Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006310.01.T01 | XP_024632239.1 | 93.168 | 161 | 3 | 1 | 1 | 153 | 1 | 161 | 7.48E-104 | 304 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006310.01.T01 | Q1SKW7 | 93.168 | 161 | 3 | 1 | 1 | 153 | 1 | 161 | 3.57e-104 | 304 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048150.01 | MsG0280006310.01 | 0.804897 | 1.732256e-49 | 9.039033e-47 |
| MsG0080048701.01 | MsG0280006310.01 | 0.845239 | 4.598191e-59 | 7.613805e-56 |
| MsG0080048781.01 | MsG0280006310.01 | 0.829377 | 5.326564e-55 | 5.442352e-52 |
| MsG0180000076.01 | MsG0280006310.01 | 0.810409 | 1.169381e-50 | 7.043208e-48 |
| MsG0180000111.01 | MsG0280006310.01 | 0.827533 | 1.484624e-54 | 1.437147e-51 |
| MsG0180000360.01 | MsG0280006310.01 | 0.814051 | 1.876126e-51 | 1.245691e-48 |
| MsG0180000373.01 | MsG0280006310.01 | 0.848066 | 7.765948e-60 | 1.407913e-56 |
| MsG0180001143.01 | MsG0280006310.01 | 0.808061 | 3.726707e-50 | 2.109756e-47 |
| MsG0180001272.01 | MsG0280006310.01 | 0.810826 | 9.503982e-51 | 5.788616e-48 |
| MsG0180003427.01 | MsG0280006310.01 | 0.808045 | 3.755079e-50 | 2.124932e-47 |
| MsG0180003796.01 | MsG0280006310.01 | 0.813068 | 3.086643e-51 | 1.995430e-48 |
| MsG0180004126.01 | MsG0280006310.01 | 0.806428 | 8.264108e-50 | 4.484468e-47 |
| MsG0180005835.01 | MsG0280006310.01 | 0.856622 | 2.839841e-62 | 6.818999e-59 |
| MsG0280006310.01 | MsG0280006884.01 | 0.803949 | 2.731005e-49 | 1.390610e-46 |
| MsG0280006310.01 | MsG0280007983.01 | 0.849117 | 3.972264e-60 | 7.453559e-57 |
| MsG0280006310.01 | MsG0280008407.01 | 0.824977 | 6.025737e-54 | 5.420916e-51 |
| MsG0280006310.01 | MsG0280010795.01 | 0.822198 | 2.692372e-53 | 2.238069e-50 |
| MsG0280006310.01 | MsG0280010868.01 | 0.802706 | 4.939247e-49 | 2.436127e-46 |
| MsG0280006310.01 | MsG0380012472.01 | 0.824522 | 7.713322e-54 | 6.848773e-51 |
| MsG0280006310.01 | MsG0380014754.01 | 0.839915 | 1.190884e-57 | 1.669057e-54 |
| MsG0280006310.01 | MsG0380015161.01 | 0.824576 | 7.490055e-54 | 6.661302e-51 |
| MsG0280006310.01 | MsG0380015548.01 | 0.806360 | 8.541558e-50 | 4.626825e-47 |
| MsG0280006310.01 | MsG0380017239.01 | 0.816478 | 5.417304e-52 | 3.842664e-49 |
| MsG0280006310.01 | MsG0380017361.01 | 0.807263 | 5.506668e-50 | 3.053221e-47 |
| MsG0280006310.01 | MsG0480018526.01 | 0.814800 | 1.281101e-51 | 8.680459e-49 |
| MsG0280006310.01 | MsG0480019588.01 | 0.859337 | 4.433829e-63 | 1.166989e-59 |
