Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002183.01.T01 | XP_013467319.2 | 88.584 | 219 | 25 | 0 | 1 | 219 | 185 | 403 | 4.69E-142 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002183.01.T01 | Q3EBZ2 | 34.322 | 236 | 128 | 7 | 1 | 212 | 158 | 390 | 7.62E-27 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002183.01.T01 | A0A396JQA8 | 88.584 | 219 | 25 | 0 | 1 | 219 | 185 | 403 | 2.24e-142 | 412 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000550.01 | MsG0180002183.01 | 0.815879 | 7.372887e-52 | 5.144838e-49 |
| MsG0180000673.01 | MsG0180002183.01 | 0.801209 | 1.003057e-48 | 4.762687e-46 |
| MsG0180001663.01 | MsG0180002183.01 | 0.802346 | 5.859639e-49 | 2.863731e-46 |
| MsG0180002183.01 | MsG0180002524.01 | 0.832557 | 8.834369e-56 | 9.909560e-53 |
| MsG0180002183.01 | MsG0180002912.01 | 0.810463 | 1.138164e-50 | 6.865246e-48 |
| MsG0180002183.01 | MsG0180004388.01 | 0.814131 | 1.800892e-51 | 1.198370e-48 |
| MsG0180002183.01 | MsG0180006016.01 | 0.820369 | 7.113390e-53 | 5.617823e-50 |
| MsG0180002183.01 | MsG0280006356.01 | 0.833149 | 6.296509e-56 | 7.189074e-53 |
| MsG0180002183.01 | MsG0280010389.01 | 0.815060 | 1.121540e-51 | 7.652723e-49 |
| MsG0180002183.01 | MsG0280010614.01 | 0.817456 | 3.267742e-52 | 2.380966e-49 |
| MsG0180002183.01 | MsG0280010784.01 | 0.803424 | 3.509412e-49 | 1.762931e-46 |
| MsG0180002183.01 | MsG0280011235.01 | 0.805277 | 1.442883e-49 | 7.601810e-47 |
| MsG0180002183.01 | MsG0280011446.01 | 0.807597 | 4.676337e-50 | 2.615293e-47 |
| MsG0180002183.01 | MsG0380014573.01 | 0.803931 | 2.754452e-49 | 1.401931e-46 |
| MsG0180002183.01 | MsG0380014770.01 | 0.803532 | 3.333537e-49 | 1.679292e-46 |
| MsG0180002183.01 | MsG0380016581.01 | 0.802282 | 6.040853e-49 | 2.947479e-46 |
| MsG0180002183.01 | MsG0380016859.01 | 0.802261 | 6.102526e-49 | 2.975846e-46 |
| MsG0180002183.01 | MsG0380017286.01 | 0.831778 | 1.376102e-55 | 1.508730e-52 |
| MsG0180002183.01 | MsG0380017680.01 | 0.804509 | 2.088007e-49 | 1.078506e-46 |
| MsG0180002183.01 | MsG0380018009.01 | 0.800694 | 1.277906e-48 | 5.988948e-46 |
| MsG0180002183.01 | MsG0480018635.01 | 0.806169 | 9.374659e-50 | 5.053677e-47 |
| MsG0180002183.01 | MsG0480018970.01 | 0.836782 | 7.646885e-57 | 9.737452e-54 |
| MsG0180002183.01 | MsG0480020445.01 | 0.823419 | 1.399697e-53 | 1.204425e-50 |
| MsG0180002183.01 | MsG0480022480.01 | 0.833777 | 4.388267e-56 | 5.105375e-53 |
