Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004184.01.T02 | PNX56048.1 | 95.699 | 93 | 4 | 0 | 1 | 93 | 1 | 93 | 2.73E-58 | 187 |
| MsG0180004184.01.T01 | PNX56048.1 | 95.699 | 93 | 4 | 0 | 1 | 93 | 1 | 93 | 2.73E-58 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004184.01.T01 | Q9FHM4 | 81.72 | 93 | 17 | 0 | 1 | 93 | 1 | 93 | 1.65E-39 | 141 |
| MsG0180004184.01.T02 | Q9FHM4 | 81.72 | 93 | 17 | 0 | 1 | 93 | 1 | 93 | 1.65E-39 | 141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004184.01.T01 | A0A072VLD1 | 97.849 | 93 | 2 | 0 | 1 | 93 | 1 | 93 | 9.93e-56 | 193 |
| MsG0180004184.01.T01 | A0A2K3K936 | 95.699 | 93 | 4 | 0 | 1 | 93 | 1 | 93 | 1.30e-58 | 187 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048781.01 | MsG0180004184.01 | 0.806011 | 1.011782e-49 | 5.432435e-47 |
| MsG0180001293.01 | MsG0180004184.01 | 0.810895 | 9.180912e-51 | 5.602293e-48 |
| MsG0180002397.01 | MsG0180004184.01 | 0.843202 | 1.619524e-58 | 2.514891e-55 |
| MsG0180003658.01 | MsG0180004184.01 | 0.852741 | 3.784430e-61 | 7.985796e-58 |
| MsG0180003857.01 | MsG0180004184.01 | 0.846969 | 1.554845e-59 | 2.722436e-56 |
| MsG0180004126.01 | MsG0180004184.01 | 0.855347 | 6.707656e-62 | 1.544177e-58 |
| MsG0180004184.01 | MsG0180004185.01 | 0.831115 | 2.003718e-55 | 2.153567e-52 |
| MsG0180004184.01 | MsG0180004299.01 | 0.844522 | 7.178323e-59 | 1.161968e-55 |
| MsG0180004184.01 | MsG0180005655.01 | 0.818969 | 1.484883e-52 | 1.128038e-49 |
| MsG0180004184.01 | MsG0280006563.01 | 0.828042 | 1.119980e-54 | 1.100517e-51 |
| MsG0180004184.01 | MsG0280007419.01 | 0.810861 | 9.338120e-51 | 5.693011e-48 |
| MsG0180004184.01 | MsG0280010579.01 | 0.845568 | 3.744068e-59 | 6.265449e-56 |
| MsG0180004184.01 | MsG0280011331.01 | 0.812624 | 3.859817e-51 | 2.466228e-48 |
| MsG0180004184.01 | MsG0380014807.01 | 0.814674 | 1.365896e-51 | 9.223590e-49 |
| MsG0180004184.01 | MsG0380015219.01 | 0.830978 | 2.165951e-55 | 2.318592e-52 |
| MsG0180004184.01 | MsG0380015394.01 | 0.832121 | 1.132671e-55 | 1.254110e-52 |
| MsG0180004184.01 | MsG0380015954.01 | 0.807606 | 4.655345e-50 | 2.604227e-47 |
| MsG0180004184.01 | MsG0380016051.01 | 0.802270 | 6.076474e-49 | 2.963837e-46 |
| MsG0180004184.01 | MsG0380016091.01 | 0.828797 | 7.363704e-55 | 7.395475e-52 |
| MsG0180004184.01 | MsG0380016092.01 | 0.818611 | 1.791261e-52 | 1.347161e-49 |
| MsG0180004184.01 | MsG0380016217.01 | 0.841030 | 6.081610e-58 | 8.822748e-55 |
| MsG0180004184.01 | MsG0380016856.01 | 0.816417 | 5.589469e-52 | 3.958207e-49 |
