AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009343.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009343.01.T01 MTR_2g061450 90.345 435 39 2 14 448 1 432 0.0 791
MsG0280009343.01.T01 MTR_2g060620 91.589 107 7 1 318 424 61 165 3.32e-61 202
MsG0280009343.01.T01 MTR_5g046240 79.245 53 10 1 560 612 833 884 1.00e-15 81.6
MsG0280009343.01.T01 MTR_2g060600 97.143 35 1 0 578 612 75 109 8.70e-15 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009343.01.T01 AT1G74120 49.321 442 220 2 6 447 7 444 1.42e-147 434
MsG0280009343.01.T01 AT5G54180 29.279 222 151 5 153 370 253 472 4.42e-15 78.6
MsG0280009343.01.T01 AT1G62010 26.562 192 122 5 211 399 213 388 7.44e-11 65.1

Find 141 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCTCAATTTCTACTTAAT+TGG 0.095296 2:-50581846 MsG0280009343.01.T01:CDS
GAAAGCTTGGATATGAATTT+TGG 0.127070 2:+50581811 None:intergenic
GCTTCCACCTGTTGGTTAAA+TGG 0.165430 2:-50578159 MsG0280009343.01.T01:CDS
TAGATTGTTTCCTAGGGTTT+TGG 0.199228 2:-50581548 MsG0280009343.01.T01:CDS
AAATTTCAAGTGGGTTTAAA+TGG 0.215029 2:+50581737 None:intergenic
TGTTAGGGATCCAAGGGTTT+TGG 0.241406 2:-50581440 MsG0280009343.01.T01:CDS
AATCTTGAAGAAGTGAAATT+AGG 0.248181 2:+50581884 None:intergenic
ATTCATGAGTTGAGGAGTTT+GGG 0.255104 2:-50581493 MsG0280009343.01.T01:CDS
ATTTCTACTTAATTGGGAAT+TGG 0.257535 2:-50581839 MsG0280009343.01.T01:CDS
ACAGTAGAGTTGAGGCCATT+AGG 0.295558 2:-50580452 MsG0280009343.01.T01:CDS
CAACACCATATTTCATCCTT+TGG 0.306291 2:+50581173 None:intergenic
AGGTCAGGGCGGAGGTTGTT+AGG 0.309694 2:-50581456 MsG0280009343.01.T01:CDS
TTAATCCAAAGGATGAAATA+TGG 0.315058 2:-50581178 MsG0280009343.01.T01:CDS
TTGAAAGGAAAAGGTGCAAT+TGG 0.315697 2:-50581070 MsG0280009343.01.T01:CDS
GATTCATGAGTTGAGGAGTT+TGG 0.321130 2:-50581494 MsG0280009343.01.T01:CDS
CAGTAGAGTTGAGGCCATTA+GGG 0.323647 2:-50580451 MsG0280009343.01.T01:CDS
ACCTCAATTTCTACTTAATT+GGG 0.327209 2:-50581845 MsG0280009343.01.T01:CDS
TTTCTACTTAATTGGGAATT+GGG 0.329864 2:-50581838 MsG0280009343.01.T01:CDS
TTTCCCATTGCAGTTGTAAT+GGG 0.333921 2:-50581646 MsG0280009343.01.T01:CDS
GAAGAACATGAAGGCTTTCA+TGG 0.341403 2:-50580855 MsG0280009343.01.T01:CDS
AACATGCGAATTCACAGATT+TGG 0.348169 2:+50580580 None:intergenic
AAGTGGTTCTTACAAGAATA+AGG 0.352405 2:+50582124 None:intergenic
GGGTTGTTAGATTGTTTCCT+AGG 0.353615 2:-50581555 MsG0280009343.01.T01:CDS
CATGAAGTTCCTTCATACTT+AGG 0.364333 2:-50581142 MsG0280009343.01.T01:CDS
GTTGGAGCGGAAAACTTGTT+TGG 0.369327 2:-50578851 MsG0280009343.01.T01:CDS
GAAGGAAAAGAGGGTTGTTA+AGG 0.369880 2:+50581924 None:intergenic
TTCCTTTGTCCATGGACAAC+TGG 0.369953 2:-50578777 MsG0280009343.01.T01:CDS
ATGGACAACTGGCTAAAGTT+AGG 0.370136 2:-50578766 MsG0280009343.01.T01:CDS
AGTTACATCATTCATTAGTT+GGG 0.376798 2:-50580428 MsG0280009343.01.T01:CDS
GCAGTAGCTCATGGAATGTT+TGG 0.379837 2:-50580476 MsG0280009343.01.T01:CDS
GAGTTACATCATTCATTAGT+TGG 0.391698 2:-50580429 MsG0280009343.01.T01:CDS
AAGGTTGATTGCTTACGGTT+TGG 0.397737 2:-50581227 MsG0280009343.01.T01:CDS
GATCCGTAGGGATGCTTTGA+AGG 0.398149 2:-50581266 MsG0280009343.01.T01:CDS
