AlfalfaGEDB | MsG0180002183.01

M. sativa cultivar ZhongmuNo.1 / MsG0180002183.01

KEGG: -
GO: -
PFAM: PF03478

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002183.01.T01	XP_013467319.2	88.584	219	25	0	1	219	185	403	4.69E-142	412

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002183.01.T01	Q3EBZ2	34.322	236	128	7	1	212	158	390	7.62E-27	109

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002183.01.T01	A0A396JQA8	88.584	219	25	0	1	219	185	403	2.24e-142	412

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000550.01	MsG0180002183.01	0.815879	7.372887e-52	5.144838e-49
MsG0180000673.01	MsG0180002183.01	0.801209	1.003057e-48	4.762687e-46
MsG0180001663.01	MsG0180002183.01	0.802346	5.859639e-49	2.863731e-46
MsG0180002183.01	MsG0180002524.01	0.832557	8.834369e-56	9.909560e-53
MsG0180002183.01	MsG0180002912.01	0.810463	1.138164e-50	6.865246e-48
MsG0180002183.01	MsG0180004388.01	0.814131	1.800892e-51	1.198370e-48
MsG0180002183.01	MsG0180006016.01	0.820369	7.113390e-53	5.617823e-50
MsG0180002183.01	MsG0280006356.01	0.833149	6.296509e-56	7.189074e-53
MsG0180002183.01	MsG0280010389.01	0.815060	1.121540e-51	7.652723e-49
MsG0180002183.01	MsG0280010614.01	0.817456	3.267742e-52	2.380966e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002183.01.T01	MTR_1g049170	88.584	219	25	0	1	219	172	390	6.24e-146	412
MsG0180002183.01.T01	MTR_3g092000	70.455	220	61	3	1	218	187	404	9.85e-105	308
MsG0180002183.01.T01	MTR_3g091990	63.256	215	73	3	3	214	176	387	2.51e-93	279
MsG0180002183.01.T01	MTR_2g047180	52.055	219	89	6	3	214	158	367	1.43e-67	212
MsG0180002183.01.T01	MTR_3g030080	51.376	218	92	7	3	214	164	373	5.63e-65	205
MsG0180002183.01.T01	MTR_3g029650	53.636	220	95	6	5	219	150	367	1.63e-63	210
MsG0180002183.01.T01	MTR_3g029650	42.478	226	113	7	1	215	533	752	1.70e-42	152
MsG0180002183.01.T01	MTR_1g016540	56.593	182	65	6	45	214	1	180	1.92e-58	182
MsG0180002183.01.T01	MTR_3g030480	50.691	217	89	7	1	214	154	355	2.28e-58	188
MsG0180002183.01.T01	MTR_3g030440	50.691	217	89	7	1	214	155	356	2.81e-58	187

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002183.01.T01	AT2G17030	34.322	236	128	7	1	212	158	390	7.77e-28	109
MsG0180002183.01.T01	AT2G17036	32.627	236	125	12	1	212	159	384	2.92e-22	94.0
MsG0180002183.01.T01	AT2G17036	32.627	236	125	12	1	212	158	383	3.02e-22	94.0
MsG0180002183.01.T01	AT5G24040	24.299	214	150	7	9	213	75	285	5.98e-13	66.6
MsG0180002183.01.T01	AT5G24040	24.299	214	150	7	9	213	160	370	1.49e-12	66.2
MsG0180002183.01.T01	AT5G24040	23.529	187	133	5	36	213	28	213	5.86e-11	60.5

