Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019163.01.T01 | XP_013447253.1 | 96.407 | 167 | 6 | 0 | 1 | 167 | 1 | 167 | 1.00E-109 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019163.01.T01 | Q9C723 | 76.647 | 167 | 39 | 0 | 1 | 167 | 1 | 167 | 1.35E-93 | 289 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019163.01.T01 | A0A072U616 | 96.407 | 167 | 6 | 0 | 1 | 167 | 1 | 167 | 4.79e-110 | 338 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047927.01 | MsG0480019163.01 | 0.814820 | 1.268317e-51 | 8.598136e-49 |
| MsG0080048656.01 | MsG0480019163.01 | -0.827976 | 1.161584e-54 | 1.139194e-51 |
| MsG0080048764.01 | MsG0480019163.01 | -0.814095 | 1.834079e-51 | 1.219236e-48 |
| MsG0180000010.01 | MsG0480019163.01 | 0.818481 | 1.916876e-52 | 1.436583e-49 |
| MsG0180000152.01 | MsG0480019163.01 | -0.813163 | 2.941520e-51 | 1.906457e-48 |
| MsG0180000240.01 | MsG0480019163.01 | 0.823336 | 1.463271e-53 | 1.256236e-50 |
| MsG0180000318.01 | MsG0480019163.01 | 0.836839 | 7.397422e-57 | 9.435183e-54 |
| MsG0180000544.01 | MsG0480019163.01 | 0.827215 | 1.769204e-54 | 1.696961e-51 |
| MsG0180000614.01 | MsG0480019163.01 | -0.813943 | 1.981561e-51 | 1.311802e-48 |
| MsG0180000679.01 | MsG0480019163.01 | -0.830577 | 2.715869e-55 | 2.872916e-52 |
| MsG0180001706.01 | MsG0480019163.01 | 0.812016 | 5.240930e-51 | 3.294374e-48 |
| MsG0180002317.01 | MsG0480019163.01 | 0.818743 | 1.671734e-52 | 1.261895e-49 |
| MsG0180002482.01 | MsG0480019163.01 | -0.853714 | 1.990307e-61 | 4.340128e-58 |
| MsG0180002716.01 | MsG0480019163.01 | 0.820034 | 8.490033e-53 | 6.643276e-50 |
| MsG0180002750.01 | MsG0480019163.01 | 0.819457 | 1.149961e-52 | 8.854347e-50 |
| MsG0180002940.01 | MsG0480019163.01 | 0.854010 | 1.635964e-61 | 3.602798e-58 |
| MsG0180003174.01 | MsG0480019163.01 | -0.820727 | 5.888437e-53 | 4.696509e-50 |
| MsG0180003767.01 | MsG0480019163.01 | 0.807319 | 5.355771e-50 | 2.973996e-47 |
| MsG0180003793.01 | MsG0480019163.01 | -0.804227 | 2.389668e-49 | 1.225414e-46 |
| MsG0180004335.01 | MsG0480019163.01 | 0.832667 | 8.292968e-56 | 9.332958e-53 |
| MsG0180004603.01 | MsG0480019163.01 | -0.810409 | 1.169213e-50 | 7.042245e-48 |
| MsG0180004886.01 | MsG0480019163.01 | 0.842188 | 3.012738e-58 | 4.531709e-55 |
| MsG0180005334.01 | MsG0480019163.01 | -0.801709 | 7.924191e-49 | 3.810158e-46 |
| MsG0180005544.01 | MsG0480019163.01 | 0.838305 | 3.112675e-57 | 4.151761e-54 |
| MsG0180005676.01 | MsG0480019163.01 | 0.858688 | 6.939545e-63 | 1.786031e-59 |
| MsG0180006220.01 | MsG0480019163.01 | -0.818019 | 2.439013e-52 | 1.804675e-49 |
| MsG0280006422.01 | MsG0480019163.01 | -0.801727 | 7.853771e-49 | 3.778091e-46 |