| MsG0180004184.01 | MsG0380017332.01 | 0.801432 | 9.031081e-49 | 4.312234e-46 |
| MsG0180004184.01 | MsG0380017361.01 | 0.820978 | 5.155461e-53 | 4.141320e-50 |
| MsG0180004184.01 | MsG0380017605.01 | 0.816816 | 4.549221e-52 | 3.257036e-49 |
| MsG0180004184.01 | MsG0380017632.01 | 0.811487 | 6.829970e-51 | 4.233431e-48 |
| MsG0180004184.01 | MsG0480018526.01 | 0.803495 | 3.392680e-49 | 1.707436e-46 |
| MsG0180004184.01 | MsG0480018785.01 | 0.800676 | 1.288858e-48 | 6.037689e-46 |
| MsG0180004184.01 | MsG0480018885.01 | 0.800224 | 1.593600e-48 | 7.379915e-46 |
| MsG0180004184.01 | MsG0480020398.01 | 0.806427 | 8.268150e-50 | 4.486528e-47 |
| MsG0180004184.01 | MsG0480020856.01 | 0.829663 | 4.538933e-55 | 4.676268e-52 |
| MsG0180004184.01 | MsG0480022784.01 | 0.817592 | 3.044863e-52 | 2.226744e-49 |
| MsG0180004184.01 | MsG0480022931.01 | 0.807578 | 4.719391e-50 | 2.638064e-47 |
| MsG0180004184.01 | MsG0480022991.01 | 0.802220 | 6.222004e-49 | 3.030864e-46 |
| MsG0180004184.01 | MsG0480022992.01 | 0.800528 | 1.381897e-48 | 6.449010e-46 |
| MsG0180004184.01 | MsG0480023003.01 | 0.810751 | 9.864263e-51 | 5.996074e-48 |
| MsG0180004184.01 | MsG0480023064.01 | 0.805703 | 1.174405e-49 | 6.256203e-47 |
| MsG0180004184.01 | MsG0480023484.01 | 0.819010 | 1.453923e-52 | 1.105743e-49 |
| MsG0180004184.01 | MsG0480023672.01 | 0.803600 | 3.226190e-49 | 1.628051e-46 |
| MsG0180004184.01 | MsG0480023706.01 | 0.832758 | 7.875838e-56 | 8.887173e-53 |
| MsG0180004184.01 | MsG0480023944.01 | 0.812451 | 4.212167e-51 | 2.679287e-48 |
| MsG0180004184.01 | MsG0580024787.01 | 0.844669 | 6.552010e-59 | 1.065465e-55 |
| MsG0180004184.01 | MsG0580024813.01 | 0.800351 | 1.501334e-48 | 6.975277e-46 |
| MsG0180004184.01 | MsG0580025093.01 | 0.818419 | 1.979482e-52 | 1.481073e-49 |
| MsG0180004184.01 | MsG0580025775.01 | 0.824134 | 9.512841e-54 | 8.353386e-51 |
| MsG0180004184.01 | MsG0580029123.01 | 0.808466 | 3.055494e-50 | 1.748360e-47 |
| MsG0180004184.01 | MsG0680031616.01 | 0.801520 | 8.661731e-49 | 4.145141e-46 |
| MsG0180004184.01 | MsG0680032772.01 | 0.826485 | 2.643550e-54 | 2.482375e-51 |
| MsG0180004184.01 | MsG0680035350.01 | 0.803337 | 3.658803e-49 | 1.833797e-46 |
| MsG0180004184.01 | MsG0780038445.01 | 0.823947 | 1.052504e-53 | 9.194309e-51 |
| MsG0180004184.01 | MsG0780039861.01 | 0.805462 | 1.319725e-49 | 6.986488e-47 |
| MsG0180004184.01 | MsG0780040641.01 | 0.819334 | 1.226506e-52 | 9.409932e-50 |
