AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022768.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022768.01.T01 MTR_4g094615 64.803 304 60 6 49 348 200 460 6.41e-119 351
MsG0480022768.01.T01 MTR_4g094615 73.214 168 24 2 49 216 200 346 6.31e-75 236
MsG0480022768.01.T01 MTR_4g094615 73.214 168 24 2 49 216 200 346 1.71e-74 236
MsG0480022768.01.T01 MTR_8g090145 48.649 148 58 2 201 348 65 194 2.82e-29 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022768.01.T01 AT3G51270 43.226 310 123 6 49 348 192 458 6.68e-51 176
MsG0480022768.01.T01 AT3G51270 40.968 310 125 6 49 348 200 461 3.11e-50 174
MsG0480022768.01.T01 AT3G51270 40.968 310 125 6 49 348 200 461 3.11e-50 174
MsG0480022768.01.T01 AT3G51270 40.968 310 125 6 49 348 200 461 3.11e-50 174

Find 73 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTCAAAATTAAGGAATT+TGG 0.151156 4:-76495706 MsG0480022768.01.T01:CDS
GGATATCCAACTTGCTTTCT+AGG 0.164178 4:-76493779 MsG0480022768.01.T01:CDS
CTTGTCTTTGTGAGAATTCC+TGG 0.205564 4:+76493082 None:intergenic
CAAATCAATTAATACCATTA+TGG 0.232372 4:+76493205 None:intergenic
AATGGTATTAATTGATTTGC+AGG 0.268091 4:-76493201 MsG0480022768.01.T01:CDS
AAAATTAAGGAATTTGGAAT+TGG 0.283612 4:-76495700 MsG0480022768.01.T01:CDS
CAATTGTTGGTATAATTATT+CGG 0.324204 4:-76496525 MsG0480022768.01.T01:CDS
AAATTAAGGAATTTGGAATT+GGG 0.346178 4:-76495699 MsG0480022768.01.T01:CDS
GAACTTGCTGCTAGTGGCTT+TGG 0.348488 4:-76494532 MsG0480022768.01.T01:CDS
GGTGTTACATTTCAAAATTA+AGG 0.354517 4:-76495713 MsG0480022768.01.T01:CDS
TTTGTTCTTAAGCTTGCTTT+TGG 0.363240 4:-76496691 MsG0480022768.01.T01:intron
CTGCTTGGTTTGAGAAGAAT+GGG 0.381928 4:-76495741 MsG0480022768.01.T01:CDS
CTTGCTTTCTAGGCTTTATG+AGG 0.395253 4:-76493769 MsG0480022768.01.T01:CDS
GCTCTTACATCTTTGCATTA+CGG 0.410534 4:+76496267 None:intergenic
CGTAGGGGACGGAAGAAACT+TGG 0.423011 4:-76493107 MsG0480022768.01.T01:CDS
TGCTATAGCATCAGCTCGTA+GGG 0.423360 4:-76493123 MsG0480022768.01.T01:CDS
AATTGATTTGCAGGAGGAAG+TGG 0.434562 4:-76493192 MsG0480022768.01.T01:CDS
ACTGCTTGGTTTGAGAAGAA+TGG 0.437564 4:-76495742 MsG0480022768.01.T01:CDS
ATTTATCTGCAGTTTATTGA+AGG 0.437822 4:-76494408 MsG0480022768.01.T01:intron
CCTTTACATGAAAACCATAA+TGG 0.439086 4:-76493219 MsG0480022768.01.T01:CDS
ATTGCTTGAATTTGTATGCT+TGG 0.446881 4:-76496605 MsG0480022768.01.T01:CDS
GTTCTGCAAATGCAGCGTTC+AGG 0.447538 4:-76496583 MsG0480022768.01.T01:CDS
TTTCAATGAATTTAACATCA+TGG 0.456130 4:-76496473 MsG0480022768.01.T01:intron
TGAAAACAGCGGATCTGAAA+AGG 0.481623 4:-76493490 MsG0480022768.01.T01:CDS
GTGTTCGTGATTTCACTGCT+TGG 0.499472 4:-76495756 MsG0480022768.01.T01:CDS
TTCAAATGCAAATGAGCAGC+TGG 0.501357 4:-76493031 MsG0480022768.01.T01:CDS
TGGAAAAGAGGAGAGATTGA+AGG 0.503576 4:-76493513 MsG0480022768.01.T01:CDS
TCTTCAATAGACAGCAGTGC+TGG 0.505671 4:-76494568 MsG0480022768.01.T01:CDS
TTTGCTTAGGACATTAGTGT+TGG 0.508419 4:-76493814 MsG0480022768.01.T01:intron
AATTAAGGAATTTGGAATTG+GGG 0.508972 4:-76495698 MsG0480022768.01.T01:CDS
GACGGAAGAAACTTGGATCC+AGG 0.515564 4:-76493100 MsG0480022768.01.T01:CDS
TTCTGATAGTGAAGATAAGA+TGG 0.516958 4:-76494364 MsG0480022768.01.T01:CDS
CAAAACCAGTGTAAAATATG+TGG 0.518044 4:+76496635 None:intergenic
ATTGATTTGCAGGAGGAAGT+GGG 0.518753 4:-76493191 MsG0480022768.01.T01:CDS
GTGCTATAGCATCAGCTCGT+AGG 0.522126 4:-76493124 MsG0480022768.01.T01:CDS
TGTTGGTATAATTATTCGGC+TGG 0.523681 4:-76496521 MsG0480022768.01.T01:CDS
ACATTAGTGTTGGAGAACTT+AGG 0.527556 4:-76493804 MsG0480022768.01.T01:CDS
TAATGAAGGGAGAGAGGAAG+CGG 0.527957 4:-76494604 MsG0480022768.01.T01:intron
ACCAGTGTAAAATATGTGGA+AGG 0.535587 4:+76496639 None:intergenic
TTAGTCAACTCTGATGGTGT+TGG 0.537868 4:-76497124 None:intergenic
AAGATGAGGAAGATATTCAA+AGG 0.538915 4:-76494504 MsG0480022768.01.T01:CDS
