AlfalfaGEDB | MsG0380015161.01

M. sativa cultivar ZhongmuNo.1 / MsG0380015161.01

KEGG: -
GO: GO:0003677 GO:0005634 GO:0006355 GO:0009725
PFAM: PF02362 PF06507

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015161.01.T01	KAG4989558.1	60.777	849	98	18	1	621	25	866	0	899

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015161.01.T01	Q9FGV1	47.66	812	198	19	1	596	1	801	0	615

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015161.01.T01	A0A445I518	60.517	851	99	18	1	621	1	844	0.0	893

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TFs/TRs:

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Gene ID	Type	Classification
MsG0380015161.01.T01	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048701.01	MsG0380015161.01	0.819976	8.749982e-53	6.835587e-50
MsG0180000076.01	MsG0380015161.01	0.820371	7.105301e-53	5.611800e-50
MsG0180000111.01	MsG0380015161.01	0.839470	1.554640e-57	2.149027e-54
MsG0180000360.01	MsG0380015161.01	0.809837	1.553096e-50	9.215855e-48
MsG0180000373.01	MsG0380015161.01	0.861159	1.247699e-63	3.496388e-60
MsG0180000601.01	MsG0380015161.01	0.807376	5.209629e-50	2.897000e-47
MsG0180002397.01	MsG0380015161.01	0.801418	9.090052e-49	4.338859e-46
MsG0180002583.01	MsG0380015161.01	0.835517	1.602519e-56	1.964244e-53
MsG0180003360.01	MsG0380015161.01	0.802321	5.930296e-49	2.896505e-46
MsG0180003427.01	MsG0380015161.01	0.823266	1.519152e-53	1.301676e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015161.01.T01	MTR_5g076270	58.087	847	123	17	1	621	1	841	0.0	856
MsG0380015161.01.T01	MTR_3g064050	76.497	451	16	3	21	381	62	512	0.0	671
MsG0380015161.01.T01	MTR_3g064050	83.275	287	16	4	364	621	566	849	1.15e-151	459
MsG0380015161.01.T01	MTR_3g064050	86.081	273	7	3	378	621	342	612	1.67e-154	458
MsG0380015161.01.T01	MTR_3g064050	61.818	275	15	3	197	381	1	275	2.28e-93	300
MsG0380015161.01.T01	MTR_2g018690	59.559	408	64	9	11	322	47	449	6.30e-147	448
MsG0380015161.01.T01	MTR_2g018690	35.747	221	89	7	452	621	690	908	6.62e-21	98.2
MsG0380015161.01.T01	MTR_8g079492	58.578	408	67	10	11	322	47	448	1.15e-141	434
MsG0380015161.01.T01	MTR_8g079492	33.441	311	129	12	380	621	613	914	1.24e-25	112
MsG0380015161.01.T01	MTR_8g079492	58.435	409	67	10	11	322	47	449	1.54e-141	434

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015161.01.T01	AT5G37020	47.660	812	198	19	1	596	1	801	0.0	615
MsG0380015161.01.T01	AT5G37020	46.727	779	193	19	1	563	1	773	0.0	569
MsG0380015161.01.T01	AT5G37020	46.862	717	191	17	59	596	1	706	8.16e-180	526
MsG0380015161.01.T01	AT1G30330	57.710	428	87	8	11	345	47	473	1.29e-145	446
MsG0380015161.01.T01	AT1G30330	40.415	193	72	6	439	590	699	889	3.19e-27	118
MsG0380015161.01.T01	AT1G30330	57.710	428	87	8	11	345	49	475	1.53e-145	445
MsG0380015161.01.T01	AT1G30330	40.415	193	72	6	439	590	701	891	3.31e-27	117
MsG0380015161.01.T01	AT1G30330	57.710	428	87	8	11	345	49	475	1.53e-145	445
MsG0380015161.01.T01	AT1G30330	40.415	193	72	6	439	590	701	891	3.31e-27	117
MsG0380015161.01.T01	AT1G19850	54.795	292	81	5	11	253	78	367	8.59e-98	319

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Find 192 sgRNAs with CRISPR-Local

