AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029123.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029123.01.T01 MTR_5g081410 83.910 491 18 2 1 430 85 575 0.0 830
MsG0580029123.01.T01 MTR_3g069590 65.121 496 99 9 1 427 103 593 0.0 606
MsG0580029123.01.T01 MTR_7g065220 55.699 465 140 4 1 403 187 647 4.02e-176 508
MsG0580029123.01.T01 MTR_3g069590 67.391 322 60 1 1 277 103 424 1.15e-153 442
MsG0580029123.01.T01 MTR_4g019770 57.662 385 98 3 1 324 99 479 5.85e-146 427
MsG0580029123.01.T01 MTR_4g075640 45.946 481 171 9 1 413 90 549 4.82e-122 366
MsG0580029123.01.T01 MTR_8g030850 47.059 374 116 6 1 300 100 465 3.45e-99 305
MsG0580029123.01.T01 MTR_6g087700 41.902 389 137 9 1 319 99 468 1.97e-90 284
MsG0580029123.01.T01 MTR_2g101830 40.166 361 136 6 2 300 90 432 4.26e-81 259
MsG0580029123.01.T01 MTR_5g025960 38.889 360 149 4 2 300 122 471 6.08e-77 249
MsG0580029123.01.T01 MTR_4g013165 35.737 319 123 6 49 305 1 299 1.35e-59 200
MsG0580029123.01.T01 MTR_7g077690 61.538 169 65 0 1 169 116 284 1.61e-59 203
MsG0580029123.01.T01 MTR_7g077690 50.000 150 47 4 171 300 383 524 2.95e-33 131
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029123.01.T01 AT5G05940 56.494 462 131 8 1 392 105 566 1.19e-168 487
MsG0580029123.01.T01 AT5G02010 54.705 457 111 9 1 387 73 503 7.54e-161 465
MsG0580029123.01.T01 AT5G05940 59.752 323 83 2 1 276 105 427 1.24e-131 388
MsG0580029123.01.T01 AT3G55660 46.025 478 161 8 1 389 110 579 3.55e-123 370
MsG0580029123.01.T01 AT4G38430 47.677 409 146 6 1 346 93 496 7.02e-120 360
MsG0580029123.01.T01 AT3G55660 51.385 325 106 3 1 277 110 430 3.41e-105 319
MsG0580029123.01.T01 AT4G00460 47.861 374 119 7 2 307 108 473 1.09e-103 316
MsG0580029123.01.T01 AT4G00460 47.861 374 119 7 2 307 108 473 1.09e-103 316
MsG0580029123.01.T01 AT1G01700 48.774 367 112 8 2 300 120 478 9.46e-100 306
MsG0580029123.01.T01 AT1G01700 45.088 397 112 9 2 300 120 508 3.37e-93 290
MsG0580029123.01.T01 AT3G24620 41.758 364 131 6 1 302 88 432 7.36e-90 282
MsG0580029123.01.T01 AT2G45890 42.593 378 135 8 1 307 96 462 6.64e-87 273
MsG0580029123.01.T01 AT4G13240 40.164 366 138 6 1 304 77 423 6.83e-85 269
MsG0580029123.01.T01 AT1G01700 46.108 334 113 8 2 276 120 445 2.67e-82 261
MsG0580029123.01.T01 AT4G00460 43.402 341 117 7 35 307 8 340 9.08e-82 255
MsG0580029123.01.T01 AT1G52240 40.984 366 132 7 2 305 108 451 2.95e-80 258
MsG0580029123.01.T01 AT1G79860 39.058 361 138 7 2 300 96 436 1.97e-79 255
MsG0580029123.01.T01 AT3G16130 39.617 366 142 7 2 305 94 442 4.29e-78 252
MsG0580029123.01.T01 AT5G19560 39.071 366 144 7 1 304 47 395 5.29e-76 245
MsG0580029123.01.T01 AT5G19560 39.071 366 144 7 1 304 47 395 5.29e-76 245
MsG0580029123.01.T01 AT5G19560 39.071 366 144 7 1 304 66 414 1.32e-75 245
MsG0580029123.01.T01 AT1G31650 36.141 368 155 5 2 303 112 465 1.14e-72 238
MsG0580029123.01.T01 AT1G31650 36.141 368 155 5 2 303 140 493 2.75e-72 238
MsG0580029123.01.T01 AT5G19560 38.509 322 135 6 1 276 66 370 8.02e-66 216
MsG0580029123.01.T01 AT4G00460 62.275 167 60 2 2 165 108 274 4.02e-63 207
MsG0580029123.01.T01 AT1G01700 61.176 170 63 2 2 168 120 289 7.51e-62 205
MsG0580029123.01.T01 AT1G01700 61.176 170 63 2 2 168 120 289 7.51e-62 205
MsG0580029123.01.T01 AT5G19560 33.453 278 106 7 89 304 5 265 1.48e-38 143

Find 99 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACATGGTTTCACAGAAAA+AGG 0.190047 5:-92558269 MsG0580029123.01.T01:CDS
TTCATCTGATTTGCTGCATT+TGG 0.225466 5:+92562825 None:intergenic
GGTCTTCTTCATTTCCTATT+AGG 0.236635 5:-92562861 MsG0580029123.01.T01:five_prime_UTR
ACTCAACACAAAGCAAAATT+TGG 0.247443 5:-92558214 MsG0580029123.01.T01:CDS
TCTTGAGTAGCTTTCTAGTA+TGG 0.255785 5:+92558396 None:intergenic
CAACATGTAGGAACTGTATT+TGG 0.265120 5:-92561370 MsG0580029123.01.T01:intron
AAACCTCAACGTCGCGGTTT+TGG 0.279389 5:-92558103 MsG0580029123.01.T01:CDS
TTGTTGAGTTAATGCCTTCT+TGG 0.293497 5:-92561258 MsG0580029123.01.T01:CDS
TTGTTATTGTTGTGGATAAA+AGG 0.311337 5:+92558136 None:intergenic
GCAGGAGGCACACGGGGTAC+TGG 0.311400 5:+92559361 None:intergenic
GTTCCACTGCTATGGAGTTT+TGG 0.317284 5:-92559474 MsG0580029123.01.T01:CDS
GAACTGTATTTGGACAATTA+TGG 0.318046 5:-92561360 MsG0580029123.01.T01:CDS
GGACATTGTGAAGGACTTAA+TGG 0.321625 5:-92558799 MsG0580029123.01.T01:CDS
AGAAAGCTACTCAAGAGTTT+TGG 0.328969 5:-92558389 MsG0580029123.01.T01:CDS
TGGAAATCTATCTGAATGTT+TGG 0.339488 5:+92558306 None:intergenic
GACATAGTGCCCTTCCTAAT+AGG 0.352007 5:+92562847 None:intergenic
TTCATTGAAGCAGCGCTTCC+CGG 0.375503 5:-92558724 MsG0580029123.01.T01:intron
TTATCATCAACTTGAGAAAC+AGG 0.378270 5:+92562791 None:intergenic
AGAAAAGTGGCAGAGAGAAA+TGG 0.381993 5:-92561308 MsG0580029123.01.T01:CDS
AGAGTGTTGTCAAATTATCT+TGG 0.399409 5:-92558073 MsG0580029123.01.T01:CDS
TTTGTTACTCAAAACACAAA+AGG 0.408543 5:+92563015 None:intergenic
CATCTGGTGCCACAATTCCT+TGG 0.414903 5:+92559443 None:intergenic
CTGATTTCTCTTGCGAAAAG+AGG 0.416366 5:+92559408 None:intergenic
CTCAAGTGCAACATGCTCAT+TGG 0.420115 5:+92558920 None:intergenic