| MsG0280010884.01 | MsG0480019163.01 | 0.806064 | 9.862959e-50 | 5.302604e-47 |
| MsG0280011059.01 | MsG0480019163.01 | 0.866363 | 3.012284e-65 | 1.012538e-61 |
| MsG0380012661.01 | MsG0480019163.01 | 0.855071 | 8.069854e-62 | 1.840426e-58 |
| MsG0380013794.01 | MsG0480019163.01 | 0.848272 | 6.812614e-60 | 1.243516e-56 |
| MsG0380014401.01 | MsG0480019163.01 | 0.824394 | 8.266582e-54 | 7.312409e-51 |
| MsG0480019160.01 | MsG0480019163.01 | 0.808942 | 2.416516e-50 | 1.400077e-47 |
| MsG0480019161.01 | MsG0480019163.01 | 0.891823 | 2.794085e-74 | 2.488695e-70 |
| MsG0480019162.01 | MsG0480019163.01 | 0.921479 | 3.393369e-88 | 1.216915e-83 |
| MsG0480019163.01 | MsG0480019380.01 | -0.829645 | 4.584923e-55 | 4.721117e-52 |
| MsG0480019163.01 | MsG0480020874.01 | -0.820726 | 5.889188e-53 | 4.697065e-50 |
| MsG0480019163.01 | MsG0480021448.01 | -0.813395 | 2.615774e-51 | 1.706282e-48 |
| MsG0480019163.01 | MsG0480021453.01 | -0.803353 | 3.629501e-49 | 1.819853e-46 |
| MsG0480019163.01 | MsG0480021490.01 | 0.884834 | 1.366509e-71 | 9.154869e-68 |
| MsG0480019163.01 | MsG0480021776.01 | 0.863739 | 2.007135e-64 | 6.150576e-61 |
| MsG0480019163.01 | MsG0480021845.01 | 0.852263 | 5.176929e-61 | 1.075781e-57 |
| MsG0480019163.01 | MsG0480022035.01 | -0.805833 | 1.102736e-49 | 5.893726e-47 |
| MsG0480019163.01 | MsG0480022052.01 | 0.806518 | 7.910644e-50 | 4.302512e-47 |
| MsG0480019163.01 | MsG0480022340.01 | 0.813104 | 3.030243e-51 | 1.960815e-48 |
| MsG0480019163.01 | MsG0480022768.01 | -0.825002 | 5.942537e-54 | 5.350145e-51 |
| MsG0480019163.01 | MsG0480022956.01 | 0.822993 | 1.759035e-53 | 1.495733e-50 |
| MsG0480019163.01 | MsG0480023814.01 | -0.824390 | 8.286327e-54 | 7.329131e-51 |
| MsG0480019163.01 | MsG0480023973.01 | 0.876904 | 9.629858e-69 | 4.750384e-65 |
| MsG0480019163.01 | MsG0580024458.01 | 0.812850 | 3.445434e-51 | 2.214395e-48 |
| MsG0480019163.01 | MsG0580025182.01 | 0.833766 | 4.417608e-56 | 5.137717e-53 |
| MsG0480019163.01 | MsG0580025936.01 | -0.808535 | 2.953179e-50 | 1.692826e-47 |
| MsG0480019163.01 | MsG0580026777.01 | -0.817644 | 2.962905e-52 | 2.169908e-49 |
| MsG0480019163.01 | MsG0580028044.01 | -0.818726 | 1.686700e-52 | 1.272602e-49 |
| MsG0480019163.01 | MsG0580029717.01 | -0.815737 | 7.929027e-52 | 5.512122e-49 |
| MsG0480019163.01 | MsG0680031333.01 | 0.851620 | 7.884383e-61 | 1.605162e-57 |
| MsG0480019163.01 | MsG0680031446.01 | 0.842142 | 3.097146e-58 | 4.652353e-55 |
| MsG0480019163.01 | MsG0680031646.01 | -0.801323 | 9.504686e-49 | 4.525977e-46 |
| MsG0480019163.01 | MsG0680031694.01 | -0.812632 | 3.845449e-51 | 2.457558e-48 |