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Find 46 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACGACACAATTCCCTT+TGG	0.513520	1:+34390443	None:intergenic
AAATTCCTTGTAGAGTGTGA+AGG	0.674175	1:-34390654	MsG0180002183.01.T01:CDS
AATCAGACAAAGGGATAAGC+CGG	0.556570	1:+34390352	None:intergenic
AATGGAAGTCGAAGAGCTTA+AGG	0.422589	1:-34390530	MsG0180002183.01.T01:CDS
ACAACACTGGATGACCGTTT+TGG	0.357465	1:+34390850	None:intergenic
ACTCACCTTCACACTCTACA+AGG	0.545195	1:+34390649	None:intergenic
AGAAAATACGTTGACATGCA+TGG	0.496549	1:+34390795	None:intergenic
AGTCAGGATAATCAGACAAA+GGG	0.533962	1:+34390343	None:intergenic
ATAGTCCAATCCAAACGCAA+CGG	0.688094	1:+34390719	None:intergenic
ATATCTGCGCGTTTAAAGAG+CGG	0.622196	1:-34390770	MsG0180002183.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAAAAAACTGTTGCTCT+CGG	-	Chr1:34390323-34390342	MsG0180002183.01.T01:CDS	30.0%
TAAGCTTAATGAGAAGAAGA+AGG	-	Chr1:34390652-34390671	MsG0180002183.01.T01:CDS	30.0%
TTAATGAGAAGAAGAAGGAA+TGG	-	Chr1:34390657-34390676	MsG0180002183.01.T01:CDS	30.0%
AAATTCCTTGTAGAGTGTGA+AGG	-	Chr1:34390551-34390570	MsG0180002183.01.T01:CDS	35.0%
ACAAAAAAACTGTTGCTCTC+GGG	-	Chr1:34390324-34390343	MsG0180002183.01.T01:CDS	35.0%
AGAAAATACGTTGACATGCA+TGG	+	Chr1:34390413-34390432	None:intergenic	35.0%
AGTCAGGATAATCAGACAAA+GGG	+	Chr1:34390865-34390884	None:intergenic	35.0%
CACATCGCATGTTATCAAAA+GGG	+	Chr1:34390805-34390824	None:intergenic	35.0%
CAGATTTGTCTATTGCCAAA+GGG	-	Chr1:34390747-34390766	MsG0180002183.01.T01:CDS	35.0%
GAAAATACGTTGACATGCAT+GGG	+	Chr1:34390412-34390431	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	34390284	34390943	34390284	ID=MsG0180002183.01;Name=MsG0180002183.01
Chr1	mRNA	34390284	34390943	34390284	ID=MsG0180002183.01.T01;Parent=MsG0180002183.01;Name=MsG0180002183.01.T01;_AED=0.39;_eAED=0.39;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|219
Chr1	exon	34390284	34390943	34390284	ID=MsG0180002183.01.T01:exon:36184;Parent=MsG0180002183.01.T01
Chr1	CDS	34390284	34390943	34390284	ID=MsG0180002183.01.T01:cds;Parent=MsG0180002183.01.T01

Gene Sequence

>MsG0180002183.01.T01

ATGGGAAAAAAGGTAGTTGCTATTATGCAACGTGGGAAAAACAAAAAAACTGTTGCTCTCGGGACATTGAACCAAAACGGTCATCCAGTGTTGTTTCACTGCAGCGAAGAGCGTTGGACGTTGATCCCATGCATGTCAACGTATTTTCTAGATATCTGCGCGTTTAAAGAGCGGTTTTATGCAGTTAATAAAATTGGTAGGACCGTTGCGTTTGGATTGGACTATAGTGTCGAGTTAGTGGCTGAACATGTGAATGGAGGGGACATGAAATTCCTTGTAGAGTGTGAAGGTGAGTTGTTGCTAGTGGACATCTATGACTCCCATTGTTTTGGGTTCCCTAGCAAAGAGGGTCTAAAACTGAAGGTGTTTAAGCTTAATGAGAAGAAGAAGGAATGGAAGTCGAAGAGCTTAAGGGATAAGGTTTTGTTCTTGGGAAATGGATGTTCGTTTACTGCTTCTGCTTCAGATTTGTCTATTGCCAAAGGGAATTGTGTCGTCTTTATTGACGATGCATTCATCCCTTTTGATAACATGCGATGTGGGATGTGTGTTTTTCATTTGGACGAACACCGGCTTATCCCTTTGTCTGATTATCCTGACTACTTCAACTTCTTCTGGCCACCTCCGGAGTGGATTCTCGAAATGCAATACCATTCATAA

Protein sequence

>MsG0180002183.01.T01

MGKKVVAIMQRGKNKKTVALGTLNQNGHPVLFHCSEERWTLIPCMSTYFLDICAFKERFYAVNKIGRTVAFGLDYSVELVAEHVNGGDMKFLVECEGELLLVDIYDSHCFGFPSKEGLKLKVFKLNEKKKEWKSKSLRDKVLFLGNGCSFTASASDLSIAKGNCVVFIDDAFIPFDNMRCGMCVFHLDEHRLIPLSDYPDYFNFFWPPPEWILEMQYHS*