TGGTTTGAGAAGAATGGGAG+AGG 0.541423 4:-76495736 MsG0480022768.01.T01:CDS
TGCGACACAGACACCATTTG+CGG 0.549608 4:+76496290 None:intergenic
GTAAAATATGTGGAAGGGAG+TGG 0.558016 4:+76496645 None:intergenic
ACATGAAAGTCATGGAAAAG+AGG 0.563019 4:-76493525 MsG0480022768.01.T01:CDS
AATGAAACCATTTAGGATGA+GGG 0.563988 4:-76493548 MsG0480022768.01.T01:intron
GTTTGAGAAGAATGGGAGAG+GGG 0.566468 4:-76495734 MsG0480022768.01.T01:CDS
ATTAAGGAATTTGGAATTGG+GGG 0.567629 4:-76495697 MsG0480022768.01.T01:CDS
GATAAGGAACTTGCTGCTAG+TGG 0.569623 4:-76494538 MsG0480022768.01.T01:CDS
GGTTTGAGAAGAATGGGAGA+GGG 0.571548 4:-76495735 MsG0480022768.01.T01:CDS
AGATGAGGAAGATATTCAAA+GGG 0.572279 4:-76494503 MsG0480022768.01.T01:intron
GATGAGGGACATGAAAGTCA+TGG 0.580821 4:-76493533 MsG0480022768.01.T01:CDS
ATAAAGCCTAGAAAGCAAGT+TGG 0.584700 4:+76493773 None:intergenic
TAGCATCAGCTCGTAGGGGA+CGG 0.585566 4:-76493118 MsG0480022768.01.T01:CDS
ATTATTCGGCTGGCAGAACA+TGG 0.588090 4:-76496511 MsG0480022768.01.T01:CDS
AATGAAGGGAGAGAGGAAGC+GGG 0.589391 4:-76494603 MsG0480022768.01.T01:intron
CAGGAATTCTCACAAAGACA+AGG 0.593405 4:-76493081 MsG0480022768.01.T01:CDS
TCTGATGGTGTTGGATATTG+CGG 0.597963 4:-76497115 None:intergenic
TAGGTCATCTCAAAATGCTA+AGG 0.601055 4:-76493054 MsG0480022768.01.T01:CDS
CGATTCTAATGAAGGGAGAG+AGG 0.607327 4:-76494610 MsG0480022768.01.T01:intron
CCAGTGTAAAATATGTGGAA+GGG 0.612107 4:+76496640 None:intergenic
TAGTGTTGGAGAACTTAGGA+AGG 0.614955 4:-76493800 MsG0480022768.01.T01:CDS
GGTATTAATTGATTTGCAGG+AGG 0.616188 4:-76493198 MsG0480022768.01.T01:CDS
GTGAAGATAAGATGGTGACT+TGG 0.616222 4:-76494356 MsG0480022768.01.T01:intron
TCTGCAGTTTATTGAAGGCG+AGG 0.623489 4:-76494403 MsG0480022768.01.T01:intron
GCAGTTTATTGAAGGCGAGG+TGG 0.636859 4:-76494400 MsG0480022768.01.T01:intron
CTCACAAAGACAAGGGTGGT+AGG 0.646398 4:-76493073 MsG0480022768.01.T01:CDS
AAAGGAAGATGCAAGCGACA+CGG 0.662177 4:-76493472 MsG0480022768.01.T01:intron
AAATATGTGGAAGGGAGTGG+TGG 0.677449 4:+76496648 None:intergenic
AGGAATTCTCACAAAGACAA+GGG 0.690996 4:-76493080 MsG0480022768.01.T01:CDS
GAGATTGAAGGTGAAAACAG+CGG 0.701289 4:-76493501 MsG0480022768.01.T01:CDS
AATTCTCACAAAGACAAGGG+TGG 0.720526 4:-76493077 MsG0480022768.01.T01:CDS
GCTATAGCATCAGCTCGTAG+GGG 0.722557 4:-76493122 MsG0480022768.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTATTGTTAAATTATTTT+CGG - Chr4:76494649-76494668 MsG0480022768.01.T01:intron 10.0%
!! AAAATATCTATAAATCTCTT+AGG + Chr4:76493368-76493387 None:intergenic 15.0%
!! AAAGAAATATAAAACAATAG+TGG - Chr4:76495982-76496001 MsG0480022768.01.T01:intron 15.0%
!! TCAATTAGAATTGTAATATA+CGG + Chr4:76496562-76496581 None:intergenic 15.0%
!!! AAACTTTTATTGAGTTTAAT+TGG - Chr4:76494091-76494110 MsG0480022768.01.T01:intron 15.0%
!!! GCTAATTTCTATATTTTATT+AGG - Chr4:76496693-76496712 MsG0480022768.01.T01:intron 15.0%
!!! TTATTTTGATGAATTTAGTT+AGG - Chr4:76495942-76495961 MsG0480022768.01.T01:intron 15.0%
!! AATGCATTATAACTAAGAAA+AGG + Chr4:76495678-76495697 None:intergenic 20.0%
!! AGGATAGAGTTTAAATATTA+TGG - Chr4:76493399-76493418 MsG0480022768.01.T01:intron 20.0%
!! ATAATAGTGATATTATGTGT+TGG + Chr4:76494230-76494249 None:intergenic 20.0%
!! ATGAGAAATAACATAGATTT+CGG - Chr4:76493200-76493219 MsG0480022768.01.T01:CDS 20.0%
!! CAAATCAATTAATACCATTA+TGG + Chr4:76496937-76496956 None:intergenic 20.0%
!! CAATTGTTGGTATAATTATT+CGG - Chr4:76493614-76493633 MsG0480022768.01.T01:intron 20.0%
!! CATTTCAAAATTAAGGAATT+TGG - Chr4:76494433-76494452 MsG0480022768.01.T01:intron 20.0%
!! GATAAATTTGAAGATATTTG+AGG + Chr4:76495718-76495737 None:intergenic 20.0%
!! GGATAGAGTTTAAATATTAT+GGG - Chr4:76493400-76493419 MsG0480022768.01.T01:intron 20.0%