| MsG0480019163.01 | MsG0680031967.01 | -0.842716 | 2.181615e-58 | 3.336292e-55 |
| MsG0480019163.01 | MsG0680032430.01 | -0.807862 | 4.107511e-50 | 2.313130e-47 |
| MsG0480019163.01 | MsG0680032510.01 | 0.842538 | 2.433128e-58 | 3.700895e-55 |
| MsG0480019163.01 | MsG0680035659.01 | -0.819716 | 1.003616e-52 | 7.783420e-50 |
| MsG0480019163.01 | MsG0680035704.01 | -0.802644 | 5.087464e-49 | 2.505145e-46 |
| MsG0480019163.01 | MsG0780035989.01 | 0.832218 | 1.071671e-55 | 1.189983e-52 |
| MsG0480019163.01 | MsG0780036184.01 | 0.841172 | 5.581231e-58 | 8.132900e-55 |
| MsG0480019163.01 | MsG0780038309.01 | 0.844720 | 6.346448e-59 | 1.033765e-55 |
| MsG0480019163.01 | MsG0780038400.01 | -0.806173 | 9.352851e-50 | 5.042472e-47 |
| MsG0480019163.01 | MsG0780038892.01 | -0.802722 | 4.901309e-49 | 2.418461e-46 |
| MsG0480019163.01 | MsG0780039867.01 | 0.800468 | 1.421057e-48 | 6.621645e-46 |
| MsG0480019163.01 | MsG0780040148.01 | 0.832472 | 9.270887e-56 | 1.037269e-52 |
| MsG0480019163.01 | MsG0780040476.01 | 0.802051 | 6.738954e-49 | 3.268717e-46 |
| MsG0480019163.01 | MsG0780040596.01 | -0.804327 | 2.278668e-49 | 1.171517e-46 |
| MsG0480019163.01 | MsG0780040858.01 | -0.812832 | 3.476209e-51 | 2.233100e-48 |
| MsG0480019163.01 | MsG0780041441.01 | -0.823469 | 1.362229e-53 | 1.173921e-50 |
| MsG0480019163.01 | MsG0780041470.01 | 0.830142 | 3.468612e-55 | 3.623394e-52 |
| MsG0480019163.01 | MsG0780041507.01 | -0.806673 | 7.336929e-50 | 4.006154e-47 |
| MsG0480019163.01 | MsG0880043027.01 | 0.804507 | 2.089690e-49 | 1.079318e-46 |
| MsG0480019163.01 | MsG0880044225.01 | 0.814516 | 1.480618e-51 | 9.956191e-49 |
| MsG0480019163.01 | MsG0880045010.01 | 0.815951 | 7.106914e-52 | 4.969054e-49 |
| MsG0480019163.01 | MsG0880045555.01 | 0.811563 | 6.575021e-51 | 4.083466e-48 |
| MsG0480019163.01 | MsG0880045605.01 | 0.870943 | 9.952900e-67 | 3.943154e-63 |
| MsG0480019163.01 | MsG0880045704.01 | 0.810478 | 1.129855e-50 | 6.817815e-48 |
| MsG0480019163.01 | MsG0880046126.01 | -0.815650 | 8.293564e-52 | 5.751579e-49 |
| MsG0480019163.01 | MsG0880046289.01 | 0.824162 | 9.371123e-54 | 8.235611e-51 |
| MsG0480019163.01 | MsG0880046384.01 | 0.856800 | 2.518404e-62 | 6.081796e-59 |
| MsG0480019163.01 | MsG0880046825.01 | 0.846836 | 1.690785e-59 | 2.947840e-56 |
| MsG0480019163.01 | MsG0880046963.01 | 0.825127 | 5.552905e-54 | 5.016848e-51 |
| MsG0480019163.01 | MsG0880047179.01 | 0.832622 | 8.510586e-56 | 9.564661e-53 |
| MsG0480019163.01 | MsG0880047427.01 | -0.825887 | 3.669070e-54 | 3.387541e-51 |
| MsG0480019163.01 | MsG0880047689.01 | 0.821117 | 4.788440e-53 | 3.861114e-50 |