Find 533 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGCACCTTCTTACAAC+AGG	0.482866	3:-65998346	MsG0380015161.01.T01:CDS
AAAGTTTATGGCTTTAAGTT+AGG	0.246128	3:-66001186	MsG0380015161.01.T01:five_prime_UTR
AACAGTTACCACAACAATCA+TGG	0.472142	3:-65995179	MsG0380015161.01.T01:CDS
AACATCAGGGTTGGGTCAGC+AGG	0.365210	3:-66001064	MsG0380015161.01.T01:CDS
AAGAGATTGCCAGTTCCTTC+AGG	0.401444	3:+65995246	None:intergenic
AAGCAACAAATGCTCTAATG+TGG	0.605531	3:-65995824	MsG0380015161.01.T01:CDS
AAGCTTTCAACATCAGGGTT+GGG	0.474639	3:-66001072	MsG0380015161.01.T01:CDS
AAGGTGCTGGTATGTTGCCC+TGG	0.473085	3:-65995755	MsG0380015161.01.T01:CDS
AAGTTTATGGCTTTAAGTTA+GGG	0.435522	3:-66001185	MsG0380015161.01.T01:five_prime_UTR
AATAACTGGCATAAGTGATC+TGG	0.459910	3:-65997494	MsG0380015161.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACATGGGAAGATATCT+GGG	+	Chr3:65997978-65997997	None:intergenic	30.0%
AAAAATGGCATTTCTGATCT+TGG	-	Chr3:65995692-65995711	MsG0380015161.01.T01:CDS	30.0%
AAAAGTCAAGCCCAAAAATA+TGG	+	Chr3:65999058-65999077	None:intergenic	30.0%
AACTGTACCATATCTCTAAA+TGG	-	Chr3:65998360-65998379	MsG0380015161.01.T01:intron	30.0%
AATATATAGAACAGGCAAAG+TGG	+	Chr3:65998304-65998323	None:intergenic	30.0%
ACAAAATGAAAGTGAGACAT+GGG	+	Chr3:65997736-65997755	None:intergenic	30.0%
ACAACTTGATTAAGCACATA+TGG	+	Chr3:65999287-65999306	None:intergenic	30.0%
ACATTTCTTCCTATGGAATT+GGG	-	Chr3:65995027-65995046	MsG0380015161.01.T01:CDS	30.0%
ACTTTGATTGGTATTGTTGT+TGG	-	Chr3:65996239-65996258	MsG0380015161.01.T01:intron	30.0%
AGTTCTCCAAATATAAAGAG+AGG	+	Chr3:65994963-65994982	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	65993957	66001329	65993957	ID=MsG0380015161.01;Name=MsG0380015161.01
Chr3	mRNA	65993957	66001329	65993957	ID=MsG0380015161.01.T01;Parent=MsG0380015161.01;Name=MsG0380015161.01.T01;_AED=0.33;_eAED=0.33;_QI=232\|0.53\|0.57\|1\|1\|1\|14\|333\|621
Chr3	exon	65993957	65994467	65993957	ID=MsG0380015161.01.T01:exon:22938;Parent=MsG0380015161.01.T01
Chr3	exon	65994579	65994641	65994579	ID=MsG0380015161.01.T01:exon:22937;Parent=MsG0380015161.01.T01
Chr3	exon	65994724	65994767	65994724	ID=MsG0380015161.01.T01:exon:22936;Parent=MsG0380015161.01.T01
Chr3	exon	65994846	65995302	65994846	ID=MsG0380015161.01.T01:exon:22935;Parent=MsG0380015161.01.T01
Chr3	exon	65995507	65995871	65995507	ID=MsG0380015161.01.T01:exon:22934;Parent=MsG0380015161.01.T01
