCATCACAGTTGCAGCAACAGGTGTAGGAGTTTTCTTCTGTCTCCCGGCTGGATTCTTCAAAGTCACAGGCATCTTCATTCCCTACATTGCTGGCATCATAGCAGCCAGCACAGTTGCTAATGCAGCTCACACACAGCATCTCGGCCTCATGATCCGCGCCTTCACCGGAACAACTCTCAAGAAAGCACAGTTTTTCATTAGACAAGGTGTTTCATCCCGCCTCTCACTTCATGCTACTGCTGCTGGTTGTTTTGGCGGTGCTTTGATTTCAGCTTTCACTTACCATATGATACACGAACTCGATGAAAATAAGAGCGATATTATGAGTCTTTGGGTTGTTTCGATTTTCAGTGGTTTAATTTGGCTTGTTGGGATCTTGCATTTAGCTACAGCTACAAGTAGAACCACTGATTCGATCTCATTTTCGTCGAGGCTACACCCTTTTTCCATCTTCAAATATCCTCATGCTATTGGAGGTCTTGCTAGTGTTTTCCTTGCATCATTCACAACAATGGCTATTTTCATGGGTGGTGTGATTTTCATTGTTGGACAGCTTTGCATTAGGCCATTGCATTTGCTTTTGTTCTGGTTAACCTATTTCCTTTTCCCACTTGTTTCATTGTCGCTGCTACAACCTTTACTGCGCGTGGTTAAGATGAACTCGGTGAAGATGCAGATCGTTGGGTTCTTTTTCTCGCTTCTGTCTTCAGGGTTTGGATTCTATTACGGACACAGTCACTGGAAATGGGGACACTTGGTTCTTTTCGCTGCCATTCAGAGCACATCAACAGGGATTTTGCACGCTTTTGGAAGGGTTTTGGTGTTAGATTGTGCTCCATCGGGAAAAGAAGGTGCTTTCTCTATATGGTATGCTTGGATGAGAGCTGCAGGTTTGTGTGTCGGGTTCACAGTTGGTTCAGTTGGGCCAGGACGGATTAGGACTTCGTTTGGAGTTGCTTTTTGCACTGCTATTGCTGGAATTGTTGTGTTGCTTTTTGGAAACATCAGTGATGCTGGTGGTGCTGTTGCTGCAGGGAATGTAAGTGACGATAACGAGAGAAGCTCTCCTGTGGTTTCTGGTTTAGATTCGAAAGAAGCTGCTCGAGTTTGA

Protein sequence

>MsG0580025464.01.T01

MKEVTVEAEGGVLGHGHGHGHGHGQGGVAASEVAKGNNNNTTRPDLHNRAVKILRAREAYNGYEEVGEKPSRFETFGWYLYEFCFYFVQTVLVPVVFPLIISQLQTPPTVSLQEWNKTHPGTHCSQKEFHLYNKLTGHTISSKFSALEWTSIAWATGLAIAAPILGFLSFHLDGNFPKLITVAATGVGVFFCLPAGFFKVTGIFIPYIAGIIAASTVANAAHTQHLGLMIRAFTGTTLKKAQFFIRQGVSSRLSLHATAAGCFGGALISAFTYHMIHELDENKSDIMSLWVVSIFSGLIWLVGILHLATATSRTTDSISFSSRLHPFSIFKYPHAIGGLASVFLASFTTMAIFMGGVIFIVGQLCIRPLHLLLFWLTYFLFPLVSLSLLQPLLRVVKMNSVKMQIVGFFFSLLSSGFGFYYGHSHWKWGHLVLFAAIQSTSTGILHAFGRVLVLDCAPSGKEGAFSIWYAWMRAAGLCVGFTVGSVGPGRIRTSFGVAFCTAIAGIVVLLFGNISDAGGAVAAGNVSDDNERSSPVVSGLDSKEAARV*