| MsG0180002183.01 | MsG0480022482.01 | 0.822037 | 2.935406e-53 | 2.428808e-50 |
| MsG0180002183.01 | MsG0480023224.01 | 0.800765 | 1.235998e-48 | 5.802929e-46 |
| MsG0180002183.01 | MsG0480023427.01 | 0.801895 | 7.255919e-49 | 3.505616e-46 |
| MsG0180002183.01 | MsG0480023707.01 | 0.803324 | 3.681077e-49 | 1.844346e-46 |
| MsG0180002183.01 | MsG0580024073.01 | 0.825657 | 4.158962e-54 | 3.814666e-51 |
| MsG0180002183.01 | MsG0580024114.01 | 0.811577 | 6.532186e-51 | 4.058234e-48 |
| MsG0180002183.01 | MsG0580027129.01 | 0.815327 | 9.785115e-52 | 6.725859e-49 |
| MsG0180002183.01 | MsG0680030656.01 | 0.817041 | 4.050133e-52 | 2.917683e-49 |
| MsG0180002183.01 | MsG0680034450.01 | 0.817934 | 2.548200e-52 | 1.881161e-49 |
| MsG0180002183.01 | MsG0780038495.01 | 0.839898 | 1.202792e-57 | 1.684811e-54 |
| MsG0180002183.01 | MsG0780040442.01 | 0.839366 | 1.654320e-57 | 2.279522e-54 |
| MsG0180002183.01 | MsG0880043292.01 | 0.808507 | 2.993288e-50 | 1.714608e-47 |
| MsG0180002183.01 | MsG0880046753.01 | 0.812986 | 3.216629e-51 | 2.074931e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002183.01.T01 | MTR_1g049170 | 88.584 | 219 | 25 | 0 | 1 | 219 | 172 | 390 | 6.24e-146 | 412 |
| MsG0180002183.01.T01 | MTR_3g092000 | 70.455 | 220 | 61 | 3 | 1 | 218 | 187 | 404 | 9.85e-105 | 308 |
| MsG0180002183.01.T01 | MTR_3g091990 | 63.256 | 215 | 73 | 3 | 3 | 214 | 176 | 387 | 2.51e-93 | 279 |
| MsG0180002183.01.T01 | MTR_2g047180 | 52.055 | 219 | 89 | 6 | 3 | 214 | 158 | 367 | 1.43e-67 | 212 |
| MsG0180002183.01.T01 | MTR_3g030080 | 51.376 | 218 | 92 | 7 | 3 | 214 | 164 | 373 | 5.63e-65 | 205 |
| MsG0180002183.01.T01 | MTR_3g029650 | 53.636 | 220 | 95 | 6 | 5 | 219 | 150 | 367 | 1.63e-63 | 210 |
| MsG0180002183.01.T01 | MTR_3g029650 | 42.478 | 226 | 113 | 7 | 1 | 215 | 533 | 752 | 1.70e-42 | 152 |
| MsG0180002183.01.T01 | MTR_1g016540 | 56.593 | 182 | 65 | 6 | 45 | 214 | 1 | 180 | 1.92e-58 | 182 |
| MsG0180002183.01.T01 | MTR_3g030480 | 50.691 | 217 | 89 | 7 | 1 | 214 | 154 | 355 | 2.28e-58 | 188 |
| MsG0180002183.01.T01 | MTR_3g030440 | 50.691 | 217 | 89 | 7 | 1 | 214 | 155 | 356 | 2.81e-58 | 187 |
| MsG0180002183.01.T01 | MTR_6g018315 | 50.909 | 220 | 95 | 7 | 3 | 212 | 149 | 365 | 8.17e-58 | 187 |
| MsG0180002183.01.T01 | MTR_6g018360 | 50.909 | 220 | 95 | 7 | 3 | 212 | 164 | 380 | 1.41e-57 | 187 |
