AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016859.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016859.01.T01 MTR_3g096680 100.000 217 0 0 1 217 1 217 4.26e-152 421
MsG0380016859.01.T01 MTR_3g096680 90.417 240 0 1 1 217 1 240 9.90e-147 408
MsG0380016859.01.T01 MTR_3g096680 100.000 136 0 0 1 136 1 136 4.79e-91 264
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016859.01.T01 AT5G09260 78.539 219 42 3 1 217 1 216 6.78e-117 332
MsG0380016859.01.T01 AT5G63880 74.091 220 53 2 1 217 1 219 5.55e-112 320
MsG0380016859.01.T01 AT5G63880 66.803 244 53 3 1 217 1 243 3.35e-106 306

Find 60 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAAGATGAGAATTGAAAT+TGG 0.195549 3:+88722979 None:intergenic
AGAAGATGAAGAGGAGATTT+TGG 0.201044 3:-88721196 MsG0380016859.01.T01:CDS
GGCTGTCTTTGAAAGTTTAA+AGG 0.219717 3:-88721584 MsG0380016859.01.T01:CDS
CTGTTGCCTCATGCAGTTAC+TGG 0.256201 3:-88719686 MsG0380016859.01.T01:three_prime_UTR
ACTGAGCAAGTTTGCGTCTC+TGG 0.262924 3:+88722850 None:intergenic
GTAAAATTGTTTCACTCCTT+TGG 0.289606 3:+88719544 None:intergenic
AATGTTTATCTCACTTTGTA+TGG 0.301517 3:+88721540 None:intergenic
AAATATGTGAGGGACAAATA+AGG 0.309245 3:+88723085 None:intergenic
TGAAGATGTTCAGAAACTTA+TGG 0.330454 3:-88721518 MsG0380016859.01.T01:CDS
GGAACTGTGCTAGGAGCTTC+AGG 0.332559 3:+88720017 None:intergenic
AAAAGATGAGAATTGAAATT+GGG 0.381225 3:+88722980 None:intergenic
TTTGGCAGAGTTTGAGAACT+TGG 0.390056 3:-88721178 MsG0380016859.01.T01:CDS
CTTTCCATTTCTATTTGATA+AGG 0.391434 3:-88719599 MsG0380016859.01.T01:three_prime_UTR
GTCGTTTCCAACAGCAGTTT+CGG 0.399899 3:+88723030 None:intergenic
GGTGCCTTGGTTGGAACATC+AGG 0.402386 3:+88719966 None:intergenic
GAAGAAAGATAGGGCCTTGT+TGG 0.403435 3:-88722054 MsG0380016859.01.T01:CDS
AAGGAAATTAATGCAATACT+TGG 0.407288 3:-88721234 MsG0380016859.01.T01:CDS
CGATCTACGTCCGTTACCTT+AGG 0.414802 3:+88722894 None:intergenic
GCATCACTCGTAGTGGTAAC+TGG 0.415859 3:+88719945 None:intergenic
GAAACCTTATCAAATAGAAA+TGG 0.429916 3:+88719595 None:intergenic
AATATGTGAGGGACAAATAA+GGG 0.468508 3:+88723086 None:intergenic
AGGAAATTAATGCAATACTT+GGG 0.470100 3:-88721233 MsG0380016859.01.T01:CDS
AATGTATAATGACTTGAGAA+TGG 0.471290 3:-88719489 MsG0380016859.01.T01:three_prime_UTR
GATGCACACACTATTATTTG+AGG 0.478123 3:-88719462 MsG0380016859.01.T01:three_prime_UTR
TTGCTCAACATTTATAAGCC+AGG 0.478759 3:+88721983 None:intergenic
CTGAGCAAGTTTGCGTCTCT+GGG 0.482606 3:+88722851 None:intergenic
GTCTTTGAAAGTTTAAAGGC+TGG 0.504167 3:-88721580 MsG0380016859.01.T01:CDS
AACAGTTATGGAGGAACCAT+TGG 0.511723 3:-88719804 MsG0380016859.01.T01:intron
GCAAACCAAAGTGTAGCATC+TGG 0.514076 3:-88719739 MsG0380016859.01.T01:three_prime_UTR
CGTAGTGGTAACTGGTGCCT+TGG 0.515200 3:+88719953 None:intergenic
ATTTACAAATCGAAATCGAT+GGG 0.515535 3:-88722936 MsG0380016859.01.T01:exon
TTCGTGAAAAGAAGAAAGAT+AGG 0.520278 3:-88722064 MsG0380016859.01.T01:CDS
TGACAAGGTTGACGAAAAGT+TGG 0.521454 3:-88719994 MsG0380016859.01.T01:CDS
ACTTGCTCAGTATCAACAAA+AGG 0.527227 3:-88722838 MsG0380016859.01.T01:intron
ATTATCAGCAGAAGATGAAG+AGG 0.529769 3:-88721205 MsG0380016859.01.T01:CDS
AAACAGACCGAAACTGCTGT+TGG 0.545151 3:-88723037 MsG0380016859.01.T01:five_prime_UTR