!! TAATAGTGATATTATGTGTT+GGG + Chr4:76494229-76494248 None:intergenic 20.0%
!! TGTTATATTAGAAGAATCAA+GGG + Chr4:76496071-76496090 None:intergenic 20.0%
!! TTAGTTAAGTAGTAATGTTA+AGG - Chr4:76494477-76494496 MsG0480022768.01.T01:intron 20.0%
!! TTTCAATGAATTTAACATCA+TGG - Chr4:76493666-76493685 MsG0480022768.01.T01:intron 20.0%
!!! AAAATTAAGGAATTTGGAAT+TGG - Chr4:76494439-76494458 MsG0480022768.01.T01:intron 20.0%
!!! AAATTAAGGAATTTGGAATT+GGG - Chr4:76494440-76494459 MsG0480022768.01.T01:intron 20.0%
!!! AGATATTTTGAATTACTCTA+AGG - Chr4:76493379-76493398 MsG0480022768.01.T01:intron 20.0%
!!! TCATTACATGTCATTTTTTA+TGG - Chr4:76493750-76493769 MsG0480022768.01.T01:CDS 20.0%
!!! TTATTTCTAGAAAATATCAC+AGG + Chr4:76494869-76494888 None:intergenic 20.0%
!!! TTCTTCATGATGAATTTTTT+GGG - Chr4:76496741-76496760 MsG0480022768.01.T01:intron 20.0%
!!! TTTCTTCATGATGAATTTTT+TGG - Chr4:76496740-76496759 MsG0480022768.01.T01:intron 20.0%
! AAAAATTGATTGCTCAACAA+AGG + Chr4:76494810-76494829 None:intergenic 25.0%
! AAAATTGATTGCTCAACAAA+GGG + Chr4:76494809-76494828 None:intergenic 25.0%
! ACATCATATCTTAATTTCTG+TGG + Chr4:76494040-76494059 None:intergenic 25.0%
! AGAGATACCAAATAGAAAAT+GGG + Chr4:76495246-76495265 None:intergenic 25.0%
! AGGAAAAAAACAGAATTTGA+AGG + Chr4:76493922-76493941 None:intergenic 25.0%
! ATAATTGCTAAGTACTCTTA+GGG - Chr4:76493051-76493070 MsG0480022768.01.T01:CDS 25.0%
! ATATCACAGGACAAAAATTA+AGG + Chr4:76494856-76494875 None:intergenic 25.0%
! ATTTATCTGCAGTTTATTGA+AGG - Chr4:76495731-76495750 MsG0480022768.01.T01:CDS 25.0%
! CAAGGAAAGATTATAAGTTA+AGG + Chr4:76494280-76494299 None:intergenic 25.0%
! CAATATACTAATAGTGTGTA+TGG + Chr4:76495353-76495372 None:intergenic 25.0%
! GACAACAAACATAAAAACAA+CGG - Chr4:76496158-76496177 MsG0480022768.01.T01:intron 25.0%
! GATTGTTAATGAAACCATTT+AGG - Chr4:76496584-76496603 MsG0480022768.01.T01:CDS 25.0%
! GCTTACTTATTGAAAGATTT+GGG - Chr4:76495410-76495429 MsG0480022768.01.T01:intron 25.0%
! GGAAAAAAACAGAATTTGAA+GGG + Chr4:76493921-76493940 None:intergenic 25.0%
! GTATGACAATAAAAAGCTAA+TGG + Chr4:76495877-76495896 None:intergenic 25.0%
! GTGTTATATTAGAAGAATCA+AGG + Chr4:76496072-76496091 None:intergenic 25.0%
! TATAATTGCTAAGTACTCTT+AGG - Chr4:76493050-76493069 MsG0480022768.01.T01:CDS 25.0%
! TATCAATGTTTGAATTCCTA+GGG + Chr4:76494940-76494959 None:intergenic 25.0%
! TATCACAGGACAAAAATTAA+GGG + Chr4:76494855-76494874 None:intergenic 25.0%
! TATTGTCATACAAGATATAC+TGG - Chr4:76495886-76495905 MsG0480022768.01.T01:intron 25.0%
! TCAACAAAAGATAGAAAATG+AGG + Chr4:76494003-76494022 None:intergenic 25.0%
! TGCTTACTTATTGAAAGATT+TGG - Chr4:76495409-76495428 MsG0480022768.01.T01:intron 25.0%
! TTAAGATTAAGAGTTGAGTA+AGG + Chr4:76493265-76493284 None:intergenic 25.0%
!! AATTAAGGAATTTGGAATTG+GGG - Chr4:76494441-76494460 MsG0480022768.01.T01:intron 25.0%
!! GATTTGATCCTAATTTTCTA+TGG - Chr4:76495050-76495069 MsG0480022768.01.T01:intron 25.0%
!! GCATAATTAAAGAAGGTTTT+GGG - Chr4:76496300-76496319 MsG0480022768.01.T01:CDS 25.0%
!! GGTGTTACATTTCAAAATTA+AGG - Chr4:76494426-76494445 MsG0480022768.01.T01:intron 25.0%
!! TTATAATCTTTCCTTGTTTC+AGG - Chr4:76494284-76494303 MsG0480022768.01.T01:intron 25.0%
!! TTTTGATGAATTTAGTTAGG+AGG - Chr4:76495945-76495964 MsG0480022768.01.T01:intron 25.0%
!!! AATGGTATTAATTGATTTGC+AGG - Chr4:76496938-76496957 MsG0480022768.01.T01:intron 25.0%
!!! ACACTGCATAATTTTTTGAA+CGG - Chr4:76496088-76496107 MsG0480022768.01.T01:intron 25.0%
!!! ATTTAAAGTTTTCATTGCAC+TGG - Chr4:76496397-76496416 MsG0480022768.01.T01:intron 25.0%
!!! GTTATTTTGACATTATGTGT+TGG - Chr4:76494361-76494380 MsG0480022768.01.T01:CDS 25.0%
AAAGATCTTAACATGCAAAC+AGG + Chr4:76494988-76495007 None:intergenic 30.0%
AACAAATAGACTCATCTGTT+AGG - Chr4:76496018-76496037 MsG0480022768.01.T01:intron 30.0%