TGTTTGGAGTTTATAAAGAA+TGG 0.398840 2:-50578835 MsG0280009343.01.T01:CDS
GGTGCAATTGGGTTTGAAGT+TGG 0.399622 2:-50581058 MsG0280009343.01.T01:CDS
TTCCTAAGGATGAAATTGAT+AGG 0.405215 2:-50581576 MsG0280009343.01.T01:CDS
ACAAGTTGGCGATCATCAAC+GGG 0.415975 2:+50581779 None:intergenic
ATTTCCCATTGCAGTTGTAA+TGG 0.419491 2:-50581647 MsG0280009343.01.T01:CDS
AAACCACTTCCTCTTCAATT+CGG 0.423347 2:-50581968 MsG0280009343.01.T01:CDS
GTAAGCATCCAGCTGGACTT+TGG 0.424175 2:-50580922 MsG0280009343.01.T01:CDS
TGAAAGGAAAAGGTGCAATT+GGG 0.424464 2:-50581069 MsG0280009343.01.T01:CDS
GCTAATCTCTTCCAATCCTT+CGG 0.426075 2:-50582027 MsG0280009343.01.T01:CDS
CATGTTCTTCACATCTTGAC+CGG 0.428680 2:+50580868 None:intergenic
TGTTGCAGAGTTTGAAATGC+AGG 0.431814 2:-50581381 MsG0280009343.01.T01:CDS
TCAAGATTGCCCTTCTGTGT+TGG 0.433382 2:-50581869 MsG0280009343.01.T01:CDS
CACAATCTGTCCAATGGGGT+TGG 0.434427 2:-50582178 None:intergenic
GATCATTCCATTTAACCAAC+AGG 0.436934 2:+50578152 None:intergenic
TGGGTTTGAAGTTGGATTGA+AGG 0.437194 2:-50581050 MsG0280009343.01.T01:CDS
TTCACATCTTGACCGGTTTG+AGG 0.446780 2:+50580875 None:intergenic
ACAATCTGTCCAATGGGGTT+GGG 0.449876 2:-50582177 None:intergenic
CAGCCGAGAGGTCAGGGCGG+AGG 0.450679 2:-50581464 MsG0280009343.01.T01:CDS
GAACCAAGGTTGATTGCTTA+CGG 0.455676 2:-50581232 MsG0280009343.01.T01:CDS
TACTCAATCACATTGTATCT+AGG 0.456654 2:+50581094 None:intergenic
TCCCAATTAAGTAGAAATTG+AGG 0.461386 2:+50581844 None:intergenic
TGAATGATGTAACTCCCTAA+TGG 0.461405 2:+50580437 None:intergenic
TTGTTAAGGATTGGCGAAGG+TGG 0.462969 2:+50581938 None:intergenic
GTTGTTATTAGTTGAAGAAG+TGG 0.465877 2:+50582107 None:intergenic
CGGGGAAGCATTAGAAAGCT+TGG 0.465957 2:+50581798 None:intergenic
TGTTAAGGATTGGCGAAGGT+GGG 0.467753 2:+50581939 None:intergenic
TATGGAATTTGGGGTTCCTA+AGG 0.471062 2:-50581590 MsG0280009343.01.T01:CDS
ATCTCCATTCCCAAAACCCT+TGG 0.472530 2:+50581430 None:intergenic
GGTTAAGGTCTTGGCTCAGT+TGG 0.473212 2:-50578869 MsG0280009343.01.T01:intron
CTCCGCCCTGACCTCTCGGC+TGG 0.473380 2:+50581465 None:intergenic
GTGGTCACGGTTTGATCCGT+AGG 0.474464 2:-50581279 MsG0280009343.01.T01:CDS
GTTTGGAGTTTATAAAGAAT+GGG 0.474872 2:-50578834 MsG0280009343.01.T01:CDS
ACCCTATCAATTTCATCCTT+AGG 0.474968 2:+50581574 None:intergenic
ATTGAGTATTTGAAAGGAAA+AGG 0.475963 2:-50581079 MsG0280009343.01.T01:CDS
TTCCTTCATAAAAGATTCAT+CGG 0.477523 2:+50578227 None:intergenic
GGTCAGGGCGGAGGTTGTTA+GGG 0.481020 2:-50581455 MsG0280009343.01.T01:CDS
GTTGATTGCTTACGGTTTGG+AGG 0.485609 2:-50581224 MsG0280009343.01.T01:CDS
AAAAGAGGGTTGTTAAGGAT+TGG 0.487510 2:+50581929 None:intergenic
AGGAAGGAAAACCGAAGGAT+TGG 0.491372 2:+50582016 None:intergenic
TGGGATTTGGAATTGAGGAT+AGG 0.491709 2:-50581528 MsG0280009343.01.T01:CDS
TTGATATAAATTTCAAGTCA+TGG 0.495728 2:+50578801 None:intergenic
GGTTGTTAGATTGTTTCCTA+GGG 0.496449 2:-50581554 MsG0280009343.01.T01:CDS
ATATCAACTTCCTTTGTCCA+TGG 0.496672 2:-50578785 MsG0280009343.01.T01:CDS
ACTAATTCATTTAAGACAGA+AGG 0.498842 2:-50578205 MsG0280009343.01.T01:CDS
TGGACAACTGGCTAAAGTTA+GGG 0.499220 2:-50578765 MsG0280009343.01.T01:CDS
