AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010532.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010532.01.T01 MTR_2g086970 93.947 380 8 3 1 379 1 366 0.0 701
MsG0280010532.01.T01 MTR_7g105250 55.381 381 135 10 1 379 1 348 3.67e-113 334
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010532.01.T01 AT1G08370 59.794 388 124 8 1 378 1 366 5.05e-140 403

Find 140 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCATAACAATTTGTAAAAT+TGG 0.149087 2:+71045673 MsG0280010532.01.T01:three_prime_UTR
TGAACCCTAGAATTGAAAAT+TGG 0.165117 2:-71040647 None:intergenic
TGTTAAGAGGTTTGAAATTT+TGG 0.181129 2:+71040961 MsG0280010532.01.T01:CDS
TCTGCTACAATTTCTTCTTC+TGG 0.192913 2:+71044835 MsG0280010532.01.T01:CDS
AGAATTGAAAATTGGGGATT+AGG 0.231863 2:-71040639 None:intergenic
GTTGGCATAAGCAGAAAATT+TGG 0.247413 2:+71042376 MsG0280010532.01.T01:intron
GGACAATCAATTCATTGATA+TGG 0.252052 2:+71045499 MsG0280010532.01.T01:intron
CTCAAGAAGTGAATGGTATT+TGG 0.265191 2:+71042465 MsG0280010532.01.T01:CDS
CTGCTACAATTTCTTCTTCT+GGG 0.274194 2:+71044836 MsG0280010532.01.T01:CDS
GAATTGAAAATTGGGGATTA+GGG 0.310652 2:-71040638 None:intergenic
TGGGGATTAGGGTTAGGGTT+AGG 0.310683 2:-71040627 None:intergenic
TGCTCTTCTGGTGCTCGTTC+AGG 0.312100 2:+71045221 MsG0280010532.01.T01:CDS
GGTCCAGATGAGTGGTTATA+GGG 0.322140 2:+71045817 MsG0280010532.01.T01:three_prime_UTR
AAAGGTCCGAGATGCTCTTC+TGG 0.324060 2:+71045209 MsG0280010532.01.T01:CDS
TCGTTTATTGCAGGCGGCTA+TGG 0.334449 2:+71044762 MsG0280010532.01.T01:intron
GTCAGTATATATAGTTGATA+TGG 0.340044 2:-71045771 None:intergenic
AGGTCCAGATGAGTGGTTAT+AGG 0.353308 2:+71045816 MsG0280010532.01.T01:three_prime_UTR
TTCTGAGACATTGTTGCGTT+AGG 0.354119 2:-71040673 None:intergenic
CAAGGTGCCTCCGAAGTTAA+AGG 0.354297 2:+71043052 MsG0280010532.01.T01:CDS
ATCACAATAAACTGAAATCT+TGG 0.354748 2:-71041100 None:intergenic
GGGGATTAGGGTTAGGGTTA+GGG 0.354848 2:-71040626 None:intergenic
ACCGAAACATTTAAAAGTTT+AGG 0.354885 2:-71045652 None:intergenic
GAAAATTGGGGATTAGGGTT+AGG 0.356060 2:-71040633 None:intergenic
TGAGAAGCTTAGTGCTTTGT+TGG 0.358743 2:-71040720 None:intergenic
GGATTTCGAGTATGAAGTTC+AGG 0.364421 2:+71042415 MsG0280010532.01.T01:CDS
GAACCCTAGAATTGAAAATT+GGG 0.367339 2:-71040646 None:intergenic
GATCTCTCTTTGTTGTTAAG+AGG 0.370391 2:+71040948 MsG0280010532.01.T01:CDS
GTGCTTTGTTGGTCGAGATT+TGG 0.371049 2:-71040709 None:intergenic
GGTGGAGTTGGAGGTGGAAA+TGG 0.371979 2:-71045132 None:intergenic
TTGCAGTGAGTTTGAGGAAC+TGG 0.375437 2:+71043852 MsG0280010532.01.T01:intron
GCAAGTGAAGGTGGTGGAGT+TGG 0.385923 2:-71045144 None:intergenic
TGGACTCAGGAGCATCATGC+TGG 0.387575 2:-71044939 None:intergenic
CATTTATTGCAGTGAGTTTG+AGG 0.395892 2:+71043846 MsG0280010532.01.T01:intron
TTTATAAAGGATGGATCATC+AGG 0.396436 2:-71043952 None:intergenic
TCTCTAGAAATAGCTGGGTT+TGG 0.396689 2:-71045186 None:intergenic
GGAAACTAGCAAGATCAAAA+TGG 0.406597 2:-71045712 None:intergenic
TACACTGAAGAAATTTATAA+AGG 0.413641 2:-71043965 None:intergenic
GTACAAGTACAACGACCTTA+TGG 0.413886 2:+71045093 MsG0280010532.01.T01:CDS
TTGCAGGCGGCTATGGGTAT+CGG 0.417327 2:+71044769 MsG0280010532.01.T01:intron
GTGATGAATCGTCGCAATAC+TGG 0.422666 2:+71041118 MsG0280010532.01.T01:CDS
AAAATTGGGGATTAGGGTTA+GGG 0.424737 2:-71040632 None:intergenic
GCATTTCTATACAATAGATA+TGG 0.429283 2:-71042440 None:intergenic
TGTGGCTCGGCTGCTGCTGT+TGG 0.433262 2:-71044959 None:intergenic
AAGTGGAGGGGCAGTAGGTA+TGG 0.435273 2:-71045055 None:intergenic
TCTGAGACATTGTTGCGTTA+GGG 0.437381 2:-71040672 None:intergenic
CGTTTATTGCAGGCGGCTAT+GGG 0.438250 2:+71044763 MsG0280010532.01.T01:intron
AAGGTTGGCAGTGGCCCAAC+TGG 0.444331 2:-71044877 None:intergenic
CCCAGCTATTTCTAGAGAAA+AGG 0.446855 2:+71045191 MsG0280010532.01.T01:CDS
GTAGATGAGACCTTTAACTT+CGG 0.449889 2:-71043062 None:intergenic
TGCAGGCGGCTATGGGTATC+GGG 0.455446 2:+71044770 MsG0280010532.01.T01:intron
GGAGTAGATGTTGGAAGAGA+TGG 0.461702 2:-71044907 None:intergenic
GTTTGGAAGGGGAGAAGAAA+CGG 0.465407 2:-71045169 None:intergenic
AGTGAAGGTGGTGGAGTTGG+AGG 0.465872 2:-71045141 None:intergenic
GAAGGTGGTGGAGTTGGAGG+TGG 0.470507 2:-71045138 None:intergenic
AGAAGGCTTCACAAGATTTG+TGG 0.471767 2:-71044977 None:intergenic
TTTGGAAGGGGAGAAGAAAC+GGG 0.474369 2:-71045168 None:intergenic
GGATGAAGTGGAGGGGCAGT+AGG 0.474418 2:-71045060 None:intergenic
TCATCATTGCAGCAGAAGAA+AGG 0.475545 2:-71045014 None:intergenic
CGGCTGCTGCTGTTGGACTC+AGG 0.475688 2:-71044952 None:intergenic
GCCCCTCCACTTCATCCTAC+TGG 0.476559 2:+71045066 MsG0280010532.01.T01:CDS
CACCCCTATAACCACTCATC+TGG 0.476910 2:-71045820 None:intergenic
CATCATTGCAGCAGAAGAAA+GGG 0.478689 2:-71045013 None:intergenic
TAGAAATAGCTGGGTTTGGA+AGG 0.479374 2:-71045182 None:intergenic
AAATTTGGTGGAAAACCTCC+TGG 0.485123 2:+71042391 MsG0280010532.01.T01:CDS
CTGAAGAAATTTATAAAGGA+TGG 0.488509 2:-71043961 None:intergenic
ACTGGAAGCAGTACCAACTA+TGG 0.489454 2:+71043870 MsG0280010532.01.T01:CDS
AAAACTGAACTATGACATAC+AGG 0.503454 2:-71045733 None:intergenic
CAGAGTCGTAAGGATGTTGA+AGG 0.503957 2:+71040926 MsG0280010532.01.T01:intron
ATCAGGAACATCAGCTACAT+TGG 0.504995 2:-71043935 None:intergenic
TAACATCGATCTCAGCCAAT+GGG 0.512566 2:+71040822 MsG0280010532.01.T01:CDS
CTCATGCTGCTACACCAGTT+GGG 0.515697 2:+71044863 MsG0280010532.01.T01:CDS
GCTTCACAAGATTTGTGGCT+CGG 0.516612 2:-71044972 None:intergenic
ATTAGGGTTAGGGTTAGGGT+TGG 0.517502 2:-71040622 None:intergenic
GTGTTTAATTATCAACTCAC+TGG 0.517779 2:+71045567 MsG0280010532.01.T01:three_prime_UTR
CAACGAAAGGGTCAATTCGT+TGG 0.524030 2:-71040756 None:intergenic
GGACTCAGGAGCATCATGCT+GGG 0.525944 2:-71044938 None:intergenic
AAGAAGAAGATGATGAAAGA+CGG 0.528548 2:-71040594 None:intergenic
GGTGGAAATGGCTGTAGCAT+TGG 0.536920 2:-71045120 None:intergenic