AAGATGAGGAAGATATTCAA+AGG - Chr4:76495635-76495654 MsG0480022768.01.T01:intron 30.0%
AATGCAGAACAAACATTAGA+CGG + Chr4:76494574-76494593 None:intergenic 30.0%
ACAAATAGACTCATCTGTTA+GGG - Chr4:76496019-76496038 MsG0480022768.01.T01:intron 30.0%
ACAGATCTTAGATAAACTAC+AGG + Chr4:76496488-76496507 None:intergenic 30.0%
ACATCTTGTTCGTTTAGATA+AGG - Chr4:76493170-76493189 MsG0480022768.01.T01:CDS 30.0%
AGATGAGGAAGATATTCAAA+GGG - Chr4:76495636-76495655 MsG0480022768.01.T01:intron 30.0%
AGCATTTGCCATAGAAAATT+AGG + Chr4:76495061-76495080 None:intergenic 30.0%
ATAACATAGATTTCGGATTG+TGG - Chr4:76493207-76493226 MsG0480022768.01.T01:CDS 30.0%
ATAACGACGATTCTAATGAA+GGG - Chr4:76495522-76495541 MsG0480022768.01.T01:intron 30.0%
ATTGAACCTAAAACAGAAAG+AGG + Chr4:76495477-76495496 None:intergenic 30.0%
ATTGCTTGAATTTGTATGCT+TGG - Chr4:76493534-76493553 MsG0480022768.01.T01:CDS 30.0%
ATTGGTATTACATTAGTACC+AGG - Chr4:76493110-76493129 MsG0480022768.01.T01:CDS 30.0%
CAAAACCAGTGTAAAATATG+TGG + Chr4:76493507-76493526 None:intergenic 30.0%
CAAATCAAGTAGCATGAAAA+AGG + Chr4:76495036-76495055 None:intergenic 30.0%
CAGAGATACCAAATAGAAAA+TGG + Chr4:76495247-76495266 None:intergenic 30.0%
CCTTTACATGAAAACCATAA+TGG - Chr4:76496920-76496939 MsG0480022768.01.T01:intron 30.0%
CTAATGTTTGTTCTGCATTA+AGG - Chr4:76494575-76494594 MsG0480022768.01.T01:CDS 30.0%
GGGGAAAAATTAACTACAAA+AGG - Chr4:76496109-76496128 MsG0480022768.01.T01:intron 30.0%
GTATCAATGTTTGAATTCCT+AGG + Chr4:76494941-76494960 None:intergenic 30.0%
TCAAAGTTCAAACCATTTAC+AGG - Chr4:76496136-76496155 MsG0480022768.01.T01:intron 30.0%
TCATACAAGCATGAAATCAA+AGG + Chr4:76493942-76493961 None:intergenic 30.0%
TGATATTCTAAGTGAACTGT+GGG - Chr4:76496446-76496465 MsG0480022768.01.T01:intron 30.0%
TGCATGTTAAGATCTTTGAT+AGG - Chr4:76494991-76495010 MsG0480022768.01.T01:intron 30.0%
TTGAACCTAAAACAGAAAGA+GGG + Chr4:76495476-76495495 None:intergenic 30.0%
TTTCTATTTGGTATCTCTGA+TGG - Chr4:76495248-76495267 MsG0480022768.01.T01:intron 30.0%
TTTGTATAACATTTGACGCA+TGG - Chr4:76493080-76493099 MsG0480022768.01.T01:CDS 30.0%
! AATGAAACCATTTAGGATGA+GGG - Chr4:76496591-76496610 MsG0480022768.01.T01:CDS 30.0%
! ATACAAGATATACTGGCTAT+GGG - Chr4:76495893-76495912 MsG0480022768.01.T01:intron 30.0%
! ATCCAATTGCATTTTCATCT+TGG + Chr4:76496807-76496826 None:intergenic 30.0%
! ATTAAGGAATTTGGAATTGG+GGG - Chr4:76494442-76494461 MsG0480022768.01.T01:intron 30.0%
! CCATTATGGTTTTCATGTAA+AGG + Chr4:76496923-76496942 None:intergenic 30.0%
! GGCATAATTAAAGAAGGTTT+TGG - Chr4:76496299-76496318 MsG0480022768.01.T01:CDS 30.0%
! TAATGAAACCATTTAGGATG+AGG - Chr4:76496590-76496609 MsG0480022768.01.T01:CDS 30.0%
! TAATTGGTAGTAGTATGTAC+TGG - Chr4:76494107-76494126 MsG0480022768.01.T01:intron 30.0%
! TCCAATTGCATTTTCATCTT+GGG + Chr4:76496806-76496825 None:intergenic 30.0%
! TTCTGATAGTGAAGATAAGA+TGG - Chr4:76495775-76495794 MsG0480022768.01.T01:CDS 30.0%
!! TATGTTTGTTGTCCTGTAAA+TGG + Chr4:76496151-76496170 None:intergenic 30.0%
!! TCTTCAAGTTTTTCAGAAAG+AGG - Chr4:76494332-76494351 MsG0480022768.01.T01:intron 30.0%
!! TTTGTTCTTAAGCTTGCTTT+TGG - Chr4:76493448-76493467 MsG0480022768.01.T01:intron 30.0%
!!! ACAGTTTTTGAGACAATTGT+TGG - Chr4:76493601-76493620 MsG0480022768.01.T01:intron 30.0%
!!! ACTGCATAATTTTTTGAACG+GGG - Chr4:76496090-76496109 MsG0480022768.01.T01:intron 30.0%
!!! CACATATTTTACACTGGTTT+TGG - Chr4:76493505-76493524 MsG0480022768.01.T01:CDS 30.0%
!!! CACTGCATAATTTTTTGAAC+GGG - Chr4:76496089-76496108 MsG0480022768.01.T01:intron 30.0%
!!! TTTTTTATGGCTTTTACCTC+TGG - Chr4:76493763-76493782 MsG0480022768.01.T01:CDS 30.0%
AAAATTAAGGGACAAGACAC+AGG + Chr4:76494843-76494862 None:intergenic 35.0%