GTGGTAACTGGTGCCTTGGT+TGG 0.551235 3:+88719957 None:intergenic
AGAAAGAGAGAAATATGTGA+GGG 0.553808 3:+88723075 None:intergenic
AATTTACAAATCGAAATCGA+TGG 0.565183 3:-88722937 MsG0380016859.01.T01:exon
GAAGACCAGATGCTACACTT+TGG 0.566982 3:+88719734 None:intergenic
AATGTTCTTCAAGCTGCCAA+TGG 0.568542 3:+88719788 None:intergenic
TATTGAAGCAAGTTGACACC+TGG 0.572175 3:-88722001 MsG0380016859.01.T01:CDS
ACCTTGTCAGGAACTGTGCT+AGG 0.576734 3:+88720008 None:intergenic
GGAAATTAATGCAATACTTG+GGG 0.576994 3:-88721232 MsG0380016859.01.T01:CDS
TATATTCGTGAAGAAACCTA+AGG 0.587486 3:-88722910 MsG0380016859.01.T01:CDS
AAGAAAGAGAGAAATATGTG+AGG 0.591113 3:+88723074 None:intergenic
TCGTGAAAAGAAGAAAGATA+GGG 0.592708 3:-88722063 MsG0380016859.01.T01:CDS
TTTCTTCTTTAACGCCAACA+AGG 0.596260 3:+88722040 None:intergenic
TGAACTGACAAGCAAGCAGA+AGG 0.603490 3:-88721605 MsG0380016859.01.T01:CDS
TTCGATTTGTAAATTCGATG+AGG 0.607402 3:+88722945 None:intergenic
TCCTAGCACAGTTCCTGACA+AGG 0.608316 3:-88720009 MsG0380016859.01.T01:CDS
TGAGGCAACAGAATTGATAG+TGG 0.610237 3:+88719698 None:intergenic
GTTTGAGAACTTGGAAACCC+AGG 0.622553 3:-88721169 MsG0380016859.01.T01:intron
CGTGAAGAAACCTAAGGTAA+CGG 0.639718 3:-88722904 MsG0380016859.01.T01:CDS
TACTTCAGCATCACTCGTAG+TGG 0.642788 3:+88719938 None:intergenic
AAAACTCCAGTAACTGCATG+AGG 0.644252 3:+88719680 None:intergenic
CCTTCCTGATGTTCCAACCA+AGG 0.677701 3:-88719970 MsG0380016859.01.T01:CDS
CCTTGGTTGGAACATCAGGA+AGG 0.680222 3:+88719970 None:intergenic
TGATGTTGCAACAGTTATGG+AGG 0.695628 3:-88719813 MsG0380016859.01.T01:intron
TTTACAAATCGAAATCGATG+GGG 0.717126 3:-88722935 MsG0380016859.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTTTTTTTTATTTTCTT+TGG + Chr3:88722778-88722797 None:intergenic 10.0%
!!! CTTTTTTTTTTATTTTCTTT+GGG + Chr3:88722777-88722796 None:intergenic 10.0%
!! ATGCATATATATATATATAG+AGG - Chr3:88721596-88721615 MsG0380016859.01.T01:CDS 15.0%
!! ATTTATATTCATGTTAAAAG+AGG + Chr3:88720954-88720973 None:intergenic 15.0%
!! TCAAGAATTGTAATAAATAT+CGG - Chr3:88720130-88720149 MsG0380016859.01.T01:intron 15.0%
!! TTTATATTCATGTTAAAAGA+GGG + Chr3:88720953-88720972 None:intergenic 15.0%
!! TTTCTGATAATTACTTATTA+GGG - Chr3:88719881-88719900 MsG0380016859.01.T01:intron 15.0%
!!! ACATTTTGTTACTAAATAAA+TGG + Chr3:88720210-88720229 None:intergenic 15.0%
!!! CTATTTTTACAATTTTCAAT+CGG + Chr3:88721908-88721927 None:intergenic 15.0%
!!! TAATATAGTGTTTTAGATTT+TGG - Chr3:88720421-88720440 MsG0380016859.01.T01:intron 15.0%
!!! TTATTTTGAGATTTTTCAAT+CGG + Chr3:88721964-88721983 None:intergenic 15.0%
!!! TTTTCTGATAATTACTTATT+AGG - Chr3:88719880-88719899 MsG0380016859.01.T01:intron 15.0%
!! AAAAGATGAGAATTGAAATT+GGG + Chr3:88719657-88719676 None:intergenic 20.0%
!! AAACATTGAATTCAATTGTT+TGG - Chr3:88722416-88722435 MsG0380016859.01.T01:intron 20.0%
!! AACCTTTAGATTAAAATAGA+TGG - Chr3:88721652-88721671 MsG0380016859.01.T01:intron 20.0%
!! AATAACAGATATGAAATTGA+GGG + Chr3:88719837-88719856 None:intergenic 20.0%
!! ATGGACTTATATGTATAAAT+AGG - Chr3:88720016-88720035 MsG0380016859.01.T01:CDS 20.0%
!! CAAATTAGGAATATGATATA+AGG - Chr3:88722496-88722515 MsG0380016859.01.T01:intron 20.0%