GAAATAGCTGGGTTTGGAAG+GGG 0.537359 2:-71045180 None:intergenic
AGAGATGGTATCTGCAAGGT+TGG 0.539591 2:-71044892 None:intergenic
ACTCATGCTGCTACACCAGT+TGG 0.541421 2:+71044862 MsG0280010532.01.T01:CDS
CCATCCATGACTGCCATAGT+TGG 0.543119 2:-71043883 None:intergenic
TGAGAATTTCCTCAACGAAA+GGG 0.543518 2:-71040768 None:intergenic
TGTAGCATTGGAGTACCATA+AGG 0.543996 2:-71045108 None:intergenic
ATTGTAGCAGAAGACTGATA+AGG 0.546760 2:-71044823 None:intergenic
GCATCATGCTGGGGTGTTAG+CGG 0.547338 2:-71044928 None:intergenic
CTTTAACTTCGGAGGCACCT+TGG 0.547820 2:-71043051 None:intergenic
AGAAGACTGATAAGGTTGTC+CGG 0.549406 2:-71044815 None:intergenic
TTTAGGACATGATTAAAGCC+TGG 0.550610 2:-71045635 None:intergenic
AACCCTAGAATTGAAAATTG+GGG 0.551212 2:-71040645 None:intergenic
GATGAGACCTTTAACTTCGG+AGG 0.553698 2:-71043059 None:intergenic
GAGTGGTTATAGGGGTGCTA+AGG 0.554678 2:+71045826 MsG0280010532.01.T01:three_prime_UTR
GGTATCTGCAAGGTTGGCAG+TGG 0.554970 2:-71044886 None:intergenic
ATGAGAATTTCCTCAACGAA+AGG 0.557425 2:-71040769 None:intergenic
TGCAATGGAAAATGAAATGC+AGG 0.558328 2:-71040563 None:intergenic
AATGCTGCTCAAGAAGTGAA+TGG 0.565199 2:+71042458 MsG0280010532.01.T01:CDS
AGAAATAGCTGGGTTTGGAA+GGG 0.568715 2:-71045181 None:intergenic
GGCATAAGCAGAAAATTTGG+TGG 0.569335 2:+71042379 MsG0280010532.01.T01:intron
CTATATATACTGACATAACA+TGG 0.570626 2:+71045780 MsG0280010532.01.T01:three_prime_UTR
ATATACTGACATAACATGGC+AGG 0.574574 2:+71045784 MsG0280010532.01.T01:three_prime_UTR
ACTTCAAATGCTCATATCAC+CGG 0.575143 2:+71044796 MsG0280010532.01.T01:CDS
GTTGATGATGATGGCTCAAG+AGG 0.578483 2:-71043907 None:intergenic
GTAGGTATGGATGAAGACAC+GGG 0.580863 2:-71045042 None:intergenic
ACGAATTGACCCTTTCGTTG+AGG 0.585086 2:+71040759 MsG0280010532.01.T01:CDS
ACAGTACCAGTAGGATGAAG+TGG 0.589976 2:-71045072 None:intergenic
GGTGTTAGCGGAGTAGATGT+TGG 0.590716 2:-71044916 None:intergenic
AGTACCAACTATGGCAGTCA+TGG 0.591187 2:+71043879 MsG0280010532.01.T01:CDS
ACGGGAGCAAGTGAAGGTGG+TGG 0.592881 2:-71045150 None:intergenic
TTAACATCGATCTCAGCCAA+TGG 0.599690 2:+71040821 MsG0280010532.01.T01:CDS
AACATGGCAGGAAATGATGA+AGG 0.602059 2:+71045796 MsG0280010532.01.T01:three_prime_UTR
AATTTGGTGGAAAACCTCCT+GGG 0.602967 2:+71042392 MsG0280010532.01.T01:CDS
GACTCAGGAGCATCATGCTG+GGG 0.604546 2:-71044937 None:intergenic
GAAACGGGAGCAAGTGAAGG+TGG 0.605311 2:-71045153 None:intergenic
CCAACTATGGCAGTCATGGA+TGG 0.605321 2:+71043883 MsG0280010532.01.T01:CDS
GTCCAGATGAGTGGTTATAG+GGG 0.606920 2:+71045818 MsG0280010532.01.T01:three_prime_UTR
ACCAGTAGGATGAAGTGGAG+GGG 0.607968 2:-71045067 None:intergenic
TAATGCTCGCGAATGTGAAG+AGG 0.613598 2:+71042493 MsG0280010532.01.T01:CDS
CGAGCACCAGAAGAGCATCT+CGG 0.613645 2:-71045215 None:intergenic
TACCAGTAGGATGAAGTGGA+GGG 0.613698 2:-71045068 None:intergenic
TAAAGGTCTCATCTACAAAG+AGG 0.614588 2:+71043069 MsG0280010532.01.T01:CDS
TTGGAAGTAGTTGATGATGA+TGG 0.619350 2:-71043916 None:intergenic
ACTGGTGTAGCAGCATGAGT+TGG 0.624090 2:-71044859 None:intergenic
ATGATGAAGGTCCAGATGAG+TGG 0.632945 2:+71045809 MsG0280010532.01.T01:three_prime_UTR
GAAGAAACGGGAGCAAGTGA+AGG 0.633795 2:-71045156 None:intergenic
AGTAGGTATGGATGAAGACA+CGG 0.634463 2:-71045043 None:intergenic
ATTTGGTGGAAAACCTCCTG+GGG 0.636956 2:+71042393 MsG0280010532.01.T01:CDS
AAGACGGAAAGAGAGTGCAA+TGG 0.637967 2:-71040578 None:intergenic
GTACCAGTAGGATGAAGTGG+AGG 0.640592 2:-71045069 None:intergenic
GATTCTTAATGCATATGCCA+AGG 0.648448 2:+71043034 MsG0280010532.01.T01:CDS
AACGCAACAATGTCTCAGAA+CGG 0.658570 2:+71040676 MsG0280010532.01.T01:exon
ATCATTGCAGCAGAAGAAAG+GGG 0.660388 2:-71045012 None:intergenic
TGTACTTGTACAGTACCAGT+AGG 0.670268 2:-71045081 None:intergenic
CATCAATCATGACTTTCGAG+AGG 0.693121 2:+71045545 MsG0280010532.01.T01:exon
ATTGCAGCAGAAGAAAGGGG+AGG 0.717430 2:-71045009 None:intergenic
TTTGGTGGAAAACCTCCTGG+GGG 0.721595 2:+71042394 MsG0280010532.01.T01:CDS
TGGAAGAGATGGTATCTGCA+AGG 0.725008 2:-71044896 None:intergenic
TAGGTATGGATGAAGACACG+GGG 0.739412 2:-71045041 None:intergenic
AGGTATGGATGAAGACACGG+GGG 0.768571 2:-71045040 None:intergenic
GAGTCTGATAGACTCAAACA+CGG 0.769158 2:+71040536 MsG0280010532.01.T01:five_prime_UTR
GGTATGGATGAAGACACGGG+GGG 0.779869 2:-71045039 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTCAATAATTAAATATAAAA+AGG - Chr2:71042086-71042105 None:intergenic 10.0%
!!! AAATAATATATTTTACAGTT+AGG + Chr2:71041644-71041663 MsG0280010532.01.T01:intron 10.0%
!!! AAATTTTGGTTTTTTTTAAT+GGG + Chr2:71040975-71040994 MsG0280010532.01.T01:CDS 10.0%
!!! AGTTTTTCAATTTTAAAAAT+AGG - Chr2:71041960-71041979 None:intergenic 10.0%
!!! ATCACAATAATATTTTTTTT+TGG + Chr2:71045281-71045300 MsG0280010532.01.T01:intron 10.0%
!!! ATTTTTTTTTCCTTTTAATA+TGG + Chr2:71044269-71044288 MsG0280010532.01.T01:intron 10.0%
!!! TCTTTTATACTTAAATTTAT+AGG + Chr2:71041673-71041692 MsG0280010532.01.T01:intron 10.0%
!!! TTAAATTTTCTTATTTGATT+TGG + Chr2:71041189-71041208 MsG0280010532.01.T01:intron 10.0%
!!! TTTTTTTTTCCTTTTAATAT+GGG + Chr2:71044270-71044289 MsG0280010532.01.T01:intron 10.0%
!! AGAAAATACAAAAAAAAAAG+GGG - Chr2:71040862-71040881 None:intergenic 15.0%
!! AGAGAAAATACAAAAAAAAA+AGG - Chr2:71040864-71040883 None:intergenic 15.0%
!! AGCTAAGAAATATAATAATA+TGG - Chr2:71043155-71043174 None:intergenic 15.0%
!! GAAGAATTAAAAATTGTATT+TGG - Chr2:71044464-71044483 None:intergenic 15.0%
!! GAGAAAATACAAAAAAAAAA+GGG - Chr2:71040863-71040882 None:intergenic 15.0%
!!! AAAGTACAATTATTTCTTTT+AGG + Chr2:71042852-71042871 MsG0280010532.01.T01:intron 15.0%
!!! AAATTTATAGGATTTGTTTT+AGG + Chr2:71041685-71041704 MsG0280010532.01.T01:intron 15.0%
!!! AAGTACAATTATTTCTTTTA+GGG + Chr2:71042853-71042872 MsG0280010532.01.T01:intron 15.0%
!!! AATTTTGGTTTTTTTTAATG+GGG + Chr2:71040976-71040995 MsG0280010532.01.T01:CDS 15.0%