AAGGATAGACACAGGAATAT+AGG - Chr4:76494594-76494613 MsG0480022768.01.T01:CDS 35.0%
AAGGGACATAATACCATACA+AGG + Chr4:76493903-76493922 None:intergenic 35.0%
ACATGAAAGTCATGGAAAAG+AGG - Chr4:76496614-76496633 MsG0480022768.01.T01:CDS 35.0%
ACCAGTGTAAAATATGTGGA+AGG + Chr4:76493503-76493522 None:intergenic 35.0%
ACGAACAAGATGTAAAAGCA+AGG + Chr4:76493163-76493182 None:intergenic 35.0%
AGGAAGATATTCAAAGGGTA+TGG - Chr4:76495641-76495660 MsG0480022768.01.T01:intron 35.0%
AGGAATTCTCACAAAGACAA+GGG - Chr4:76497059-76497078 MsG0480022768.01.T01:intron 35.0%
ATAAAGCCTAGAAAGCAAGT+TGG + Chr4:76496369-76496388 None:intergenic 35.0%
ATTATGCCGTGTCATATCAT+AGG + Chr4:76496287-76496306 None:intergenic 35.0%
ATTGTCTCAAAAACTGTCTC+TGG + Chr4:76493598-76493617 None:intergenic 35.0%
CAAATAGACTCATCTGTTAG+GGG - Chr4:76496020-76496039 MsG0480022768.01.T01:intron 35.0%
CCAGTGTAAAATATGTGGAA+GGG + Chr4:76493502-76493521 None:intergenic 35.0%
CGAACAAGATGTAAAAGCAA+GGG + Chr4:76493162-76493181 None:intergenic 35.0%
GATAACGACGATTCTAATGA+AGG - Chr4:76495521-76495540 MsG0480022768.01.T01:intron 35.0%
GCTCTTACATCTTTGCATTA+CGG + Chr4:76493875-76493894 None:intergenic 35.0%
GGACAAATTATCAAGACAAC+TGG + Chr4:76495455-76495474 None:intergenic 35.0%
GGATTGTATATCTAGGCTTT+AGG + Chr4:76496189-76496208 None:intergenic 35.0%
GTGATATTCTAAGTGAACTG+TGG - Chr4:76496445-76496464 MsG0480022768.01.T01:intron 35.0%
TAGGTCATCTCAAAATGCTA+AGG - Chr4:76497085-76497104 MsG0480022768.01.T01:intron 35.0%
TCATGTAAAGGCTAGATAAC+AGG + Chr4:76496911-76496930 None:intergenic 35.0%
TCCCAAGATGAAAATGCAAT+TGG - Chr4:76496802-76496821 MsG0480022768.01.T01:intron 35.0%
TCTCAACTGCTAGATATGTA+AGG + Chr4:76494503-76494522 None:intergenic 35.0%
TGACACGGCATAATTAAAGA+AGG - Chr4:76496293-76496312 MsG0480022768.01.T01:CDS 35.0%
TGTTGGTATAATTATTCGGC+TGG - Chr4:76493618-76493637 MsG0480022768.01.T01:intron 35.0%
TTATGCCGTGTCATATCATA+GGG + Chr4:76496286-76496305 None:intergenic 35.0%
TTCTTTACATTTGTCAGAGC+AGG - Chr4:76495843-76495862 MsG0480022768.01.T01:intron 35.0%
TTTACAGCATTCCTTGTTAG+CGG + Chr4:76496780-76496799 None:intergenic 35.0%
TTTCTTCATCGTCAATCTAC+AGG + Chr4:76493809-76493828 None:intergenic 35.0%
TTTGCTTAGGACATTAGTGT+TGG - Chr4:76496325-76496344 MsG0480022768.01.T01:CDS 35.0%
! AACATGGCCCATTTTCTATT+TGG - Chr4:76495236-76495255 MsG0480022768.01.T01:intron 35.0%
! AAGATATTCAAAGGGTATGG+TGG - Chr4:76495644-76495663 MsG0480022768.01.T01:intron 35.0%
! ACATTAGTGTTGGAGAACTT+AGG - Chr4:76496335-76496354 MsG0480022768.01.T01:intron 35.0%
! CATACAAGATATACTGGCTA+TGG - Chr4:76495892-76495911 MsG0480022768.01.T01:intron 35.0%
! GAAAGATTTGGGTTTGTCTT+TGG - Chr4:76495421-76495440 MsG0480022768.01.T01:intron 35.0%
! GAGAACTGTTTGAGTTATCT+GGG + Chr4:76494787-76494806 None:intergenic 35.0%
! TTTGTCCCTCTTTCTGTTTT+AGG - Chr4:76495468-76495487 MsG0480022768.01.T01:intron 35.0%
!! GGTATTAATTGATTTGCAGG+AGG - Chr4:76496941-76496960 MsG0480022768.01.T01:intron 35.0%
!! TCTTAAGCTTGCTTTTGGTT+TGG - Chr4:76493453-76493472 MsG0480022768.01.T01:intron 35.0%
!! TGGCTTTGGTAAAAAAGATG+AGG - Chr4:76495621-76495640 MsG0480022768.01.T01:intron 35.0%
!! TGTGATTGATTTTCCGCAAA+TGG - Chr4:76493836-76493855 MsG0480022768.01.T01:intron 35.0%
!! TTGTATATCTAGGCTTTAGG+TGG + Chr4:76496186-76496205 None:intergenic 35.0%
!!! AAGGTTTTGGGTATTTGCTT+AGG - Chr4:76496312-76496331 MsG0480022768.01.T01:CDS 35.0%
AAGAGTTGAGTAAGGCTTAG+TGG + Chr4:76493257-76493276 None:intergenic 40.0%
AATTCCTAGGGATAAGACAC+AGG + Chr4:76494928-76494947 None:intergenic 40.0%
AATTCTCACAAAGACAAGGG+TGG - Chr4:76497062-76497081 MsG0480022768.01.T01:intron 40.0%
ACTCGCTGGATTGTATATCT+AGG + Chr4:76496196-76496215 None:intergenic 40.0%
ACTGGATGTGAGATTAGTGT+GGG - Chr4:76496415-76496434 MsG0480022768.01.T01:intron 40.0%