AAATGGGGAAGAGAAGAGGA+AGG 0.503719 2:+50582000 None:intergenic
AATGTGATTGAGTATTTGAA+AGG 0.505696 2:-50581085 MsG0280009343.01.T01:CDS
TTGTAAAATCTAAGCCTAGT+TGG 0.506128 2:+50581016 None:intergenic
AGATGTAGGTGGATTAGAAA+TGG 0.507251 2:+50582074 None:intergenic
TGTCTTTGGCTTCCACCTGT+TGG 0.508212 2:-50578167 MsG0280009343.01.T01:CDS
CGGAGGTTGTTAGGGATCCA+AGG 0.508723 2:-50581447 MsG0280009343.01.T01:CDS
CCACATAAGTTTCCTCAAAC+CGG 0.511821 2:-50580887 MsG0280009343.01.T01:CDS
AACAAGTTGGCGATCATCAA+CGG 0.516565 2:+50581778 None:intergenic
TTCATGAGTTGAGGAGTTTG+GGG 0.519712 2:-50581492 MsG0280009343.01.T01:CDS
TTTGATTATTCGCTTGGGAG+AGG 0.519725 2:+50578073 None:intergenic
TGTAGGTGGATTAGAAATGG+TGG 0.521617 2:+50582077 None:intergenic
TTTGAGGAAACTTATGTGGT+TGG 0.523505 2:+50580891 None:intergenic
AACAGCTTCCAAAGTCCAGC+TGG 0.524566 2:+50580914 None:intergenic
TAACTTTAGCCAGTTGTCCA+TGG 0.526403 2:+50578768 None:intergenic
GATCCGAATTGAAGAGGAAG+TGG 0.526858 2:+50581965 None:intergenic
GTTACATCATTCATTAGTTG+GGG 0.527719 2:-50580427 MsG0280009343.01.T01:CDS
GAGGAAATGGGGAAGAGAAG+AGG 0.540975 2:+50581996 None:intergenic
TCCTAAGGATGAAATTGATA+GGG 0.543797 2:-50581575 MsG0280009343.01.T01:CDS
GTTAAAAGTAAGCATCCAGC+TGG 0.546625 2:-50580929 MsG0280009343.01.T01:CDS
AAGGATTGGCGAAGGTGGGA+TGG 0.547823 2:+50581943 None:intergenic
CCGGTTTGAGGAAACTTATG+TGG 0.548415 2:+50580887 None:intergenic
GTGGATTGTTTGTGTGGTCA+CGG 0.552758 2:-50581292 MsG0280009343.01.T01:CDS
ATGGTGGAACCCAACCCCAT+TGG 0.554824 2:+50582168 None:intergenic
CCAAGCGAATAATCAAAAGA+AGG 0.557115 2:-50578067 MsG0280009343.01.T01:CDS
CCACCACAAGCAGTAGCTCA+TGG 0.559836 2:-50580485 MsG0280009343.01.T01:CDS
ATTCCAAATCCCAAAACCCT+AGG 0.561947 2:+50581538 None:intergenic
GTTGCAGAGTTTGAAATGCA+GGG 0.562878 2:-50581380 MsG0280009343.01.T01:CDS
CAACCTCCGCCCTGACCTCT+CGG 0.563699 2:+50581461 None:intergenic
CCATGAGCTACTGCTTGTGG+TGG 0.567964 2:+50580485 None:intergenic
GAGGACAACAAATACAGTCT+TGG 0.568498 2:+50578092 None:intergenic
TTGAGAGTGGATTGTTTGTG+TGG 0.573095 2:-50581298 MsG0280009343.01.T01:CDS
TCCCATTGCAGTTGTAATGG+GGG 0.579132 2:-50581644 MsG0280009343.01.T01:CDS
AAATTCACACCTAAGTATGA+AGG 0.579741 2:+50581133 None:intergenic
TGCTTTGAAGGTGTTGTGGA+AGG 0.580553 2:-50581254 MsG0280009343.01.T01:CDS
TTCCCATTGCAGTTGTAATG+GGG 0.586307 2:-50581645 MsG0280009343.01.T01:CDS
AATTGAGGTTCCAACACAGA+AGG 0.588412 2:+50581859 None:intergenic
AGCTGTTGATTCATGAGTTG+AGG 0.589517 2:-50581501 MsG0280009343.01.T01:CDS
GGAGGTTGTTAGGGATCCAA+GGG 0.599772 2:-50581446 MsG0280009343.01.T01:CDS
TGTAGAACAACTCAACAAGT+TGG 0.602305 2:+50581765 None:intergenic
AGGTCTTGGCTCAGTTGGAG+CGG 0.602503 2:-50578864 MsG0280009343.01.T01:CDS
AGCCAGTTGTCCATGGACAA+AGG 0.602680 2:+50578775 None:intergenic
ATTGAGGTTCCAACACAGAA+GGG 0.606343 2:+50581860 None:intergenic
GGGTTGTTAAGGATTGGCGA+AGG 0.612411 2:+50581935 None:intergenic
AAACCGTAAGCAATCAACCT+TGG 0.613186 2:+50581229 None:intergenic
GGGATGCTTTGAAGGTGTTG+TGG 0.613256 2:-50581258 MsG0280009343.01.T01:CDS
CATTCCATTTAACCAACAGG+TGG 0.613700 2:+50578155 None:intergenic