Chr3	exon	65997453	65997528	65997453	ID=MsG0380015161.01.T01:exon:22933;Parent=MsG0380015161.01.T01
Chr3	exon	65997891	65997957	65997891	ID=MsG0380015161.01.T01:exon:22932;Parent=MsG0380015161.01.T01
Chr3	exon	65998104	65998189	65998104	ID=MsG0380015161.01.T01:exon:22931;Parent=MsG0380015161.01.T01
Chr3	exon	65998286	65998376	65998286	ID=MsG0380015161.01.T01:exon:22930;Parent=MsG0380015161.01.T01
Chr3	exon	65999958	66000042	65999958	ID=MsG0380015161.01.T01:exon:22929;Parent=MsG0380015161.01.T01
Chr3	exon	66000119	66000274	66000119	ID=MsG0380015161.01.T01:exon:22928;Parent=MsG0380015161.01.T01
Chr3	exon	66000370	66000426	66000370	ID=MsG0380015161.01.T01:exon:22927;Parent=MsG0380015161.01.T01
Chr3	exon	66000541	66000638	66000541	ID=MsG0380015161.01.T01:exon:22926;Parent=MsG0380015161.01.T01
Chr3	exon	66001055	66001329	66001055	ID=MsG0380015161.01.T01:exon:22925;Parent=MsG0380015161.01.T01
Chr3	five_prime_UTR	66001098	66001329	66001098	ID=MsG0380015161.01.T01:five_prime_utr;Parent=MsG0380015161.01.T01
Chr3	CDS	66001055	66001097	66001055	ID=MsG0380015161.01.T01:cds;Parent=MsG0380015161.01.T01
Chr3	CDS	66000541	66000638	66000541	ID=MsG0380015161.01.T01:cds;Parent=MsG0380015161.01.T01
Chr3	CDS	66000370	66000426	66000370	ID=MsG0380015161.01.T01:cds;Parent=MsG0380015161.01.T01
Chr3	CDS	66000119	66000274	66000119	ID=MsG0380015161.01.T01:cds;Parent=MsG0380015161.01.T01
Chr3	CDS	65999958	66000042	65999958	ID=MsG0380015161.01.T01:cds;Parent=MsG0380015161.01.T01
Chr3	CDS	65998286	65998376	65998286	ID=MsG0380015161.01.T01:cds;Parent=MsG0380015161.01.T01
Chr3	CDS	65998104	65998189	65998104	ID=MsG0380015161.01.T01:cds;Parent=MsG0380015161.01.T01
Chr3	CDS	65997891	65997957	65997891	ID=MsG0380015161.01.T01:cds;Parent=MsG0380015161.01.T01
Chr3	CDS	65997453	65997528	65997453	ID=MsG0380015161.01.T01:cds;Parent=MsG0380015161.01.T01
Chr3	CDS	65995507	65995871	65995507	ID=MsG0380015161.01.T01:cds;Parent=MsG0380015161.01.T01
Chr3	CDS	65994846	65995302	65994846	ID=MsG0380015161.01.T01:cds;Parent=MsG0380015161.01.T01
Chr3	CDS	65994724	65994767	65994724	ID=MsG0380015161.01.T01:cds;Parent=MsG0380015161.01.T01
Chr3	CDS	65994579	65994641	65994579	ID=MsG0380015161.01.T01:cds;Parent=MsG0380015161.01.T01
Chr3	CDS	65994290	65994467	65994290	ID=MsG0380015161.01.T01:cds;Parent=MsG0380015161.01.T01
Chr3	three_prime_UTR	65993957	65994289	65993957	ID=MsG0380015161.01.T01:three_prime_utr;Parent=MsG0380015161.01.T01