ACTTCATCCTAGTTTCGTCT+TGG + Chr4:76496251-76496270 None:intergenic 40.0%
ATTCCTTAACATGTGCCCTT+AGG - Chr4:76495204-76495223 MsG0480022768.01.T01:intron 40.0%
CAAGATGTAAAAGCAAGGGA+CGG + Chr4:76493158-76493177 None:intergenic 40.0%
CAAGTAGCATGAAAAAGGCA+AGG + Chr4:76495031-76495050 None:intergenic 40.0%
CAGGAATTCTCACAAAGACA+AGG - Chr4:76497058-76497077 MsG0480022768.01.T01:intron 40.0%
CATCGTCAATCTACAGGAAA+CGG + Chr4:76493803-76493822 None:intergenic 40.0%
CCAAATGAGCAACTTTGCAT+TGG + Chr4:76495184-76495203 None:intergenic 40.0%
CCAATGCAAAGTTGCTCATT+TGG - Chr4:76495181-76495200 MsG0480022768.01.T01:intron 40.0%
CTCATCCCTATGATATGACA+CGG - Chr4:76496278-76496297 MsG0480022768.01.T01:CDS 40.0%
CTTGTCTTTGTGAGAATTCC+TGG + Chr4:76497060-76497079 None:intergenic 40.0%
GAGATTGAAGGTGAAAACAG+CGG - Chr4:76496638-76496657 MsG0480022768.01.T01:CDS 40.0%
GTAAAATATGTGGAAGGGAG+TGG + Chr4:76493497-76493516 None:intergenic 40.0%
GTAAGAGCTTCTTCCTTGTA+TGG - Chr4:76493887-76493906 MsG0480022768.01.T01:intron 40.0%
GTGAAGATAAGATGGTGACT+TGG - Chr4:76495783-76495802 MsG0480022768.01.T01:CDS 40.0%
TCTGCATTAAGGATAGACAC+AGG - Chr4:76494586-76494605 MsG0480022768.01.T01:CDS 40.0%
TGAAAACAGCGGATCTGAAA+AGG - Chr4:76496649-76496668 MsG0480022768.01.T01:CDS 40.0%
TGGAAAAGAGGAGAGATTGA+AGG - Chr4:76496626-76496645 MsG0480022768.01.T01:CDS 40.0%
TTACAGCATTCCTTGTTAGC+GGG + Chr4:76496779-76496798 None:intergenic 40.0%
TTCAAATGCAAATGAGCAGC+TGG - Chr4:76497108-76497127 MsG0480022768.01.T01:intron 40.0%
TTCATGTCCCTCATCCTAAA+TGG + Chr4:76496601-76496620 None:intergenic 40.0%
TTCCTTAACATGTGCCCTTA+GGG - Chr4:76495205-76495224 MsG0480022768.01.T01:intron 40.0%
TTGACGCATGGTCTATGAAT+TGG - Chr4:76493092-76493111 MsG0480022768.01.T01:CDS 40.0%
TTGCTAAGTACTCTTAGGGA+TGG - Chr4:76493055-76493074 MsG0480022768.01.T01:CDS 40.0%
! ACTGCTTGGTTTGAGAAGAA+TGG - Chr4:76494397-76494416 MsG0480022768.01.T01:CDS 40.0%
! CCCTTCCACATATTTTACAC+TGG - Chr4:76493499-76493518 MsG0480022768.01.T01:CDS 40.0%
! CGATCAAAGTACCTGAAACA+AGG + Chr4:76494298-76494317 None:intergenic 40.0%
! CTGCTTGGTTTGAGAAGAAT+GGG - Chr4:76494398-76494417 MsG0480022768.01.T01:CDS 40.0%
! CTTGCTTTCTAGGCTTTATG+AGG - Chr4:76496370-76496389 MsG0480022768.01.T01:intron 40.0%
! GATATACTGGCTATGGGAAA+TGG - Chr4:76495899-76495918 MsG0480022768.01.T01:intron 40.0%
! GGAGAACTGTTTGAGTTATC+TGG + Chr4:76494788-76494807 None:intergenic 40.0%
! GGATATCCAACTTGCTTTCT+AGG - Chr4:76496360-76496379 MsG0480022768.01.T01:intron 40.0%
! GTTTGAGTTATCTGGGAAAG+AGG + Chr4:76494780-76494799 None:intergenic 40.0%
! TAGTGTTGGAGAACTTAGGA+AGG - Chr4:76496339-76496358 MsG0480022768.01.T01:intron 40.0%
!! AATTGATTTGCAGGAGGAAG+TGG - Chr4:76496947-76496966 MsG0480022768.01.T01:intron 40.0%
!! ATTGATTTGCAGGAGGAAGT+GGG - Chr4:76496948-76496967 MsG0480022768.01.T01:intron 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG + Chr4:76495222-76495241 None:intergenic 40.0%
!!! CAGTGCTGGTTTTCTAGATA+AGG - Chr4:76495585-76495604 MsG0480022768.01.T01:intron 40.0%
AAAGGAAGATGCAAGCGACA+CGG - Chr4:76496667-76496686 MsG0480022768.01.T01:CDS 45.0%
AAATATGTGGAAGGGAGTGG+TGG + Chr4:76493494-76493513 None:intergenic 45.0%
ATTATTCGGCTGGCAGAACA+TGG - Chr4:76493628-76493647 MsG0480022768.01.T01:intron 45.0%
ATTCCTTGTTAGCGGGGATA+CGG + Chr4:76496772-76496791 None:intergenic 45.0%
CAAACATTAGACGGCACAGA+AGG + Chr4:76494565-76494584 None:intergenic 45.0%
CAATCCAGCGAGTTAGTACA+AGG - Chr4:76496203-76496222 MsG0480022768.01.T01:intron 45.0%
CACTGGATGTGAGATTAGTG+TGG - Chr4:76496414-76496433 MsG0480022768.01.T01:intron 45.0%
CCTTAGGGCACAAGTTAACA+TGG - Chr4:76495220-76495239 MsG0480022768.01.T01:intron 45.0%