CATAAATTGCGGCTTCTAAA+CGG 0.424426 5:+92558889 None:intergenic
GTTACATGTGTTAATGAGTT+CGG 0.427398 5:+92563091 None:intergenic
CCCTTTGAAGGACTAATTAG+TGG 0.432878 5:+92558169 None:intergenic
TAGAAGCCGCAATTTATGTA+TGG 0.441628 5:-92558884 MsG0580029123.01.T01:CDS
TTTAGATAGTTCCACTGCTA+TGG 0.442885 5:-92559482 MsG0580029123.01.T01:CDS
GTGAAGGACTTAATGGTTGA+TGG 0.444547 5:-92558792 MsG0580029123.01.T01:CDS
GGAGTTACCTCTCCCTTTGA+AGG 0.445840 5:+92558157 None:intergenic
CAGGAGGCACACGGGGTACT+GGG 0.446468 5:+92559362 None:intergenic
TCAGGATATGTTTGCCAAGA+AGG 0.453625 5:+92561244 None:intergenic
TCAAAACACAAAAGGGTTAG+TGG 0.457781 5:+92563023 None:intergenic
AAAAGGAGTTAGCACTGCTT+TGG 0.462316 5:-92562525 MsG0580029123.01.T01:CDS
TGTGAAACCATGTTAACCAT+TGG 0.466695 5:+92558277 None:intergenic
GAGGCTGATCCATCTGCATC+TGG 0.467719 5:+92559427 None:intergenic
GCAAGCACTCTTGAGAGAAC+TGG 0.473659 5:+92558961 None:intergenic
CTGCTTGGTGAAGATATGTC+AGG 0.475560 5:-92562554 MsG0580029123.01.T01:CDS
GTAACAAAATCAAAGCTTGT+TGG 0.477756 5:-92563000 MsG0580029123.01.T01:five_prime_UTR
TAGATTTCCATTGGCTCCAA+TGG 0.482149 5:-92558293 MsG0580029123.01.T01:CDS
TTCTTCATTTCCTATTAGGA+AGG 0.485913 5:-92562857 MsG0580029123.01.T01:five_prime_UTR
AATGGGTCTTGTAGTTCCAC+TGG 0.490578 5:-92562927 MsG0580029123.01.T01:five_prime_UTR
GTTCGACTACAAAGTCATCC+TGG 0.490964 5:-92558821 MsG0580029123.01.T01:CDS
GGTGAAGATATGTCAGGGTC+TGG 0.491025 5:-92562548 MsG0580029123.01.T01:CDS
GTACCCCGTGTGCCTCCTGC+CGG 0.499229 5:-92559358 MsG0580029123.01.T01:CDS
TTGTTACTCAAAACACAAAA+GGG 0.500795 5:+92563016 None:intergenic
TCAGAATGGAAGAACGTGCT+TGG 0.503039 5:-92559014 MsG0580029123.01.T01:intron
TTGTCGAGTTTACGTAGAGC+TGG 0.504038 5:+92559612 None:intergenic
TGATATTGTTGTTATTGTTG+TGG 0.506831 5:+92558128 None:intergenic
ACATTCAGATAGATTTCCAT+TGG 0.512184 5:-92558302 MsG0580029123.01.T01:CDS
GATATGTCAGGGTCTGGAAA+AGG 0.513629 5:-92562542 MsG0580029123.01.T01:CDS
ACCTCTAGCTTACTACCATC+AGG 0.519299 5:+92561226 None:intergenic
TCTTGAGTTCTCACTGAGAC+CGG 0.521027 5:+92559339 None:intergenic
ACACCAAAACCGCGACGTTG+AGG 0.531446 5:+92558100 None:intergenic
GAGTTCTCACTGAGACCGGC+AGG 0.534877 5:+92559343 None:intergenic
ATCAGCGGCAAGAGGAGAAG+TGG 0.535708 5:-92559390 MsG0580029123.01.T01:CDS
ATGTTAACCATTGGAGCCAA+TGG 0.540862 5:+92558286 None:intergenic
ATCAGGAGGAGATATGATGA+AGG 0.541951 5:-92562594 MsG0580029123.01.T01:exon
GCCACTAATTAGTCCTTCAA+AGG 0.542594 5:-92558170 MsG0580029123.01.T01:CDS
GTGTTGTCAAATTATCTTGG+AGG 0.544230 5:-92558070 MsG0580029123.01.T01:CDS
ATGGATTGGCTTCTTTGTGT+TGG 0.544302 5:-92561289 MsG0580029123.01.T01:CDS
TCTTCATTTCCTATTAGGAA+GGG 0.555428 5:-92562856 MsG0580029123.01.T01:five_prime_UTR
ACTTTGTAGTCGAACGGCTA+GGG 0.555981 5:+92558829 None:intergenic
CCACTAATTAGTCCTTCAAA+GGG 0.557284 5:-92558169 MsG0580029123.01.T01:CDS
AATTAGTCCTTCAAAGGGAG+AGG 0.557362 5:-92558164 MsG0580029123.01.T01:CDS
GAGGAGATATGATGAAGGAA+AGG 0.559995 5:-92562589 MsG0580029123.01.T01:exon
GTGGTTTAGAGTGAGATCTC+TGG 0.563305 5:+92558859 None:intergenic
GACTTTGTAGTCGAACGGCT+AGG 0.567248 5:+92558828 None:intergenic
ATTGGCTCCAATGGTTAACA+TGG 0.571176 5:-92558284 MsG0580029123.01.T01:CDS
AGTGGCAGAGAGAAATGGAT+TGG 0.572062 5:-92561303 MsG0580029123.01.T01:CDS
TTTGACTTTGTAGGATCAGG+AGG 0.572328 5:-92562608 MsG0580029123.01.T01:intron
TAAGTCCTTCACAATGTCCC+AGG 0.572863 5:+92558803 None:intergenic
GAAGGACTAATTAGTGGCAC+AGG 0.574721 5:+92558175 None:intergenic
TGAGACCGGCAGGAGGCACA+CGG 0.577679 5:+92559353 None:intergenic
CATGTGAAAAGAAAGAAAAG+TGG 0.581474 5:-92561321 MsG0580029123.01.T01:CDS
AGGTTTGCGAAGTTACTGCT+TGG 0.585242 5:-92562569 MsG0580029123.01.T01:CDS
TTCGACTACAAAGTCATCCT+GGG 0.585548 5:-92558820 MsG0580029123.01.T01:CDS
GAGACCGGCAGGAGGCACAC+GGG 0.597490 5:+92559354 None:intergenic
CAAGAGAAATCAGCGGCAAG+AGG 0.598859 5:-92559398 MsG0580029123.01.T01:CDS
AATGCTATTACTAATTTGTG+TGG 0.601531 5:-92562494 MsG0580029123.01.T01:intron
GTATGTTGACCAAGGAATTG+TGG 0.604214 5:-92559452 MsG0580029123.01.T01:CDS
GTCATCCTGGGACATTGTGA+AGG 0.614434 5:-92558808 MsG0580029123.01.T01:CDS
TGCTTGGTGAAGATATGTCA+GGG 0.618748 5:-92562553 MsG0580029123.01.T01:CDS
CTGGCGCCATACATAAATTG+CGG 0.627878 5:+92558878 None:intergenic
TCCTGATGGTAGTAAGCTAG+AGG 0.628089 5:-92561227 MsG0580029123.01.T01:intron
TCTTGGCAAACATATCCTGA+TGG 0.629177 5:-92561241 MsG0580029123.01.T01:CDS
AGGATGACTTTGTAGTCGAA+CGG 0.629366 5:+92558823 None:intergenic
ATACCAAAACTCCATAGCAG+TGG 0.634242 5:+92559471 None:intergenic
ATCTGAGCAACACGATCCAG+TGG 0.638385 5:+92562911 None:intergenic
ATCATTAAACCTCAACGTCG+CGG 0.638867 5:-92558109 MsG0580029123.01.T01:CDS
AGACCGGCAGGAGGCACACG+GGG 0.642385 5:+92559355 None:intergenic
GTCGAACGGCTAGGGTAGAG+TGG 0.643760 5:+92558837 None:intergenic
ATTGTGGCACCAGATGCAGA+TGG 0.645033 5:-92559436 MsG0580029123.01.T01:CDS
AGCGGCAAGAGGAGAAGTGG+TGG 0.645482 5:-92559387 MsG0580029123.01.T01:CDS
TTCTCACTGAGACCGGCAGG+AGG 0.665518 5:+92559346 None:intergenic