| MsG0180002183.01.T01 | MTR_3g030380 | 48.848 | 217 | 94 | 6 | 1 | 214 | 156 | 358 | 2.14e-56 | 183 |
| MsG0180002183.01.T01 | MTR_3g030050 | 43.028 | 251 | 103 | 4 | 1 | 212 | 171 | 420 | 3.74e-55 | 181 |
| MsG0180002183.01.T01 | MTR_3g030360 | 47.907 | 215 | 77 | 7 | 3 | 214 | 170 | 352 | 1.74e-54 | 178 |
| MsG0180002183.01.T01 | MTR_6g018390 | 48.341 | 211 | 97 | 6 | 4 | 212 | 165 | 365 | 2.77e-52 | 172 |
| MsG0180002183.01.T01 | MTR_1g016570 | 46.759 | 216 | 94 | 6 | 3 | 214 | 163 | 361 | 3.48e-52 | 172 |
| MsG0180002183.01.T01 | MTR_3g029640 | 45.370 | 216 | 107 | 6 | 5 | 216 | 159 | 367 | 7.31e-52 | 171 |
| MsG0180002183.01.T01 | MTR_3g029750 | 46.818 | 220 | 100 | 7 | 3 | 215 | 179 | 388 | 4.88e-51 | 170 |
| MsG0180002183.01.T01 | MTR_6g018400 | 47.418 | 213 | 99 | 6 | 3 | 212 | 166 | 368 | 5.13e-51 | 169 |
| MsG0180002183.01.T01 | MTR_3g037710 | 42.723 | 213 | 108 | 2 | 14 | 212 | 50 | 262 | 1.15e-50 | 166 |
| MsG0180002183.01.T01 | MTR_1g026850 | 46.047 | 215 | 108 | 5 | 4 | 213 | 153 | 364 | 4.10e-50 | 167 |
| MsG0180002183.01.T01 | MTR_3g029620 | 44.954 | 218 | 106 | 6 | 6 | 215 | 164 | 375 | 7.55e-50 | 166 |
| MsG0180002183.01.T01 | MTR_3g029670 | 46.364 | 220 | 101 | 7 | 3 | 215 | 179 | 388 | 1.21e-49 | 166 |
| MsG0180002183.01.T01 | MTR_3g030355 | 44.889 | 225 | 109 | 6 | 3 | 215 | 175 | 396 | 2.49e-49 | 166 |
| MsG0180002183.01.T01 | MTR_6g027100 | 45.833 | 216 | 99 | 7 | 3 | 212 | 172 | 375 | 3.86e-49 | 166 |
| MsG0180002183.01.T01 | MTR_1g007260 | 46.445 | 211 | 99 | 8 | 4 | 208 | 181 | 383 | 1.04e-48 | 164 |
| MsG0180002183.01.T01 | MTR_6g027040 | 45.833 | 216 | 99 | 7 | 3 | 212 | 172 | 375 | 3.08e-48 | 162 |
| MsG0180002183.01.T01 | MTR_3g030560 | 42.601 | 223 | 114 | 6 | 2 | 218 | 164 | 378 | 4.64e-47 | 159 |
| MsG0180002183.01.T01 | MTR_3g029920 | 43.290 | 231 | 105 | 12 | 1 | 218 | 167 | 384 | 3.33e-44 | 152 |
| MsG0180002183.01.T01 | MTR_3g029900 | 45.024 | 211 | 99 | 5 | 3 | 212 | 263 | 457 | 3.78e-44 | 154 |
| MsG0180002183.01.T01 | MTR_3g058460 | 42.308 | 208 | 107 | 5 | 17 | 212 | 169 | 375 | 1.68e-43 | 150 |
| MsG0180002183.01.T01 | MTR_3g047980 | 42.512 | 207 | 91 | 6 | 12 | 212 | 175 | 359 | 4.96e-43 | 149 |
| MsG0180002183.01.T01 | MTR_3g029800 | 40.758 | 211 | 108 | 5 | 13 | 216 | 159 | 359 | 6.75e-43 | 148 |
| MsG0180002183.01.T01 | MTR_1g007250 | 50.000 | 166 | 72 | 6 | 45 | 205 | 1 | 160 | 2.66e-41 | 138 |