TGTTTGGAACAGTAGAGTTG+AGG 0.615894 2:-50580460 MsG0280009343.01.T01:CDS
AGAAGAGGAAGGAAAACCGA+AGG 0.618756 2:+50582011 None:intergenic
GGGATGGATCCGAATTGAAG+AGG 0.622695 2:+50581959 None:intergenic
ACTTTACGGGAAATTTCAAG+TGG 0.630860 2:+50581727 None:intergenic
ATTCCATGAGCTACTGCTTG+TGG 0.636151 2:+50580482 None:intergenic
TGGTCACGGTTTGATCCGTA+GGG 0.637002 2:-50581278 MsG0280009343.01.T01:CDS
CTTTACGGGAAATTTCAAGT+GGG 0.640015 2:+50581728 None:intergenic
CAACTGGCTAAAGTTAGGGA+AGG 0.640037 2:-50578761 MsG0280009343.01.T01:CDS
AGGACATCATCAAACCAACT+AGG 0.642474 2:-50581030 MsG0280009343.01.T01:CDS
ACACCTTCAAAGCATCCCTA+CGG 0.648597 2:+50581263 None:intergenic
TCAAGATGTGAAGAACATGA+AGG 0.654568 2:-50580864 MsG0280009343.01.T01:CDS
TTTCTGTAATGAGATGTAGG+TGG 0.659285 2:+50582063 None:intergenic
GCAGGGAGGCAATTAAAGAG+AGG 0.662756 2:-50581363 MsG0280009343.01.T01:CDS
TTCCAGCCGAGAGGTCAGGG+CGG 0.702811 2:-50581467 MsG0280009343.01.T01:CDS
AGGTGTTGTGGAAGGAACCA+AGG 0.704640 2:-50581246 MsG0280009343.01.T01:CDS
GCAGAGTTTGAAATGCAGGG+AGG 0.745889 2:-50581377 MsG0280009343.01.T01:CDS
CAAGTTGGCGATCATCAACG+GGG 0.759642 2:+50581780 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATATTTTAACAGAAAA+AGG + Chr2:50581295-50581314 None:intergenic 10.0%
!!! AAATTAATTTTAAATCACAA+AGG - Chr2:50579610-50579629 MsG0280009343.01.T01:intron 10.0%
!!! AATTAATTTTAAATCACAAA+GGG - Chr2:50579611-50579630 MsG0280009343.01.T01:intron 10.0%
!!! TGTGATTTAAAATTAATTTT+GGG + Chr2:50579609-50579628 None:intergenic 10.0%
!!! TTGTGATTTAAAATTAATTT+TGG + Chr2:50579610-50579629 None:intergenic 10.0%
!! AACATATAATATGAACTTAA+GGG + Chr2:50580699-50580718 None:intergenic 15.0%
!! AAGAATTATAAAAATGTTAG+TGG - Chr2:50579708-50579727 MsG0280009343.01.T01:intron 15.0%
!! TAAAAATTAAACTGTTTCAA+GGG - Chr2:50580242-50580261 MsG0280009343.01.T01:intron 15.0%
!! TATAAAAAAATCTTAAAGTG+AGG + Chr2:50580560-50580579 None:intergenic 15.0%
!!! TTAATTTTCTTATGGAATTT+GGG - Chr2:50578627-50578646 MsG0280009343.01.T01:intron 15.0%
!!! TTGAAACAGTTTAATTTTTA+GGG + Chr2:50580242-50580261 None:intergenic 15.0%
!! CAGAATGTGAAAAAATATAT+GGG - Chr2:50579254-50579273 MsG0280009343.01.T01:intron 20.0%
!! CTAAAAATTAAACTGTTTCA+AGG - Chr2:50580241-50580260 MsG0280009343.01.T01:intron 20.0%
!! GAACATATAATATGAACTTA+AGG + Chr2:50580700-50580719 None:intergenic 20.0%
!!! AAAAATATATGGGAGATTTT+CGG - Chr2:50579264-50579283 MsG0280009343.01.T01:intron 20.0%
!!! AATGTTTTTCTCGTAAAATT+TGG + Chr2:50580969-50580988 None:intergenic 20.0%
!!! ACATGTATCTAAAATTGTTA+GGG - Chr2:50581790-50581809 MsG0280009343.01.T01:CDS 20.0%
!!! ACTAATGTTTGATATGATTT+TGG - Chr2:50581337-50581356 MsG0280009343.01.T01:CDS 20.0%
!!! ATGTTTTTCTCGTAAAATTT+GGG + Chr2:50580968-50580987 None:intergenic 20.0%
!!! CTTGAAACAGTTTAATTTTT+AGG + Chr2:50580243-50580262 None:intergenic 20.0%
!!! GTTAATTTTCTTATGGAATT+TGG - Chr2:50578626-50578645 MsG0280009343.01.T01:intron 20.0%
!!! TAATTTTCTTATGGAATTTG+GGG - Chr2:50578628-50578647 MsG0280009343.01.T01:intron 20.0%
!!! TTCTGATGATGTTTTATTAA+GGG - Chr2:50578547-50578566 MsG0280009343.01.T01:intron 20.0%