!!! ATGAAAAAAAAGCTAATTTT+AGG + Chr2:71041887-71041906 MsG0280010532.01.T01:intron 15.0%
!!! ATTTTGAATTGAAATTTCAT+TGG + Chr2:71044548-71044567 MsG0280010532.01.T01:intron 15.0%
!!! GAAAATATTTTACATGAATA+TGG - Chr2:71044158-71044177 None:intergenic 15.0%
!!! GAAATTTTGGTTTTTTTTAA+TGG + Chr2:71040974-71040993 MsG0280010532.01.T01:CDS 15.0%
!!! GTGTATTTTATTAAATTGTA+TGG + Chr2:71045871-71045890 MsG0280010532.01.T01:three_prime_UTR 15.0%
!!! TATTTGTTAGAATTTTAGAA+AGG + Chr2:71042823-71042842 MsG0280010532.01.T01:intron 15.0%
!!! TCAATATTGATATTTTATTG+TGG + Chr2:71042639-71042658 MsG0280010532.01.T01:intron 15.0%
!!! TGAAAAAAAAGCTAATTTTA+GGG + Chr2:71041888-71041907 MsG0280010532.01.T01:intron 15.0%
!!! TTGAAATTTTTTAGAATCAA+CGG - Chr2:71041163-71041182 None:intergenic 15.0%
!!! TTTCTAATTTCTCTATTTTT+TGG + Chr2:71045467-71045486 MsG0280010532.01.T01:intron 15.0%
!!! TTTTAATTGAGGTTAATTTT+GGG + Chr2:71041043-71041062 MsG0280010532.01.T01:intron 15.0%
!!! TTTTTAATTGAGGTTAATTT+TGG + Chr2:71041042-71041061 MsG0280010532.01.T01:intron 15.0%
!!! TTTTTTTTCCTTTTAATATG+GGG + Chr2:71044271-71044290 MsG0280010532.01.T01:intron 15.0%
!! AAATTGAAAAACTGAATAGT+TGG + Chr2:71041967-71041986 MsG0280010532.01.T01:intron 20.0%
!! AATAATATTAAACGACTGTT+TGG + Chr2:71045362-71045381 MsG0280010532.01.T01:intron 20.0%
!! ACAAAGATTAAATACATACA+TGG - Chr2:71042352-71042371 None:intergenic 20.0%
!! ATAATATTAAACGACTGTTT+GGG + Chr2:71045363-71045382 MsG0280010532.01.T01:intron 20.0%
!! ATAGAAAATGAAAGGAAAAA+AGG - Chr2:71044041-71044060 None:intergenic 20.0%
!! ATGTCGCATAAAAATTTAAA+AGG - Chr2:71042062-71042081 None:intergenic 20.0%
!! CATAAAAATTTAAAAGGGAA+TGG - Chr2:71042056-71042075 None:intergenic 20.0%
!! GTCATAACAATTTGTAAAAT+TGG + Chr2:71045673-71045692 MsG0280010532.01.T01:three_prime_UTR 20.0%
!! TACACTGAAGAAATTTATAA+AGG - Chr2:71043968-71043987 None:intergenic 20.0%
!! TATATACATTCACTTATGTT+TGG + Chr2:71043000-71043019 MsG0280010532.01.T01:intron 20.0%
!! TATTTAATCTTTGTCATTGT+TGG + Chr2:71042358-71042377 MsG0280010532.01.T01:intron 20.0%
!! TCTTTGATATTCAGAAATAT+TGG + Chr2:71043581-71043600 MsG0280010532.01.T01:intron 20.0%
!! TGGTTAAAAATTAAAAAACG+AGG - Chr2:71044138-71044157 None:intergenic 20.0%
!! TGTCGCATAAAAATTTAAAA+GGG - Chr2:71042061-71042080 None:intergenic 20.0%
!! TTATTAGTAAACTAGATTAC+AGG + Chr2:71041257-71041276 MsG0280010532.01.T01:intron 20.0%
!! TTATTGATGTTAGAGAATAA+AGG + Chr2:71044204-71044223 MsG0280010532.01.T01:intron 20.0%
!! TTGATTTAAGTGGTTTAATT+GGG + Chr2:71041013-71041032 MsG0280010532.01.T01:intron 20.0%
!!! ATATTTCTGAATATCAAAGA+TGG - Chr2:71043581-71043600 None:intergenic 20.0%
!!! ATATTTTATGATCCTTATCA+AGG + Chr2:71045395-71045414 MsG0280010532.01.T01:intron 20.0%
!!! ATTGATTTAAGTGGTTTAAT+TGG + Chr2:71041012-71041031 MsG0280010532.01.T01:intron 20.0%
!!! GTATTGTAGATATTGTTTTA+AGG + Chr2:71042272-71042291 MsG0280010532.01.T01:intron 20.0%
!!! GTTGTTGTATAATGTTATTT+TGG + Chr2:71043442-71043461 MsG0280010532.01.T01:intron 20.0%
!!! TAGAAAAAGTGTGTAAAAAA+TGG - Chr2:71044578-71044597 None:intergenic 20.0%
!!! TATCACATTTTCTGTTAATA+TGG + Chr2:71041493-71041512 MsG0280010532.01.T01:intron 20.0%
!!! TATTTCTGAATATCAAAGAT+GGG - Chr2:71043580-71043599 None:intergenic 20.0%
!!! TCCTAAACTTTTAAATGTTT+CGG + Chr2:71045651-71045670 MsG0280010532.01.T01:three_prime_UTR 20.0%
!!! TCTGATTATTTATTTTTTGC+AGG - Chr2:71042684-71042703 None:intergenic 20.0%
!!! TGAAAATATACTTTTGTGAT+TGG + Chr2:71042296-71042315 MsG0280010532.01.T01:intron 20.0%
!!! TGTATAATGTTATTTTGGTT+TGG + Chr2:71043447-71043466 MsG0280010532.01.T01:intron 20.0%
!!! TGTATAATTGTGGTTTTTAT+AGG - Chr2:71041807-71041826 None:intergenic 20.0%
!!! TTACATTTTCTAGAAGTTTT+AGG + Chr2:71045612-71045631 MsG0280010532.01.T01:three_prime_UTR 20.0%
!!! TTTCAAATAATTTGTTACGA+CGG + Chr2:71044015-71044034 MsG0280010532.01.T01:intron 20.0%
!!! TTTCATTTTTCAACAAAACA+TGG + Chr2:71045903-71045922 MsG0280010532.01.T01:three_prime_UTR 20.0%
!!! TTTTTTCTAAAGACAAAATG+AGG - Chr2:71043694-71043713 None:intergenic 20.0%
! AAGACAGTATAGAAAATGAA+AGG - Chr2:71044049-71044068 None:intergenic 25.0%
! AATATGTAATATTCAGCACA+TGG + Chr2:71044687-71044706 MsG0280010532.01.T01:intron 25.0%
! AATGTCAGAAATACTAAAGT+TGG - Chr2:71044501-71044520 None:intergenic 25.0%
! ACCGAAACATTTAAAAGTTT+AGG - Chr2:71045655-71045674 None:intergenic 25.0%
! AGTATATTGTGAAACAATAG+TGG + Chr2:71041352-71041371 MsG0280010532.01.T01:intron 25.0%
! ATCACAATAAACTGAAATCT+TGG - Chr2:71041103-71041122 None:intergenic 25.0%
! ATGTAGTACAAATCATATAG+CGG - Chr2:71041332-71041351 None:intergenic 25.0%
! CAAATGAAAATGATCATAAG+TGG - Chr2:71044661-71044680 None:intergenic 25.0%
! CTAGTTTACTAATAATCCAA+TGG - Chr2:71041252-71041271 None:intergenic 25.0%
! CTATATATACTGACATAACA+TGG + Chr2:71045780-71045799 MsG0280010532.01.T01:three_prime_UTR 25.0%
! CTGAAGAAATTTATAAAGGA+TGG - Chr2:71043964-71043983 None:intergenic 25.0%
! GCATTTCTATACAATAGATA+TGG - Chr2:71042443-71042462 None:intergenic 25.0%
! TAAATACATACATGGACATA+GGG - Chr2:71042344-71042363 None:intergenic 25.0%
! TAATATTATTGTGATCAGAC+AGG - Chr2:71045352-71045371 None:intergenic 25.0%
! TAGAGAAATTAGAAATTGAG+AGG - Chr2:71045462-71045481 None:intergenic 25.0%
! TATCAATATTGATGAATGCA+AGG - Chr2:71042631-71042650 None:intergenic 25.0%
! TATTTAATTAGTGGTGACTT+TGG + Chr2:71042901-71042920 MsG0280010532.01.T01:intron 25.0%
! TCATGTTATTCTACTTCTAT+GGG + Chr2:71043311-71043330 MsG0280010532.01.T01:intron 25.0%
! TGTAATCCACACAAAAAAAT+AGG - Chr2:71045962-71045981 None:intergenic 25.0%
! TGTTTCACTTATTTGAGAAT+AGG + Chr2:71042600-71042619 MsG0280010532.01.T01:intron 25.0%
! TTAAATACATACATGGACAT+AGG - Chr2:71042345-71042364 None:intergenic 25.0%