| MsG0180004184.01 | MsG0780041141.01 | 0.842876 | 1.978829e-58 | 3.041371e-55 |
| MsG0180004184.01 | MsG0780041340.01 | 0.822777 | 1.975376e-53 | 1.669491e-50 |
| MsG0180004184.01 | MsG0780041359.01 | 0.823166 | 1.603583e-53 | 1.370166e-50 |
| MsG0180004184.01 | MsG0880041930.01 | 0.820372 | 7.102116e-53 | 5.609480e-50 |
| MsG0180004184.01 | MsG0880044103.01 | 0.806439 | 8.219894e-50 | 4.461697e-47 |
| MsG0180004184.01 | MsG0880044437.01 | 0.816477 | 5.420065e-52 | 3.844538e-49 |
| MsG0180004184.01 | MsG0880045439.01 | 0.832371 | 9.822197e-56 | 1.095645e-52 |
| MsG0180004184.01 | MsG0880045612.01 | 0.830209 | 3.340540e-55 | 3.496484e-52 |
| MsG0180004184.01 | MsG0880045647.01 | 0.818118 | 2.316332e-52 | 1.718592e-49 |
| MsG0180004184.01 | MsG0880046904.01 | 0.844952 | 5.494546e-59 | 9.015993e-56 |
| MsG0180004184.01 | MsG0880046906.01 | 0.836715 | 7.956304e-57 | 1.011033e-53 |
| MsG0180004184.01 | MsG0880047311.01 | 0.813016 | 3.168039e-51 | 2.045285e-48 |
| MsG0180004184.01 | MsG0880047649.01 | 0.845863 | 3.113472e-59 | 5.260967e-56 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004184.01.T02 | MTR_1g076700 | 97.849 | 93 | 2 | 0 | 1 | 93 | 1 | 93 | 2.52e-59 | 193 |
| MsG0180004184.01.T02 | MTR_6g061690 | 79.787 | 94 | 18 | 1 | 1 | 93 | 1 | 94 | 9.91e-45 | 153 |
| MsG0180004184.01.T02 | MTR_5g093860 | 61.842 | 76 | 29 | 0 | 12 | 87 | 12 | 87 | 2.86e-27 | 103 |
| MsG0180004184.01.T02 | MTR_3g085440 | 57.143 | 77 | 33 | 0 | 13 | 89 | 17 | 93 | 1.04e-25 | 99.0 |
| MsG0180004184.01.T02 | MTR_3g085440 | 57.143 | 77 | 33 | 0 | 13 | 89 | 17 | 93 | 1.78e-25 | 99.0 |
| MsG0180004184.01.T02 | MTR_7g075220 | 51.724 | 87 | 42 | 0 | 1 | 87 | 311 | 397 | 5.18e-25 | 97.4 |
| MsG0180004184.01.T02 | MTR_8g041400 | 53.012 | 83 | 39 | 0 | 9 | 91 | 8 | 90 | 1.17e-24 | 96.7 |
| MsG0180004184.01.T02 | MTR_1g038840 | 57.534 | 73 | 31 | 0 | 14 | 86 | 15 | 87 | 1.60e-23 | 93.2 |
| MsG0180004184.01.T02 | MTR_4g077600 | 77.778 | 54 | 12 | 0 | 24 | 77 | 185 | 238 | 6.04e-22 | 86.3 |
| MsG0180004184.01.T02 | MTR_8g023220 | 46.988 | 83 | 42 | 2 | 9 | 89 | 8 | 90 | 1.68e-16 | 73.2 |
| MsG0180004184.01.T02 | MTR_1g038840 | 55.319 | 47 | 21 | 0 | 40 | 86 | 1 | 47 | 9.54e-11 | 57.0 |
| MsG0180004184.01.T01 | MTR_1g076700 | 97.849 | 93 | 2 | 0 | 1 | 93 | 1 | 93 | 2.52e-59 | 193 |
| MsG0180004184.01.T01 | MTR_6g061690 | 79.787 | 94 | 18 | 1 | 1 | 93 | 1 | 94 | 9.91e-45 | 153 |
| MsG0180004184.01.T01 | MTR_5g093860 | 61.842 | 76 | 29 | 0 | 12 | 87 | 12 | 87 | 2.86e-27 | 103 |