| MsG0280006310.01 | MsG0480019635.01 | 0.837787 | 4.230190e-57 | 5.554826e-54 |
| MsG0280006310.01 | MsG0480020263.01 | 0.848342 | 6.517500e-60 | 1.192332e-56 |
| MsG0280006310.01 | MsG0480021156.01 | 0.827207 | 1.777144e-54 | 1.704200e-51 |
| MsG0280006310.01 | MsG0480022331.01 | 0.808932 | 2.428574e-50 | 1.406666e-47 |
| MsG0280006310.01 | MsG0580024478.01 | 0.833051 | 6.657760e-56 | 7.579715e-53 |
| MsG0280006310.01 | MsG0580024954.01 | 0.812951 | 3.273278e-51 | 2.109447e-48 |
| MsG0280006310.01 | MsG0580025515.01 | 0.835864 | 1.309256e-56 | 1.621544e-53 |
| MsG0280006310.01 | MsG0580028328.01 | 0.809230 | 2.097274e-50 | 1.224596e-47 |
| MsG0280006310.01 | MsG0580028330.01 | 0.805532 | 1.275684e-49 | 6.765166e-47 |
| MsG0280006310.01 | MsG0580029298.01 | 0.822199 | 2.691731e-53 | 2.237599e-50 |
| MsG0280006310.01 | MsG0780041143.01 | 0.811125 | 8.186029e-51 | 5.025486e-48 |
| MsG0280006310.01 | MsG0780041756.01 | 0.822882 | 1.867528e-53 | 1.582964e-50 |
| MsG0280006310.01 | MsG0880042046.01 | 0.826535 | 2.571613e-54 | 2.418325e-51 |
| MsG0280006310.01 | MsG0880042906.01 | 0.810044 | 1.402010e-50 | 8.364553e-48 |
| MsG0280006310.01 | MsG0880042927.01 | 0.825880 | 3.682507e-54 | 3.399250e-51 |
| MsG0280006310.01 | MsG0880047466.01 | 0.805661 | 1.198515e-49 | 6.377330e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006310.01.T01 | MTR_2g005740 | 93.168 | 161 | 3 | 1 | 1 | 153 | 1 | 161 | 9.06e-108 | 304 |
| MsG0280006310.01.T01 | MTR_2g005740 | 92.715 | 151 | 3 | 1 | 11 | 153 | 1 | 151 | 1.06e-99 | 283 |
| MsG0280006310.01.T01 | MTR_2g012780 | 45.714 | 105 | 48 | 2 | 46 | 147 | 53 | 151 | 4.94e-24 | 92.0 |
| MsG0280006310.01.T01 | MTR_4g090440 | 45.833 | 120 | 46 | 5 | 37 | 148 | 25 | 133 | 5.04e-23 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006310.01.T01 | AT1G09812 | 47.059 | 136 | 59 | 3 | 8 | 143 | 3 | 125 | 1.03e-29 | 105 |
| MsG0280006310.01.T01 | AT1G58007 | 49.524 | 105 | 43 | 3 | 41 | 145 | 20 | 114 | 1.40e-23 | 89.4 |
| MsG0280006310.01.T01 | AT1G58007 | 49.524 | 105 | 43 | 3 | 41 | 145 | 20 | 114 | 1.40e-23 | 89.4 |
| MsG0280006310.01.T01 | AT1G58007 | 49.524 | 105 | 43 | 3 | 41 | 145 | 20 | 114 | 1.40e-23 | 89.4 |
| MsG0280006310.01.T01 | AT1G11120 | 46.341 | 123 | 58 | 4 | 31 | 146 | 24 | 145 | 1.86e-22 | 87.8 |
| MsG0280006310.01.T01 | AT1G11120 | 39.865 | 148 | 57 | 5 | 31 | 146 | 24 | 171 | 1.98e-19 | 80.5 |