| MsG0480019163.01 | MsG0880047763.01 | -0.813937 | 1.987818e-51 | 1.315756e-48 |
| MsG0380015027.01 | MsG0480019163.01 | -0.816079 | 6.652722e-52 | 4.668130e-49 |
| MsG0380015066.01 | MsG0480019163.01 | 0.805440 | 1.333366e-49 | 7.054527e-47 |
| MsG0380015212.01 | MsG0480019163.01 | 0.842919 | 1.926482e-58 | 2.964878e-55 |
| MsG0380015598.01 | MsG0480019163.01 | 0.828092 | 1.089586e-54 | 1.072172e-51 |
| MsG0380016191.01 | MsG0480019163.01 | 0.845608 | 3.651923e-59 | 6.119039e-56 |
| MsG0380016347.01 | MsG0480019163.01 | 0.813260 | 2.800285e-51 | 1.819770e-48 |
| MsG0380016828.01 | MsG0480019163.01 | 0.892806 | 1.129621e-74 | 1.048350e-70 |
| MsG0380017226.01 | MsG0480019163.01 | -0.812443 | 4.229202e-51 | 2.689544e-48 |
| MsG0380017263.01 | MsG0480019163.01 | 0.828822 | 7.259692e-55 | 7.296586e-52 |
| MsG0380017776.01 | MsG0480019163.01 | 0.819806 | 9.572871e-53 | 7.442943e-50 |
| MsG0280007193.01 | MsG0480019163.01 | 0.829068 | 6.330567e-55 | 6.408521e-52 |
| MsG0280007723.01 | MsG0480019163.01 | 0.812973 | 3.237424e-51 | 2.087586e-48 |
| MsG0280009109.01 | MsG0480019163.01 | -0.863034 | 3.319647e-64 | 9.923391e-61 |
| MsG0280010204.01 | MsG0480019163.01 | -0.804372 | 2.229658e-49 | 1.147677e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019163.01.T01 | MTR_8g099885 | 96.407 | 167 | 6 | 0 | 1 | 167 | 1 | 167 | 1.22e-113 | 338 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019163.01.T01 | AT1G55090 | 76.647 | 167 | 39 | 0 | 1 | 167 | 1 | 167 | 1.38e-94 | 289 |
Find 45 sgRNAs with CRISPR-Local
Find 51 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGACGGCGCCGGCTTGTT+TGG | 0.281693 | 4:+15239615 | None:intergenic |
| GTCTTTGATTTGTAGAAGAT+TGG | 0.320727 | 4:+15239651 | None:intergenic |
| GGAATGTTTGAAAGATATAT+TGG | 0.334800 | 4:-15239429 | MsG0480019163.01.T01:CDS |
| TTATTATTACGAATGGTTAA+TGG | 0.342917 | 4:+15239528 | None:intergenic |
| GGCGCCGGCTTGTTTGGATT+TGG | 0.343154 | 4:+15239621 | None:intergenic |
| TCCTAATGTTTCCGAGGCAT+TGG | 0.369944 | 4:-15239198 | MsG0480019163.01.T01:CDS |
| CTCTCAGAACCTTTGATAAT+AGG | 0.381396 | 4:+15239365 | None:intergenic |
| GTGGTCTTCACAGCCATAAC+CGG | 0.383872 | 4:+15239567 | None:intergenic |
| ATAACCGGGGATTTCGAGTT+CGG | 0.402614 | 4:+15239582 | None:intergenic |
| AAGATATATTGGTTGGTGAT+TGG | 0.409668 | 4:-15239418 | MsG0480019163.01.T01:CDS |
| AACTTCGATGGTTTACTGCT+TGG | 0.416004 | 4:-15239256 | MsG0480019163.01.T01:CDS |
| GTCGTATCATAATAATCTTT+CGG | 0.425212 | 4:+15239315 | None:intergenic |
| ATCATTTGCAAGGCACGTCT+TGG | 0.435018 | 4:+15239292 | None:intergenic |
| GAACTCGAAATCCCCGGTTA+TGG | 0.442277 | 4:-15239580 | MsG0480019163.01.T01:CDS |