! TTAATATATGCTCCTTGATA+AGG - Chr2:71045410-71045429 None:intergenic 25.0%
! TTGAATTAACAAAGACATAC+TGG + Chr2:71044234-71044253 MsG0280010532.01.T01:intron 25.0%
!! AAATATACTTTTGTGATTGG+TGG + Chr2:71042299-71042318 MsG0280010532.01.T01:intron 25.0%
!! GTCAGTATATATAGTTGATA+TGG - Chr2:71045774-71045793 None:intergenic 25.0%
!! TATTTGGAATTAATCCTAGT+CGG - Chr2:71044448-71044467 None:intergenic 25.0%
!! TGATGTTGAAATCTTTTGAT+GGG - Chr2:71043726-71043745 None:intergenic 25.0%
!! TTGATGTTGAAATCTTTTGA+TGG - Chr2:71043727-71043746 None:intergenic 25.0%
!! TTTTCTATACTGTCTTGAAA+TGG + Chr2:71044053-71044072 MsG0280010532.01.T01:intron 25.0%
!!! ATGTTATTTTGGTTTGGAAA+TGG + Chr2:71043453-71043472 MsG0280010532.01.T01:intron 25.0%
!!! TATAGGATTTGTTTTAGGTT+TGG + Chr2:71041690-71041709 MsG0280010532.01.T01:intron 25.0%
!!! TATATCATAGTGGATTTTGA+TGG + Chr2:71041777-71041796 MsG0280010532.01.T01:intron 25.0%
!!! TATTTTTTGCAGGTTTTACA+AGG - Chr2:71042674-71042693 None:intergenic 25.0%
!!! TGGGAATTTGTTTTTAATTG+AGG + Chr2:71041032-71041051 MsG0280010532.01.T01:intron 25.0%
!!! TGGGTTTTAATTGATTTAAG+TGG + Chr2:71041003-71041022 MsG0280010532.01.T01:intron 25.0%
!!! TGTTAAGAGGTTTGAAATTT+TGG + Chr2:71040961-71040980 MsG0280010532.01.T01:CDS 25.0%
!!! TGTTATTTTGGTTTGGAAAT+GGG + Chr2:71043454-71043473 MsG0280010532.01.T01:intron 25.0%
!!! TTTTAAAAATAGGTCATGTC+TGG - Chr2:71041950-71041969 None:intergenic 25.0%
!!! TTTTTTTTAATGGGGTTGAT+GGG + Chr2:71040984-71041003 MsG0280010532.01.T01:CDS 25.0%
AAAACTGAACTATGACATAC+AGG - Chr2:71045736-71045755 None:intergenic 30.0%
AAAATGAGGATAGTACAATG+AGG - Chr2:71043680-71043699 None:intergenic 30.0%
AAATGAGGATAGTACAATGA+GGG - Chr2:71043679-71043698 None:intergenic 30.0%
AACCCTAGAATTGAAAATTG+GGG - Chr2:71040648-71040667 None:intergenic 30.0%
AAGAAGAAGATGATGAAAGA+CGG - Chr2:71040597-71040616 None:intergenic 30.0%
AAGCATACCTACATATTGAA+AGG - Chr2:71042028-71042047 None:intergenic 30.0%
AGAAATCTAAGAATGCAACA+TGG - Chr2:71043609-71043628 None:intergenic 30.0%
AGAATTGAAAATTGGGGATT+AGG - Chr2:71040642-71040661 None:intergenic 30.0%
AGTGAAACAAAATTCTAGTC+TGG - Chr2:71042589-71042608 None:intergenic 30.0%
AGTTAACTTATTAGTCCATG+AGG - Chr2:71044412-71044431 None:intergenic 30.0%
ATGTGATAGTAAAGTAGAAC+GGG - Chr2:71043182-71043201 None:intergenic 30.0%
ATTATATATCGACATGCAAG+TGG - Chr2:71043396-71043415 None:intergenic 30.0%
CTAGTAAGTTATCTGAGAAA+CGG + Chr2:71042756-71042775 MsG0280010532.01.T01:intron 30.0%
CTCATGTTATTCTACTTCTA+TGG + Chr2:71043310-71043329 MsG0280010532.01.T01:intron 30.0%
CTGTTATCAATAGTGAATTG+CGG - Chr2:71042207-71042226 None:intergenic 30.0%
GAACCCTAGAATTGAAAATT+GGG - Chr2:71040649-71040668 None:intergenic 30.0%
GAATTGAAAATTGGGGATTA+GGG - Chr2:71040641-71040660 None:intergenic 30.0%
GAGATTATCCAAAGCTTAAA+CGG - Chr2:71043646-71043665 None:intergenic 30.0%
GATGTGATAGTAAAGTAGAA+CGG - Chr2:71043183-71043202 None:intergenic 30.0%
GGACAATCAATTCATTGATA+TGG + Chr2:71045499-71045518 MsG0280010532.01.T01:intron 30.0%
GGACTAATAAGTTAACTGAT+TGG + Chr2:71044415-71044434 MsG0280010532.01.T01:intron 30.0%
GGGGAAATCATTAATTAAAG+TGG + Chr2:71044297-71044316 MsG0280010532.01.T01:intron 30.0%
GTACTTTAGACACATTCAAT+GGG + Chr2:71042707-71042726 MsG0280010532.01.T01:intron 30.0%
GTGAAACAAAATTCTAGTCT+GGG - Chr2:71042588-71042607 None:intergenic 30.0%
GTGTTTAATTATCAACTCAC+TGG + Chr2:71045567-71045586 MsG0280010532.01.T01:three_prime_UTR 30.0%
TAAATTTCAGTTTGTCACCT+TGG + Chr2:71041524-71041543 MsG0280010532.01.T01:intron 30.0%
TACTTTAGACACATTCAATG+GGG + Chr2:71042708-71042727 MsG0280010532.01.T01:intron 30.0%
TACTTTATCCGTTTAAGCTT+TGG + Chr2:71043635-71043654 MsG0280010532.01.T01:intron 30.0%
TGAACCCTAGAATTGAAAAT+TGG - Chr2:71040650-71040669 None:intergenic 30.0%
TGTACTTTAGACACATTCAA+TGG + Chr2:71042706-71042725 MsG0280010532.01.T01:intron 30.0%
TTTATAAAGGATGGATCATC+AGG - Chr2:71043955-71043974 None:intergenic 30.0%
! AATCCCCAATTTTCAATTCT+AGG + Chr2:71040642-71040661 MsG0280010532.01.T01:five_prime_UTR 30.0%
! AGTGTTGTTAAATAGCAGTT+AGG - Chr2:71041415-71041434 None:intergenic 30.0%
! ATCCCCAATTTTCAATTCTA+GGG + Chr2:71040643-71040662 MsG0280010532.01.T01:five_prime_UTR 30.0%
! ATTTGGAATTAATCCTAGTC+GGG - Chr2:71044447-71044466 None:intergenic 30.0%
! ATTTTACAATTCTCCTCAAG+GGG + Chr2:71044331-71044350 MsG0280010532.01.T01:intron 30.0%
! CACATTTTCTGTTAATATGG+TGG + Chr2:71041496-71041515 MsG0280010532.01.T01:intron 30.0%
! CATTTTACAATTCTCCTCAA+GGG + Chr2:71044330-71044349 MsG0280010532.01.T01:intron 30.0%
! CTTATGTTTGGCTAATTTTC+AGG + Chr2:71043012-71043031 MsG0280010532.01.T01:intron 30.0%
! TATTGGCTACTGTATAATTG+TGG - Chr2:71041817-71041836 None:intergenic 30.0%
! TGCTATTTAACAACACTGAT+AGG + Chr2:71041418-71041437 MsG0280010532.01.T01:intron 30.0%
! TTTCCTTTTAATATGGGGAA+GGG + Chr2:71044276-71044295 MsG0280010532.01.T01:intron 30.0%
! TTTTCCTTTTAATATGGGGA+AGG + Chr2:71044275-71044294 MsG0280010532.01.T01:intron 30.0%
!! CAAAAGAAAAGTGTTCACAA+TGG - Chr2:71043995-71044014 None:intergenic 30.0%
!! TTTGAAGTGTTGTCAAATAG+TGG + Chr2:71041751-71041770 MsG0280010532.01.T01:intron 30.0%
!! TTTTCTATGCTAGACTTGTT+TGG + Chr2:71044591-71044610 MsG0280010532.01.T01:intron 30.0%
!!! ATTTCACATAGTGGGTTTTT+CGG + Chr2:71042167-71042186 MsG0280010532.01.T01:intron 30.0%
!!! CACTGGAAGAATTGTTTTTT+GGG + Chr2:71045584-71045603 MsG0280010532.01.T01:three_prime_UTR 30.0%
!!! GGTTTTTTCTGAATTACTCT+AGG + Chr2:71041373-71041392 MsG0280010532.01.T01:intron 30.0%
!!! GTTTTTTTTAATGGGGTTGA+TGG + Chr2:71040983-71041002 MsG0280010532.01.T01:CDS 30.0%
!!! TATAGTTTTGAGTTACAGTC+TGG + Chr2:71041570-71041589 MsG0280010532.01.T01:intron 30.0%