Gene Sequence

>MsG0380015161.01.T01

ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGTGTCTGCTACAACTACCGAGAAATCGATGGGCAAATACCAAATTACCCTAGTTTACCACCTCAGTTGGTTTGCCAACTTCATAATGTTACAATGCATGCAGATGTTGAAACGGATGAAGTGTATGCTCAAATGACACTACAGCCGTTGACTCCGGAAGAGCAGAAGGATACATTTCTTCCTATGGAATTGGGCATTCCAAGTAAGCAGCCTTCGAACTATTTTTGCAAGACTTTGACAGCCAGTGACACCAGCACACATGGAGGATTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCGCTGGATTTCTCACAGCAACCACCAGCACAAGAACTAATTGCTAGGGATCTCCATGATGTTGAATGGAAGTTTCGACATATTTTTCGGGGCCAGCCAAAACGGCACCTTCTTACAACAGGCTGGAGCATATTTGTTAGTGCTAAGAGACTTGTAGCTGGAGATTCCGTGCTTTTCATATGGAATGAGAAGAATCGGCTTCTTTTGGGAATACGTCGAGCCAATCGACCGCAAACTGTAATGCCATCATCTGTTCTGTCCAGTGACATTTACATCATGGGCAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATATCAAAGCCGTGTACATGGGCACAATAACTGGCATAAGTGATCTGGATGCTGTTCGGTGGCCGAATTCTCATTGGCGCTCTGTCAAGGATCTTGTTACAGATGGTAGAGACGAAGCAACAAATGCTCTAATGTGGATGAGAGGTGGACCTGCAGACCAAGGTCTCAATTCCCTAAACTTTCAAGGTGCTGGTATGTTGCCCTGGATGCAGCAGAGACTCGATCCAACTTTACTCGGGAATGATCAGAATCAACAATACCAAGCCATGTTGGCAGCAGCTGGAATGCAGAACATGGGTGGTGGATATCTCATGAGGCCACAAATGGTGAATTTTCAACAACAGCCTACCCATTACCTTCAATCAGGAAACAATAATTCACCTTTGCAACTTCACCAGCCACAATCAATTCAACAATCGGTGTCCTCTAATATGATGCAGCCACAACAAACCAATTCCCTCGGGACAAACATGCTTGGATCGCTTTGCCCTGAAGGAACTGGCAATCTCTTGAATCTATCGAGTCTAACGAGAAGTGGTCAGTCATTGATGAATGAACAGTTACCACAACAATCATGGACTCCAAAGTATGGAAATATGCAGGTCAATGCCTTTGGCAGCGCAATGTCACATGCACAATATTCTGGAAAAGATTCAGCTATAGTGCCTCCACATTGTGATTCAGATGCCCAAAATCATACTCTCTCGGGTGTCAATATCGATTCATCTGGTCTTCTACTCCCCACCACTGTCCCGAATTACACTGCTTCAACAACTGACACTGGTGCATCAACACAATTAGGGGAGTCTGGATTCCAGGGTTCTCTATATGCCTGCATGCAAGATTCATCTTCATTTTTGCAAAATGCAGAGCAAATCGACCCACAAAACCAGAACCCAACATTTGTAAAGGTTTACAAATCGGGATCGGTTGGGCGTTCACTTGACATCTCTCGGCTGGCAGCTTGTGTTCGTCGACCGGAGAATGATGTGCTTCTCCTTGGCGACGATCCGTGGGAATCATTCGTGAATAACGTTTGGTATATCAAAATACTTTCACCGGAAGATATTCAGAAGATGGGAGATCAAGCGGTAGAAATGCATGGACTAGGCTCAGGACAAAGGCTTAATGGCACTGGTGAATCTCACCACATTGTTTCTGGACAACCACCATCAATTGGCTCACTTGATTACTGA

Protein sequence

>MsG0380015161.01.T01

MKLSTSGLGQQGHEGVCYNYREIDGQIPNYPSLPPQLVCQLHNVTMHADVETDEVYAQMTLQPLTPEEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNRLLLGIRRANRPQTVMPSSVLSSDIYIMGRASPSEFVIPLSKYIKAVYMGTITGISDLDAVRWPNSHWRSVKDLVTDGRDEATNALMWMRGGPADQGLNSLNFQGAGMLPWMQQRLDPTLLGNDQNQQYQAMLAAAGMQNMGGGYLMRPQMVNFQQQPTHYLQSGNNNSPLQLHQPQSIQQSVSSNMMQPQQTNSLGTNMLGSLCPEGTGNLLNLSSLTRSGQSLMNEQLPQQSWTPKYGNMQVNAFGSAMSHAQYSGKDSAIVPPHCDSDAQNHTLSGVNIDSSGLLLPTTVPNYTASTTDTGASTQLGESGFQGSLYACMQDSSSFLQNAEQIDPQNQNPTFVKVYKSGSVGRSLDISRLAACVRRPENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGDQAVEMHGLGSGQRLNGTGESHHIVSGQPPSIGSLDY*