GCACTCTTGAGAGAACTGGT+CGG 0.681945 5:+92558965 None:intergenic
GAACGGCTAGGGTAGAGTGG+TGG 0.690009 5:+92558840 None:intergenic
AAGACAAATGATGATGTGTG+AGG 0.756552 5:-92557929 MsG0580029123.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAGCTAATATAAAAATT+TGG + Chr5:92558738-92558757 None:intergenic 10.0%
!! ACATATACAATTAAAATTTA+TGG + Chr5:92559120-92559139 None:intergenic 10.0%
!! AGAAATAAATAAAAACAAAT+TGG - Chr5:92560595-92560614 MsG0580029123.01.T01:intron 10.0%
!! CATATACAATTAAAATTTAT+GGG + Chr5:92559119-92559138 None:intergenic 10.0%
!! TTATTCATAAAAATTTATGA+TGG + Chr5:92560527-92560546 None:intergenic 10.0%
!!! AATTTTTATGAATAAAAAAG+AGG - Chr5:92560532-92560551 MsG0580029123.01.T01:intron 10.0%
!!! ATTTTTTTTTTCTTTTTTGA+AGG - Chr5:92558587-92558606 MsG0580029123.01.T01:intron 10.0%
!!! CTAAAAACTTTTTTTTTTTT+AGG + Chr5:92558674-92558693 None:intergenic 10.0%
!!! TTATATTAGCTAATTTTTTT+GGG - Chr5:92558743-92558762 MsG0580029123.01.T01:CDS 10.0%
!!! TTTATATTAGCTAATTTTTT+TGG - Chr5:92558742-92558761 MsG0580029123.01.T01:CDS 10.0%
!! CTTTAAACATGTTATAATTA+TGG + Chr5:92560370-92560389 None:intergenic 15.0%
!! TAATAACAAATTTCAAAAGT+TGG - Chr5:92559019-92559038 MsG0580029123.01.T01:intron 15.0%
!! TTCAACAAAGATTAATAAAT+AGG - Chr5:92559810-92559829 MsG0580029123.01.T01:intron 15.0%
!!! AATTTTCAAAAGAGAAAAAA+TGG - Chr5:92558021-92558040 MsG0580029123.01.T01:CDS 15.0%
!!! ATTTTCAAAAGAGAAAAAAT+GGG - Chr5:92558022-92558041 MsG0580029123.01.T01:CDS 15.0%
!!! GATTAAAATTTATCAGTTTT+TGG - Chr5:92559074-92559093 MsG0580029123.01.T01:intron 15.0%
!!! TAAATTTTAATCTCTTTGTA+TGG + Chr5:92559066-92559085 None:intergenic 15.0%
!! ACATTAAACTCACATATATA+AGG + Chr5:92559786-92559805 None:intergenic 20.0%
!! ATTGTTGATACTATATAATC+TGG - Chr5:92561850-92561869 MsG0580029123.01.T01:intron 20.0%
!! TACAAAGTCAAAACATAATA+AGG + Chr5:92558350-92558369 None:intergenic 20.0%
!! TCGTTAAAAAACGATAAAAA+TGG + Chr5:92558992-92559011 None:intergenic 20.0%
!! TGGTGTAAAAACTAAAAAAA+TGG - Chr5:92560571-92560590 MsG0580029123.01.T01:intron 20.0%
!!! AACTAAAATACCATTTTGAT+TGG - Chr5:92560911-92560930 MsG0580029123.01.T01:intron 20.0%
!!! AGTGTAATTTTAAAAGTTTG+AGG - Chr5:92559432-92559451 MsG0580029123.01.T01:CDS 20.0%
!!! ATTTTTTATTCTTCCAATGT+AGG - Chr5:92561398-92561417 MsG0580029123.01.T01:intron 20.0%
!!! GTGTAATTTTAAAAGTTTGA+GGG - Chr5:92559433-92559452 MsG0580029123.01.T01:CDS 20.0%
!!! TGTTTCATTTTAAACATTTC+AGG - Chr5:92562535-92562554 MsG0580029123.01.T01:CDS 20.0%
!!! TTATTATGTTTTGACTTTGT+AGG - Chr5:92558349-92558368 MsG0580029123.01.T01:CDS 20.0%
!!! TTCTTACAATTTGTTCAATT+GGG - Chr5:92559565-92559584 MsG0580029123.01.T01:intron 20.0%
!!! TTGTAACAAATATTGATAGT+AGG - Chr5:92558506-92558525 MsG0580029123.01.T01:intron 20.0%
!!! TTTCTTACAATTTGTTCAAT+TGG - Chr5:92559564-92559583 MsG0580029123.01.T01:intron 20.0%
!!! TTTTAGTTTTTACACCATTT+TGG + Chr5:92560568-92560587 None:intergenic 20.0%
! AAATAAGCTGAAATGGTTTA+TGG + Chr5:92562421-92562440 None:intergenic 25.0%
! ATCATAGAGTTAAAAAACCA+AGG - Chr5:92560703-92560722 MsG0580029123.01.T01:intron 25.0%
! ATGTTAATGTGAAGTTGTTA+GGG + Chr5:92562516-92562535 None:intergenic 25.0%
! CTAAAATTTCCTGTTACATA+GGG + Chr5:92561469-92561488 None:intergenic 25.0%
! CTTATGAAAATAAGCTGAAA+TGG + Chr5:92562428-92562447 None:intergenic 25.0%
! TCATAGAGTTAAAAAACCAA+GGG - Chr5:92560704-92560723 MsG0580029123.01.T01:intron 25.0%
! TCCAAATTTAATTCCTACAT+AGG - Chr5:92560657-92560676 MsG0580029123.01.T01:intron 25.0%
! TTCGTTTGATTGAAATAGAA+CGG - Chr5:92559895-92559914 MsG0580029123.01.T01:intron 25.0%
! TTGATAAAAATGTCTGATCT+TGG + Chr5:92561330-92561349 None:intergenic 25.0%
! TTGTATGGCTTATTATGTAT+TGG + Chr5:92559051-92559070 None:intergenic 25.0%
! TTGTTACTCAAAACACAAAA+GGG + Chr5:92557953-92557972 None:intergenic 25.0%
! TTTGTTACTCAAAACACAAA+AGG + Chr5:92557954-92557973 None:intergenic 25.0%
!! AATGCTATTACTAATTTGTG+TGG - Chr5:92558472-92558491 MsG0580029123.01.T01:intron 25.0%
!! TATTACTAATTTGTGTGGTA+TGG - Chr5:92558477-92558496 MsG0580029123.01.T01:intron 25.0%
!! TCTAAAATTTCCTGTTACAT+AGG + Chr5:92561470-92561489 None:intergenic 25.0%
!! TGATATTGTTGTTATTGTTG+TGG + Chr5:92562841-92562860 None:intergenic 25.0%
!! TGTTAACTTTTCTTGTGTTA+TGG - Chr5:92559525-92559544 MsG0580029123.01.T01:intron 25.0%
!! TTGTTATTGTTGTGGATAAA+AGG + Chr5:92562833-92562852 None:intergenic 25.0%
!! TTTTAAACATTTCAGGATGT+TGG - Chr5:92562542-92562561 MsG0580029123.01.T01:CDS 25.0%
!!! CAAATTTCGAGTTTTCAATT+TGG + Chr5:92560106-92560125 None:intergenic 25.0%
!!! GGTTTTAGAAAATTCAAAAG+TGG + Chr5:92560868-92560887 None:intergenic 25.0%
!!! GTAGTCAAGGTTTTAAAAAA+CGG + Chr5:92561208-92561227 None:intergenic 25.0%
!!! GTATTTTAGTTTGTGAGATT+TGG + Chr5:92560902-92560921 None:intergenic 25.0%
!!! TAGTCAAGGTTTTAAAAAAC+GGG + Chr5:92561207-92561226 None:intergenic 25.0%
AAAGTTCAAACAACGTATCA+TGG + Chr5:92561933-92561952 None:intergenic 30.0%
AACGGTCTATATTTCATGTT+TGG - Chr5:92559913-92559932 MsG0580029123.01.T01:intron 30.0%