| CCCAATGCCTCGGAAACATT+AGG | 0.451735 | 4:+15239197 | None:intergenic |
| CCTAATGTTTCCGAGGCATT+GGG | 0.451754 | 4:-15239197 | MsG0480019163.01.T01:CDS |
| TAACCGGGGATTTCGAGTTC+GGG | 0.461618 | 4:+15239583 | None:intergenic |
| CAATCTTAACCAATGGGCTA+TGG | 0.462534 | 4:-15239683 | MsG0480019163.01.T01:CDS |
| GATAACATAGTGTGCAGTAT+TGG | 0.463634 | 4:-15239392 | MsG0480019163.01.T01:CDS |
| TTCTGAGAGATACAATTGTC+AGG | 0.465019 | 4:-15239351 | MsG0480019163.01.T01:CDS |
| TCATTTGCAAGGCACGTCTT+GGG | 0.484119 | 4:+15239293 | None:intergenic |
| GGCTTGTTTGGATTTGGAGA+TGG | 0.485111 | 4:+15239627 | None:intergenic |
| TATAATTATCATCATTTGCA+AGG | 0.504657 | 4:+15239282 | None:intergenic |
| TACTTGCAATCTTAACCAAT+GGG | 0.505809 | 4:-15239689 | MsG0480019163.01.T01:CDS |
| GCCGGCGCCGTCATCCGTCT+TGG | 0.507687 | 4:-15239607 | MsG0480019163.01.T01:CDS |
| AATCACGATGAGGCTCTTGA+AGG | 0.512546 | 4:-15239716 | None:intergenic |
| GAAGTTGAAAATCATAAAGT+TGG | 0.522375 | 4:+15239222 | None:intergenic |
| GTTTACTGCTTGGAAACAAA+GGG | 0.526848 | 4:-15239246 | MsG0480019163.01.T01:CDS |
| ACCAAGACGGATGACGGCGC+CGG | 0.530775 | 4:+15239606 | None:intergenic |
| TGGTCTTCACAGCCATAACC+GGG | 0.535392 | 4:+15239568 | None:intergenic |
| TTAACAAAACCATAACCAAA+AGG | 0.535794 | 4:+15239161 | None:intergenic |
| CTACTTGCAATCTTAACCAA+TGG | 0.542643 | 4:-15239690 | MsG0480019163.01.T01:CDS |
| ATTGGAATGCCTATTATCAA+AGG | 0.545628 | 4:-15239374 | MsG0480019163.01.T01:CDS |
| AATCGAATTCCATAGCCCAT+TGG | 0.548373 | 4:+15239674 | None:intergenic |
| GGTTTACTGCTTGGAAACAA+AGG | 0.548451 | 4:-15239247 | MsG0480019163.01.T01:CDS |
| ATCTCCAAATCCAAACAAGC+CGG | 0.565116 | 4:-15239625 | MsG0480019163.01.T01:CDS |
| ATAATTATAGAGAACTTCGA+TGG | 0.573265 | 4:-15239268 | MsG0480019163.01.T01:CDS |
| TTCGGGACCAAGACGGATGA+CGG | 0.577192 | 4:+15239600 | None:intergenic |
| TGTTTGAAAGATATATTGGT+TGG | 0.589747 | 4:-15239425 | MsG0480019163.01.T01:CDS |
| TTTCGAGTTCGGGACCAAGA+CGG | 0.601203 | 4:+15239593 | None:intergenic |
| ACTTCCTCCTAATGTTTCCG+AGG | 0.602942 | 4:-15239204 | MsG0480019163.01.T01:CDS |
| TGGTGTCGAGTTCTAAGAAG+TGG | 0.603974 | 4:+15239548 | None:intergenic |
| GGTCCCGAACTCGAAATCCC+CGG | 0.647848 | 4:-15239586 | MsG0480019163.01.T01:CDS |
| AATGCCTCGGAAACATTAGG+AGG | 0.652440 | 4:+15239200 | None:intergenic |
| GGTCTTCACAGCCATAACCG+GGG | 0.753301 | 4:+15239569 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATTATCATCATTTGCA+AGG | + | Chr4:15239575-15239594 | None:intergenic | 20.0% |
| !! | TTATTATTACGAATGGTTAA+TGG | + | Chr4:15239329-15239348 | None:intergenic | 20.0% |