!! TAAAATCAATTCAACACTAA+CGG - Chr3:88721992-88722011 MsG0380016859.01.T01:CDS 20.0%
!! TAACAATGAAAATAAAGATC+TGG + Chr3:88721801-88721820 None:intergenic 20.0%
!! TAACATTAAAACAAGATGAA+GGG - Chr3:88721878-88721897 MsG0380016859.01.T01:intron 20.0%
!! TAGAGGTTATAATTCAAATT+AGG - Chr3:88722482-88722501 MsG0380016859.01.T01:intron 20.0%
!! TTCAAATTTGTGATTTCAAT+CGG + Chr3:88722022-88722041 None:intergenic 20.0%
!! TTTAATCATAGTATATGGAA+AGG - Chr3:88721562-88721581 MsG0380016859.01.T01:CDS 20.0%
!!! AAAAGTCTACTTATTTGTTT+TGG - Chr3:88720721-88720740 MsG0380016859.01.T01:intron 20.0%
!!! GAAGTATCTATAAAAAGAAA+AGG - Chr3:88722713-88722732 MsG0380016859.01.T01:intron 20.0%
!!! GATACTTACATTTATTTTGT+TGG - Chr3:88720990-88721009 MsG0380016859.01.T01:intron 20.0%
!!! TAAATGTAAGTATCTCTTTT+AGG + Chr3:88720984-88721003 None:intergenic 20.0%
! AAAAAACAATAGATGACCAA+AGG - Chr3:88723074-88723093 MsG0380016859.01.T01:five_prime_UTR 25.0%
! AACATAAAAAGACGTTGTTT+AGG - Chr3:88722113-88722132 MsG0380016859.01.T01:CDS 25.0%
! AAGGAAATTAATGCAATACT+TGG - Chr3:88721400-88721419 MsG0380016859.01.T01:intron 25.0%
! AATGTATAATGACTTGAGAA+TGG - Chr3:88723145-88723164 MsG0380016859.01.T01:five_prime_UTR 25.0%
! AATGTTTATCTCACTTTGTA+TGG + Chr3:88721097-88721116 None:intergenic 25.0%
! AATTTACAAATCGAAATCGA+TGG - Chr3:88719697-88719716 MsG0380016859.01.T01:three_prime_UTR 25.0%
! ACCATCAGATCAAAAATAAA+CGG + Chr3:88722290-88722309 None:intergenic 25.0%
! AGGAAATTAATGCAATACTT+GGG - Chr3:88721401-88721420 MsG0380016859.01.T01:intron 25.0%
! ATTGAATTCAATGTTTCGAT+TGG + Chr3:88722412-88722431 None:intergenic 25.0%
! ATTGTAAAAATAGTGCAACT+AGG - Chr3:88721915-88721934 MsG0380016859.01.T01:intron 25.0%
! ATTTACAAATCGAAATCGAT+GGG - Chr3:88719698-88719717 MsG0380016859.01.T01:three_prime_UTR 25.0%
! CAAAAGATGAGAATTGAAAT+TGG + Chr3:88719658-88719677 None:intergenic 25.0%
! CTTTCCATTTCTATTTGATA+AGG - Chr3:88723035-88723054 MsG0380016859.01.T01:five_prime_UTR 25.0%
! GAAACCTTATCAAATAGAAA+TGG + Chr3:88723042-88723061 None:intergenic 25.0%
! GAATAACAGATATGAAATTG+AGG + Chr3:88719838-88719857 None:intergenic 25.0%
! GTAACATTAAAACAAGATGA+AGG - Chr3:88721877-88721896 MsG0380016859.01.T01:intron 25.0%
! TGAACAATTGAACTAAAGTT+TGG - Chr3:88719915-88719934 MsG0380016859.01.T01:intron 25.0%
!! AATATGAATGGATTTAAGTC+AGG + Chr3:88721522-88721541 None:intergenic 25.0%
!! AATTTTATTGGGAGTGAAAT+AGG + Chr3:88721711-88721730 None:intergenic 25.0%
!! ACAATTTTACTGAACTGTTT+TGG - Chr3:88723103-88723122 MsG0380016859.01.T01:five_prime_UTR 25.0%
!! ATTGAGATTTTTGTTCTGTT+GGG - Chr3:88721296-88721315 MsG0380016859.01.T01:intron 25.0%
!! ATTTGAAATTCATTCGAAAC+AGG - Chr3:88722035-88722054 MsG0380016859.01.T01:CDS 25.0%
!! TTATGTTTGAGATGTGAATT+GGG + Chr3:88722100-88722119 None:intergenic 25.0%
!! TTTATGTTTGAGATGTGAAT+TGG + Chr3:88722101-88722120 None:intergenic 25.0%
!!! AGCCATCTATTTTAATCTAA+AGG + Chr3:88721657-88721676 None:intergenic 25.0%
!!! CACTTTTTTGGTTATTAACT+GGG - Chr3:88720397-88720416 MsG0380016859.01.T01:intron 25.0%
!!! CATGATTTTGCTTAATTTGA+AGG - Chr3:88721381-88721400 MsG0380016859.01.T01:intron 25.0%
!!! GTTTTTAGTTTTTTCTGTTG+AGG + Chr3:88719635-88719654 None:intergenic 25.0%