!!! TCACTGGAAGAATTGTTTTT+TGG + Chr2:71045583-71045602 MsG0280010532.01.T01:three_prime_UTR 30.0%
!!! TTTCTCTATTTTTTGGCTCT+TGG + Chr2:71045474-71045493 MsG0280010532.01.T01:intron 30.0%
!!! TTTGTTTTAGGTTTGGTTAC+CGG + Chr2:71041697-71041716 MsG0280010532.01.T01:intron 30.0%
AAAATTGGGGATTAGGGTTA+GGG - Chr2:71040635-71040654 None:intergenic 35.0%
AAATTCTAGTCTGGGTGTAT+AGG - Chr2:71042580-71042599 None:intergenic 35.0%
AATATTAGCAGCGGATAGAT+AGG + Chr2:71042781-71042800 MsG0280010532.01.T01:intron 35.0%
AATGAGGATAGTACAATGAG+GGG - Chr2:71043678-71043697 None:intergenic 35.0%
AATTCTAGTCTGGGTGTATA+GGG - Chr2:71042579-71042598 None:intergenic 35.0%
ACTGCAATAAATGCAAGTGA+GGG - Chr2:71043839-71043858 None:intergenic 35.0%
ACTTCAAATGCTCATATCAC+CGG + Chr2:71044796-71044815 MsG0280010532.01.T01:CDS 35.0%
ATACCTACATATTGAAAGGC+TGG - Chr2:71042024-71042043 None:intergenic 35.0%
ATATACTGACATAACATGGC+AGG + Chr2:71045784-71045803 MsG0280010532.01.T01:three_prime_UTR 35.0%
ATCATTAAACTCTCACCTCA+CGG + Chr2:71042949-71042968 MsG0280010532.01.T01:intron 35.0%
ATGAGAATTTCCTCAACGAA+AGG - Chr2:71040772-71040791 None:intergenic 35.0%
ATGCATTTGACAAATGCATG+GGG + Chr2:71043215-71043234 MsG0280010532.01.T01:intron 35.0%
ATTATACAACAACATGCCCA+AGG - Chr2:71043435-71043454 None:intergenic 35.0%
ATTGTAGCAGAAGACTGATA+AGG - Chr2:71044826-71044845 None:intergenic 35.0%
CATGCATTTGACAAATGCAT+GGG + Chr2:71043214-71043233 MsG0280010532.01.T01:intron 35.0%
CATTTATTGCAGTGAGTTTG+AGG + Chr2:71043846-71043865 MsG0280010532.01.T01:intron 35.0%
CCTTGAGGAGAATTGTAAAA+TGG - Chr2:71044332-71044351 None:intergenic 35.0%
CGTTTCTCAGATAACTTACT+AGG - Chr2:71042758-71042777 None:intergenic 35.0%
CTCAAGAAGTGAATGGTATT+TGG + Chr2:71042465-71042484 MsG0280010532.01.T01:CDS 35.0%
CTGCTACAATTTCTTCTTCT+GGG + Chr2:71044836-71044855 MsG0280010532.01.T01:CDS 35.0%
CTTATCTTACTTGTGTCCTT+TGG + Chr2:71044092-71044111 MsG0280010532.01.T01:intron 35.0%
GAAAAACCCACTATGTGAAA+TGG - Chr2:71042168-71042187 None:intergenic 35.0%
GATTCTTAATGCATATGCCA+AGG + Chr2:71043034-71043053 MsG0280010532.01.T01:CDS 35.0%
GGAAACTAGCAAGATCAAAA+TGG - Chr2:71045715-71045734 None:intergenic 35.0%
GTTGGCATAAGCAGAAAATT+TGG + Chr2:71042376-71042395 MsG0280010532.01.T01:intron 35.0%
TAAAGGTCTCATCTACAAAG+AGG + Chr2:71043069-71043088 MsG0280010532.01.T01:CDS 35.0%
TCCCTTGTGTCAATTTAAGT+GGG - Chr2:71045321-71045340 None:intergenic 35.0%
TCTGCTACAATTTCTTCTTC+TGG + Chr2:71044835-71044854 MsG0280010532.01.T01:CDS 35.0%
TGAATTACTCTAGGCTATAG+TGG + Chr2:71041382-71041401 MsG0280010532.01.T01:intron 35.0%
TGACTTATTTCAACTGCGTT+CGG + Chr2:71042102-71042121 MsG0280010532.01.T01:intron 35.0%
TGAGAATTTCCTCAACGAAA+GGG - Chr2:71040771-71040790 None:intergenic 35.0%
TGCAATGGAAAATGAAATGC+AGG - Chr2:71040566-71040585 None:intergenic 35.0%
! CCATTTTACAATTCTCCTCA+AGG + Chr2:71044329-71044348 MsG0280010532.01.T01:intron 35.0%
! GTAGATGAGACCTTTAACTT+CGG - Chr2:71043065-71043084 None:intergenic 35.0%
! GTCATAGTTCAGTTTTCTAC+AGG + Chr2:71045740-71045759 MsG0280010532.01.T01:three_prime_UTR 35.0%
! TTCCTTTTAATATGGGGAAG+GGG + Chr2:71044277-71044296 MsG0280010532.01.T01:intron 35.0%
! TTTAGGACATGATTAAAGCC+TGG - Chr2:71045638-71045657 None:intergenic 35.0%
! TTTGTAACTCAGTTCTGATC+AGG + Chr2:71044739-71044758 MsG0280010532.01.T01:intron 35.0%
!! ACCTTTTCTCTAGAAATAGC+TGG - Chr2:71045195-71045214 None:intergenic 35.0%
!! AGGTTGCAAATCTTTTTAGC+AGG + Chr2:71042513-71042532 MsG0280010532.01.T01:CDS 35.0%
!! CAGGTATTGTTTTCACGTTT+TGG + Chr2:71042532-71042551 MsG0280010532.01.T01:intron 35.0%
!! CCTTTTCTCTAGAAATAGCT+GGG - Chr2:71045194-71045213 None:intergenic 35.0%
!! GATCTCTCTTTGTTGTTAAG+AGG + Chr2:71040948-71040967 MsG0280010532.01.T01:CDS 35.0%
!! TTGGAAGTAGTTGATGATGA+TGG - Chr2:71043919-71043938 None:intergenic 35.0%
!!! AGTCAGCCTATTTTTTTGTG+TGG + Chr2:71045953-71045972 MsG0280010532.01.T01:three_prime_UTR 35.0%
!!! TCTATTTTTTGGCTCTTGGT+AGG + Chr2:71045478-71045497 MsG0280010532.01.T01:intron 35.0%
!!! TTTTCTAGAAGTTTTAGGCC+AGG + Chr2:71045617-71045636 MsG0280010532.01.T01:three_prime_UTR 35.0%
AAATCATATAGCGGCCATAG+TGG - Chr2:71041323-71041342 None:intergenic 40.0%
AACATGGCAGGAAATGATGA+AGG + Chr2:71045796-71045815 MsG0280010532.01.T01:three_prime_UTR 40.0%
AACGCAACAATGTCTCAGAA+CGG + Chr2:71040676-71040695 MsG0280010532.01.T01:exon 40.0%
AAGATCCTCTGATGAGCATA+TGG + Chr2:71044631-71044650 MsG0280010532.01.T01:intron 40.0%
AATGCTGCTCAAGAAGTGAA+TGG + Chr2:71042458-71042477 MsG0280010532.01.T01:CDS 40.0%
ACTATTCGTTAGCAGATGTG+CGG + Chr2:71041858-71041877 MsG0280010532.01.T01:intron 40.0%
ACTCTAGGCTATAGTGGTAT+TGG + Chr2:71041388-71041407 MsG0280010532.01.T01:intron 40.0%
AGAAATAGCTGGGTTTGGAA+GGG - Chr2:71045184-71045203 None:intergenic 40.0%
AGAAGACTGATAAGGTTGTC+CGG - Chr2:71044818-71044837 None:intergenic 40.0%
AGAAGGCTTCACAAGATTTG+TGG - Chr2:71044980-71044999 None:intergenic 40.0%
AGCCCACTTAAATTGACACA+AGG + Chr2:71045316-71045335 MsG0280010532.01.T01:intron 40.0%
AGGGGAGGAACAAAAAAAGA+AGG - Chr2:71044997-71045016 None:intergenic 40.0%
AGTAGGTATGGATGAAGACA+CGG - Chr2:71045046-71045065 None:intergenic 40.0%
AGTGGAATAGCAGCTGATAT+TGG - Chr2:71041841-71041860 None:intergenic 40.0%
ATAGTGGCGCTATATCATAG+TGG + Chr2:71041767-71041786 MsG0280010532.01.T01:intron 40.0%
ATCAGGAACATCAGCTACAT+TGG - Chr2:71043938-71043957 None:intergenic 40.0%
ATCATTGCAGCAGAAGAAAG+GGG - Chr2:71045015-71045034 None:intergenic 40.0%
ATCCAATGGACACACATGTT+TGG - Chr2:71041238-71041257 None:intergenic 40.0%
ATGAGGATAGTACAATGAGG+GGG - Chr2:71043677-71043696 None:intergenic 40.0%
ATTTGAACTCCATCCTATGC+GGG + Chr2:71044354-71044373 MsG0280010532.01.T01:intron 40.0%
CACTGCAATAAATGCAAGTG+AGG - Chr2:71043840-71043859 None:intergenic 40.0%