| MsG0280006310.01.T01 | AT1G58007 | 81.250 | 32 | 6 | 0 | 41 | 72 | 20 | 51 | 1.69e-11 | 56.6 |
| MsG0280006310.01.T01 | AT4G28170 | 37.864 | 103 | 45 | 5 | 32 | 132 | 50 | 135 | 3.01e-11 | 58.2 |
Find 53 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAGAGACTAAGAGATTAT+TGG | 0.226828 | 2:-312760 | MsG0280006310.01.T01:three_prime_UTR |
| GATTTCAATGTTTCTAATAA+TGG | 0.253747 | 2:-313192 | MsG0280006310.01.T01:CDS |
| TTTGAACAAATGTTCAAATA+TGG | 0.259962 | 2:+313169 | None:intergenic |
| GTCCAAGGGAAGAAGCTTAT+TGG | 0.267181 | 2:-312877 | MsG0280006310.01.T01:CDS |
| GTGTGAAGCATTTAAGAAAT+TGG | 0.309557 | 2:-313580 | MsG0280006310.01.T01:intron |
| TAGAAACATTGAAATCAAAA+TGG | 0.315037 | 2:+313199 | None:intergenic |
| AAAGAGACTAAGAGATTATT+GGG | 0.315819 | 2:-312759 | MsG0280006310.01.T01:three_prime_UTR |
| ATCTATGCTTCCAACTTATC+AGG | 0.349676 | 2:-313117 | MsG0280006310.01.T01:CDS |
| TCTATGAGTGCAATATCATT+TGG | 0.374376 | 2:-313236 | MsG0280006310.01.T01:CDS |
| GAAGGTCCATGGAAAAGCTT+TGG | 0.389743 | 2:-313263 | MsG0280006310.01.T01:CDS |
| CATCATTTACTCATTGACTT+TGG | 0.395198 | 2:+312687 | None:intergenic |
| GGCCAATAAGCTTCTTCCCT+TGG | 0.399066 | 2:+312875 | None:intergenic |
| GTCTTATGCATGTGATTTGT+CGG | 0.403359 | 2:-312957 | MsG0280006310.01.T01:CDS |
| ATGTAAGCCATGTTTCCATT+TGG | 0.438502 | 2:-312717 | MsG0280006310.01.T01:three_prime_UTR |
| TGATTTGTCGGTGTTGATGC+CGG | 0.444835 | 2:-312945 | MsG0280006310.01.T01:CDS |
| TGTTAAATACAAAATGTTGT+TGG | 0.457080 | 2:+312846 | None:intergenic |
| CTTGGACAAGGCAGAGGAGC+AGG | 0.461138 | 2:+312893 | None:intergenic |
| ACAAGGCAGAGGAGCAGGTT+GGG | 0.462248 | 2:+312898 | None:intergenic |
| GATTTGTCGGTGTTGATGCC+GGG | 0.464814 | 2:-312944 | MsG0280006310.01.T01:CDS |
| AATTAGAACAAAGACAAAAC+AGG | 0.469285 | 2:-313400 | MsG0280006310.01.T01:five_prime_UTR |
| TCTTCCCTTGGACAAGGCAG+AGG | 0.486050 | 2:+312887 | None:intergenic |
| AAGGTCCATGGAAAAGCTTT+GGG | 0.488752 | 2:-313262 | MsG0280006310.01.T01:CDS |
| TAAGTTGGAAGCATAGATTC+TGG | 0.501581 | 2:+313122 | None:intergenic |
| CTGCTCCTCTGCCTTGTCCA+AGG | 0.512022 | 2:-312892 | MsG0280006310.01.T01:CDS |
| CCTCCTGTCTGTGAATGTGA+TGG | 0.513542 | 2:+313299 | None:intergenic |
| GACTTTGGAGAACAGCCAAA+TGG | 0.513956 | 2:+312702 | None:intergenic |
| ACAAAATGTTGTTGGTGAGA+AGG | 0.517710 | 2:+312854 | None:intergenic |
| TTCTGCCTCTTGAGACAGCA+AGG | 0.520372 | 2:-313774 | None:intergenic |
| TGTGAGATCAGAATGAAGTT+TGG | 0.528238 | 2:+313553 | None:intergenic |