!!! TTGATATAAATTTCAAGTCA+TGG + Chr2:50581429-50581448 None:intergenic 20.0%
!!! TTTCTGATGATGTTTTATTA+AGG - Chr2:50578546-50578565 MsG0280009343.01.T01:intron 20.0%
! AAAATCTGTAAAACTCTTGA+AGG - Chr2:50581241-50581260 MsG0280009343.01.T01:CDS 25.0%
! AAATACGTAAAAGACAAAAC+AGG + Chr2:50580005-50580024 None:intergenic 25.0%
! AAATTCTGAACAATGCATAT+AGG + Chr2:50580666-50580685 None:intergenic 25.0%
! AACCTCAATTTCTACTTAAT+TGG - Chr2:50578381-50578400 MsG0280009343.01.T01:intron 25.0%
! AATACGTAAAAGACAAAACA+GGG + Chr2:50580004-50580023 None:intergenic 25.0%
! AATCTTGAAGAAGTGAAATT+AGG + Chr2:50578346-50578365 None:intergenic 25.0%
! AATGTGATTGAGTATTTGAA+AGG - Chr2:50579142-50579161 MsG0280009343.01.T01:intron 25.0%
! ACAATTGTACAGAGATTTAT+TGG - Chr2:50581191-50581210 MsG0280009343.01.T01:CDS 25.0%
! ACCTCAATTTCTACTTAATT+GGG - Chr2:50578382-50578401 MsG0280009343.01.T01:intron 25.0%
! AGTTACATCATTCATTAGTT+GGG - Chr2:50579799-50579818 MsG0280009343.01.T01:intron 25.0%
! ATTGAGTATTTGAAAGGAAA+AGG - Chr2:50579148-50579167 MsG0280009343.01.T01:intron 25.0%
! ATTTCTACTTAATTGGGAAT+TGG - Chr2:50578388-50578407 MsG0280009343.01.T01:intron 25.0%
! CAATTGTACAGAGATTTATT+GGG - Chr2:50581192-50581211 MsG0280009343.01.T01:CDS 25.0%
! CCAGAATGTGAAAAAATATA+TGG - Chr2:50579253-50579272 MsG0280009343.01.T01:intron 25.0%
! CCCTAAAAATTTCAACTTTA+CGG + Chr2:50578517-50578536 None:intergenic 25.0%
! CCTAAAAATTTCAACTTTAC+GGG + Chr2:50578516-50578535 None:intergenic 25.0%
! TACAGAGATAACTCATATTA+GGG + Chr2:50580460-50580479 None:intergenic 25.0%
! TCCACATTAAAACAATATAG+TGG + Chr2:50580213-50580232 None:intergenic 25.0%
! TGATCAAAATATTGGCATTT+GGG - Chr2:50581957-50581976 MsG0280009343.01.T01:CDS 25.0%
! TTAATCCAAAGGATGAAATA+TGG - Chr2:50579049-50579068 MsG0280009343.01.T01:intron 25.0%
! TTACAGAGATAACTCATATT+AGG + Chr2:50580461-50580480 None:intergenic 25.0%
! TTCCTTCATAAAAGATTCAT+CGG + Chr2:50582003-50582022 None:intergenic 25.0%
! TTGATCAAAATATTGGCATT+TGG - Chr2:50581956-50581975 MsG0280009343.01.T01:CDS 25.0%
! TTTCTACTTAATTGGGAATT+GGG - Chr2:50578389-50578408 MsG0280009343.01.T01:intron 25.0%
!! AAAAGTGCAAAAAATGAAGA+AGG + Chr2:50579857-50579876 None:intergenic 25.0%
!! AAAATATATGGGAGATTTTC+GGG - Chr2:50579265-50579284 MsG0280009343.01.T01:intron 25.0%
!! AAATTTCAAGTGGGTTTAAA+TGG + Chr2:50578493-50578512 None:intergenic 25.0%
!! ACTAATTCATTTAAGACAGA+AGG - Chr2:50582022-50582041 MsG0280009343.01.T01:CDS 25.0%
!! AGATTGAGTTTTTAATCCAA+AGG - Chr2:50579038-50579057 MsG0280009343.01.T01:intron 25.0%
!! ATGCATTGTTCAGAATTTTA+TGG - Chr2:50580668-50580687 MsG0280009343.01.T01:intron 25.0%
!! ATGTATCTAAAATTGTTAGG+GGG - Chr2:50581792-50581811 MsG0280009343.01.T01:CDS 25.0%
!! CACATGTATCTAAAATTGTT+AGG - Chr2:50581789-50581808 MsG0280009343.01.T01:CDS 25.0%
!! CATGTATCTAAAATTGTTAG+GGG - Chr2:50581791-50581810 MsG0280009343.01.T01:CDS 25.0%
!! CCGTAAAGTTGAAATTTTTA+GGG - Chr2:50578514-50578533 MsG0280009343.01.T01:intron 25.0%
!! CTAACAATTTTAGATACATG+TGG + Chr2:50581791-50581810 None:intergenic 25.0%