AAGTTCAAACAACGTATCAT+GGG + Chr5:92561932-92561951 None:intergenic 30.0%
AATCATACAAAGTAGAGAGT+AGG + Chr5:92559837-92559856 None:intergenic 30.0%
ACATTCAGATAGATTTCCAT+TGG - Chr5:92562664-92562683 MsG0580029123.01.T01:intron 30.0%
ACTCAACACAAAGCAAAATT+TGG - Chr5:92562752-92562771 MsG0580029123.01.T01:intron 30.0%
ACTCTATGATTTAGATCTTG+TGG + Chr5:92560693-92560712 None:intergenic 30.0%
ACTCTCTACTTTGTATGATT+AGG - Chr5:92559837-92559856 MsG0580029123.01.T01:intron 30.0%
AGTATCAGCTCAAAAATTTC+TGG - Chr5:92558208-92558227 MsG0580029123.01.T01:CDS 30.0%
ATCATACAAAGTAGAGAGTA+GGG + Chr5:92559836-92559855 None:intergenic 30.0%
ATTGTATCATCAACAGATCT+TGG - Chr5:92562366-92562385 MsG0580029123.01.T01:intron 30.0%
ATTTCTTTCTCAGCGTTAAA+AGG - Chr5:92561120-92561139 MsG0580029123.01.T01:intron 30.0%
CATGTGAAAAGAAAGAAAAG+TGG - Chr5:92559645-92559664 MsG0580029123.01.T01:CDS 30.0%
CATGTTAATGTGAAGTTGTT+AGG + Chr5:92562517-92562536 None:intergenic 30.0%
CTCTCTACTTTGTATGATTA+GGG - Chr5:92559838-92559857 MsG0580029123.01.T01:intron 30.0%
CTGAACAGCTAAATAGAAAT+TGG - Chr5:92560059-92560078 MsG0580029123.01.T01:intron 30.0%
GAACAAGCAAAAATAGCAAA+AGG - Chr5:92558084-92558103 MsG0580029123.01.T01:CDS 30.0%
GAACTGTATTTGGACAATTA+TGG - Chr5:92559606-92559625 MsG0580029123.01.T01:CDS 30.0%
GCATGAAAATCCAATCAAAA+TGG + Chr5:92560924-92560943 None:intergenic 30.0%
GCCTATGTAGGAATTAAATT+TGG + Chr5:92560661-92560680 None:intergenic 30.0%
GTAACAAAATCAAAGCTTGT+TGG - Chr5:92557966-92557985 MsG0580029123.01.T01:CDS 30.0%
TAACATGGTTTCACAGAAAA+AGG - Chr5:92562697-92562716 MsG0580029123.01.T01:intron 30.0%
TATGTGGAAAATCAAACCTT+AGG + Chr5:92561766-92561785 None:intergenic 30.0%
TCTTCATTTCCTATTAGGAA+GGG - Chr5:92558110-92558129 MsG0580029123.01.T01:CDS 30.0%
TGAAAACACACACATATAAG+TGG - Chr5:92558792-92558811 MsG0580029123.01.T01:CDS 30.0%
TGATACATGATAGAACGTTA+TGG - Chr5:92561882-92561901 MsG0580029123.01.T01:intron 30.0%
TGGAAATCTATCTGAATGTT+TGG + Chr5:92562663-92562682 None:intergenic 30.0%
TTATCATCAACTTGAGAAAC+AGG + Chr5:92558178-92558197 None:intergenic 30.0%
TTCTGTTCTGTTTAGTGTTT+AGG - Chr5:92558253-92558272 MsG0580029123.01.T01:CDS 30.0%
TTCTTCATTTCCTATTAGGA+AGG - Chr5:92558109-92558128 MsG0580029123.01.T01:CDS 30.0%
TTGATCAAAATCAGATGACT+CGG - Chr5:92559961-92559980 MsG0580029123.01.T01:intron 30.0%
TTTCTTTCTCAGCGTTAAAA+GGG - Chr5:92561121-92561140 MsG0580029123.01.T01:intron 30.0%
! AAGATCTCAATCGATTTATG+TGG + Chr5:92561782-92561801 None:intergenic 30.0%
! AATATTGATAGTAGGTTCAG+TGG - Chr5:92558514-92558533 MsG0580029123.01.T01:intron 30.0%
! AATGTAGTTTGACTTAAACC+GGG + Chr5:92562263-92562282 None:intergenic 30.0%
! CAATGTAGTTTGACTTAAAC+CGG + Chr5:92562264-92562283 None:intergenic 30.0%
! CACTTTTCTTTCTTTTCACA+TGG + Chr5:92559647-92559666 None:intergenic 30.0%
!! ACTACCAAGGTTCTAAAAAA+CGG - Chr5:92560173-92560192 MsG0580029123.01.T01:intron 30.0%
!! AGAGTGTTGTCAAATTATCT+TGG - Chr5:92562893-92562912 MsG0580029123.01.T01:five_prime_UTR 30.0%
!! ATCATTTGTCTTGCTTTTCA+TGG + Chr5:92563029-92563048 None:intergenic 30.0%
!! TCAAAGCTTGTTGGTAAAAA+TGG - Chr5:92557975-92557994 MsG0580029123.01.T01:CDS 30.0%
!!! ACTGAATTTTCAAGTCTGAA+CGG - Chr5:92561012-92561031 MsG0580029123.01.T01:intron 30.0%
!!! TAGACACACATTTTGGAATT+TGG - Chr5:92559244-92559263 MsG0580029123.01.T01:intron 30.0%
AAGTGGTAAAGAATGGTCAA+TGG - Chr5:92559221-92559240 MsG0580029123.01.T01:intron 35.0%
AATACAGCTTAAACCTACTC+AGG + Chr5:92559497-92559516 None:intergenic 35.0%
ACACTAAACAGAACAGAACA+TGG + Chr5:92558251-92558270 None:intergenic 35.0%
ACCAATGAAAATTTGACAGC+AGG + Chr5:92560015-92560034 None:intergenic 35.0%
ACTATCAAAGGTAGTAGTCA+AGG + Chr5:92561221-92561240 None:intergenic 35.0%
ATAAAGAGAAGCTTATGCAC+GGG + Chr5:92562463-92562482 None:intergenic 35.0%
ATACAGCTTAAACCTACTCA+GGG + Chr5:92559496-92559515 None:intergenic 35.0%
ATTTAGCTGTTCAGATAGAC+TGG + Chr5:92560053-92560072 None:intergenic 35.0%
CAACATGTAGGAACTGTATT+TGG - Chr5:92559596-92559615 MsG0580029123.01.T01:intron 35.0%
CATAAAGAGAAGCTTATGCA+CGG + Chr5:92562464-92562483 None:intergenic 35.0%
CATAAATTGCGGCTTCTAAA+CGG + Chr5:92562080-92562099 None:intergenic 35.0%
CCACTAATTAGTCCTTCAAA+GGG - Chr5:92562797-92562816 MsG0580029123.01.T01:five_prime_UTR 35.0%
CCCTACTAAATATATGCACA+CGG + Chr5:92561251-92561270 None:intergenic 35.0%
CCGTGTGCATATATTTAGTA+GGG - Chr5:92561248-92561267 MsG0580029123.01.T01:CDS 35.0%
CGGTTTAAGTCAAACTACAT+TGG - Chr5:92562262-92562281 MsG0580029123.01.T01:intron 35.0%
CGTTGTTTGAACTTTCAGAA+TGG - Chr5:92561938-92561957 MsG0580029123.01.T01:intron 35.0%
GCGAAAAATAACACGTACTT+TGG - Chr5:92559196-92559215 MsG0580029123.01.T01:intron 35.0%
GGAAAATCAAACCTTAGGAA+GGG + Chr5:92561761-92561780 None:intergenic 35.0%
GGTAGTAGTAGTACTAGTAA+GGG + Chr5:92560159-92560178 None:intergenic 35.0%
GGTCTTCTTCATTTCCTATT+AGG - Chr5:92558105-92558124 MsG0580029123.01.T01:CDS 35.0%