!!! TCTACTTATTTGTTTTGGTT+TGG - Chr3:88720726-88720745 MsG0380016859.01.T01:intron 25.0%
AAAGATCTGGTCATTAACAT+TGG + Chr3:88721788-88721807 None:intergenic 30.0%
AAATATGTGAGGGACAAATA+AGG + Chr3:88719552-88719571 None:intergenic 30.0%
AACAACAGTAATCAATACAG+TGG + Chr3:88720043-88720062 None:intergenic 30.0%
AAGAAAGAGAGAAATATGTG+AGG + Chr3:88719563-88719582 None:intergenic 30.0%
AAGGATGTATTGCATATACA+TGG + Chr3:88722524-88722543 None:intergenic 30.0%
AAGTTCAATGAATCTAGATG+TGG + Chr3:88721227-88721246 None:intergenic 30.0%
AATATGTGAGGGACAAATAA+GGG + Chr3:88719551-88719570 None:intergenic 30.0%
AGAAAGAGAGAAATATGTGA+GGG + Chr3:88719562-88719581 None:intergenic 30.0%
AGAAAGGAAAAACTCAAGTA+AGG + Chr3:88720486-88720505 None:intergenic 30.0%
AGAGAGTGAGTCATTATTAT+TGG + Chr3:88720753-88720772 None:intergenic 30.0%
CATGCAATAAGAATTTATGG+GGG + Chr3:88722547-88722566 None:intergenic 30.0%
CCATGCAATAAGAATTTATG+GGG + Chr3:88722548-88722567 None:intergenic 30.0%
CTAAATTTCCTCTATGCTAT+AGG + Chr3:88720162-88720181 None:intergenic 30.0%
GCCATGCAATAAGAATTTAT+GGG + Chr3:88722549-88722568 None:intergenic 30.0%
GGAAAATAAAGAACACAGAA+AGG + Chr3:88720502-88720521 None:intergenic 30.0%
GGAAATTAATGCAATACTTG+GGG - Chr3:88721402-88721421 MsG0380016859.01.T01:intron 30.0%
GTAAAATTGTTTCACTCCTT+TGG + Chr3:88723093-88723112 None:intergenic 30.0%
TACCTGTTAGTATCTTTCTA+TGG - Chr3:88720772-88720791 MsG0380016859.01.T01:intron 30.0%
TATAGAAGTTGACTAACTGA+TGG - Chr3:88722797-88722816 MsG0380016859.01.T01:intron 30.0%
TATATTCGTGAAGAAACCTA+AGG - Chr3:88719724-88719743 MsG0380016859.01.T01:three_prime_UTR 30.0%
TCGTGAAAAGAAGAAAGATA+GGG - Chr3:88720571-88720590 MsG0380016859.01.T01:intron 30.0%
TGAAGATGTTCAGAAACTTA+TGG - Chr3:88721116-88721135 MsG0380016859.01.T01:intron 30.0%
TGCCATGCAATAAGAATTTA+TGG + Chr3:88722550-88722569 None:intergenic 30.0%
TGCTAACAAGTAGAGATTAT+CGG + Chr3:88720832-88720851 None:intergenic 30.0%
TGTATGGAAAATGAATTAGC+TGG - Chr3:88720358-88720377 MsG0380016859.01.T01:intron 30.0%
TGTTGGGCTGTTAATATATT+TGG - Chr3:88721312-88721331 MsG0380016859.01.T01:intron 30.0%
TTCGTGAAAAGAAGAAAGAT+AGG - Chr3:88720570-88720589 MsG0380016859.01.T01:intron 30.0%
TTTACAAATCGAAATCGATG+GGG - Chr3:88719699-88719718 MsG0380016859.01.T01:three_prime_UTR 30.0%
! CACTACTTCTCATTTTCATA+TGG - Chr3:88719997-88720016 MsG0380016859.01.T01:CDS 30.0%
! GATTGAGATTTTTGTTCTGT+TGG - Chr3:88721295-88721314 MsG0380016859.01.T01:intron 30.0%
! TACTTGTTAGCATCTTTCTA+TGG - Chr3:88720840-88720859 MsG0380016859.01.T01:intron 30.0%
! TATGTTTGAGATGTGAATTG+GGG + Chr3:88722099-88722118 None:intergenic 30.0%
! TTCGATTTGTAAATTCGATG+AGG + Chr3:88719692-88719711 None:intergenic 30.0%
!! AGAAGGCGTGAAAATTTTAT+TGG + Chr3:88721723-88721742 None:intergenic 30.0%
!! CTGGCTTTAATCATAGTATA+TGG - Chr3:88721557-88721576 MsG0380016859.01.T01:CDS 30.0%
!! GAAATTGAGGGTATTGAAAA+AGG + Chr3:88719825-88719844 None:intergenic 30.0%
!! GAAGGCGTGAAAATTTTATT+GGG + Chr3:88721722-88721741 None:intergenic 30.0%
!! TTTATTTTCTTTGGGAGAGA+GGG + Chr3:88722769-88722788 None:intergenic 30.0%
!!! AGTTTTTTCTGTTGAGGTTT+TGG + Chr3:88719629-88719648 None:intergenic 30.0%