CATCAATCATGACTTTCGAG+AGG + Chr2:71045545-71045564 MsG0280010532.01.T01:exon 40.0%
CATCATTGCAGCAGAAGAAA+GGG - Chr2:71045016-71045035 None:intergenic 40.0%
CCATGCATTTGACAAATGCA+TGG + Chr2:71043213-71043232 MsG0280010532.01.T01:intron 40.0%
CCATGCATTTGTCAAATGCA+TGG - Chr2:71043216-71043235 None:intergenic 40.0%
CGAAACACGAGCAAATATAG+AGG - Chr2:71041624-71041643 None:intergenic 40.0%
CTCCCTTGTGTCAATTTAAG+TGG - Chr2:71045322-71045341 None:intergenic 40.0%
CTCTAGGCTATAGTGGTATT+GGG + Chr2:71041389-71041408 MsG0280010532.01.T01:intron 40.0%
CTGCTACCATTTCACATAGT+GGG + Chr2:71042159-71042178 MsG0280010532.01.T01:intron 40.0%
GAAAATTGGGGATTAGGGTT+AGG - Chr2:71040636-71040655 None:intergenic 40.0%
GAGTCTGATAGACTCAAACA+CGG + Chr2:71040536-71040555 MsG0280010532.01.T01:five_prime_UTR 40.0%
GATTTGAACTCCATCCTATG+CGG + Chr2:71044353-71044372 MsG0280010532.01.T01:intron 40.0%
GCCCACTTAAATTGACACAA+GGG + Chr2:71045317-71045336 MsG0280010532.01.T01:intron 40.0%
GGCATAAGCAGAAAATTTGG+TGG + Chr2:71042379-71042398 MsG0280010532.01.T01:intron 40.0%
GGGGTTTGAATTGATCTTCA+TGG + Chr2:71043234-71043253 MsG0280010532.01.T01:intron 40.0%
GTACAAGTACAACGACCTTA+TGG + Chr2:71045093-71045112 MsG0280010532.01.T01:CDS 40.0%
GTGAAAATGAACGAACCCAT+TGG - Chr2:71040840-71040859 None:intergenic 40.0%
TAACATCGATCTCAGCCAAT+GGG + Chr2:71040822-71040841 MsG0280010532.01.T01:CDS 40.0%
TAGAAATAGCTGGGTTTGGA+AGG - Chr2:71045185-71045204 None:intergenic 40.0%
TCATCATTGCAGCAGAAGAA+AGG - Chr2:71045017-71045036 None:intergenic 40.0%
TCATTAAACTCTCACCTCAC+GGG + Chr2:71042950-71042969 MsG0280010532.01.T01:intron 40.0%
TCTGCTACCATTTCACATAG+TGG + Chr2:71042158-71042177 MsG0280010532.01.T01:intron 40.0%
TGAGAAGCTTAGTGCTTTGT+TGG - Chr2:71040723-71040742 None:intergenic 40.0%
TGCAGTAGACAGATGAGTTA+TGG + Chr2:71043757-71043776 MsG0280010532.01.T01:intron 40.0%
TGTACTTGTACAGTACCAGT+AGG - Chr2:71045084-71045103 None:intergenic 40.0%
TTAACATCGATCTCAGCCAA+TGG + Chr2:71040821-71040840 MsG0280010532.01.T01:CDS 40.0%
TTGTCTTTCTGTTGCATGCT+TGG + Chr2:71043262-71043281 MsG0280010532.01.T01:intron 40.0%
! AAATTTGGTGGAAAACCTCC+TGG + Chr2:71042391-71042410 MsG0280010532.01.T01:CDS 40.0%
! AATTTGGTGGAAAACCTCCT+GGG + Chr2:71042392-71042411 MsG0280010532.01.T01:CDS 40.0%
! GGATTTCGAGTATGAAGTTC+AGG + Chr2:71042415-71042434 MsG0280010532.01.T01:CDS 40.0%
! TAGCAGCTGATATTGGCTAT+TGG - Chr2:71041834-71041853 None:intergenic 40.0%
! TCCTTTTAATATGGGGAAGG+GGG + Chr2:71044278-71044297 MsG0280010532.01.T01:intron 40.0%
! TCTCTAGAAATAGCTGGGTT+TGG - Chr2:71045189-71045208 None:intergenic 40.0%
! TCTGAGACATTGTTGCGTTA+GGG - Chr2:71040675-71040694 None:intergenic 40.0%
! TGTAGCATTGGAGTACCATA+AGG - Chr2:71045111-71045130 None:intergenic 40.0%
! TTTGAGTTACAGTCTGGTCT+TGG + Chr2:71041576-71041595 MsG0280010532.01.T01:intron 40.0%
! TTTTGACCTTATACCCGCAT+AGG - Chr2:71044370-71044389 None:intergenic 40.0%
!! CCCAGCTATTTCTAGAGAAA+AGG + Chr2:71045191-71045210 MsG0280010532.01.T01:CDS 40.0%
!! GATTGTTTTGCAGAGTCGTA+AGG + Chr2:71040916-71040935 MsG0280010532.01.T01:intron 40.0%
!! TTCTGAGACATTGTTGCGTT+AGG - Chr2:71040676-71040695 None:intergenic 40.0%
AAACCAGCTCTGCCATTCAT+GGG - Chr2:71043129-71043148 None:intergenic 45.0%
AACCCCCTTGAAAAGGGAAA+CGG - Chr2:71043557-71043576 None:intergenic 45.0%
ACAGTACCAGTAGGATGAAG+TGG - Chr2:71045075-71045094 None:intergenic 45.0%
ACGAATTGACCCTTTCGTTG+AGG + Chr2:71040759-71040778 MsG0280010532.01.T01:CDS 45.0%
ACTACTAAGCTGACACCTCA+TGG + Chr2:71044394-71044413 MsG0280010532.01.T01:intron 45.0%
ACTGGAAGCAGTACCAACTA+TGG + Chr2:71043870-71043889 MsG0280010532.01.T01:CDS 45.0%
AGAGATGGTATCTGCAAGGT+TGG - Chr2:71044895-71044914 None:intergenic 45.0%
AGATACTCAGATAGCGTTGC+GGG - Chr2:71042141-71042160 None:intergenic 45.0%
AGGTCCAGATGAGTGGTTAT+AGG + Chr2:71045816-71045835 MsG0280010532.01.T01:three_prime_UTR 45.0%
AGTACCAACTATGGCAGTCA+TGG + Chr2:71043879-71043898 MsG0280010532.01.T01:CDS 45.0%
ATCAGGTCGTTTATTGCAGG+CGG + Chr2:71044756-71044775 MsG0280010532.01.T01:intron 45.0%
ATGATGAAGGTCCAGATGAG+TGG + Chr2:71045809-71045828 MsG0280010532.01.T01:three_prime_UTR 45.0%
ATGGAGTTCAAATCCCCTTG+AGG - Chr2:71044347-71044366 None:intergenic 45.0%
ATTAGGGTTAGGGTTAGGGT+TGG - Chr2:71040625-71040644 None:intergenic 45.0%
CAACGAAAGGGTCAATTCGT+TGG - Chr2:71040759-71040778 None:intergenic 45.0%
CAATGGACACACATGTTTGG+AGG - Chr2:71041235-71041254 None:intergenic 45.0%
CAGAGTCGTAAGGATGTTGA+AGG + Chr2:71040926-71040945 MsG0280010532.01.T01:intron 45.0%
CAGATACTCAGATAGCGTTG+CGG - Chr2:71042142-71042161 None:intergenic 45.0%
CAGTTTGTCACCTTGGTTGT+TGG + Chr2:71041531-71041550 MsG0280010532.01.T01:intron 45.0%
CTCCAAACATGTGTGTCCAT+TGG + Chr2:71041233-71041252 MsG0280010532.01.T01:intron 45.0%
CTGATCAGGTCGTTTATTGC+AGG + Chr2:71044753-71044772 MsG0280010532.01.T01:intron 45.0%
CTTATGTACCAGGGAACCAA+AGG - Chr2:71044111-71044130 None:intergenic 45.0%
GAAACGGCGAATATTAGCAG+CGG + Chr2:71042772-71042791 MsG0280010532.01.T01:intron 45.0%
GAAATAGCTGGGTTTGGAAG+GGG - Chr2:71045183-71045202 None:intergenic 45.0%
GACTTTGCAACTCACACCTT+GGG + Chr2:71043416-71043435 MsG0280010532.01.T01:intron 45.0%
GCACATCTGCTAACGAATAG+TGG - Chr2:71041859-71041878 None:intergenic 45.0%
GCTTCACAAGATTTGTGGCT+CGG - Chr2:71044975-71044994 None:intergenic 45.0%
GGAGTAGATGTTGGAAGAGA+TGG - Chr2:71044910-71044929 None:intergenic 45.0%
GGTCCAGATGAGTGGTTATA+GGG + Chr2:71045817-71045836 MsG0280010532.01.T01:three_prime_UTR 45.0%
GTAGGTATGGATGAAGACAC+GGG - Chr2:71045045-71045064 None:intergenic 45.0%
GTCCAGATGAGTGGTTATAG+GGG + Chr2:71045818-71045837 MsG0280010532.01.T01:three_prime_UTR 45.0%
GTGATGAATCGTCGCAATAC+TGG + Chr2:71041118-71041137 MsG0280010532.01.T01:CDS 45.0%