| MsG0180002183.01.T01 | MTR_3g029840 | 44.601 | 213 | 98 | 6 | 3 | 214 | 163 | 356 | 3.97e-41 | 143 |
| MsG0180002183.01.T01 | MTR_3g029820 | 45.556 | 180 | 76 | 8 | 49 | 218 | 165 | 332 | 3.07e-40 | 140 |
| MsG0180002183.01.T01 | MTR_5g078450 | 53.623 | 138 | 42 | 3 | 79 | 214 | 2 | 119 | 1.22e-39 | 132 |
| MsG0180002183.01.T01 | MTR_5g042230 | 46.591 | 176 | 89 | 4 | 31 | 201 | 13 | 188 | 5.12e-39 | 134 |
| MsG0180002183.01.T01 | MTR_3g029950 | 43.750 | 224 | 96 | 8 | 3 | 214 | 163 | 368 | 1.22e-38 | 137 |
| MsG0180002183.01.T01 | MTR_8g035995 | 68.132 | 91 | 28 | 1 | 55 | 144 | 2 | 92 | 1.06e-34 | 121 |
| MsG0180002183.01.T01 | MTR_6g018370 | 44.304 | 158 | 83 | 3 | 1 | 153 | 102 | 259 | 2.04e-34 | 123 |
| MsG0180002183.01.T01 | MTR_1g007220 | 38.660 | 194 | 87 | 5 | 15 | 205 | 3 | 167 | 1.43e-33 | 119 |
| MsG0180002183.01.T01 | MTR_4g022880 | 48.120 | 133 | 62 | 3 | 87 | 212 | 39 | 171 | 1.19e-32 | 117 |
| MsG0180002183.01.T01 | MTR_7g005990 | 39.336 | 211 | 97 | 6 | 13 | 215 | 172 | 359 | 3.25e-31 | 117 |
| MsG0180002183.01.T01 | MTR_3g029870 | 45.562 | 169 | 65 | 6 | 58 | 214 | 182 | 335 | 7.98e-29 | 110 |
| MsG0180002183.01.T01 | MTR_1g007200 | 46.154 | 104 | 42 | 6 | 99 | 198 | 1 | 94 | 5.87e-16 | 71.6 |
| MsG0180002183.01.T01 | MTR_3g029850 | 39.744 | 78 | 44 | 2 | 135 | 212 | 42 | 116 | 1.82e-13 | 65.1 |
| MsG0180002183.01.T01 | MTR_8g074610 | 28.571 | 203 | 119 | 8 | 25 | 212 | 204 | 395 | 2.72e-13 | 68.6 |
| MsG0180002183.01.T01 | MTR_7g012990 | 48.052 | 77 | 36 | 3 | 36 | 110 | 79 | 153 | 2.55e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002183.01.T01 | AT2G17030 | 34.322 | 236 | 128 | 7 | 1 | 212 | 158 | 390 | 7.77e-28 | 109 |
| MsG0180002183.01.T01 | AT2G17036 | 32.627 | 236 | 125 | 12 | 1 | 212 | 159 | 384 | 2.92e-22 | 94.0 |
| MsG0180002183.01.T01 | AT2G17036 | 32.627 | 236 | 125 | 12 | 1 | 212 | 158 | 383 | 3.02e-22 | 94.0 |
| MsG0180002183.01.T01 | AT5G24040 | 24.299 | 214 | 150 | 7 | 9 | 213 | 75 | 285 | 5.98e-13 | 66.6 |
| MsG0180002183.01.T01 | AT5G24040 | 24.299 | 214 | 150 | 7 | 9 | 213 | 160 | 370 | 1.49e-12 | 66.2 |
| MsG0180002183.01.T01 | AT5G24040 | 23.529 | 187 | 133 | 5 | 36 | 213 | 28 | 213 | 5.86e-11 | 60.5 |
Find 46 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTATGACTCCCATTGTTT+TGG | 0.184600 | 1:-34390612 | MsG0180002183.01.T01:CDS |
| CTGACTACTTCAACTTCTTC+TGG | 0.327644 | 1:-34390326 | MsG0180002183.01.T01:CDS |