!!! GCACTTTTTTGGTTATTAAC+TGG - Chr3:88720396-88720415 MsG0380016859.01.T01:intron 30.0%
!!! TTTTATTTTCTTTGGGAGAG+AGG + Chr3:88722770-88722789 None:intergenic 30.0%
AAAATGAATTAGCTGGACGT+TGG - Chr3:88720365-88720384 MsG0380016859.01.T01:intron 35.0%
AAAGCTGCAGAAAATCTGAA+TGG - Chr3:88722204-88722223 MsG0380016859.01.T01:intron 35.0%
AACATTGCTTAGAGAAGAGA+TGG + Chr3:88722443-88722462 None:intergenic 35.0%
AACTGAAAAATCCATGTACC+TGG + Chr3:88721486-88721505 None:intergenic 35.0%
AAGCTGCAGAAAATCTGAAT+GGG - Chr3:88722205-88722224 MsG0380016859.01.T01:intron 35.0%
ACAAGTAGAGATTATCGGAA+AGG + Chr3:88720827-88720846 None:intergenic 35.0%
ACACCAGATACAATCAAAGA+CGG + Chr3:88720341-88720360 None:intergenic 35.0%
ACATTGCTTAGAGAAGAGAT+GGG + Chr3:88722442-88722461 None:intergenic 35.0%
ACTGAAAAATCCATGTACCT+GGG + Chr3:88721485-88721504 None:intergenic 35.0%
ACTTGCTCAGTATCAACAAA+AGG - Chr3:88719796-88719815 MsG0380016859.01.T01:CDS 35.0%
AGCCATAGAAAGATACTAAC+AGG + Chr3:88720777-88720796 None:intergenic 35.0%
ATCTCTTCTGAACAGGATAT+CGG + Chr3:88720912-88720931 None:intergenic 35.0%
ATTATCAGCAGAAGATGAAG+AGG - Chr3:88721429-88721448 MsG0380016859.01.T01:intron 35.0%
CAAGTAGAGATTATCGGAAA+GGG + Chr3:88720826-88720845 None:intergenic 35.0%
CAATAAGAATTTATGGGGGA+AGG + Chr3:88722543-88722562 None:intergenic 35.0%
CCCCATAAATTCTTATTGCA+TGG - Chr3:88722545-88722564 MsG0380016859.01.T01:intron 35.0%
CTCAATTATCTCTTCTGAAC+AGG + Chr3:88720919-88720938 None:intergenic 35.0%
CTTTGATTGTATCTGGTGTA+TGG - Chr3:88720342-88720361 MsG0380016859.01.T01:intron 35.0%
GATGCACACACTATTATTTG+AGG - Chr3:88723172-88723191 MsG0380016859.01.T01:five_prime_UTR 35.0%
TACAGCTGGACAAATATGAA+TGG + Chr3:88721534-88721553 None:intergenic 35.0%
TTGCTCAACATTTATAAGCC+AGG + Chr3:88720654-88720673 None:intergenic 35.0%
TTTCTTCTTTAACGCCAACA+AGG + Chr3:88720597-88720616 None:intergenic 35.0%
! AACTTGAGTGTACCTTTTTG+GGG - Chr3:88721242-88721261 MsG0380016859.01.T01:intron 35.0%
! AATTCTCATCTACTTGCTGA+TGG - Chr3:88721354-88721373 MsG0380016859.01.T01:intron 35.0%
! AGAAGATGAAGAGGAGATTT+TGG - Chr3:88721438-88721457 MsG0380016859.01.T01:intron 35.0%
! GAACTTGAGTGTACCTTTTT+GGG - Chr3:88721241-88721260 MsG0380016859.01.T01:intron 35.0%
! GGCTGTCTTTGAAAGTTTAA+AGG - Chr3:88721050-88721069 MsG0380016859.01.T01:intron 35.0%
! GTCTTTGAAAGTTTAAAGGC+TGG - Chr3:88721054-88721073 MsG0380016859.01.T01:intron 35.0%
! TAGCTCAGTGTTGTTAATCT+CGG + Chr3:88720310-88720329 None:intergenic 35.0%
! TGAACTTGAGTGTACCTTTT+TGG - Chr3:88721240-88721259 MsG0380016859.01.T01:intron 35.0%
! TTGATAAGCTTTTGCTTCAG+CGG + Chr3:88721148-88721167 None:intergenic 35.0%
!!! GCCGTTTATTTTTGATCTGA+TGG - Chr3:88722286-88722305 MsG0380016859.01.T01:intron 35.0%
!!! TGGTGATGATTGCACTTTTT+TGG - Chr3:88720385-88720404 MsG0380016859.01.T01:intron 35.0%
AAAACTCCAGTAACTGCATG+AGG + Chr3:88722957-88722976 None:intergenic 40.0%
AACAGTTATGGAGGAACCAT+TGG - Chr3:88722830-88722849 MsG0380016859.01.T01:intron 40.0%
AATGTTCTTCAAGCTGCCAA+TGG + Chr3:88722849-88722868 None:intergenic 40.0%
ACTCAATGGCTCAATAGACA+AGG + Chr3:88720878-88720897 None:intergenic 40.0%
AGACCGTCTTTGATTGTATC+TGG - Chr3:88720335-88720354 MsG0380016859.01.T01:intron 40.0%