CGATTCTAATGAAGGGAGAG+AGG - Chr4:76495529-76495548 MsG0480022768.01.T01:intron 45.0%
GATGAGGGACATGAAAGTCA+TGG - Chr4:76496606-76496625 MsG0480022768.01.T01:CDS 45.0%
GGTTTGAGAAGAATGGGAGA+GGG - Chr4:76494404-76494423 MsG0480022768.01.T01:intron 45.0%
GTCAGATCTCAAGCATATCC+TGG + Chr4:76493131-76493150 None:intergenic 45.0%
GTGTTCGTGATTTCACTGCT+TGG - Chr4:76494383-76494402 MsG0480022768.01.T01:CDS 45.0%
GTTATCTGGGAAAGAGGAGA+TGG + Chr4:76494774-76494793 None:intergenic 45.0%
GTTTGAGAAGAATGGGAGAG+GGG - Chr4:76494405-76494424 MsG0480022768.01.T01:intron 45.0%
TAATGAAGGGAGAGAGGAAG+CGG - Chr4:76495535-76495554 MsG0480022768.01.T01:intron 45.0%
TAATGCTGACAAGTGCACAC+AGG + Chr4:76493705-76493724 None:intergenic 45.0%
TACAGCATTCCTTGTTAGCG+GGG + Chr4:76496778-76496797 None:intergenic 45.0%
TAGTCCTGTGTCTTATCCCT+AGG - Chr4:76494921-76494940 MsG0480022768.01.T01:intron 45.0%
TCATCCTAGTTTCGTCTTGG+AGG + Chr4:76496248-76496267 None:intergenic 45.0%
TCCTTAACATGTGCCCTCAA+GGG + Chr4:76495092-76495111 None:intergenic 45.0%
TCTGCAGTTTATTGAAGGCG+AGG - Chr4:76495736-76495755 MsG0480022768.01.T01:CDS 45.0%
TCTTCAATAGACAGCAGTGC+TGG - Chr4:76495571-76495590 MsG0480022768.01.T01:intron 45.0%
TGCTATAGCATCAGCTCGTA+GGG - Chr4:76497016-76497035 MsG0480022768.01.T01:intron 45.0%
TGGTTTGAGAAGAATGGGAG+AGG - Chr4:76494403-76494422 MsG0480022768.01.T01:intron 45.0%
TGTAAAAGCAAGGGACGGAA+TGG + Chr4:76493153-76493172 None:intergenic 45.0%
TTCCTTAACATGTGCCCTCA+AGG + Chr4:76495093-76495112 None:intergenic 45.0%
! AATGCTAACTTGTGCCCTTG+AGG - Chr4:76495075-76495094 MsG0480022768.01.T01:intron 45.0%
! ATGCTAACTTGTGCCCTTGA+GGG - Chr4:76495076-76495095 MsG0480022768.01.T01:intron 45.0%
!! CCATGTTAACTTGTGCCCTA+AGG + Chr4:76495223-76495242 None:intergenic 45.0%
!! GATAAGGAACTTGCTGCTAG+TGG - Chr4:76495601-76495620 MsG0480022768.01.T01:intron 45.0%
!! TTATATTTCATAATTTAATT+AGG + Chr4:76493318-76493337 None:intergenic 5.0%
AAAGAGGAGATGGAGGAAGG+AGG + Chr4:76494764-76494783 None:intergenic 50.0%
AAGAGGAGATGGAGGAAGGA+GGG + Chr4:76494763-76494782 None:intergenic 50.0%
AATGAAGGGAGAGAGGAAGC+GGG - Chr4:76495536-76495555 MsG0480022768.01.T01:intron 50.0%
ATCTGGGAAAGAGGAGATGG+AGG + Chr4:76494771-76494790 None:intergenic 50.0%
CTCACAAAGACAAGGGTGGT+AGG - Chr4:76497066-76497085 MsG0480022768.01.T01:intron 50.0%
GACGGAAGAAACTTGGATCC+AGG - Chr4:76497039-76497058 MsG0480022768.01.T01:intron 50.0%
GAGTTAGTACAAGGCCTCGA+TGG - Chr4:76496212-76496231 MsG0480022768.01.T01:intron 50.0%
GCAGTTTATTGAAGGCGAGG+TGG - Chr4:76495739-76495758 MsG0480022768.01.T01:CDS 50.0%
GCTATAGCATCAGCTCGTAG+GGG - Chr4:76497017-76497036 MsG0480022768.01.T01:intron 50.0%
GGAGTCAGATTGTAAGCCAG+AGG + Chr4:76493782-76493801 None:intergenic 50.0%
GGCATCAGCAGTTTGCAGAA+AGG + Chr4:76496050-76496069 None:intergenic 50.0%
GTGCTATAGCATCAGCTCGT+AGG - Chr4:76497015-76497034 MsG0480022768.01.T01:intron 50.0%
GTTCTGCAAATGCAGCGTTC+AGG - Chr4:76493556-76493575 MsG0480022768.01.T01:intron 50.0%
TCCACCTCCAAGACGAAACT+AGG - Chr4:76496241-76496260 MsG0480022768.01.T01:intron 50.0%
TCCTAGTTTCGTCTTGGAGG+TGG + Chr4:76496245-76496264 None:intergenic 50.0%
TGCGACACAGACACCATTTG+CGG + Chr4:76493852-76493871 None:intergenic 50.0%
TTACCGTATCCCCGCTAACA+AGG - Chr4:76496766-76496785 MsG0480022768.01.T01:intron 50.0%
! TGCCCTAAGGGCACATGTTA+AGG + Chr4:76495210-76495229 None:intergenic 50.0%
!! GAACTTGCTGCTAGTGGCTT+TGG - Chr4:76495607-76495626 MsG0480022768.01.T01:intron 50.0%
CGTAGGGGACGGAAGAAACT+TGG - Chr4:76497032-76497051 MsG0480022768.01.T01:intron 55.0%
GGGAAAGAGGAGATGGAGGA+AGG + Chr4:76494767-76494786 None:intergenic 55.0%
TAGCATCAGCTCGTAGGGGA+CGG - Chr4:76497021-76497040 MsG0480022768.01.T01:intron 55.0%
! GAGGCCTTGTACTAACTCGC+TGG + Chr4:76496210-76496229 None:intergenic 55.0%