| !!! | GACTGTTTTTCTATTTTAAT+TGG | - | Chr4:15239382-15239401 | MsG0480019163.01.T01:CDS | 20.0% |
| ! | ATAATTATAGAGAACTTCGA+TGG | - | Chr4:15239586-15239605 | MsG0480019163.01.T01:CDS | 25.0% |
| ! | GAAAGAGTTATTATTACGAA+TGG | + | Chr4:15239336-15239355 | None:intergenic | 25.0% |
| ! | GAAGTTGAAAATCATAAAGT+TGG | + | Chr4:15239635-15239654 | None:intergenic | 25.0% |
| ! | GGAATGTTTGAAAGATATAT+TGG | - | Chr4:15239425-15239444 | MsG0480019163.01.T01:CDS | 25.0% |
| ! | GTCGTATCATAATAATCTTT+CGG | + | Chr4:15239542-15239561 | None:intergenic | 25.0% |
| ! | TGTTTGAAAGATATATTGGT+TGG | - | Chr4:15239429-15239448 | MsG0480019163.01.T01:CDS | 25.0% |
| ! | TTAACAAAACCATAACCAAA+AGG | + | Chr4:15239696-15239715 | None:intergenic | 25.0% |
| ATTGGAATGCCTATTATCAA+AGG | - | Chr4:15239480-15239499 | MsG0480019163.01.T01:intron | 30.0% | |
| TACTTGCAATCTTAACCAAT+GGG | - | Chr4:15239165-15239184 | MsG0480019163.01.T01:CDS | 30.0% | |
| !! | AAATCAGTTCCTTTTGGTTA+TGG | - | Chr4:15239684-15239703 | MsG0480019163.01.T01:CDS | 30.0% |
| !! | AAGATATATTGGTTGGTGAT+TGG | - | Chr4:15239436-15239455 | MsG0480019163.01.T01:intron | 30.0% |
| !! | GTCTTTGATTTGTAGAAGAT+TGG | + | Chr4:15239206-15239225 | None:intergenic | 30.0% |
| CTACTTGCAATCTTAACCAA+TGG | - | Chr4:15239164-15239183 | MsG0480019163.01.T01:CDS | 35.0% | |
| GATAACATAGTGTGCAGTAT+TGG | - | Chr4:15239462-15239481 | MsG0480019163.01.T01:intron | 35.0% | |
| GTTTACTGCTTGGAAACAAA+GGG | - | Chr4:15239608-15239627 | MsG0480019163.01.T01:CDS | 35.0% | |
| ! | CTCTCAGAACCTTTGATAAT+AGG | + | Chr4:15239492-15239511 | None:intergenic | 35.0% |
| ! | GGACAAAAATCAGTTCCTTT+TGG | - | Chr4:15239678-15239697 | MsG0480019163.01.T01:CDS | 35.0% |
| ! | TTCTGAGAGATACAATTGTC+AGG | - | Chr4:15239503-15239522 | MsG0480019163.01.T01:intron | 35.0% |
| AACTTCGATGGTTTACTGCT+TGG | - | Chr4:15239598-15239617 | MsG0480019163.01.T01:CDS | 40.0% | |
| AATCGAATTCCATAGCCCAT+TGG | + | Chr4:15239183-15239202 | None:intergenic | 40.0% | |
| ATCTCCAAATCCAAACAAGC+CGG | - | Chr4:15239229-15239248 | MsG0480019163.01.T01:CDS | 40.0% | |
| GGTTTACTGCTTGGAAACAA+AGG | - | Chr4:15239607-15239626 | MsG0480019163.01.T01:CDS | 40.0% | |
| ! | TGATTTTTGTCCCAATGCCT+CGG | + | Chr4:15239670-15239689 | None:intergenic | 40.0% |
| !! | CAATCTTAACCAATGGGCTA+TGG | - | Chr4:15239171-15239190 | MsG0480019163.01.T01:CDS | 40.0% |
| !! | GTTTTGTTGCTACTGCAGAT+GGG | - | Chr4:15239404-15239423 | MsG0480019163.01.T01:CDS | 40.0% |
| AATGCCTCGGAAACATTAGG+AGG | + | Chr4:15239657-15239676 | None:intergenic | 45.0% | |
| ACTTCCTCCTAATGTTTCCG+AGG | - | Chr4:15239650-15239669 | MsG0480019163.01.T01:CDS | 45.0% | |