| TGCTCCTCTGCCTTGTCCAA+GGG | 0.530867 | 2:-312891 | MsG0280006310.01.T01:CDS |
| GACAAGGCAGAGGAGCAGGT+TGG | 0.540635 | 2:+312897 | None:intergenic |
| GTATACACGGCTTCAAACGC+AGG | 0.541704 | 2:-313323 | MsG0280006310.01.T01:CDS |
| TAAGTAGGATACTGCTGCCC+CGG | 0.546135 | 2:+312926 | None:intergenic |
| GAGTTGATGAGGAAGGTCCA+TGG | 0.553113 | 2:-313274 | MsG0280006310.01.T01:CDS |
| CATTGAAATCAAAATGGCTG+TGG | 0.558224 | 2:+313205 | None:intergenic |
| GAGTGGTGTTCCTGATAAGT+TGG | 0.558569 | 2:+313107 | None:intergenic |
| GACAGGAGGAGGAGTTGATG+AGG | 0.568497 | 2:-313285 | MsG0280006310.01.T01:CDS |
| GCAGGTTGGGCAATGTAAGT+AGG | 0.571068 | 2:+312911 | None:intergenic |
| TAAGTTTGCTTCATCTGACA+AGG | 0.587342 | 2:-313728 | MsG0280006310.01.T01:intron |
| GGTCCATCACATTCACAGAC+AGG | 0.587985 | 2:-313302 | MsG0280006310.01.T01:CDS |
| TCACATTCACAGACAGGAGG+AGG | 0.591725 | 2:-313296 | MsG0280006310.01.T01:CDS |
| GGAGGAGGAGTTGATGAGGA+AGG | 0.605051 | 2:-313281 | MsG0280006310.01.T01:CDS |
| TAAGCTTCTTCCCTTGGACA+AGG | 0.606151 | 2:+312881 | None:intergenic |
| TCACTACCAACCACAAAACA+AGG | 0.611869 | 2:-313086 | MsG0280006310.01.T01:CDS |
| AGTCAATGAGTAAATGATGA+CGG | 0.613545 | 2:-312683 | MsG0280006310.01.T01:three_prime_UTR |
| GTGGAAGAAAAGTGTTGTGT+GGG | 0.618638 | 2:+313146 | None:intergenic |
| AGAACAGCCAAATGGAAACA+TGG | 0.620971 | 2:+312710 | None:intergenic |
| ACAGTGAAAGATCAAAGATG+TGG | 0.629582 | 2:-313349 | MsG0280006310.01.T01:CDS |
| CGTGGAAGAAAAGTGTTGTG+TGG | 0.639502 | 2:+313145 | None:intergenic |
| ATTTGTCGGTGTTGATGCCG+GGG | 0.648111 | 2:-312943 | MsG0280006310.01.T01:CDS |
| AAAGATGTGGAACGTATACA+CGG | 0.657288 | 2:-313336 | MsG0280006310.01.T01:CDS |
| TGGAAGCATAGATTCTGGCG+TGG | 0.678051 | 2:+313127 | None:intergenic |
| CCATCACATTCACAGACAGG+AGG | 0.694212 | 2:-313299 | MsG0280006310.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAATAAAAAAGAATAA+TGG | + | Chr2:312692-312711 | None:intergenic | 10.0% |
| !! | AAGAAATAAAAAAGAATAAT+GGG | + | Chr2:312691-312710 | None:intergenic | 10.0% |
| !! | ATATATTCTCAAAACATTTA+AGG | - | Chr2:312945-312964 | MsG0280006310.01.T01:CDS | 15.0% |
| !! | CATTATACATATGTTAAAAA+AGG | + | Chr2:313428-313447 | None:intergenic | 15.0% |
| !! | GTATGTTTATTTATTATTAC+AGG | - | Chr2:313449-313468 | MsG0280006310.01.T01:intron | 15.0% |
| !!! | CATCATACTTTTTTTTTTAT+TGG | - | Chr2:312799-312818 | MsG0280006310.01.T01:three_prime_UTR | 15.0% |