ATAGACTAAGTGAGGCACAT+GGG - Chr3:88722236-88722255 MsG0380016859.01.T01:intron 40.0%
ATTAAAGCCAGTAGTACAGC+TGG + Chr3:88721548-88721567 None:intergenic 40.0%
CGAAGAAACCAAAAAGCAGT+GGG - Chr3:88719468-88719487 MsG0380016859.01.T01:three_prime_UTR 40.0%
CGGAAAGGGAAAATACTCAA+TGG + Chr3:88720892-88720911 None:intergenic 40.0%
CGTGAAGAAACCTAAGGTAA+CGG - Chr3:88719730-88719749 MsG0380016859.01.T01:three_prime_UTR 40.0%
CTTCAATAACAGCATCAAGC+TGG + Chr3:88720523-88720542 None:intergenic 40.0%
GAAAATCTGAATGGGTATGG+TGG - Chr3:88722213-88722232 MsG0380016859.01.T01:intron 40.0%
GAAGAAACCAAAAAGCAGTG+GGG - Chr3:88719469-88719488 MsG0380016859.01.T01:three_prime_UTR 40.0%
GAGCTAGTGATTGACTATAG+AGG - Chr3:88722465-88722484 MsG0380016859.01.T01:intron 40.0%
GATCTGGTCATTAACATTGG+TGG + Chr3:88721785-88721804 None:intergenic 40.0%
GCAGAAAATCTGAATGGGTA+TGG - Chr3:88722210-88722229 MsG0380016859.01.T01:intron 40.0%
GGCATATCGTAGAACAATAG+AGG + Chr3:88720189-88720208 None:intergenic 40.0%
TATTTGTCCAGCTGTACTAC+TGG - Chr3:88721538-88721557 MsG0380016859.01.T01:CDS 40.0%
TCTATGCTACAGTGCTATAG+CGG + Chr3:88720255-88720274 None:intergenic 40.0%
TCTGAACAGGATATCGGAAA+GGG + Chr3:88720906-88720925 None:intergenic 40.0%
TGACAAGGTTGACGAAAAGT+TGG - Chr3:88722640-88722659 MsG0380016859.01.T01:intron 40.0%
TGAGGCAACAGAATTGATAG+TGG + Chr3:88722939-88722958 None:intergenic 40.0%
TGATGTTGCAACAGTTATGG+AGG - Chr3:88722821-88722840 MsG0380016859.01.T01:intron 40.0%
TTCTGAACAGGATATCGGAA+AGG + Chr3:88720907-88720926 None:intergenic 40.0%
TTTCAGAAGCAGCAAGAGTA+AGG + Chr3:88721196-88721215 None:intergenic 40.0%
TTTGACGTGCACAATGAGAA+TGG + Chr3:88719860-88719879 None:intergenic 40.0%
TTTGGCAGAGTTTGAGAACT+TGG - Chr3:88721456-88721475 MsG0380016859.01.T01:intron 40.0%
! AACTTTTCGTCAACCTTGTC+AGG + Chr3:88722641-88722660 None:intergenic 40.0%
! TATTGAAGCAAGTTGACACC+TGG - Chr3:88720633-88720652 MsG0380016859.01.T01:intron 40.0%
!! TATGGTGGATAGACTAAGTG+AGG - Chr3:88722228-88722247 MsG0380016859.01.T01:intron 40.0%
!!! GCAGTTACTGGAGTTTTGAA+TGG - Chr3:88722960-88722979 MsG0380016859.01.T01:five_prime_UTR 40.0%
AAACAGACCGAAACTGCTGT+TGG - Chr3:88719597-88719616 MsG0380016859.01.T01:three_prime_UTR 45.0%
AACTTGGAAACCCAGGTACA+TGG - Chr3:88721472-88721491 MsG0380016859.01.T01:intron 45.0%
CAAAAAGCAGTGGGGTTCAT+AGG - Chr3:88719477-88719496 MsG0380016859.01.T01:three_prime_UTR 45.0%
CTGGTCATTAACATTGGTGG+TGG + Chr3:88721782-88721801 None:intergenic 45.0%
GAAGACCAGATGCTACACTT+TGG + Chr3:88722903-88722922 None:intergenic 45.0%
GATAGACTAAGTGAGGCACA+TGG - Chr3:88722235-88722254 MsG0380016859.01.T01:intron 45.0%
GATCTTCGACTGCAAACTGT+TGG + Chr3:88722595-88722614 None:intergenic 45.0%
GCAAACCAAAGTGTAGCATC+TGG - Chr3:88722895-88722914 MsG0380016859.01.T01:CDS 45.0%
GCGAAGAAACCAAAAAGCAG+TGG - Chr3:88719467-88719486 MsG0380016859.01.T01:three_prime_UTR 45.0%
GCTATAGCACTGTAGCATAG+AGG - Chr3:88720254-88720273 MsG0380016859.01.T01:intron 45.0%
GGCTATAGCCTATAGCATAG+AGG - Chr3:88720151-88720170 MsG0380016859.01.T01:intron 45.0%
GGCTGATGTTGCAACAGTTA+TGG - Chr3:88722818-88722837 MsG0380016859.01.T01:intron 45.0%
GTCGTTTCCAACAGCAGTTT+CGG + Chr3:88719607-88719626 None:intergenic 45.0%