! GCCCTTGAGGGCACATGTTA+AGG - Chr4:76495088-76495107 MsG0480022768.01.T01:intron 55.0%
!! GAGGTGGAAGAGTACCATCG+AGG + Chr4:76496229-76496248 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr4 gene 76493028 76497133 76493028 ID=MsG0480022768.01;Name=MsG0480022768.01
Chr4 mRNA 76493028 76497133 76493028 ID=MsG0480022768.01.T01;Parent=MsG0480022768.01;Name=MsG0480022768.01.T01;_AED=0.50;_eAED=0.65;_QI=0|0.37|0.22|1|0.87|0.77|9|0|348
Chr4 exon 76497116 76497133 76497116 ID=MsG0480022768.01.T01:exon:23361;Parent=MsG0480022768.01.T01
Chr4 exon 76496474 76496701 76496474 ID=MsG0480022768.01.T01:exon:23360;Parent=MsG0480022768.01.T01
Chr4 exon 76496275 76496348 76496275 ID=MsG0480022768.01.T01:exon:23359;Parent=MsG0480022768.01.T01
Chr4 exon 76495691 76495855 76495691 ID=MsG0480022768.01.T01:exon:23358;Parent=MsG0480022768.01.T01
Chr4 exon 76494504 76494618 76494504 ID=MsG0480022768.01.T01:exon:23357;Parent=MsG0480022768.01.T01
Chr4 exon 76494357 76494418 76494357 ID=MsG0480022768.01.T01:exon:23356;Parent=MsG0480022768.01.T01
Chr4 exon 76493740 76493827 76493740 ID=MsG0480022768.01.T01:exon:23355;Parent=MsG0480022768.01.T01
Chr4 exon 76493473 76493555 76493473 ID=MsG0480022768.01.T01:exon:23354;Parent=MsG0480022768.01.T01
Chr4 exon 76493028 76493241 76493028 ID=MsG0480022768.01.T01:exon:23353;Parent=MsG0480022768.01.T01
Chr4 CDS 76497116 76497133 76497116 ID=MsG0480022768.01.T01:cds;Parent=MsG0480022768.01.T01
Chr4 CDS 76496474 76496701 76496474 ID=MsG0480022768.01.T01:cds;Parent=MsG0480022768.01.T01
Chr4 CDS 76496275 76496348 76496275 ID=MsG0480022768.01.T01:cds;Parent=MsG0480022768.01.T01
Chr4 CDS 76495691 76495855 76495691 ID=MsG0480022768.01.T01:cds;Parent=MsG0480022768.01.T01
Chr4 CDS 76494504 76494618 76494504 ID=MsG0480022768.01.T01:cds;Parent=MsG0480022768.01.T01
Chr4 CDS 76494357 76494418 76494357 ID=MsG0480022768.01.T01:cds;Parent=MsG0480022768.01.T01
Chr4 CDS 76493740 76493827 76493740 ID=MsG0480022768.01.T01:cds;Parent=MsG0480022768.01.T01
Chr4 CDS 76493473 76493555 76493473 ID=MsG0480022768.01.T01:cds;Parent=MsG0480022768.01.T01
Chr4 CDS 76493028 76493241 76493028 ID=MsG0480022768.01.T01:cds;Parent=MsG0480022768.01.T01
Gene Sequence

>MsG0480022768.01.T01

ATGGTGTTGGATATTGCGCTTGCTTTTGGTTTGGACTTTGTAGTTTGTACCACCACTCCCTTCCACATATTTTACACTGGTTTTGGTGAACAATTGCTTGAATTTGTATGCTTGGTTCTGCAAATGCAGCGTTCAGGTGAAGCAGTTACAAAACCAGAGACAGTTTTTGAGACAATTGTTGGTATAATTATTCGGCTGGCAGAACATGGTCTCATTCATTGTGATTTCAATGAATTTAACATCATGATTGACGATGAAGAAAAAATTACTGTGATTGATTTTCCGCAAATGGTGTCTGTGTCGCACCGTAATGCAAAGATGTACTTTGATCGTGATGTTGAATGTATCTTCAAGTTTTTCAGAAAGAGGTTTGTAGTTATTTTGACATTATGTGTTGGTGTTCGTGATTTCACTGCTTGGTTTGAGAAGAATGGGAGAGGGGTGTTACATTTCAAAATTAAGGAATTTGGAATTGGGGGAGTAAAGGAGAGAGGAAGCGGGAAAACTCTGTTTTCTTCAATAGACAGCAGTGCTGGTTTTCTAGATAAGGAACTTGCTGCTAGTGGCTTTGGTAAAAAAGATGAGGAAGATATTCAAAGGTTTATTGAAGGCGAGGTGGAGAGTGATACAAATTCTGATAGTGAAGATAAGATGGTGACTTGGACATTAGTGTTGGAGAACTTAGGAAGGATATCCAACTTGCTTTCTAGGCTTTATGAGGATGAATTTAAAGTTTTCATTGCACTGGATGATGAGGGACATGAAAGTCATGGAAAAGAGGAGAGATTGAAGGTGAAAACAGCGGATCTGAAAAGGAAGATGCAAGCGACACGCCTTTACATGAAAACCATAATGGTATTAATTGATTTGCAGGAGGAAGTGGGAATTGAAGCTGAACTCACAAAGAGCTTGAGTAAGCAAAGACAAAGTGCTATAGCATCAGCTCGTAGGGGACGGAAGAAACTTGGATCCAGGAATTCTCACAAAGACAAGGGTGGTAGGTCATCTCAAAATGCTAAGGTTCAAATGCAAATGAGCAGCTGGTGA

Protein sequence

>MsG0480022768.01.T01

MVLDIALAFGLDFVVCTTTPFHIFYTGFGEQLLEFVCLVLQMQRSGEAVTKPETVFETIVGIIIRLAEHGLIHCDFNEFNIMIDDEEKITVIDFPQMVSVSHRNAKMYFDRDVECIFKFFRKRFVVILTLCVGVRDFTAWFEKNGRGVLHFKIKEFGIGGVKERGSGKTLFSSIDSSAGFLDKELAASGFGKKDEEDIQRFIEGEVESDTNSDSEDKMVTWTLVLENLGRISNLLSRLYEDEFKVFIALDDEGHESHGKEERLKVKTADLKRKMQATRLYMKTIMVLIDLQEEVGIEAELTKSLSKQRQSAIASARRGRKKLGSRNSHKDKGGRSSQNAKVQMQMSSW*