| !! | TAGAAACATTGAAATCAAAA+TGG | + | Chr2:313243-313262 | None:intergenic | 20.0% |
| !! | TGTTAAATACAAAATGTTGT+TGG | + | Chr2:313596-313615 | None:intergenic | 20.0% |
| !! | TTTGAACAAATGTTCAAATA+TGG | + | Chr2:313273-313292 | None:intergenic | 20.0% |
| !!! | ATCGATTAATAACATTTTGT+AGG | + | Chr2:313642-313661 | None:intergenic | 20.0% |
| !!! | ATTTTGTATTTAACAACTAG+TGG | - | Chr2:313601-313620 | MsG0280006310.01.T01:intron | 20.0% |
| !!! | GATTTCAATGTTTCTAATAA+TGG | - | Chr2:313247-313266 | MsG0280006310.01.T01:CDS | 20.0% |
| ! | AAAGAGACTAAGAGATTATT+GGG | - | Chr2:313680-313699 | MsG0280006310.01.T01:intron | 25.0% |
| ! | AATTAGAACAAAGACAAAAC+AGG | - | Chr2:313039-313058 | MsG0280006310.01.T01:intron | 25.0% |
| ! | TAAAGAGACTAAGAGATTAT+TGG | - | Chr2:313679-313698 | MsG0280006310.01.T01:intron | 25.0% |
| AAGAATCAGACAGAATAACT+AGG | + | Chr2:312993-313012 | None:intergenic | 30.0% | |
| AAGGAAAAAACACATGAAAC+AGG | + | Chr2:313409-313428 | None:intergenic | 30.0% | |
| ACATGAAACAGGTAGTAAAA+GGG | + | Chr2:313398-313417 | None:intergenic | 30.0% | |
| AGTCAATGAGTAAATGATGA+CGG | - | Chr2:313756-313775 | MsG0280006310.01.T01:five_prime_UTR | 30.0% | |
| ATTAAGTTAAGCATCAGTTG+AGG | - | Chr2:312757-312776 | MsG0280006310.01.T01:three_prime_UTR | 30.0% | |
| TCTATGAGTGCAATATCATT+TGG | - | Chr2:313203-313222 | MsG0280006310.01.T01:CDS | 30.0% | |
| TTATAAAGCTTAGCTAACTG+TGG | - | Chr2:312822-312841 | MsG0280006310.01.T01:exon | 30.0% | |
| ! | GTGTGAAGCATTTAAGAAAT+TGG | - | Chr2:312859-312878 | MsG0280006310.01.T01:CDS | 30.0% |
| !! | CATCATTTACTCATTGACTT+TGG | + | Chr2:313755-313774 | None:intergenic | 30.0% |
| AAAGATGTGGAACGTATACA+CGG | - | Chr2:313103-313122 | MsG0280006310.01.T01:CDS | 35.0% | |
| ACAGTGAAAGATCAAAGATG+TGG | - | Chr2:313090-313109 | MsG0280006310.01.T01:CDS | 35.0% | |
| ATCTATGCTTCCAACTTATC+AGG | - | Chr2:313322-313341 | MsG0280006310.01.T01:CDS | 35.0% | |
| ATGTAAGCCATGTTTCCATT+TGG | - | Chr2:313722-313741 | MsG0280006310.01.T01:intron | 35.0% | |
| CACATGAAACAGGTAGTAAA+AGG | + | Chr2:313399-313418 | None:intergenic | 35.0% | |
| CATTGAAATCAAAATGGCTG+TGG | + | Chr2:313237-313256 | None:intergenic | 35.0% | |
| TGTGAGATCAGAATGAAGTT+TGG | + | Chr2:312889-312908 | None:intergenic | 35.0% | |
| ! | ACAAAATGTTGTTGGTGAGA+AGG | + | Chr2:313588-313607 | None:intergenic | 35.0% |
| ! | GTCTTATGCATGTGATTTGT+CGG | - | Chr2:313482-313501 | MsG0280006310.01.T01:intron | 35.0% |