!! GAGTTTTACAGATTTTATTC+TGG + Chr2:50581237-50581256 None:intergenic 25.0%
!! GTTTGGAGTTTATAAAGAAT+GGG - Chr2:50581393-50581412 MsG0280009343.01.T01:CDS 25.0%
!! TGTTTGGAGTTTATAAAGAA+TGG - Chr2:50581392-50581411 MsG0280009343.01.T01:CDS 25.0%
!! TTTTGATACTGAAATGTCTT+TGG - Chr2:50582046-50582065 MsG0280009343.01.T01:CDS 25.0%
!!! ACCACTATATTGTTTTAATG+TGG - Chr2:50580209-50580228 MsG0280009343.01.T01:intron 25.0%
!!! ACTTGAGTTGATCAAAATAT+TGG - Chr2:50581949-50581968 MsG0280009343.01.T01:CDS 25.0%
!!! ATTTTTTCACATTCTGGATA+AGG + Chr2:50579250-50579269 None:intergenic 25.0%
!!! CCATATATTTTTTCACATTC+TGG + Chr2:50579256-50579275 None:intergenic 25.0%
!!! CGTAAAGTTGAAATTTTTAG+GGG - Chr2:50578515-50578534 MsG0280009343.01.T01:intron 25.0%
!!! GTTTGATATGATTTTGGTTA+AGG - Chr2:50581343-50581362 MsG0280009343.01.T01:CDS 25.0%
!!! TATTGTAACTCTTTTTTCGT+TGG - Chr2:50581821-50581840 MsG0280009343.01.T01:CDS 25.0%
!!! TCGATAAGTTTTTCAAATGA+AGG + Chr2:50581621-50581640 None:intergenic 25.0%
!!! TGATGTTTTATTAAGGGTTT+TGG - Chr2:50578553-50578572 MsG0280009343.01.T01:intron 25.0%
AAATTCACACCTAAGTATGA+AGG + Chr2:50579097-50579116 None:intergenic 30.0%
AAGTGGTTCTTACAAGAATA+AGG + Chr2:50578106-50578125 None:intergenic 30.0%
AATACTGTTAGTTGGATGAA+TGG - Chr2:50579423-50579442 MsG0280009343.01.T01:intron 30.0%
ACTCATATTAGGGAAAAGAA+AGG + Chr2:50580450-50580469 None:intergenic 30.0%
CTAAACCTCTGCAATAAATT+TGG + Chr2:50581708-50581727 None:intergenic 30.0%
GAAGGAAAAAAAGTAAACTC+GGG - Chr2:50581484-50581503 MsG0280009343.01.T01:CDS 30.0%
GAGTTACATCATTCATTAGT+TGG - Chr2:50579798-50579817 MsG0280009343.01.T01:intron 30.0%
GATCTATGAATACTGTTAGT+TGG - Chr2:50579415-50579434 MsG0280009343.01.T01:intron 30.0%
GCAAATGAATGAATTTGGAA+TGG + Chr2:50580313-50580332 None:intergenic 30.0%
GGAAGGAAAAAAAGTAAACT+CGG - Chr2:50581483-50581502 MsG0280009343.01.T01:CDS 30.0%
GTTACATCATTCATTAGTTG+GGG - Chr2:50579800-50579819 MsG0280009343.01.T01:intron 30.0%
TACTCAATCACATTGTATCT+AGG + Chr2:50579136-50579155 None:intergenic 30.0%
TATTCTCTAATGATTGCAGA+TGG - Chr2:50581072-50581091 MsG0280009343.01.T01:CDS 30.0%
TCCCAATTAAGTAGAAATTG+AGG + Chr2:50578386-50578405 None:intergenic 30.0%
TCCTAAGGATGAAATTGATA+GGG - Chr2:50578652-50578671 MsG0280009343.01.T01:intron 30.0%
TTCCTAAGGATGAAATTGAT+AGG - Chr2:50578651-50578670 MsG0280009343.01.T01:intron 30.0%
TTGTAAAATCTAAGCCTAGT+TGG + Chr2:50579214-50579233 None:intergenic 30.0%
! AGTGAAATTAGGTTTTTCTG+TGG + Chr2:50578335-50578354 None:intergenic 30.0%
! CCCGTAAAGTTGAAATTTTT+AGG - Chr2:50578513-50578532 MsG0280009343.01.T01:intron 30.0%
! GAAAGCTTGGATATGAATTT+TGG + Chr2:50578419-50578438 None:intergenic 30.0%
! GCAATTAAAGAGAGGATTTT+TGG - Chr2:50578872-50578891 MsG0280009343.01.T01:intron 30.0%
! GTTGTTATTAGTTGAAGAAG+TGG + Chr2:50578123-50578142 None:intergenic 30.0%
! GTTTTTCTGTGGAATTTTGA+AGG + Chr2:50578324-50578343 None:intergenic 30.0%
! TGTTTTCTGTAATGAGATGT+AGG + Chr2:50578170-50578189 None:intergenic 30.0%
!! CTTCTTTTGATTATTCGCTT+GGG + Chr2:50582162-50582181 None:intergenic 30.0%
!! GTTGAAATTTTTAGGGGTTT+AGG - Chr2:50578521-50578540 MsG0280009343.01.T01:intron 30.0%