GTGTTGTCAAATTATCTTGG+AGG - Chr5:92562896-92562915 MsG0580029123.01.T01:five_prime_UTR 35.0%
GTTCTATCATGTATCATGTC+TGG + Chr5:92561878-92561897 None:intergenic 35.0%
TAAATTGAGTCCCTGGTTAT+AGG + Chr5:92559992-92560011 None:intergenic 35.0%
TACTAGTACTACTACTACCA+AGG - Chr5:92560160-92560179 MsG0580029123.01.T01:intron 35.0%
TAGAAGCCGCAATTTATGTA+TGG - Chr5:92562082-92562101 MsG0580029123.01.T01:intron 35.0%
TCAAAACACAAAAGGGTTAG+TGG + Chr5:92557946-92557965 None:intergenic 35.0%
TCCGTGTGCATATATTTAGT+AGG - Chr5:92561247-92561266 MsG0580029123.01.T01:CDS 35.0%
TGGAAAATCAAACCTTAGGA+AGG + Chr5:92561762-92561781 None:intergenic 35.0%
TGGTAGTAGTAGTACTAGTA+AGG + Chr5:92560160-92560179 None:intergenic 35.0%
TGTGAAACCATGTTAACCAT+TGG + Chr5:92562692-92562711 None:intergenic 35.0%
TTCTTTCTCAGCGTTAAAAG+GGG - Chr5:92561122-92561141 MsG0580029123.01.T01:intron 35.0%
TTGTTGAGTTAATGCCTTCT+TGG - Chr5:92559708-92559727 MsG0580029123.01.T01:intron 35.0%
TTTAGATAGTTCCACTGCTA+TGG - Chr5:92561484-92561503 MsG0580029123.01.T01:intron 35.0%
TTTGGCAAAGTGGTAAAGAA+TGG - Chr5:92559214-92559233 MsG0580029123.01.T01:intron 35.0%
! AAGACAAATGATGATGTGTG+AGG - Chr5:92563037-92563056 MsG0580029123.01.T01:five_prime_UTR 35.0%
! AAGGGTGCAGATATGAAAAA+GGG - Chr5:92560722-92560741 MsG0580029123.01.T01:intron 35.0%
! ACCTGCTGTCAAATTTTCAT+TGG - Chr5:92560011-92560030 MsG0580029123.01.T01:intron 35.0%
! AGAAAGCTACTCAAGAGTTT+TGG - Chr5:92562577-92562596 MsG0580029123.01.T01:CDS 35.0%
! TACACTTTTCCCTATGTAAC+AGG - Chr5:92561457-92561476 MsG0580029123.01.T01:intron 35.0%
! TCAATGGTAGACACACATTT+TGG - Chr5:92559237-92559256 MsG0580029123.01.T01:intron 35.0%
! TCTTGAGTAGCTTTCTAGTA+TGG + Chr5:92562573-92562592 None:intergenic 35.0%
! TCTTTCTTTTCACATGGTAC+AGG + Chr5:92559641-92559660 None:intergenic 35.0%
! TGACTACTACCTTTGATAGT+AGG - Chr5:92561221-92561240 MsG0580029123.01.T01:intron 35.0%
! TGTTCTGTTCTTTTGCAACT+TGG + Chr5:92562980-92562999 None:intergenic 35.0%
!! AAGCTTGTTGGTAAAAATGG+AGG - Chr5:92557978-92557997 MsG0580029123.01.T01:CDS 35.0%
!! ACCACTCACTTTTCTTTTTC+CGG + Chr5:92559362-92559381 None:intergenic 35.0%
!! TGAGATTTGGTGAACATTTG+AGG + Chr5:92560889-92560908 None:intergenic 35.0%
!! TTCATCTGATTTGCTGCATT+TGG + Chr5:92558144-92558163 None:intergenic 35.0%
!!! GAACTCTGATCACGTTTTTT+GGG - Chr5:92558828-92558847 MsG0580029123.01.T01:CDS 35.0%
!!! TGTTTTGACTTTGTAGGATC+AGG - Chr5:92558355-92558374 MsG0580029123.01.T01:CDS 35.0%
AAAAGGAGTTAGCACTGCTT+TGG - Chr5:92558441-92558460 MsG0580029123.01.T01:intron 40.0%
AAAAGGGGCAAAAACGGTAA+CGG - Chr5:92561137-92561156 MsG0580029123.01.T01:intron 40.0%
AATTAGTCCTTCAAAGGGAG+AGG - Chr5:92562802-92562821 MsG0580029123.01.T01:five_prime_UTR 40.0%
ACGTGAAGAAAGGAAGAAGA+AGG + Chr5:92560822-92560841 None:intergenic 40.0%
AGAAAAGTGGCAGAGAGAAA+TGG - Chr5:92559658-92559677 MsG0580029123.01.T01:intron 40.0%
AGCATGAAACCTTGTTGCAT+TGG + Chr5:92562301-92562320 None:intergenic 40.0%
AGCGTTAAAAGGGGCAAAAA+CGG - Chr5:92561131-92561150 MsG0580029123.01.T01:intron 40.0%
AGGATGACTTTGTAGTCGAA+CGG + Chr5:92562146-92562165 None:intergenic 40.0%
AGGGTGCAGATATGAAAAAG+GGG - Chr5:92560723-92560742 MsG0580029123.01.T01:intron 40.0%
ATACCAAAACTCCATAGCAG+TGG + Chr5:92561498-92561517 None:intergenic 40.0%
ATATAGGACAAACTGCAGGT+GGG - Chr5:92560762-92560781 MsG0580029123.01.T01:intron 40.0%
ATCAGGAGGAGATATGATGA+AGG - Chr5:92558372-92558391 MsG0580029123.01.T01:CDS 40.0%
ATCATTAAACCTCAACGTCG+CGG - Chr5:92562857-92562876 MsG0580029123.01.T01:five_prime_UTR 40.0%
ATGTTAACCATTGGAGCCAA+TGG + Chr5:92562683-92562702 None:intergenic 40.0%
CAAAAACGGCCGTTACAAAT+CGG + Chr5:92561175-92561194 None:intergenic 40.0%
CTGATTTCTCTTGCGAAAAG+AGG + Chr5:92561561-92561580 None:intergenic 40.0%
GAGGAGATATGATGAAGGAA+AGG - Chr5:92558377-92558396 MsG0580029123.01.T01:CDS 40.0%
GATACAAATAACGGTCTTCG+CGG - Chr5:92560256-92560275 MsG0580029123.01.T01:intron 40.0%
GCCACTAATTAGTCCTTCAA+AGG - Chr5:92562796-92562815 MsG0580029123.01.T01:five_prime_UTR 40.0%
GGACATTGTGAAGGACTTAA+TGG - Chr5:92562167-92562186 MsG0580029123.01.T01:intron 40.0%
GTAGTACTAGTAAGGGATCT+CGG + Chr5:92560152-92560171 None:intergenic 40.0%
GTATGTTGACCAAGGAATTG+TGG - Chr5:92561514-92561533 MsG0580029123.01.T01:intron 40.0%
GTATTTGGATACCCTTCCTA+AGG - Chr5:92561747-92561766 MsG0580029123.01.T01:intron 40.0%
GTGAAGGACTTAATGGTTGA+TGG - Chr5:92562174-92562193 MsG0580029123.01.T01:intron 40.0%
GTGCAAAAGCAACAGCATAT+AGG - Chr5:92560746-92560765 MsG0580029123.01.T01:intron 40.0%
GTTGTTCTTCACGTGAAGAA+AGG + Chr5:92560832-92560851 None:intergenic 40.0%
TAAAGAGAAGCTTATGCACG+GGG + Chr5:92562462-92562481 None:intergenic 40.0%
TAACACGTACTTTGGCAAAG+TGG - Chr5:92559204-92559223 MsG0580029123.01.T01:intron 40.0%
TACAGCTTAAACCTACTCAG+GGG + Chr5:92559495-92559514 None:intergenic 40.0%
TAGCAAGATCCAATGCAACA+AGG - Chr5:92562289-92562308 MsG0580029123.01.T01:intron 40.0%
TCAGGATATGTTTGCCAAGA+AGG + Chr5:92559725-92559744 None:intergenic 40.0%
TCCGGAAAAAGAAAAGTGAG+TGG - Chr5:92559358-92559377 MsG0580029123.01.T01:CDS 40.0%