GTGCCAGCCTTTCAATATGT+AGG + Chr2:71042018-71042037 MsG0280010532.01.T01:intron 45.0%
GTTTGGAAGGGGAGAAGAAA+CGG - Chr2:71045172-71045191 None:intergenic 45.0%
TAAACCAGCTCTGCCATTCA+TGG - Chr2:71043130-71043149 None:intergenic 45.0%
TAATGCTCGCGAATGTGAAG+AGG + Chr2:71042493-71042512 MsG0280010532.01.T01:CDS 45.0%
TACCAGTAGGATGAAGTGGA+GGG - Chr2:71045071-71045090 None:intergenic 45.0%
TAGGTATGGATGAAGACACG+GGG - Chr2:71045044-71045063 None:intergenic 45.0%
TCCCCCTTCCCCATATTAAA+AGG - Chr2:71044282-71044301 None:intergenic 45.0%
TCTTTCCCAACACACTTCCA+CGG + Chr2:71043343-71043362 MsG0280010532.01.T01:intron 45.0%
TGACTTTGCAACTCACACCT+TGG + Chr2:71043415-71043434 MsG0280010532.01.T01:intron 45.0%
TGAGGATAGTACAATGAGGG+GGG - Chr2:71043676-71043695 None:intergenic 45.0%
TGAGTGCATGATGCAGAAAG+TGG - Chr2:71041727-71041746 None:intergenic 45.0%
TGATGCAGAAAGTGGAATGC+CGG - Chr2:71041719-71041738 None:intergenic 45.0%
TGATTGGAAACTACCCGACT+AGG + Chr2:71044431-71044450 MsG0280010532.01.T01:intron 45.0%
TGGAAGAGATGGTATCTGCA+AGG - Chr2:71044899-71044918 None:intergenic 45.0%
TTATAGAGACAGATCGTCCG+TGG - Chr2:71043363-71043382 None:intergenic 45.0%
TTGCAGTGAGTTTGAGGAAC+TGG + Chr2:71043852-71043871 MsG0280010532.01.T01:intron 45.0%
TTTGGAAGGGGAGAAGAAAC+GGG - Chr2:71045171-71045190 None:intergenic 45.0%
! AAGACGGAAAGAGAGTGCAA+TGG - Chr2:71040581-71040600 None:intergenic 45.0%
! ATTTGGTGGAAAACCTCCTG+GGG + Chr2:71042393-71042412 MsG0280010532.01.T01:CDS 45.0%
! GATGAGACCTTTAACTTCGG+AGG - Chr2:71043062-71043081 None:intergenic 45.0%
! GGAAGTGTGTTGGGAAAGAT+AGG - Chr2:71043342-71043361 None:intergenic 45.0%
! GGTGACTTTGGTTTCTGATC+TGG + Chr2:71042913-71042932 MsG0280010532.01.T01:intron 45.0%
! GTGCTTTGTTGGTCGAGATT+TGG - Chr2:71040712-71040731 None:intergenic 45.0%
! TGCACCGTTTCCCTTTTCAA+GGG + Chr2:71043550-71043569 MsG0280010532.01.T01:intron 45.0%
! TTGCACCGTTTCCCTTTTCA+AGG + Chr2:71043549-71043568 MsG0280010532.01.T01:intron 45.0%
!! CACTAGCTTTCCAACAACCA+AGG - Chr2:71041544-71041563 None:intergenic 45.0%
!! GCGGATAGATAGGCTTTGAA+TGG + Chr2:71042791-71042810 MsG0280010532.01.T01:intron 45.0%
!! GTTGATGATGATGGCTCAAG+AGG - Chr2:71043910-71043929 None:intergenic 45.0%
!! AATTATAATTATTTAATTAG+TGG + Chr2:71042892-71042911 MsG0280010532.01.T01:intron 5.0%
!! ACAAATAAATAAATAAATAA+TGG - Chr2:71045435-71045454 None:intergenic 5.0%
AAAGGTCCGAGATGCTCTTC+TGG + Chr2:71045209-71045228 MsG0280010532.01.T01:CDS 50.0%
ACCAGTAGGATGAAGTGGAG+GGG - Chr2:71045070-71045089 None:intergenic 50.0%
ACTCATGCTGCTACACCAGT+TGG + Chr2:71044862-71044881 MsG0280010532.01.T01:CDS 50.0%
ACTGGTGTAGCAGCATGAGT+TGG - Chr2:71044862-71044881 None:intergenic 50.0%
AGATGGGAACCCCCTTGAAA+AGG - Chr2:71043564-71043583 None:intergenic 50.0%
AGGTATGGATGAAGACACGG+GGG - Chr2:71045043-71045062 None:intergenic 50.0%
ATTGCAGCAGAAGAAAGGGG+AGG - Chr2:71045012-71045031 None:intergenic 50.0%
CACCCCTATAACCACTCATC+TGG - Chr2:71045823-71045842 None:intergenic 50.0%
CCAACTATGGCAGTCATGGA+TGG + Chr2:71043883-71043902 MsG0280010532.01.T01:CDS 50.0%
CCATCCATGACTGCCATAGT+TGG - Chr2:71043886-71043905 None:intergenic 50.0%
CCATTCATGGGAGAGCAACA+AGG - Chr2:71043117-71043136 None:intergenic 50.0%
CCTTGTTGCTCTCCCATGAA+TGG + Chr2:71043114-71043133 MsG0280010532.01.T01:intron 50.0%
CGTTTATTGCAGGCGGCTAT+GGG + Chr2:71044763-71044782 MsG0280010532.01.T01:intron 50.0%
CTCATGCTGCTACACCAGTT+GGG + Chr2:71044863-71044882 MsG0280010532.01.T01:CDS 50.0%
CTCCATCCTATGCGGGTATA+AGG + Chr2:71044361-71044380 MsG0280010532.01.T01:intron 50.0%
CTGGCACTATTGAGTAACGG+TGG - Chr2:71041298-71041317 None:intergenic 50.0%
CTTCATACTCGAAATCCCCC+AGG - Chr2:71042412-71042431 None:intergenic 50.0%
GAAGAAACGGGAGCAAGTGA+AGG - Chr2:71045159-71045178 None:intergenic 50.0%
GACCTTATACCCGCATAGGA+TGG - Chr2:71044366-71044385 None:intergenic 50.0%
GAGCACCATATGCTCATCAG+AGG - Chr2:71044639-71044658 None:intergenic 50.0%
GATAGTACAATGAGGGGGGA+GGG - Chr2:71043672-71043691 None:intergenic 50.0%
GATGGGAACCCCCTTGAAAA+GGG - Chr2:71043563-71043582 None:intergenic 50.0%
GGGGATTAGGGTTAGGGTTA+GGG - Chr2:71040629-71040648 None:intergenic 50.0%
GGTGGAAATGGCTGTAGCAT+TGG - Chr2:71045123-71045142 None:intergenic 50.0%
GGTGTTAGCGGAGTAGATGT+TGG - Chr2:71044919-71044938 None:intergenic 50.0%
GTACCAGTAGGATGAAGTGG+AGG - Chr2:71045072-71045091 None:intergenic 50.0%
TCGTTTATTGCAGGCGGCTA+TGG + Chr2:71044762-71044781 MsG0280010532.01.T01:intron 50.0%
TGGGGATTAGGGTTAGGGTT+AGG - Chr2:71040630-71040649 None:intergenic 50.0%
TTTGGTGGAAAACCTCCTGG+GGG + Chr2:71042394-71042413 MsG0280010532.01.T01:CDS 50.0%
! ACTTGTGTCCTTTGGTTCCC+TGG + Chr2:71044100-71044119 MsG0280010532.01.T01:intron 50.0%
! ATCGTCCGTGGAAGTGTGTT+GGG - Chr2:71043351-71043370 None:intergenic 50.0%
! CAAGGTGCCTCCGAAGTTAA+AGG + Chr2:71043052-71043071 MsG0280010532.01.T01:CDS 50.0%
! GCGCTGGCACTATTGAGTAA+CGG - Chr2:71041301-71041320 None:intergenic 50.0%
!! CACCGTTTCCCTTTTCAAGG+GGG + Chr2:71043552-71043571 MsG0280010532.01.T01:intron 50.0%
!! CTTTAACTTCGGAGGCACCT+TGG - Chr2:71043054-71043073 None:intergenic 50.0%
!! GAGTGGTTATAGGGGTGCTA+AGG + Chr2:71045826-71045845 MsG0280010532.01.T01:three_prime_UTR 50.0%
!! GCACCGTTTCCCTTTTCAAG+GGG + Chr2:71043551-71043570 MsG0280010532.01.T01:intron 50.0%
AAGTGGAGGGGCAGTAGGTA+TGG - Chr2:71045058-71045077 None:intergenic 55.0%
CAATAGTGCCAGCGCCACTA+TGG + Chr2:71041306-71041325 MsG0280010532.01.T01:intron 55.0%
CATACTCGAAATCCCCCAGG+AGG - Chr2:71042409-71042428 None:intergenic 55.0%
GAAACGGGAGCAAGTGAAGG+TGG - Chr2:71045156-71045175 None:intergenic 55.0%
GGATAGTACAATGAGGGGGG+AGG - Chr2:71043673-71043692 None:intergenic 55.0%
GGTATCTGCAAGGTTGGCAG+TGG - Chr2:71044889-71044908 None:intergenic 55.0%