| MsG0180004184.01.T01 | MTR_3g085440 | 57.143 | 77 | 33 | 0 | 13 | 89 | 17 | 93 | 1.04e-25 | 99.0 |
| MsG0180004184.01.T01 | MTR_3g085440 | 57.143 | 77 | 33 | 0 | 13 | 89 | 17 | 93 | 1.78e-25 | 99.0 |
| MsG0180004184.01.T01 | MTR_7g075220 | 51.724 | 87 | 42 | 0 | 1 | 87 | 311 | 397 | 5.18e-25 | 97.4 |
| MsG0180004184.01.T01 | MTR_8g041400 | 53.012 | 83 | 39 | 0 | 9 | 91 | 8 | 90 | 1.17e-24 | 96.7 |
| MsG0180004184.01.T01 | MTR_1g038840 | 57.534 | 73 | 31 | 0 | 14 | 86 | 15 | 87 | 1.60e-23 | 93.2 |
| MsG0180004184.01.T01 | MTR_4g077600 | 77.778 | 54 | 12 | 0 | 24 | 77 | 185 | 238 | 6.04e-22 | 86.3 |
| MsG0180004184.01.T01 | MTR_8g023220 | 46.988 | 83 | 42 | 2 | 9 | 89 | 8 | 90 | 1.68e-16 | 73.2 |
| MsG0180004184.01.T01 | MTR_1g038840 | 55.319 | 47 | 21 | 0 | 40 | 86 | 1 | 47 | 9.54e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004184.01.T02 | AT5G51600 | 81.720 | 93 | 17 | 0 | 1 | 93 | 1 | 93 | 1.68e-40 | 141 |
| MsG0180004184.01.T02 | AT5G55230 | 52.564 | 78 | 37 | 0 | 12 | 89 | 12 | 89 | 1.18e-24 | 96.7 |
| MsG0180004184.01.T02 | AT5G55230 | 52.564 | 78 | 37 | 0 | 12 | 89 | 12 | 89 | 1.31e-24 | 96.3 |
| MsG0180004184.01.T02 | AT5G55230 | 52.564 | 78 | 37 | 0 | 12 | 89 | 12 | 89 | 1.31e-24 | 96.3 |
| MsG0180004184.01.T02 | AT1G14690 | 54.667 | 75 | 34 | 0 | 11 | 85 | 13 | 87 | 4.71e-24 | 94.7 |
| MsG0180004184.01.T02 | AT1G14690 | 54.667 | 75 | 34 | 0 | 11 | 85 | 13 | 87 | 4.71e-24 | 94.7 |
| MsG0180004184.01.T02 | AT1G27920 | 55.000 | 80 | 36 | 0 | 10 | 89 | 14 | 93 | 9.18e-24 | 93.6 |
| MsG0180004184.01.T02 | AT1G27920 | 55.844 | 77 | 34 | 0 | 13 | 89 | 17 | 93 | 1.29e-23 | 93.6 |
| MsG0180004184.01.T02 | AT4G26760 | 51.316 | 76 | 37 | 0 | 12 | 87 | 12 | 87 | 7.87e-23 | 91.3 |
| MsG0180004184.01.T02 | AT2G01910 | 54.667 | 75 | 34 | 0 | 11 | 85 | 13 | 87 | 4.88e-22 | 89.4 |
| MsG0180004184.01.T02 | AT2G38720 | 55.072 | 69 | 31 | 0 | 19 | 87 | 12 | 80 | 1.88e-21 | 87.4 |
| MsG0180004184.01.T02 | AT3G60840 | 50.000 | 82 | 41 | 0 | 9 | 90 | 9 | 90 | 2.32e-21 | 87.4 |
| MsG0180004184.01.T02 | AT5G62250 | 50.000 | 80 | 40 | 0 | 10 | 89 | 4 | 83 | 2.31e-13 | 64.3 |
| MsG0180004184.01.T02 | AT5G62250 | 50.000 | 80 | 40 | 0 | 10 | 89 | 4 | 83 | 2.31e-13 | 64.3 |
| MsG0180004184.01.T01 | AT5G51600 | 81.720 | 93 | 17 | 0 | 1 | 93 | 1 | 93 | 1.68e-40 | 141 |
| MsG0180004184.01.T01 | AT5G55230 | 52.564 | 78 | 37 | 0 | 12 | 89 | 12 | 89 | 1.18e-24 | 96.7 |
| MsG0180004184.01.T01 | AT5G55230 | 52.564 | 78 | 37 | 0 | 12 | 89 | 12 | 89 | 1.31e-24 | 96.3 |