GTTTGAGAACTTGGAAACCC+AGG - Chr3:88721465-88721484 MsG0380016859.01.T01:intron 45.0%
TACTTCAGCATCACTCGTAG+TGG + Chr3:88722699-88722718 None:intergenic 45.0%
TATGCAGCTAACTGAGAGAG+AGG + Chr3:88722364-88722383 None:intergenic 45.0%
TGAACTGACAAGCAAGCAGA+AGG - Chr3:88721029-88721048 MsG0380016859.01.T01:intron 45.0%
TTGAAATGGGGGAGTGGAAT+TGG + Chr3:88721756-88721775 None:intergenic 45.0%
! GAAGAAAGATAGGGCCTTGT+TGG - Chr3:88720580-88720599 MsG0380016859.01.T01:intron 45.0%
!! ATTGGTGGTGGTGGTTGAAA+TGG + Chr3:88721770-88721789 None:intergenic 45.0%
!! CTATGAACCCCACTGCTTTT+TGG + Chr3:88719479-88719498 None:intergenic 45.0%
!! GGTAGGCATTGAAGTTGTAC+TGG - Chr3:88721269-88721288 MsG0380016859.01.T01:intron 45.0%
!! GTCATTAACATTGGTGGTGG+TGG + Chr3:88721779-88721798 None:intergenic 45.0%
!! TGAGTGTACCTTTTTGGGGA+CGG - Chr3:88721246-88721265 MsG0380016859.01.T01:intron 45.0%
!! TTGGTGGTGGTGGTTGAAAT+GGG + Chr3:88721769-88721788 None:intergenic 45.0%
!! TTTTCTTTGGGAGAGAGGGA+CGG + Chr3:88722765-88722784 None:intergenic 45.0%
!!! CTGCTTTTTGGTTTCTTCGC+TGG + Chr3:88719467-88719486 None:intergenic 45.0%
AAATGGGGGAGTGGAATTGG+AGG + Chr3:88721753-88721772 None:intergenic 50.0%
ACCTTGTCAGGAACTGTGCT+AGG + Chr3:88722629-88722648 None:intergenic 50.0%
ACTGAGCAAGTTTGCGTCTC+TGG + Chr3:88719787-88719806 None:intergenic 50.0%
AGCTGCATAATGTGACTGCC+TGG - Chr3:88722375-88722394 MsG0380016859.01.T01:intron 50.0%
CCTTCCTGATGTTCCAACCA+AGG - Chr3:88722664-88722683 MsG0380016859.01.T01:intron 50.0%
CCTTGGTTGGAACATCAGGA+AGG + Chr3:88722667-88722686 None:intergenic 50.0%
CGATCTACGTCCGTTACCTT+AGG + Chr3:88719743-88719762 None:intergenic 50.0%
CGATTGGCAGCATAACTACC+AGG + Chr3:88722396-88722415 None:intergenic 50.0%
CTGAGCAAGTTTGCGTCTCT+GGG + Chr3:88719786-88719805 None:intergenic 50.0%
CTGTTGCCTCATGCAGTTAC+TGG - Chr3:88722948-88722967 MsG0380016859.01.T01:five_prime_UTR 50.0%
GAATTGGAGGCTGGAGAAGA+AGG + Chr3:88721740-88721759 None:intergenic 50.0%
GCATCACTCGTAGTGGTAAC+TGG + Chr3:88722692-88722711 None:intergenic 50.0%
TCCTAGCACAGTTCCTGACA+AGG - Chr3:88722625-88722644 MsG0380016859.01.T01:intron 50.0%
! TTTCTTTGGGAGAGAGGGAC+GGG + Chr3:88722764-88722783 None:intergenic 50.0%
!! AGTGTACCTTTTTGGGGACG+GGG - Chr3:88721248-88721267 MsG0380016859.01.T01:intron 50.0%
!! GAGTGTACCTTTTTGGGGAC+GGG - Chr3:88721247-88721266 MsG0380016859.01.T01:intron 50.0%
!! TGGTGGTGGTGGTTGAAATG+GGG + Chr3:88721768-88721787 None:intergenic 50.0%
CGTAGTGGTAACTGGTGCCT+TGG + Chr3:88722684-88722703 None:intergenic 55.0%
GGAACTGTGCTAGGAGCTTC+AGG + Chr3:88722620-88722639 None:intergenic 55.0%
GGTGCCTTGGTTGGAACATC+AGG + Chr3:88722671-88722690 None:intergenic 55.0%
GTGGTAACTGGTGCCTTGGT+TGG + Chr3:88722680-88722699 None:intergenic 55.0%
TGGTGGTTGAAATGGGGGAG+TGG + Chr3:88721762-88721781 None:intergenic 55.0%
! TTCTTTGGGAGAGAGGGACG+GGG + Chr3:88722763-88722782 None:intergenic 55.0%
!! GGTGGTGGTGGTTGAAATGG+GGG + Chr3:88721767-88721786 None:intergenic 55.0%
!! TACCTTTTTGGGGACGGGGT+AGG - Chr3:88721252-88721271 MsG0380016859.01.T01:intron 55.0%
GTGCTATAGCGGTGCAGCAG+CGG + Chr3:88720244-88720263 None:intergenic 60.0%
TGCCTACCCCGTCCCCAAAA+AGG + Chr3:88721257-88721276 None:intergenic 60.0%