TCTAACATGTTCTGTTCTGC+AGG - Chr5:92561290-92561309 MsG0580029123.01.T01:CDS 40.0%
TCTTGGCAAACATATCCTGA+TGG - Chr5:92559725-92559744 MsG0580029123.01.T01:intron 40.0%
TTCGACTACAAAGTCATCCT+GGG - Chr5:92562146-92562165 MsG0580029123.01.T01:intron 40.0%
TTGTAGTCATGTCAACGCAT+TGG - Chr5:92559865-92559884 MsG0580029123.01.T01:intron 40.0%
! ACTCGGATTTTCCTATAACC+AGG - Chr5:92559978-92559997 MsG0580029123.01.T01:intron 40.0%
! AGCAATGCTGTTGATAGACA+TGG + Chr5:92561701-92561720 None:intergenic 40.0%
! ATTGGCTCAGCTGAATAATC+TGG - Chr5:92560613-92560632 MsG0580029123.01.T01:intron 40.0%
! ATTGGCTCCAATGGTTAACA+TGG - Chr5:92562682-92562701 MsG0580029123.01.T01:intron 40.0%
! CAAGGGTGCAGATATGAAAA+AGG - Chr5:92560721-92560740 MsG0580029123.01.T01:intron 40.0%
! CAGCATTGCTTTAGATGACA+TGG - Chr5:92561711-92561730 MsG0580029123.01.T01:intron 40.0%
! CCCTTTGAAGGACTAATTAG+TGG + Chr5:92562800-92562819 None:intergenic 40.0%
! CTCGGATTTTCCTATAACCA+GGG - Chr5:92559979-92559998 MsG0580029123.01.T01:intron 40.0%
! CTTTTCGCAAGAGAAATCAG+CGG - Chr5:92561561-92561580 MsG0580029123.01.T01:intron 40.0%
! GAGGCATTAAAGTGCCAAAA+TGG - Chr5:92560551-92560570 MsG0580029123.01.T01:intron 40.0%
! TACCAAGAACTAGCCTACAT+TGG + Chr5:92561414-92561433 None:intergenic 40.0%
! TGCTTGGTGAAGATATGTCA+GGG - Chr5:92558413-92558432 MsG0580029123.01.T01:intron 40.0%
! TTAAAAGTTTGAGGGTGTGC+AGG - Chr5:92559441-92559460 MsG0580029123.01.T01:CDS 40.0%
! TTCCAATGTAGGCTAGTTCT+TGG - Chr5:92561409-92561428 MsG0580029123.01.T01:intron 40.0%
! TTTGACTTTGTAGGATCAGG+AGG - Chr5:92558358-92558377 MsG0580029123.01.T01:CDS 40.0%
!! AAGGGTATCCAAATACGACT+CGG + Chr5:92561743-92561762 None:intergenic 40.0%
!! AAGGTTCTAAAAAACGGTCG+CGG - Chr5:92560179-92560198 MsG0580029123.01.T01:intron 40.0%
!! ATGGATTGGCTTCTTTGTGT+TGG - Chr5:92559677-92559696 MsG0580029123.01.T01:intron 40.0%
!! CTCACTTTTCTTTTTCCGGA+TGG + Chr5:92559358-92559377 None:intergenic 40.0%
!! CTTTTTCATATCTGCACCCT+TGG + Chr5:92560723-92560742 None:intergenic 40.0%
!! GAGTTTTGGTATGTTGACCA+AGG - Chr5:92561506-92561525 MsG0580029123.01.T01:intron 40.0%
!! TAGATTTCCATTGGCTCCAA+TGG - Chr5:92562673-92562692 MsG0580029123.01.T01:intron 40.0%
!! TGGGATTTGTTGCAACATGT+AGG - Chr5:92559584-92559603 MsG0580029123.01.T01:intron 40.0%
!!! ATTTGTAACGGCCGTTTTTG+CGG - Chr5:92561175-92561194 MsG0580029123.01.T01:intron 40.0%
!!! CGAACTCTGATCACGTTTTT+TGG - Chr5:92558827-92558846 MsG0580029123.01.T01:CDS 40.0%
AAATCGCCGTTACAGCGTTA+CGG + Chr5:92561092-92561111 None:intergenic 45.0%
ACTTTGTAGTCGAACGGCTA+GGG + Chr5:92562140-92562159 None:intergenic 45.0%
AGGTTTGCGAAGTTACTGCT+TGG - Chr5:92558397-92558416 MsG0580029123.01.T01:CDS 45.0%
AGTGGCAGAGAGAAATGGAT+TGG - Chr5:92559663-92559682 MsG0580029123.01.T01:intron 45.0%
CAGCATATAGGACAAACTGC+AGG - Chr5:92560758-92560777 MsG0580029123.01.T01:intron 45.0%
CATATAGGACAAACTGCAGG+TGG - Chr5:92560761-92560780 MsG0580029123.01.T01:intron 45.0%
CGAACTCTGATCACGATATG+CGG - Chr5:92558912-92558931 MsG0580029123.01.T01:CDS 45.0%
CGTTAAGGTTGTCGCGATTT+CGG - Chr5:92560217-92560236 MsG0580029123.01.T01:intron 45.0%
CTCAAGTGCAACATGCTCAT+TGG + Chr5:92562049-92562068 None:intergenic 45.0%
CTGGCGCCATACATAAATTG+CGG + Chr5:92562091-92562110 None:intergenic 45.0%
GAAGGACTAATTAGTGGCAC+AGG + Chr5:92562794-92562813 None:intergenic 45.0%
GACATAGTGCCCTTCCTAAT+AGG + Chr5:92558122-92558141 None:intergenic 45.0%
GACATGGCTGCTTCAGTATT+TGG + Chr5:92561685-92561704 None:intergenic 45.0%
GATATGTCAGGGTCTGGAAA+AGG - Chr5:92558424-92558443 MsG0580029123.01.T01:intron 45.0%
GGACGCTGCGATACAAATAA+CGG - Chr5:92560247-92560266 MsG0580029123.01.T01:intron 45.0%
GGGTGCAGATATGAAAAAGG+GGG - Chr5:92560724-92560743 MsG0580029123.01.T01:intron 45.0%
GTTCGACTACAAAGTCATCC+TGG - Chr5:92562145-92562164 MsG0580029123.01.T01:intron 45.0%
TAAGTCCTTCACAATGTCCC+AGG + Chr5:92562166-92562185 None:intergenic 45.0%
TCAGAATGGAAGAACGTGCT+TGG - Chr5:92561952-92561971 MsG0580029123.01.T01:intron 45.0%
TCCTGATGGTAGTAAGCTAG+AGG - Chr5:92559739-92559758 MsG0580029123.01.T01:intron 45.0%
TCTTGAGTTCTCACTGAGAC+CGG + Chr5:92561630-92561649 None:intergenic 45.0%
TGGACCACTTGATGCATCAA+GGG - Chr5:92560633-92560652 MsG0580029123.01.T01:intron 45.0%
TTGTCGAGTTTACGTAGAGC+TGG + Chr5:92561357-92561376 None:intergenic 45.0%
! AATGGGTCTTGTAGTTCCAC+TGG - Chr5:92558039-92558058 MsG0580029123.01.T01:CDS 45.0%
! ACCTCTAGCTTACTACCATC+AGG + Chr5:92559743-92559762 None:intergenic 45.0%
! AGGGTATCCAAATACGACTC+GGG + Chr5:92561742-92561761 None:intergenic 45.0%
! CACGGATTGCCTACTATCAA+AGG + Chr5:92561233-92561252 None:intergenic 45.0%
! CTGCTTGGTGAAGATATGTC+AGG - Chr5:92558412-92558431 MsG0580029123.01.T01:CDS 45.0%
! CTTTTCTTTTTCCGGATGGC+AGG + Chr5:92559354-92559373 None:intergenic 45.0%
! GTGGTTTAGAGTGAGATCTC+TGG + Chr5:92562110-92562129 None:intergenic 45.0%
! GTTCCACTGCTATGGAGTTT+TGG - Chr5:92561492-92561511 MsG0580029123.01.T01:intron 45.0%