GGTATGGATGAAGACACGGG+GGG - Chr2:71045042-71045061 None:intergenic 55.0%
GGTGGAGTTGGAGGTGGAAA+TGG - Chr2:71045135-71045154 None:intergenic 55.0%
TCTCCCATGAATGGCAGAGC+TGG + Chr2:71043123-71043142 MsG0280010532.01.T01:intron 55.0%
TGCTCTTCTGGTGCTCGTTC+AGG + Chr2:71045221-71045240 MsG0280010532.01.T01:CDS 55.0%
TTGCAGGCGGCTATGGGTAT+CGG + Chr2:71044769-71044788 MsG0280010532.01.T01:intron 55.0%
! GATCGTCCGTGGAAGTGTGT+TGG - Chr2:71043352-71043371 None:intergenic 55.0%
! GCATCATGCTGGGGTGTTAG+CGG - Chr2:71044931-71044950 None:intergenic 55.0%
!! ACGAGGAGCGCTTATGTACC+AGG - Chr2:71044121-71044140 None:intergenic 55.0%
!! AGTGAAGGTGGTGGAGTTGG+AGG - Chr2:71045144-71045163 None:intergenic 55.0%
!! CGAGCACCAGAAGAGCATCT+CGG - Chr2:71045218-71045237 None:intergenic 55.0%
!! CGAGGAGCGCTTATGTACCA+GGG - Chr2:71044120-71044139 None:intergenic 55.0%
!! GACTCAGGAGCATCATGCTG+GGG - Chr2:71044940-71044959 None:intergenic 55.0%
!! GCAAGTGAAGGTGGTGGAGT+TGG - Chr2:71045147-71045166 None:intergenic 55.0%
!! GGACTCAGGAGCATCATGCT+GGG - Chr2:71044941-71044960 None:intergenic 55.0%
!! TGGACTCAGGAGCATCATGC+TGG - Chr2:71044942-71044961 None:intergenic 55.0%
AAGGTTGGCAGTGGCCCAAC+TGG - Chr2:71044880-71044899 None:intergenic 60.0%
ACGGGAGCAAGTGAAGGTGG+TGG - Chr2:71045153-71045172 None:intergenic 60.0%
CGGGCGTACACATGTGCATC+TGG + Chr2:71042969-71042988 MsG0280010532.01.T01:intron 60.0%
GCCCCTCCACTTCATCCTAC+TGG + Chr2:71045066-71045085 MsG0280010532.01.T01:CDS 60.0%
GGATGAAGTGGAGGGGCAGT+AGG - Chr2:71045063-71045082 None:intergenic 60.0%
TATAGCGGCCATAGTGGCGC+TGG - Chr2:71041317-71041336 None:intergenic 60.0%
TGCACATGTGTACGCCCGTG+AGG - Chr2:71042967-71042986 None:intergenic 60.0%
TGCAGGCGGCTATGGGTATC+GGG + Chr2:71044770-71044789 MsG0280010532.01.T01:intron 60.0%
!! GAAGGTGGTGGAGTTGGAGG+TGG - Chr2:71045141-71045160 None:intergenic 60.0%
CGGCTGCTGCTGTTGGACTC+AGG - Chr2:71044955-71044974 None:intergenic 65.0%
! TGTGGCTCGGCTGCTGCTGT+TGG - Chr2:71044962-71044981 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 71040527 71046007 71040527 ID=MsG0280010532.01;Name=MsG0280010532.01
Chr2 mRNA 71040527 71046007 71040527 ID=MsG0280010532.01.T01;Parent=MsG0280010532.01;Name=MsG0280010532.01.T01;_AED=0.45;_eAED=0.46;_QI=158|0.85|0.87|1|0.85|0.87|8|451|379
Chr2 exon 71040527 71040843 71040527 ID=MsG0280010532.01.T01:exon:10381;Parent=MsG0280010532.01.T01
Chr2 exon 71040929 71041005 71040929 ID=MsG0280010532.01.T01:exon:10382;Parent=MsG0280010532.01.T01
Chr2 exon 71041090 71041139 71041090 ID=MsG0280010532.01.T01:exon:10383;Parent=MsG0280010532.01.T01
Chr2 exon 71042390 71042534 71042390 ID=MsG0280010532.01.T01:exon:10384;Parent=MsG0280010532.01.T01
Chr2 exon 71043034 71043090 71043034 ID=MsG0280010532.01.T01:exon:10385;Parent=MsG0280010532.01.T01
Chr2 exon 71043858 71043984 71043858 ID=MsG0280010532.01.T01:exon:10386;Parent=MsG0280010532.01.T01
Chr2 exon 71044775 71045242 71044775 ID=MsG0280010532.01.T01:exon:10387;Parent=MsG0280010532.01.T01
Chr2 exon 71045500 71046007 71045500 ID=MsG0280010532.01.T01:exon:10388;Parent=MsG0280010532.01.T01
Chr2 five_prime_UTR 71040527 71040684 71040527 ID=MsG0280010532.01.T01:five_prime_utr;Parent=MsG0280010532.01.T01
Chr2 CDS 71040685 71040843 71040685 ID=MsG0280010532.01.T01:cds;Parent=MsG0280010532.01.T01
Chr2 CDS 71040929 71041005 71040929 ID=MsG0280010532.01.T01:cds;Parent=MsG0280010532.01.T01
Chr2 CDS 71041090 71041139 71041090 ID=MsG0280010532.01.T01:cds;Parent=MsG0280010532.01.T01
Chr2 CDS 71042390 71042534 71042390 ID=MsG0280010532.01.T01:cds;Parent=MsG0280010532.01.T01
Chr2 CDS 71043034 71043090 71043034 ID=MsG0280010532.01.T01:cds;Parent=MsG0280010532.01.T01
Chr2 CDS 71043858 71043984 71043858 ID=MsG0280010532.01.T01:cds;Parent=MsG0280010532.01.T01
Chr2 CDS 71044775 71045242 71044775 ID=MsG0280010532.01.T01:cds;Parent=MsG0280010532.01.T01
Chr2 CDS 71045500 71045556 71045500 ID=MsG0280010532.01.T01:cds;Parent=MsG0280010532.01.T01
Chr2 three_prime_UTR 71045557 71046007 71045557 ID=MsG0280010532.01.T01:three_prime_utr;Parent=MsG0280010532.01.T01
Gene Sequence

>MsG0280010532.01.T01

ATGTCTCAGAACGGAAAATTGATGCCAAATCTCGACCAACAAAGCACTAAGCTTCTCAATCTCACTGTTCTCCAACGAATTGACCCTTTCGTTGAGGAAATTCTCATTACTGCTGCTCATGTTACATTCTATGAGTTTAACATCGATCTCAGCCAATGGAGTCGTAAGGATGTTGAAGGATCTCTCTTTGTTGTTAAGAGGTTTGAAATTTTGGTTTTTTTTAATGGGGTTGATGGAAATACTCAACCAAGATTTCAGTTTATTGTGATGAATCGTCGCAATACTGAAAATTTGGTGGAAAACCTCCTGGGGGATTTCGAGTATGAAGTTCAGGTTCCATATCTATTGTATAGAAATGCTGCTCAAGAAGTGAATGGTATTTGGTTCTATAATGCTCGCGAATGTGAAGAGGTTGCAAATCTTTTTAGCAGGATTCTTAATGCATATGCCAAGGTGCCTCCGAAGTTAAAGGTCTCATCTACAAAGAGTGAGTTTGAGGAACTGGAAGCAGTACCAACTATGGCAGTCATGGATGGTCCTCTTGAGCCATCATCATCAACTACTTCCAATGTAGCTGATGTTCCTGATGATCCATCCTTTATAAATTTCTTCAGTGCGGCTATGGGTATCGGGAATACTTCAAATGCTCATATCACCGGACAACCTTATCAGTCTTCTGCTACAATTTCTTCTTCTGGGCCAACTCATGCTGCTACACCAGTTGGGCCACTGCCAACCTTGCAGATACCATCTCTTCCAACATCTACTCCGCTAACACCCCAGCATGATGCTCCTGAGTCCAACAGCAGCAGCCGAGCCACAAATCTTGTGAAGCCTTCTTTTTTTGTTCCTCCCCTTTCTTCTGCTGCAATGATGATTCCCCCCGTGTCTTCATCCATACCTACTGCCCCTCCACTTCATCCTACTGGTACTGTACAAGTACAACGACCTTATGGTACTCCAATGCTACAGCCATTTCCACCTCCAACTCCACCACCTTCACTTGCTCCCGTTTCTTCTCCCCTTCCAAACCCAGCTATTTCTAGAGAAAAGGTCCGAGATGCTCTTCTGGTGCTCGTTCAGGACAATCAATTCATTGATATGGTTTATAATGCGCTGCTGAATGCTCATCAATCATGA

Protein sequence

>MsG0280010532.01.T01

MSQNGKLMPNLDQQSTKLLNLTVLQRIDPFVEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRFEILVFFNGVDGNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYNARECEEVANLFSRILNAYAKVPPKLKVSSTKSEFEELEAVPTMAVMDGPLEPSSSTTSNVADVPDDPSFINFFSAAMGIGNTSNAHITGQPYQSSATISSSGPTHAATPVGPLPTLQIPSLPTSTPLTPQHDAPESNSSSRATNLVKPSFFVPPLSSAAMMIPPVSSSIPTAPPLHPTGTVQVQRPYGTPMLQPFPPPTPPPSLAPVSSPLPNPAISREKVRDALLVLVQDNQFIDMVYNALLNAHQS*