| ATCATTTGCAAGGCACGTCT+TGG | + | Chr4:15239565-15239584 | None:intergenic | 45.0% | |
| TCATTTGCAAGGCACGTCTT+GGG | + | Chr4:15239564-15239583 | None:intergenic | 45.0% | |
| TCCTAATGTTTCCGAGGCAT+TGG | - | Chr4:15239656-15239675 | MsG0480019163.01.T01:CDS | 45.0% | |
| ! | CCTAATGTTTCCGAGGCATT+GGG | - | Chr4:15239657-15239676 | MsG0480019163.01.T01:CDS | 45.0% |
| ! | GGCTTGTTTGGATTTGGAGA+TGG | + | Chr4:15239230-15239249 | None:intergenic | 45.0% |
| !! | ATAACCGGGGATTTCGAGTT+CGG | + | Chr4:15239275-15239294 | None:intergenic | 45.0% |
| !! | TGGTGTCGAGTTCTAAGAAG+TGG | + | Chr4:15239309-15239328 | None:intergenic | 45.0% |
| !!! | GGTTTTGTTGCTACTGCAGA+TGG | - | Chr4:15239403-15239422 | MsG0480019163.01.T01:CDS | 45.0% |
| CCCAATGCCTCGGAAACATT+AGG | + | Chr4:15239660-15239679 | None:intergenic | 50.0% | |
| GAACTCGAAATCCCCGGTTA+TGG | - | Chr4:15239274-15239293 | MsG0480019163.01.T01:CDS | 50.0% | |
| GTGGTCTTCACAGCCATAAC+CGG | + | Chr4:15239290-15239309 | None:intergenic | 50.0% | |
| TGGTCTTCACAGCCATAACC+GGG | + | Chr4:15239289-15239308 | None:intergenic | 50.0% | |
| !! | TAACCGGGGATTTCGAGTTC+GGG | + | Chr4:15239274-15239293 | None:intergenic | 50.0% |
| !! | TTTCGAGTTCGGGACCAAGA+CGG | + | Chr4:15239264-15239283 | None:intergenic | 50.0% |
| GGTCTTCACAGCCATAACCG+GGG | + | Chr4:15239288-15239307 | None:intergenic | 55.0% | |
| TTCGGGACCAAGACGGATGA+CGG | + | Chr4:15239257-15239276 | None:intergenic | 55.0% | |
| GGTCCCGAACTCGAAATCCC+CGG | - | Chr4:15239268-15239287 | MsG0480019163.01.T01:CDS | 60.0% | |
| !! | GGCGCCGGCTTGTTTGGATT+TGG | + | Chr4:15239236-15239255 | None:intergenic | 60.0% |
| ! | ACCAAGACGGATGACGGCGC+CGG | + | Chr4:15239251-15239270 | None:intergenic | 65.0% |
| !! | GATGACGGCGCCGGCTTGTT+TGG | + | Chr4:15239242-15239261 | None:intergenic | 65.0% |
| GCCGGCGCCGTCATCCGTCT+TGG | - | Chr4:15239247-15239266 | MsG0480019163.01.T01:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 15239145 | 15239731 | 15239145 | ID=MsG0480019163.01;Name=MsG0480019163.01 |
| Chr4 | mRNA | 15239145 | 15239731 | 15239145 | ID=MsG0480019163.01.T01;Parent=MsG0480019163.01;Name=MsG0480019163.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|167 |
| Chr4 | exon | 15239538 | 15239731 | 15239538 | ID=MsG0480019163.01.T01:exon:4947;Parent=MsG0480019163.01.T01 |
| Chr4 | exon | 15239145 | 15239454 | 15239145 | ID=MsG0480019163.01.T01:exon:4946;Parent=MsG0480019163.01.T01 |
| Chr4 | CDS | 15239538 | 15239731 | 15239538 | ID=MsG0480019163.01.T01:cds;Parent=MsG0480019163.01.T01 |
| Chr4 | CDS | 15239145 | 15239454 | 15239145 | ID=MsG0480019163.01.T01:cds;Parent=MsG0480019163.01.T01 |
| Gene Sequence |
| Protein sequence |