!! CTGCCGATACCGATTTGTAA+CGG - Chr5:92561163-92561182 MsG0580029123.01.T01:intron 45.0%
!! TTACAAATCGGTATCGGCAG+CGG + Chr5:92561163-92561182 None:intergenic 45.0%
!!! CTCAAGAGTTTTGGAGAGCA+TGG - Chr5:92562586-92562605 MsG0580029123.01.T01:exon 45.0%
!!! GCGACCGTTTTTTAGAACCT+TGG + Chr5:92560180-92560199 None:intergenic 45.0%
!! ATTATACATATATAAAAAAT+TGG - Chr5:92558625-92558644 MsG0580029123.01.T01:intron 5.0%
!!! TAAAAACTTTTTTTTTTTTA+GGG + Chr5:92558673-92558692 None:intergenic 5.0%
AATCTGCACCCCCTAACCTA+GGG + Chr5:92558551-92558570 None:intergenic 50.0%
ACGGGACGTTACCGCAAAAA+CGG + Chr5:92561189-92561208 None:intergenic 50.0%
AGCTTAAACCTACTCAGGGG+CGG + Chr5:92559492-92559511 None:intergenic 50.0%
AGTCTGAACGGAGTCCGTAA+CGG - Chr5:92561024-92561043 MsG0580029123.01.T01:intron 50.0%
ATCTGAGCAACACGATCCAG+TGG + Chr5:92558058-92558077 None:intergenic 50.0%
ATTGTGGCACCAGATGCAGA+TGG - Chr5:92561530-92561549 MsG0580029123.01.T01:intron 50.0%
CAAGAGAAATCAGCGGCAAG+AGG - Chr5:92561568-92561587 MsG0580029123.01.T01:intron 50.0%
CAGCAGGTAAATTGAGTCCC+TGG + Chr5:92559999-92560018 None:intergenic 50.0%
CGGCCGTTACAAATCGGTAT+CGG + Chr5:92561169-92561188 None:intergenic 50.0%
CTGGACCACTTGATGCATCA+AGG - Chr5:92560632-92560651 MsG0580029123.01.T01:intron 50.0%
GACTTTGTAGTCGAACGGCT+AGG + Chr5:92562141-92562160 None:intergenic 50.0%
GCAAGCACTCTTGAGAGAAC+TGG + Chr5:92562008-92562027 None:intergenic 50.0%
GCACTCTTGAGAGAACTGGT+CGG + Chr5:92562004-92562023 None:intergenic 50.0%
GGAAGTTCCCGAGTCGTATT+TGG - Chr5:92561732-92561751 MsG0580029123.01.T01:intron 50.0%
GGACCACTTGATGCATCAAG+GGG - Chr5:92560634-92560653 MsG0580029123.01.T01:intron 50.0%
GGAGTTACCTCTCCCTTTGA+AGG + Chr5:92562812-92562831 None:intergenic 50.0%
GGTGAAGATATGTCAGGGTC+TGG - Chr5:92558418-92558437 MsG0580029123.01.T01:intron 50.0%
GTATCCAGGACCCTAGGTTA+GGG - Chr5:92558538-92558557 MsG0580029123.01.T01:intron 50.0%
GTCATCCTGGGACATTGTGA+AGG - Chr5:92562158-92562177 MsG0580029123.01.T01:intron 50.0%
TAATCTGCACCCCCTAACCT+AGG + Chr5:92558552-92558571 None:intergenic 50.0%
TATCCAGGACCCTAGGTTAG+GGG - Chr5:92558539-92558558 MsG0580029123.01.T01:intron 50.0%
TGGCTGTGATGAGCCTATGT+AGG + Chr5:92560673-92560692 None:intergenic 50.0%
TGTCGCGATTTCGGCTGTAA+CGG - Chr5:92560226-92560245 MsG0580029123.01.T01:intron 50.0%
TTCATTGAAGCAGCGCTTCC+CGG - Chr5:92562242-92562261 MsG0580029123.01.T01:intron 50.0%
! AAACCTCAACGTCGCGGTTT+TGG - Chr5:92562863-92562882 MsG0580029123.01.T01:five_prime_UTR 50.0%
! AAGCTTATGCACGGGGTACT+GGG + Chr5:92562455-92562474 None:intergenic 50.0%
!! CATCTGGTGCCACAATTCCT+TGG + Chr5:92561526-92561545 None:intergenic 50.0%
ACACCAAAACCGCGACGTTG+AGG + Chr5:92562869-92562888 None:intergenic 55.0%
ATCAGCGGCAAGAGGAGAAG+TGG - Chr5:92561576-92561595 MsG0580029123.01.T01:intron 55.0%
ATCCAGGACCCTAGGTTAGG+GGG - Chr5:92558540-92558559 MsG0580029123.01.T01:intron 55.0%
CCTTCCTTCCATGTTGACCG+CGG + Chr5:92560790-92560809 None:intergenic 55.0%
CGGTCAACATGGAAGGAAGG+AGG - Chr5:92560790-92560809 MsG0580029123.01.T01:intron 55.0%
CGTATCCAGGACCCTAGGTT+AGG - Chr5:92558537-92558556 MsG0580029123.01.T01:intron 55.0%
CTTCCTTCCATGTTGACCGC+GGG + Chr5:92560789-92560808 None:intergenic 55.0%
GAAGCTTATGCACGGGGTAC+TGG + Chr5:92562456-92562475 None:intergenic 55.0%
GAGGCTGATCCATCTGCATC+TGG + Chr5:92561542-92561561 None:intergenic 55.0%
GGACCCCTTGATGCATCAAG+TGG + Chr5:92560640-92560659 None:intergenic 55.0%
GGCGTTCCGTAACGCTGTAA+CGG - Chr5:92561083-92561102 MsG0580029123.01.T01:intron 55.0%
GTAGGTTCAGTGGCGTATCC+AGG - Chr5:92558524-92558543 MsG0580029123.01.T01:intron 55.0%
ACGACCGCGAAACGCCGTTA+CGG + Chr5:92561060-92561079 None:intergenic 60.0%
ACGGCGTTTCGCGGTCGTAA+CGG - Chr5:92561062-92561081 MsG0580029123.01.T01:intron 60.0%
AGCGGCAAGAGGAGAAGTGG+TGG - Chr5:92561579-92561598 MsG0580029123.01.T01:intron 60.0%
AGTGGCGTATCCAGGACCCT+AGG - Chr5:92558532-92558551 MsG0580029123.01.T01:intron 60.0%
CACTCAGCGTACCTGCCATC+CGG - Chr5:92559340-92559359 MsG0580029123.01.T01:intron 60.0%
CCGCGGTCAACATGGAAGGA+AGG - Chr5:92560787-92560806 MsG0580029123.01.T01:intron 60.0%
GAACGGCTAGGGTAGAGTGG+TGG + Chr5:92562129-92562148 None:intergenic 60.0%
GAGTCCGTAACGGCGTTTCG+CGG - Chr5:92561034-92561053 MsG0580029123.01.T01:intron 60.0%
GAGTTCTCACTGAGACCGGC+AGG + Chr5:92561626-92561645 None:intergenic 60.0%
GTCGAACGGCTAGGGTAGAG+TGG + Chr5:92562132-92562151 None:intergenic 60.0%
TTCTCACTGAGACCGGCAGG+AGG + Chr5:92561623-92561642 None:intergenic 60.0%
ACCTACTCAGGGGCGGAGCT+AGG + Chr5:92559485-92559504 None:intergenic 65.0%
ACCTAGCTCCGCCCCTGAGT+AGG - Chr5:92559481-92559500 MsG0580029123.01.T01:CDS 65.0%
ACGGCCGCGAAACGCCGTTA+CGG + Chr5:92561041-92561060 None:intergenic 65.0%
ACGGCGTTTCGCGGCCGTAA+CGG - Chr5:92561043-92561062 MsG0580029123.01.T01:intron 65.0%
CAAACTGCAGGTGGGACCCG+CGG - Chr5:92560770-92560789 MsG0580029123.01.T01:intron 65.0%
CACCCCCTAACCTAGGGTCC+TGG + Chr5:92558545-92558564 None:intergenic 65.0%
GGACCCGCGGTCAACATGGA+AGG - Chr5:92560783-92560802 MsG0580029123.01.T01:intron 65.0%