| ACAACACTGGATGACCGTTT+TGG | 0.357465 | 1:+34390850 | None:intergenic |
| GTCGAAGAGCTTAAGGGATA+AGG | 0.404239 | 1:-34390523 | MsG0180002183.01.T01:CDS |
| ATTGGTAGGACCGTTGCGTT+TGG | 0.412281 | 1:-34390729 | MsG0180002183.01.T01:CDS |
| AATGGAAGTCGAAGAGCTTA+AGG | 0.422589 | 1:-34390530 | MsG0180002183.01.T01:CDS |
| CCACATCGCATGTTATCAAA+AGG | 0.430095 | 1:+34390402 | None:intergenic |
| CAGAAGAAGTTGAAGTAGTC+AGG | 0.435981 | 1:+34390327 | None:intergenic |
| TAGGACCGTTGCGTTTGGAT+TGG | 0.454200 | 1:-34390724 | MsG0180002183.01.T01:CDS |
| GGACTATAGTGTCGAGTTAG+TGG | 0.460930 | 1:-34390703 | MsG0180002183.01.T01:CDS |
| CAACTTCTTCTGGCCACCTC+CGG | 0.471703 | 1:-34390316 | MsG0180002183.01.T01:CDS |
| TAAGCTTAATGAGAAGAAGA+AGG | 0.474353 | 1:-34390553 | MsG0180002183.01.T01:CDS |
| AGAAAATACGTTGACATGCA+TGG | 0.496549 | 1:+34390795 | None:intergenic |
| TTAATGAGAAGAAGAAGGAA+TGG | 0.498438 | 1:-34390548 | MsG0180002183.01.T01:CDS |
| ATGGAAGTCGAAGAGCTTAA+GGG | 0.506592 | 1:-34390529 | MsG0180002183.01.T01:CDS |
| TTCACTGCAGCGAAGAGCGT+TGG | 0.509094 | 1:-34390827 | MsG0180002183.01.T01:CDS |
| TCGAGAATCCACTCCGGAGG+TGG | 0.511300 | 1:+34390303 | None:intergenic |
| AAAGACGACACAATTCCCTT+TGG | 0.513520 | 1:+34390443 | None:intergenic |
| TTTGGGTTCCCTAGCAAAGA+GGG | 0.514334 | 1:-34390594 | MsG0180002183.01.T01:CDS |
| CAGATTTGTCTATTGCCAAA+GGG | 0.522486 | 1:-34390458 | MsG0180002183.01.T01:CDS |
| GCTAGGGAACCCAAAACAAT+GGG | 0.530183 | 1:+34390602 | None:intergenic |
| AGTCAGGATAATCAGACAAA+GGG | 0.533962 | 1:+34390343 | None:intergenic |
| TCAGATTTGTCTATTGCCAA+AGG | 0.535639 | 1:-34390459 | MsG0180002183.01.T01:CDS |
| GAAAATACGTTGACATGCAT+GGG | 0.536010 | 1:+34390796 | None:intergenic |
| CTCGGGACATTGAACCAAAA+CGG | 0.542934 | 1:-34390864 | MsG0180002183.01.T01:CDS |
| ATGCAGTTAATAAAATTGGT+AGG | 0.543247 | 1:-34390743 | MsG0180002183.01.T01:CDS |
| ACTCACCTTCACACTCTACA+AGG | 0.545195 | 1:+34390649 | None:intergenic |
| CACATCGCATGTTATCAAAA+GGG | 0.547013 | 1:+34390403 | None:intergenic |
| AATCAGACAAAGGGATAAGC+CGG | 0.556570 | 1:+34390352 | None:intergenic |
| TGCTAGGGAACCCAAAACAA+TGG | 0.570316 | 1:+34390601 | None:intergenic |
| CAAAGAGGGTCTAAAACTGA+AGG | 0.579762 | 1:-34390580 | MsG0180002183.01.T01:CDS |
| TCTTCTGGCCACCTCCGGAG+TGG | 0.587712 | 1:-34390311 | MsG0180002183.01.T01:CDS |
| TAGTCAGGATAATCAGACAA+AGG | 0.606271 | 1:+34390342 | None:intergenic |