!! TCTGCTATTTGATCATGTTT+TGG + Chr2:50580847-50580866 None:intergenic 30.0%
!! TGGAATTTTGAAGGAAAAGA+GGG + Chr2:50578315-50578334 None:intergenic 30.0%
!! TGTTTTATTAAGGGTTTTGG+AGG - Chr2:50578556-50578575 MsG0280009343.01.T01:intron 30.0%
!!! GTTGTTTCTTTTTCTGACTA+TGG + Chr2:50578081-50578100 None:intergenic 30.0%
!!! TATGATTTTGGTTAAGGTCT+TGG - Chr2:50581349-50581368 MsG0280009343.01.T01:CDS 30.0%
!!! TGCATAAACTTGTTTTGCAT+AGG + Chr2:50579497-50579516 None:intergenic 30.0%
!!! TGGTGTCGTTAATTTTCTTA+TGG - Chr2:50578619-50578638 MsG0280009343.01.T01:intron 30.0%
AAAAGAGGGTTGTTAAGGAT+TGG + Chr2:50578301-50578320 None:intergenic 35.0%
AAACCACTTCCTCTTCAATT+CGG - Chr2:50578259-50578278 MsG0280009343.01.T01:intron 35.0%
AAACTGTTTCAAGGGCAATT+TGG - Chr2:50580250-50580269 MsG0280009343.01.T01:intron 35.0%
AACATGCGAATTCACAGATT+TGG + Chr2:50579650-50579669 None:intergenic 35.0%
AACTGTTTCAAGGGCAATTT+GGG - Chr2:50580251-50580270 MsG0280009343.01.T01:intron 35.0%
AAGATCCAACCAAAAAGAGA+AGG + Chr2:50581598-50581617 None:intergenic 35.0%
ACCCTATCAATTTCATCCTT+AGG + Chr2:50578656-50578675 None:intergenic 35.0%
ACTTTACGGGAAATTTCAAG+TGG + Chr2:50578503-50578522 None:intergenic 35.0%
AGGATTGACTACCTAGATTT+GGG - Chr2:50580896-50580915 MsG0280009343.01.T01:CDS 35.0%
ATATCAACTTCCTTTGTCCA+TGG - Chr2:50581442-50581461 MsG0280009343.01.T01:CDS 35.0%
ATCCACAATTGCATCACAAT+CGG - Chr2:50579936-50579955 MsG0280009343.01.T01:intron 35.0%
ATGAATCTACTTGCATCTCT+AGG - Chr2:50581655-50581674 MsG0280009343.01.T01:CDS 35.0%
ATGCTTTCAGAGTTCTTGAA+AGG - Chr2:50581864-50581883 MsG0280009343.01.T01:CDS 35.0%
ATTGAAAGAACATGACTGCA+TGG + Chr2:50580413-50580432 None:intergenic 35.0%
ATTTCCCATTGCAGTTGTAA+TGG - Chr2:50578580-50578599 MsG0280009343.01.T01:intron 35.0%
CAACACCATATTTCATCCTT+TGG + Chr2:50579057-50579076 None:intergenic 35.0%
CATGAAGTTCCTTCATACTT+AGG - Chr2:50579085-50579104 MsG0280009343.01.T01:intron 35.0%
CCAAGCGAATAATCAAAAGA+AGG - Chr2:50582160-50582179 MsG0280009343.01.T01:CDS 35.0%
CTATTGAACAATTGCGATTC+TGG - Chr2:50581517-50581536 MsG0280009343.01.T01:CDS 35.0%
GACTTCCAAATTTATTGCAG+AGG - Chr2:50581700-50581719 MsG0280009343.01.T01:CDS 35.0%
GAGTTGTACTAAGCAAAGAT+AGG - Chr2:50579517-50579536 MsG0280009343.01.T01:intron 35.0%
GATCATTCCATTTAACCAAC+AGG + Chr2:50582078-50582097 None:intergenic 35.0%
GGTTGTTAGATTGTTTCCTA+GGG - Chr2:50578673-50578692 MsG0280009343.01.T01:intron 35.0%
TAGGATTGACTACCTAGATT+TGG - Chr2:50580895-50580914 MsG0280009343.01.T01:CDS 35.0%
TCAAGATGTGAAGAACATGA+AGG - Chr2:50579363-50579382 MsG0280009343.01.T01:intron 35.0%
TGAATCTACTTGCATCTCTA+GGG - Chr2:50581656-50581675 MsG0280009343.01.T01:CDS 35.0%
TGAATGATGTAACTCCCTAA+TGG + Chr2:50579793-50579812 None:intergenic 35.0%
TGCTTTCAGAGTTCTTGAAA+GGG - Chr2:50581865-50581884 MsG0280009343.01.T01:CDS 35.0%
TGTAGAACAACTCAACAAGT+TGG + Chr2:50578465-50578484 None:intergenic 35.0%
TGTTGATACTCAACAGTGTA+TGG - Chr2:50579827-50579846 MsG0280009343.01.T01:intron 35.0%
TTATTGCAGAGGTTTAGTCT+TGG - Chr2:50581711-50581730 MsG0280009343.01.T01:CDS 35.0%