| MsG0180004184.01.T01 | AT5G55230 | 52.564 | 78 | 37 | 0 | 12 | 89 | 12 | 89 | 1.31e-24 | 96.3 |
| MsG0180004184.01.T01 | AT1G14690 | 54.667 | 75 | 34 | 0 | 11 | 85 | 13 | 87 | 4.71e-24 | 94.7 |
| MsG0180004184.01.T01 | AT1G14690 | 54.667 | 75 | 34 | 0 | 11 | 85 | 13 | 87 | 4.71e-24 | 94.7 |
| MsG0180004184.01.T01 | AT1G27920 | 55.000 | 80 | 36 | 0 | 10 | 89 | 14 | 93 | 9.18e-24 | 93.6 |
| MsG0180004184.01.T01 | AT1G27920 | 55.844 | 77 | 34 | 0 | 13 | 89 | 17 | 93 | 1.29e-23 | 93.6 |
| MsG0180004184.01.T01 | AT4G26760 | 51.316 | 76 | 37 | 0 | 12 | 87 | 12 | 87 | 7.87e-23 | 91.3 |
| MsG0180004184.01.T01 | AT2G01910 | 54.667 | 75 | 34 | 0 | 11 | 85 | 13 | 87 | 4.88e-22 | 89.4 |
| MsG0180004184.01.T01 | AT2G38720 | 55.072 | 69 | 31 | 0 | 19 | 87 | 12 | 80 | 1.88e-21 | 87.4 |
| MsG0180004184.01.T01 | AT3G60840 | 50.000 | 82 | 41 | 0 | 9 | 90 | 9 | 90 | 2.32e-21 | 87.4 |
| MsG0180004184.01.T01 | AT5G62250 | 50.000 | 80 | 40 | 0 | 10 | 89 | 4 | 83 | 2.31e-13 | 64.3 |
| MsG0180004184.01.T01 | AT5G62250 | 50.000 | 80 | 40 | 0 | 10 | 89 | 4 | 83 | 2.31e-13 | 64.3 |
Find 2 sgRNAs with CRISPR-Local
Find 48 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCATTTCTTTCCTAAAT+AGG | 0.174626 | 1:+74642018 | MsG0180004184.01.T01:five_prime_UTR |
| CGAAATGTACTGACCTATTT+AGG | 0.223066 | 1:-74642031 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTAAATAAATTGAATTTA+GGG | + | Chr1:74642266-74642285 | MsG0180004184.01.T01:intron | 10.0% |
| !! | TAGTTAAATAAATTGAATTT+AGG | + | Chr1:74642265-74642284 | MsG0180004184.01.T01:intron | 10.0% |
| !!! | AATTCATTTTTTAACAATTT+AGG | + | Chr1:74642229-74642248 | MsG0180004184.01.T01:intron | 10.0% |
| !!! | ATTCATTTTTTAACAATTTA+GGG | + | Chr1:74642230-74642249 | MsG0180004184.01.T01:intron | 10.0% |
| !! | AAATAGAAAGTTTGTATAAA+AGG | - | Chr1:74642105-74642124 | None:intergenic | 15.0% |
| !! | ACTTGTTTATTAGATAATTT+GGG | + | Chr1:74642579-74642598 | MsG0180004184.01.T01:intron | 15.0% |
| !!! | AACTTGTTTATTAGATAATT+TGG | + | Chr1:74642578-74642597 | MsG0180004184.01.T01:intron | 15.0% |
| !! | AATGAATTGTAACTCAAATT+TGG | - | Chr1:74642217-74642236 | None:intergenic | 20.0% |
| !! | ATGAATTGTAACTCAAATTT+GGG | - | Chr1:74642216-74642235 | None:intergenic | 20.0% |
| !!! | CTTTTTCCTTAAAACTAAAA+CGG | + | Chr1:74641895-74641914 | MsG0180004184.01.T01:five_prime_UTR | 20.0% |
| ! | TCTTCATTTCTTTCCTAAAT+AGG | + | Chr1:74642018-74642037 | MsG0180004184.01.T01:five_prime_UTR | 25.0% |
| ! | TGAATATAGTTAAGATTCGT+GGG | - | Chr1:74642068-74642087 | None:intergenic | 25.0% |