! TCTTTGGGAGAGAGGGACGG+GGG + Chr3:88722762-88722781 None:intergenic 60.0%
AGGGACGGGGGTGGTTCAGA+GGG + Chr3:88722750-88722769 None:intergenic 65.0%
GGGGGAGTGGAATTGGAGGC+TGG + Chr3:88721749-88721768 None:intergenic 65.0%
GGGGGTGGTTCAGAGGGATG+AGG + Chr3:88722744-88722763 None:intergenic 65.0%
TATAGCGGTGCAGCAGCGGC+TGG + Chr3:88720240-88720259 None:intergenic 65.0%
GAGGGACGGGGGTGGTTCAG+AGG + Chr3:88722751-88722770 None:intergenic 70.0%
TTGGGAGAGAGGGACGGGGG+TGG + Chr3:88722759-88722778 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 88719461 88723195 88719461 ID=MsG0380016859.01;Name=MsG0380016859.01
Chr3 mRNA 88719461 88723195 88719461 ID=MsG0380016859.01.T01;Parent=MsG0380016859.01;Name=MsG0380016859.01.T01;_AED=0.34;_eAED=0.34;_QI=255|1|1|1|0.8|0.66|6|335|217
Chr3 exon 88719461 88719821 88719461 ID=MsG0380016859.01.T01:exon:3176;Parent=MsG0380016859.01.T01
Chr3 exon 88719922 88720057 88719922 ID=MsG0380016859.01.T01:exon:3175;Parent=MsG0380016859.01.T01
Chr3 exon 88721170 88721253 88721170 ID=MsG0380016859.01.T01:exon:3174;Parent=MsG0380016859.01.T01
Chr3 exon 88721486 88721638 88721486 ID=MsG0380016859.01.T01:exon:3173;Parent=MsG0380016859.01.T01
Chr3 exon 88721980 88722132 88721980 ID=MsG0380016859.01.T01:exon:3172;Parent=MsG0380016859.01.T01
Chr3 exon 88722839 88723195 88722839 ID=MsG0380016859.01.T01:exon:3171;Parent=MsG0380016859.01.T01
Chr3 five_prime_UTR 88722941 88723195 88722941 ID=MsG0380016859.01.T01:five_prime_utr;Parent=MsG0380016859.01.T01
Chr3 CDS 88722839 88722940 88722839 ID=MsG0380016859.01.T01:cds;Parent=MsG0380016859.01.T01
Chr3 CDS 88721980 88722132 88721980 ID=MsG0380016859.01.T01:cds;Parent=MsG0380016859.01.T01
Chr3 CDS 88721486 88721638 88721486 ID=MsG0380016859.01.T01:cds;Parent=MsG0380016859.01.T01
Chr3 CDS 88721170 88721253 88721170 ID=MsG0380016859.01.T01:cds;Parent=MsG0380016859.01.T01
Chr3 CDS 88719922 88720057 88719922 ID=MsG0380016859.01.T01:cds;Parent=MsG0380016859.01.T01
Chr3 CDS 88719796 88719821 88719796 ID=MsG0380016859.01.T01:cds;Parent=MsG0380016859.01.T01
Chr3 three_prime_UTR 88719461 88719795 88719461 ID=MsG0380016859.01.T01:three_prime_utr;Parent=MsG0380016859.01.T01
Gene Sequence

>MsG0380016859.01.T01

ATGGGGAATATATTCGTGAAGAAACCTAAGGTAACGGACGTAGATCGTGCAATTCTAGCACTCAAGACCCAGAGACGCAAACTTGCTCAGTATCAACAAAAGCTTGATGCTGTTATTGAAGCAGAAAAGCAAGCTGCACGAGACTTGATTCGTGAAAAGAAGAAAGATAGGGCCTTGTTGGCGTTAAAGAAGAAAAAGACACAAGAAGAATTATTGAAGCAAGTTGACACCTGGCTTATAAATGTTGAGCAACAATTAGCAGATATTGAACTGACAAGCAAGCAGAAGGCTGTCTTTGAAAGTTTAAAGGCTGGTAGTAAAGCAATTGAAGCCATACAAAGTGAGATAAACATTGAAGATGTTCAGAAACTTATGGATGACACCGCTGAAGCAAAAGCTTATCAAGATGAAATTAATGCAATACTTGGGGAGCAATTATCAGCAGAAGATGAAGAGGAGATTTTGGCAGAGTTTGAGAACTTGGAAACCCAGTTTGCAGTCGAAGATCTTCCTGAAGCTCCTAGCACAGTTCCTGACAAGGTTGACGAAAAGTTGGACCTTCCTGATGTTCCAACCAAGGCACCAGTTACCACTACGAGTGATGCTGAAGTATCTATAAAAAGAAAAGTTATGGAGGAACCATTGGCAGCTTGA

Protein sequence

>MsG0380016859.01.T01

MGNIFVKKPKVTDVDRAILALKTQRRKLAQYQQKLDAVIEAEKQAARDLIREKKKDRALLALKKKKTQEELLKQVDTWLINVEQQLADIELTSKQKAVFESLKAGSKAIEAIQSEINIEDVQKLMDDTAEAKAYQDEINAILGEQLSAEDEEEILAEFENLETQFAVEDLPEAPSTVPDKVDEKLDLPDVPTKAPVTTTSDAEVSIKRKVMEEPLAA*