| ! | TAAGTTGGAAGCATAGATTC+TGG | + | Chr2:313320-313339 | None:intergenic | 35.0% |
| ! | TAAGTTTGCTTCATCTGACA+AGG | - | Chr2:312711-312730 | MsG0280006310.01.T01:three_prime_UTR | 35.0% |
| !!! | TTGTGCATTTCCTTGTTTTG+TGG | + | Chr2:313366-313385 | None:intergenic | 35.0% |
| AAGGTCCATGGAAAAGCTTT+GGG | - | Chr2:313177-313196 | MsG0280006310.01.T01:CDS | 40.0% | |
| AGAACAGCCAAATGGAAACA+TGG | + | Chr2:313732-313751 | None:intergenic | 40.0% | |
| TCACTACCAACCACAAAACA+AGG | - | Chr2:313353-313372 | MsG0280006310.01.T01:CDS | 40.0% | |
| ! | CATTTAAGGCTCGTCTAACT+TGG | - | Chr2:312959-312978 | MsG0280006310.01.T01:CDS | 40.0% |
| !! | GTGGAAGAAAAGTGTTGTGT+GGG | + | Chr2:313296-313315 | None:intergenic | 40.0% |
| !!! | GCATTTCCTTGTTTTGTGGT+TGG | + | Chr2:313362-313381 | None:intergenic | 40.0% |
| GAAGGTCCATGGAAAAGCTT+TGG | - | Chr2:313176-313195 | MsG0280006310.01.T01:CDS | 45.0% | |
| GAGTGGTGTTCCTGATAAGT+TGG | + | Chr2:313335-313354 | None:intergenic | 45.0% | |
| GTCCAAGGGAAGAAGCTTAT+TGG | - | Chr2:313562-313581 | MsG0280006310.01.T01:five_prime_UTR | 45.0% | |
| TAAGCTTCTTCCCTTGGACA+AGG | + | Chr2:313561-313580 | None:intergenic | 45.0% | |
| ! | GAAGTCCCAAAGCTTTTCCA+TGG | + | Chr2:313185-313204 | None:intergenic | 45.0% |
| ! | GACTTTGGAGAACAGCCAAA+TGG | + | Chr2:313740-313759 | None:intergenic | 45.0% |
| !! | CGTGGAAGAAAAGTGTTGTG+TGG | + | Chr2:313297-313316 | None:intergenic | 45.0% |
| !! | TGATTTGTCGGTGTTGATGC+CGG | - | Chr2:313494-313513 | MsG0280006310.01.T01:intron | 45.0% |
| !!! | GTTTTGTGGTTGGTAGTGAG+TGG | + | Chr2:313352-313371 | None:intergenic | 45.0% |
| CCATCACATTCACAGACAGG+AGG | - | Chr2:313140-313159 | MsG0280006310.01.T01:CDS | 50.0% | |
| CCTCCTGTCTGTGAATGTGA+TGG | + | Chr2:313143-313162 | None:intergenic | 50.0% | |
| GGCCAATAAGCTTCTTCCCT+TGG | + | Chr2:313567-313586 | None:intergenic | 50.0% | |
| GGTCCATCACATTCACAGAC+AGG | - | Chr2:313137-313156 | MsG0280006310.01.T01:CDS | 50.0% | |
| GTATACACGGCTTCAAACGC+AGG | - | Chr2:313116-313135 | MsG0280006310.01.T01:CDS | 50.0% | |
| TAAGTAGGATACTGCTGCCC+CGG | + | Chr2:313516-313535 | None:intergenic | 50.0% | |
| TCACATTCACAGACAGGAGG+AGG | - | Chr2:313143-313162 | MsG0280006310.01.T01:CDS | 50.0% | |
| ! | GCAGGTTGGGCAATGTAAGT+AGG | + | Chr2:313531-313550 | None:intergenic | 50.0% |
| ! | TGGAAGCATAGATTCTGGCG+TGG | + | Chr2:313315-313334 | None:intergenic | 50.0% |