| TTAGTGGCTGAACATGTGAA+TGG | 0.607438 | 1:-34390687 | MsG0180002183.01.T01:CDS |
| TCGCTGCAGTGAAACAACAC+TGG | 0.608391 | 1:+34390837 | None:intergenic |
| ATATCTGCGCGTTTAAAGAG+CGG | 0.622196 | 1:-34390770 | MsG0180002183.01.T01:CDS |
| TGGCTGAACATGTGAATGGA+GGG | 0.622410 | 1:-34390683 | MsG0180002183.01.T01:CDS |
| TGAAGGTGAGTTGTTGCTAG+TGG | 0.626191 | 1:-34390637 | MsG0180002183.01.T01:CDS |
| GTGGCTGAACATGTGAATGG+AGG | 0.661757 | 1:-34390684 | MsG0180002183.01.T01:CDS |
| ATTTCGAGAATCCACTCCGG+AGG | 0.662099 | 1:+34390300 | None:intergenic |
| AAATTCCTTGTAGAGTGTGA+AGG | 0.674175 | 1:-34390654 | MsG0180002183.01.T01:CDS |
| TGCATTTCGAGAATCCACTC+CGG | 0.678133 | 1:+34390297 | None:intergenic |
| ATAGTCCAATCCAAACGCAA+CGG | 0.688094 | 1:+34390719 | None:intergenic |
| GGCTGAACATGTGAATGGAG+GGG | 0.690996 | 1:-34390682 | MsG0180002183.01.T01:CDS |
| TAGTTGCTATTATGCAACGT+GGG | 0.698080 | 1:-34390908 | MsG0180002183.01.T01:CDS |
| GTAGTTGCTATTATGCAACG+TGG | 0.761838 | 1:-34390909 | MsG0180002183.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATGCAGTTAATAAAAT+TGG | - | Chr1:34390458-34390477 | MsG0180002183.01.T01:CDS | 15.0% |
| ! | ATGCAGTTAATAAAATTGGT+AGG | - | Chr1:34390462-34390481 | MsG0180002183.01.T01:CDS | 25.0% |
| AACAAAAAAACTGTTGCTCT+CGG | - | Chr1:34390323-34390342 | MsG0180002183.01.T01:CDS | 30.0% | |
| TAAGCTTAATGAGAAGAAGA+AGG | - | Chr1:34390652-34390671 | MsG0180002183.01.T01:CDS | 30.0% | |
| TTAATGAGAAGAAGAAGGAA+TGG | - | Chr1:34390657-34390676 | MsG0180002183.01.T01:CDS | 30.0% | |
| AAATTCCTTGTAGAGTGTGA+AGG | - | Chr1:34390551-34390570 | MsG0180002183.01.T01:CDS | 35.0% | |
| ACAAAAAAACTGTTGCTCTC+GGG | - | Chr1:34390324-34390343 | MsG0180002183.01.T01:CDS | 35.0% | |
| AGAAAATACGTTGACATGCA+TGG | + | Chr1:34390413-34390432 | None:intergenic | 35.0% | |
| AGTCAGGATAATCAGACAAA+GGG | + | Chr1:34390865-34390884 | None:intergenic | 35.0% | |
| CACATCGCATGTTATCAAAA+GGG | + | Chr1:34390805-34390824 | None:intergenic | 35.0% | |
| CAGATTTGTCTATTGCCAAA+GGG | - | Chr1:34390747-34390766 | MsG0180002183.01.T01:CDS | 35.0% | |
| GAAAATACGTTGACATGCAT+GGG | + | Chr1:34390412-34390431 | None:intergenic | 35.0% | |
| TAGTCAGGATAATCAGACAA+AGG | + | Chr1:34390866-34390885 | None:intergenic | 35.0% | |
| TCAGATTTGTCTATTGCCAA+AGG | - | Chr1:34390746-34390765 | MsG0180002183.01.T01:CDS | 35.0% | |
| ! | ATCTATGACTCCCATTGTTT+TGG | - | Chr1:34390593-34390612 | MsG0180002183.01.T01:CDS | 35.0% |