| ! | TGAATTGTAACTCAAATTTG+GGG | - | Chr1:74642215-74642234 | None:intergenic | 25.0% |
| ! | TTGAATATAGTTAAGATTCG+TGG | - | Chr1:74642069-74642088 | None:intergenic | 25.0% |
| !!! | AATTTTGAAGTGATTGTGTT+TGG | + | Chr1:74642386-74642405 | MsG0180004184.01.T01:intron | 25.0% |
| !!! | CGTTTTAGTTTTAAGGAAAA+AGG | - | Chr1:74641897-74641916 | None:intergenic | 25.0% |
| AATTGTAACTCAAATTTGGG+GGG | - | Chr1:74642213-74642232 | None:intergenic | 30.0% | |
| ACACATTTAAGCGATTAAAG+AGG | - | Chr1:74642327-74642346 | None:intergenic | 30.0% | |
| CTTTAATCGCTTAAATGTGT+TGG | + | Chr1:74642327-74642346 | MsG0180004184.01.T01:intron | 30.0% | |
| GAATTGTAACTCAAATTTGG+GGG | - | Chr1:74642214-74642233 | None:intergenic | 30.0% | |
| TAATGTGTGATTGAGAGAAA+TGG | - | Chr1:74642166-74642185 | None:intergenic | 30.0% | |
| ! | ATAAGTCTAGAGCTCAATTA+AGG | + | Chr1:74642698-74642717 | MsG0180004184.01.T01:CDS | 30.0% |
| !!! | ATGTAGCCGTTTTAGTTTTA+AGG | - | Chr1:74641904-74641923 | None:intergenic | 30.0% |
| AAGAGATCCACAAGTTGTTT+CGG | - | Chr1:74642452-74642471 | None:intergenic | 35.0% | |
| ATCTCTTCTGTATGAACTTC+AGG | + | Chr1:74642465-74642484 | MsG0180004184.01.T01:CDS | 35.0% | |
| CAATCACTTCAAAATTCAGC+TGG | - | Chr1:74642382-74642401 | None:intergenic | 35.0% | |
| GTACTAACATAGATCTTAGC+TGG | - | Chr1:74642144-74642163 | None:intergenic | 35.0% | |
| ! | CGAAATGTACTGACCTATTT+AGG | - | Chr1:74642034-74642053 | None:intergenic | 35.0% |
| ! | TAGATAATTTGGGACGAAGT+TGG | + | Chr1:74642589-74642608 | MsG0180004184.01.T01:intron | 35.0% |
| AACAGCATTCTGTCTCTATC+AGG | - | Chr1:74642625-74642644 | None:intergenic | 40.0% | |
| ATAACCTGTCTAATGTGCAC+AGG | - | Chr1:74642784-74642803 | None:intergenic | 40.0% | |
| TTAAGATTCGTGGGAATCTG+AGG | - | Chr1:74642059-74642078 | None:intergenic | 40.0% | |
| AGTGTCTTGAAGTGTACCGA+AGG | + | Chr1:74642659-74642678 | MsG0180004184.01.T01:CDS | 45.0% | |
| GCAGCTATCTGTTCTGCAAT+GGG | + | Chr1:74642751-74642770 | MsG0180004184.01.T01:CDS | 45.0% | |
| TCTTGAAGTGTACCGAAGGA+AGG | + | Chr1:74642663-74642682 | MsG0180004184.01.T01:CDS | 45.0% | |
| TGCAGCTATCTGTTCTGCAA+TGG | + | Chr1:74642750-74642769 | MsG0180004184.01.T01:CDS | 45.0% | |
| ! | AAGTTGTTTCGGCTTGCGAA+AGG | - | Chr1:74642441-74642460 | None:intergenic | 45.0% |
| ! | AGTTGTTTCGGCTTGCGAAA+GGG | - | Chr1:74642440-74642459 | None:intergenic | 45.0% |
| ! | GTCTAGAGCTCAATTAAGGC+AGG | + | Chr1:74642702-74642721 | MsG0180004184.01.T01:CDS | 45.0% |