GGTGTGCAGGTGCACTCCCT+GGG - Chr5:92559454-92559473 MsG0580029123.01.T01:CDS 65.0%
TACTCAGGGGCGGAGCTAGG+TGG + Chr5:92559482-92559501 None:intergenic 65.0%
TCGCGATCGCGGTCGCGTTA+AGG - Chr5:92560202-92560221 MsG0580029123.01.T01:intron 65.0%
! CAGGAGGCACACGGGGTACT+GGG + Chr5:92561607-92561626 None:intergenic 65.0%
! TGAGACCGGCAGGAGGCACA+CGG + Chr5:92561616-92561635 None:intergenic 65.0%
AACGGTCGCGGTCGCGATCG+CGG - Chr5:92560191-92560210 MsG0580029123.01.T01:intron 70.0%
GCGGAGCTAGGTGGTGCCCA+GGG + Chr5:92559473-92559492 None:intergenic 70.0%
GCGGCCGTAACGGCGTTTCG+CGG - Chr5:92561053-92561072 MsG0580029123.01.T01:intron 70.0%
GGGTGTGCAGGTGCACTCCC+TGG - Chr5:92559453-92559472 MsG0580029123.01.T01:CDS 70.0%
GGTGGGACCCGCGGTCAACA+TGG - Chr5:92560779-92560798 MsG0580029123.01.T01:intron 70.0%
GTACCCCGTGTGCCTCCTGC+CGG - Chr5:92561608-92561627 MsG0580029123.01.T01:intron 70.0%
! AGACCGGCAGGAGGCACACG+GGG + Chr5:92561614-92561633 None:intergenic 70.0%
! GAGACCGGCAGGAGGCACAC+GGG + Chr5:92561615-92561634 None:intergenic 70.0%
! GCAGGAGGCACACGGGGTAC+TGG + Chr5:92561608-92561627 None:intergenic 70.0%
GGCGGAGCTAGGTGGTGCCC+AGG + Chr5:92559474-92559493 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 92557877 92563111 92557877 ID=MsG0580029123.01;Name=MsG0580029123.01
Chr5 mRNA 92557877 92563111 92557877 ID=MsG0580029123.01.T01;Parent=MsG0580029123.01;Name=MsG0580029123.01.T01;_AED=0.36;_eAED=0.36;_QI=367|0.66|0.71|1|0.83|0.85|7|54|434
Chr5 exon 92557877 92558431 92557877 ID=MsG0580029123.01.T01:exon:17892;Parent=MsG0580029123.01.T01
Chr5 exon 92558725 92559032 92558725 ID=MsG0580029123.01.T01:exon:17891;Parent=MsG0580029123.01.T01
Chr5 exon 92559353 92559509 92559353 ID=MsG0580029123.01.T01:exon:17890;Parent=MsG0580029123.01.T01
Chr5 exon 92559602 92559676 92559602 ID=MsG0580029123.01.T01:exon:17889;Parent=MsG0580029123.01.T01
Chr5 exon 92561228 92561382 92561228 ID=MsG0580029123.01.T01:exon:17888;Parent=MsG0580029123.01.T01
Chr5 exon 92562495 92562617 92562495 ID=MsG0580029123.01.T01:exon:17887;Parent=MsG0580029123.01.T01
Chr5 exon 92562759 92563111 92562759 ID=MsG0580029123.01.T01:exon:17886;Parent=MsG0580029123.01.T01
Chr5 five_prime_UTR 92562759 92563111 92562759 ID=MsG0580029123.01.T01:five_prime_utr;Parent=MsG0580029123.01.T01
Chr5 five_prime_UTR 92562604 92562617 92562604 ID=MsG0580029123.01.T01:five_prime_utr;Parent=MsG0580029123.01.T01
Chr5 CDS 92562495 92562603 92562495 ID=MsG0580029123.01.T01:cds;Parent=MsG0580029123.01.T01
Chr5 CDS 92561228 92561382 92561228 ID=MsG0580029123.01.T01:cds;Parent=MsG0580029123.01.T01
Chr5 CDS 92559602 92559676 92559602 ID=MsG0580029123.01.T01:cds;Parent=MsG0580029123.01.T01
Chr5 CDS 92559353 92559509 92559353 ID=MsG0580029123.01.T01:cds;Parent=MsG0580029123.01.T01
Chr5 CDS 92558725 92559032 92558725 ID=MsG0580029123.01.T01:cds;Parent=MsG0580029123.01.T01
Chr5 CDS 92557931 92558431 92557931 ID=MsG0580029123.01.T01:cds;Parent=MsG0580029123.01.T01
Chr5 three_prime_UTR 92557877 92557930 92557877 ID=MsG0580029123.01.T01:three_prime_utr;Parent=MsG0580029123.01.T01
Gene Sequence

>MsG0580029123.01.T01

ATGATGAAGGAAAGGTTTGCGAAGTTACTGCTTGGTGAAGATATGTCAGGGTCTGGAAAAGGAGTTAGCACTGCTTTGGCTATCTCAAATGCTATTACTAATTTGTGTGGAACTGTATTTGGACAATTATGGAGACTAGAACCTGTACCATGTGAAAAGAAAGAAAAGTGGCAGAGAGAAATGGATTGGCTTCTTTGTGTTGGCGATCACATTGTTGAGTTAATGCCTTCTTGGCAAACATATCCTGATGGTAGTAAGCTAGAGGTAATGACTTGCAGACCAAGATCAGACATTTTTATCAATCTTCCAGCTCTACGTAAACTCGACAATATGCTGCTTGAAATTTTAGATAGTTCCACTGCTATGGAGTTTTGGTATGTTGACCAAGGAATTGTGGCACCAGATGCAGATGGATCAGCCTCTTTTCGCAAGAGAAATCAGCGGCAAGAGGAGAAGTGGTGGCTCCCAGTACCCCGTGTGCCTCCTGCCGGTCTCAAATGGAAGAACGTGCTTGGAGATTTTATTTATCGATACATCACATCCGACCAGTTCTCTCAAGAGTGCTTGCTTGATTGCATAGACATCTCCAATGAGCATGTTGCACTTGAGATTGCTAACCGTTTAGAAGCCGCAATTTATGTATGGCGCCAGAGATCTCACTCTAAACCACCACTCTACCCTAGCCGTTCGACTACAAAGTCATCCTGGGACATTGTGAAGGACTTAATGGTTGATGGAGACAAGAGAGATTTGCTTGCAGAGAGAGCTGAATGTATTCTAATTTCATTGAAGCAGCGCTTCCCGGATGTTGGAAAATCCATACTAGAAAGCTACTCAAGAGTTTTGGAGAGCATGGCATTTAACATAGTAGCTCGCATAGATGATTTACTATATGTTGATGACTTAACCAAACATTCAGATAGATTTCCATTGGCTCCAATGGTTAACATGGTTTCACAGAAAAAGGTTTCACAACAATTACTAGTGTCTGTCTCAGACACTCAACACAAAGCAAAATTTGGAACATCTAGTTGTTCACCTGTGCCACTAATTAGTCCTTCAAAGGGAGAGGTAACTCCTTTTATCCACAACAATAACAACAATATCATTAAACCTCAACGTCGCGGTTTTGGTGTAAAAAGAGTGTTGTCAAATTATCTTGGAGGAGAGATGAAAGCAGCAAAGATATTTAGCAACTCAACTCATGAAGTGAGTAGTTCAAATCCAAGTTGCAAAAGAACAGAACAACTAGAGTGTAAGAATGAATCATGTTCCATGAAAAGCAAGACAAATGATGATGTGTGA

Protein sequence

>MsG0580029123.01.T01

MMKERFAKLLLGEDMSGSGKGVSTALAISNAITNLCGTVFGQLWRLEPVPCEKKEKWQREMDWLLCVGDHIVELMPSWQTYPDGSKLEVMTCRPRSDIFINLPALRKLDNMLLEILDSSTAMEFWYVDQGIVAPDADGSASFRKRNQRQEEKWWLPVPRVPPAGLKWKNVLGDFIYRYITSDQFSQECLLDCIDISNEHVALEIANRLEAAIYVWRQRSHSKPPLYPSRSTTKSSWDIVKDLMVDGDKRDLLAERAECILISLKQRFPDVGKSILESYSRVLESMAFNIVARIDDLLYVDDLTKHSDRFPLAPMVNMVSQKKVSQQLLVSVSDTQHKAKFGTSSCSPVPLISPSKGEVTPFIHNNNNNIIKPQRRGFGVKRVLSNYLGGEMKAAKIFSNSTHEVSSSNPSCKRTEQLECKNESCSMKSKTNDDV*