| ! | TAGTTGCTATTATGCAACGT+GGG | - | Chr1:34390297-34390316 | MsG0180002183.01.T01:CDS | 35.0% |
| ! | TCTATGACTCCCATTGTTTT+GGG | - | Chr1:34390594-34390613 | MsG0180002183.01.T01:CDS | 35.0% |
| ! | TGGGATGTGTGTTTTTCATT+TGG | - | Chr1:34390823-34390842 | MsG0180002183.01.T01:CDS | 35.0% |
| ! | TTTTTCATTTGGACGAACAC+CGG | - | Chr1:34390834-34390853 | MsG0180002183.01.T01:CDS | 35.0% |
| !! | CTTTTGATAACATGCGATGT+GGG | - | Chr1:34390804-34390823 | MsG0180002183.01.T01:CDS | 35.0% |
| !!! | AAGGGATAAGGTTTTGTTCT+TGG | - | Chr1:34390694-34390713 | MsG0180002183.01.T01:CDS | 35.0% |
| !!! | AAGGTTTTGTTCTTGGGAAA+TGG | - | Chr1:34390701-34390720 | MsG0180002183.01.T01:CDS | 35.0% |
| !!! | AGGGATAAGGTTTTGTTCTT+GGG | - | Chr1:34390695-34390714 | MsG0180002183.01.T01:CDS | 35.0% |
| AAAGACGACACAATTCCCTT+TGG | + | Chr1:34390765-34390784 | None:intergenic | 40.0% | |
| AATCAGACAAAGGGATAAGC+CGG | + | Chr1:34390856-34390875 | None:intergenic | 40.0% | |
| AATGGAAGTCGAAGAGCTTA+AGG | - | Chr1:34390675-34390694 | MsG0180002183.01.T01:CDS | 40.0% | |
| ATAGTCCAATCCAAACGCAA+CGG | + | Chr1:34390489-34390508 | None:intergenic | 40.0% | |
| ATATCTGCGCGTTTAAAGAG+CGG | - | Chr1:34390435-34390454 | MsG0180002183.01.T01:CDS | 40.0% | |
| ATGGAAGTCGAAGAGCTTAA+GGG | - | Chr1:34390676-34390695 | MsG0180002183.01.T01:CDS | 40.0% | |
| CAGAAGAAGTTGAAGTAGTC+AGG | + | Chr1:34390881-34390900 | None:intergenic | 40.0% | |
| CCACATCGCATGTTATCAAA+AGG | + | Chr1:34390806-34390825 | None:intergenic | 40.0% | |
| CTGACTACTTCAACTTCTTC+TGG | - | Chr1:34390879-34390898 | MsG0180002183.01.T01:CDS | 40.0% | |
| TTAGTGGCTGAACATGTGAA+TGG | - | Chr1:34390518-34390537 | MsG0180002183.01.T01:CDS | 40.0% | |
| ! | CAAAGAGGGTCTAAAACTGA+AGG | - | Chr1:34390625-34390644 | MsG0180002183.01.T01:CDS | 40.0% |
| ! | GTAGTTGCTATTATGCAACG+TGG | - | Chr1:34390296-34390315 | MsG0180002183.01.T01:CDS | 40.0% |
| !! | CCTTTTGATAACATGCGATG+TGG | - | Chr1:34390803-34390822 | MsG0180002183.01.T01:CDS | 40.0% |
| !! | GTTTTAGACCCTCTTTGCTA+GGG | + | Chr1:34390622-34390641 | None:intergenic | 40.0% |
| !!! | AGTTTTAGACCCTCTTTGCT+AGG | + | Chr1:34390623-34390642 | None:intergenic | 40.0% |
| ACTCACCTTCACACTCTACA+AGG | + | Chr1:34390559-34390578 | None:intergenic | 45.0% | |
| CTCGGGACATTGAACCAAAA+CGG | - | Chr1:34390341-34390360 | MsG0180002183.01.T01:CDS | 45.0% | |