| GTACCGAAGGAAGGTAGATC+AGG | + | Chr1:74642672-74642691 | MsG0180004184.01.T01:CDS | 50.0% | |
| TCGCAAGCCGAAACAACTTG+TGG | + | Chr1:74642442-74642461 | MsG0180004184.01.T01:CDS | 50.0% | |
| TCGCCTGATCTACCTTCCTT+CGG | - | Chr1:74642678-74642697 | None:intergenic | 50.0% | |
| ! | AATTTGGGACGAAGTTGGCG+AGG | + | Chr1:74642594-74642613 | MsG0180004184.01.T01:CDS | 50.0% |
| ! | GTTGTTTCGGCTTGCGAAAG+GGG | - | Chr1:74642439-74642458 | None:intergenic | 50.0% |
| ! | TGCGAAAGGGGATCGTTTTG+AGG | - | Chr1:74642427-74642446 | None:intergenic | 50.0% |
| GCGACCTGTGCACATTAGAC+AGG | + | Chr1:74642777-74642796 | MsG0180004184.01.T01:CDS | 55.0% | |
| ! | GCAGGCGATTGCTGATTGTG+AGG | + | Chr1:74642720-74642739 | MsG0180004184.01.T01:CDS | 55.0% |
| ! | GGCGATTGCTGATTGTGAGG+CGG | + | Chr1:74642723-74642742 | MsG0180004184.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 74641869 | 74642810 | 74641869 | ID=MsG0180004184.01;Name=MsG0180004184.01 |
| Chr1 | mRNA | 74641869 | 74642810 | 74641869 | ID=MsG0180004184.01.T01;Parent=MsG0180004184.01;Name=MsG0180004184.01.T01;_AED=0.49;_eAED=0.50;_QI=184|1|0.66|1|0.5|0.33|3|0|96 |
| Chr1 | exon | 74641869 | 74642049 | 74641869 | ID=MsG0180004184.01.T01:exon:5620;Parent=MsG0180004184.01.T01 |
| Chr1 | five_prime_UTR | 74641869 | 74642049 | 74641869 | ID=MsG0180004184.01.T01:five_prime_utr;Parent=MsG0180004184.01.T01 |
| Chr1 | five_prime_UTR | 74642412 | 74642414 | 74642412 | ID=MsG0180004184.01.T01:five_prime_utr;Parent=MsG0180004184.01.T01 |
| Chr1 | CDS | 74642415 | 74642486 | 74642415 | ID=MsG0180004184.01.T01:cds;Parent=MsG0180004184.01.T01 |
| Chr1 | CDS | 74642592 | 74642810 | 74642592 | ID=MsG0180004184.01.T01:cds;Parent=MsG0180004184.01.T01 |
| Chr1 | mRNA | 74641935 | 74642810 | 74641935 | ID=MsG0180004184.01.T02;Parent=MsG0180004184.01;Name=MsG0180004184.01.T02;_AED=0.49;_eAED=0.50;_QI=108|1|0.66|1|0.5|0.33|3|0|96 |
| Chr1 | exon | 74641935 | 74642039 | 74641935 | ID=MsG0180004184.01.T02:exon:5623;Parent=MsG0180004184.01.T02 |
| Chr1 | five_prime_UTR | 74641935 | 74642039 | 74641935 | ID=MsG0180004184.01.T02:five_prime_utr;Parent=MsG0180004184.01.T02 |
| Chr1 | five_prime_UTR | 74642412 | 74642414 | 74642412 | ID=MsG0180004184.01.T02:five_prime_utr;Parent=MsG0180004184.01.T02 |
| Chr1 | CDS | 74642415 | 74642486 | 74642415 | ID=MsG0180004184.01.T02:cds;Parent=MsG0180004184.01.T02 |
| Chr1 | CDS | 74642592 | 74642810 | 74642592 | ID=MsG0180004184.01.T02:cds;Parent=MsG0180004184.01.T02 |
| Gene Sequence |
| Protein sequence |