| !! | ATTTGTCGGTGTTGATGCCG+GGG | - | Chr2:313496-313515 | MsG0280006310.01.T01:intron | 50.0% |
| !! | GAGTTGATGAGGAAGGTCCA+TGG | - | Chr2:313165-313184 | MsG0280006310.01.T01:CDS | 50.0% |
| !! | GATTTGTCGGTGTTGATGCC+GGG | - | Chr2:313495-313514 | MsG0280006310.01.T01:intron | 50.0% |
| ACAAGGCAGAGGAGCAGGTT+GGG | + | Chr2:313544-313563 | None:intergenic | 55.0% | |
| TCTTCCCTTGGACAAGGCAG+AGG | + | Chr2:313555-313574 | None:intergenic | 55.0% | |
| TGCTCCTCTGCCTTGTCCAA+GGG | - | Chr2:313548-313567 | MsG0280006310.01.T01:five_prime_UTR | 55.0% | |
| !! | GACAGGAGGAGGAGTTGATG+AGG | - | Chr2:313154-313173 | MsG0280006310.01.T01:CDS | 55.0% |
| !! | GGAGGAGGAGTTGATGAGGA+AGG | - | Chr2:313158-313177 | MsG0280006310.01.T01:CDS | 55.0% |
| CTGCTCCTCTGCCTTGTCCA+AGG | - | Chr2:313547-313566 | MsG0280006310.01.T01:five_prime_UTR | 60.0% | |
| CTTGGACAAGGCAGAGGAGC+AGG | + | Chr2:313549-313568 | None:intergenic | 60.0% | |
| GACAAGGCAGAGGAGCAGGT+TGG | + | Chr2:313545-313564 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 312676 | 313785 | 312676 | ID=MsG0280006310.01;Name=MsG0280006310.01 |
| Chr2 | mRNA | 312676 | 313785 | 312676 | ID=MsG0280006310.01.T01;Parent=MsG0280006310.01;Name=MsG0280006310.01.T01;_AED=0.41;_eAED=0.41;_QI=160|1|1|1|0.33|0.25|4|165|153 |
| Chr2 | exon | 312676 | 312990 | 312676 | ID=MsG0280006310.01.T01:exon:590;Parent=MsG0280006310.01.T01 |
| Chr2 | exon | 313073 | 313422 | 313073 | ID=MsG0280006310.01.T01:exon:589;Parent=MsG0280006310.01.T01 |
| Chr2 | exon | 313530 | 313594 | 313530 | ID=MsG0280006310.01.T01:exon:588;Parent=MsG0280006310.01.T01 |
| Chr2 | exon | 313729 | 313785 | 313729 | ID=MsG0280006310.01.T01:exon:587;Parent=MsG0280006310.01.T01 |
| Chr2 | five_prime_UTR | 313729 | 313785 | 313729 | ID=MsG0280006310.01.T01:five_prime_utr;Parent=MsG0280006310.01.T01 |
| Chr2 | five_prime_UTR | 313530 | 313594 | 313530 | ID=MsG0280006310.01.T01:five_prime_utr;Parent=MsG0280006310.01.T01 |
| Chr2 | five_prime_UTR | 313385 | 313422 | 313385 | ID=MsG0280006310.01.T01:five_prime_utr;Parent=MsG0280006310.01.T01 |
| Chr2 | CDS | 313073 | 313384 | 313073 | ID=MsG0280006310.01.T01:cds;Parent=MsG0280006310.01.T01 |
| Chr2 | CDS | 312841 | 312990 | 312841 | ID=MsG0280006310.01.T01:cds;Parent=MsG0280006310.01.T01 |
| Chr2 | three_prime_UTR | 312676 | 312840 | 312676 | ID=MsG0280006310.01.T01:three_prime_utr;Parent=MsG0280006310.01.T01 |
| Gene Sequence |
| Protein sequence |