| GCTAGGGAACCCAAAACAAT+GGG | + | Chr1:34390606-34390625 | None:intergenic | 45.0% | |
| GTCGAAGAGCTTAAGGGATA+AGG | - | Chr1:34390682-34390701 | MsG0180002183.01.T01:CDS | 45.0% | |
| TGAAGGTGAGTTGTTGCTAG+TGG | - | Chr1:34390568-34390587 | MsG0180002183.01.T01:CDS | 45.0% | |
| TGCATTTCGAGAATCCACTC+CGG | + | Chr1:34390911-34390930 | None:intergenic | 45.0% | |
| TGCTAGGGAACCCAAAACAA+TGG | + | Chr1:34390607-34390626 | None:intergenic | 45.0% | |
| TGGCTGAACATGTGAATGGA+GGG | - | Chr1:34390522-34390541 | MsG0180002183.01.T01:CDS | 45.0% | |
| ! | ACAACACTGGATGACCGTTT+TGG | + | Chr1:34390358-34390377 | None:intergenic | 45.0% |
| ! | GGACTATAGTGTCGAGTTAG+TGG | - | Chr1:34390502-34390521 | MsG0180002183.01.T01:CDS | 45.0% |
| ! | TTTGGGTTCCCTAGCAAAGA+GGG | - | Chr1:34390611-34390630 | MsG0180002183.01.T01:CDS | 45.0% |
| !!! | TTTTGGGTTCCCTAGCAAAG+AGG | - | Chr1:34390610-34390629 | MsG0180002183.01.T01:CDS | 45.0% |
| ATTGGTAGGACCGTTGCGTT+TGG | - | Chr1:34390476-34390495 | MsG0180002183.01.T01:CDS | 50.0% | |
| ATTTCGAGAATCCACTCCGG+AGG | + | Chr1:34390908-34390927 | None:intergenic | 50.0% | |
| GGCTGAACATGTGAATGGAG+GGG | - | Chr1:34390523-34390542 | MsG0180002183.01.T01:CDS | 50.0% | |
| GTGGCTGAACATGTGAATGG+AGG | - | Chr1:34390521-34390540 | MsG0180002183.01.T01:CDS | 50.0% | |
| TAGGACCGTTGCGTTTGGAT+TGG | - | Chr1:34390481-34390500 | MsG0180002183.01.T01:CDS | 50.0% | |
| TCGCTGCAGTGAAACAACAC+TGG | + | Chr1:34390371-34390390 | None:intergenic | 50.0% | |
| CAACTTCTTCTGGCCACCTC+CGG | - | Chr1:34390889-34390908 | MsG0180002183.01.T01:CDS | 55.0% | |
| ! | TTCACTGCAGCGAAGAGCGT+TGG | - | Chr1:34390378-34390397 | MsG0180002183.01.T01:CDS | 55.0% |
| TCGAGAATCCACTCCGGAGG+TGG | + | Chr1:34390905-34390924 | None:intergenic | 60.0% | |
| TCTTCTGGCCACCTCCGGAG+TGG | - | Chr1:34390894-34390913 | MsG0180002183.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 34390284 | 34390943 | 34390284 | ID=MsG0180002183.01;Name=MsG0180002183.01 |
| Chr1 | mRNA | 34390284 | 34390943 | 34390284 | ID=MsG0180002183.01.T01;Parent=MsG0180002183.01;Name=MsG0180002183.01.T01;_AED=0.39;_eAED=0.39;_QI=0|-1|0|1|-1|1|1|0|219 |
| Chr1 | exon | 34390284 | 34390943 | 34390284 | ID=MsG0180002183.01.T01:exon:36184;Parent=MsG0180002183.01.T01 |
| Chr1 | CDS | 34390284 | 34390943 | 34390284 | ID=MsG0180002183.01.T01:cds;Parent=MsG0180002183.01.T01 |
| Gene Sequence |
| Protein sequence |