TTTCCCATTGCAGTTGTAAT+GGG - Chr2:50578581-50578600 MsG0280009343.01.T01:intron 35.0%
TTTCTGTAATGAGATGTAGG+TGG + Chr2:50578167-50578186 None:intergenic 35.0%
TTTGAGGAAACTTATGTGGT+TGG + Chr2:50579339-50579358 None:intergenic 35.0%
! AGATTGTTTCCTAGGGTTTT+GGG - Chr2:50578680-50578699 MsG0280009343.01.T01:intron 35.0%
! ATTCATGAGTTGAGGAGTTT+GGG - Chr2:50578734-50578753 MsG0280009343.01.T01:intron 35.0%
! ATTGAAGAGGAAGTGGTTTT+TGG + Chr2:50578258-50578277 None:intergenic 35.0%
! CTATACTGATTGTCATAGCA+AGG - Chr2:50581128-50581147 MsG0280009343.01.T01:CDS 35.0%
! CTTTACGGGAAATTTCAAGT+GGG + Chr2:50578502-50578521 None:intergenic 35.0%
! GTTTCTTTTTCTGACTATGG+TGG + Chr2:50578078-50578097 None:intergenic 35.0%
! TAGATTGTTTCCTAGGGTTT+TGG - Chr2:50578679-50578698 MsG0280009343.01.T01:intron 35.0%
! TATTCCATGCCTTCTCTTTT+TGG - Chr2:50581586-50581605 MsG0280009343.01.T01:CDS 35.0%
! TGAAAGGAAAAGGTGCAATT+GGG - Chr2:50579158-50579177 MsG0280009343.01.T01:intron 35.0%
! TGCCGATGAATCTTTTATGA+AGG - Chr2:50581998-50582017 MsG0280009343.01.T01:CDS 35.0%
! TTGAAAGGAAAAGGTGCAAT+TGG - Chr2:50579157-50579176 MsG0280009343.01.T01:intron 35.0%
!! AAAGAGAGGATTTTTGGAGA+GGG - Chr2:50578878-50578897 MsG0280009343.01.T01:intron 35.0%
!! ACTCAAAGTACTGCAGAAAA+AGG - Chr2:50579562-50579581 MsG0280009343.01.T01:intron 35.0%
!! AGATGTAGGTGGATTAGAAA+TGG + Chr2:50578156-50578175 None:intergenic 35.0%
!! CCTTCTTTTGATTATTCGCT+TGG + Chr2:50582163-50582182 None:intergenic 35.0%
!! GTGGAATTTTGAAGGAAAAG+AGG + Chr2:50578316-50578335 None:intergenic 35.0%
!! GTTTAGTCTTGGAGTTATGT+TGG - Chr2:50581722-50581741 MsG0280009343.01.T01:CDS 35.0%
!! TAAAGAGAGGATTTTTGGAG+AGG - Chr2:50578877-50578896 MsG0280009343.01.T01:intron 35.0%
!!! TTTTGAAGTGAAGTTGAGAG+TGG - Chr2:50578916-50578935 MsG0280009343.01.T01:intron 35.0%
AAACCGTAAGCAATCAACCT+TGG + Chr2:50579001-50579020 None:intergenic 40.0%
AACCCCAAAAGCTATCTCAA+GGG - Chr2:50580932-50580951 MsG0280009343.01.T01:CDS 40.0%
AATTGAGGTTCCAACACAGA+AGG + Chr2:50578371-50578390 None:intergenic 40.0%
ACGGCGCAAATGAATGAATT+TGG + Chr2:50580318-50580337 None:intergenic 40.0%
AGGACATCATCAAACCAACT+AGG - Chr2:50579197-50579216 MsG0280009343.01.T01:intron 40.0%
AGGTAGTCAATCCTAGATAG+CGG + Chr2:50580890-50580909 None:intergenic 40.0%
AGTACTGCAGAAAAAGGAGA+AGG - Chr2:50579568-50579587 MsG0280009343.01.T01:intron 40.0%
ATGGACAACTGGCTAAAGTT+AGG - Chr2:50581461-50581480 MsG0280009343.01.T01:CDS 40.0%
ATGGGGGAAACTCAAATTGT+TGG - Chr2:50578599-50578618 MsG0280009343.01.T01:intron 40.0%
ATTCCAAATCCCAAAACCCT+AGG + Chr2:50578692-50578711 None:intergenic 40.0%
ATTGAGGTTCCAACACAGAA+GGG + Chr2:50578370-50578389 None:intergenic 40.0%
CATGTTCTTCACATCTTGAC+CGG + Chr2:50579362-50579381 None:intergenic 40.0%
CATTCCATTTAACCAACAGG+TGG + Chr2:50582075-50582094 None:intergenic 40.0%
CCACATAAGTTTCCTCAAAC+CGG - Chr2:50579340-50579359 MsG0280009343.01.T01:intron 40.0%
CGCTACAATGAGGATAATAG+CGG - Chr2:50580113-50580132 MsG0280009343.01.T01:intron 40.0%
CGCTATTATCCTCATTGTAG+CGG + Chr2:50580115-50580134 None:intergenic 40.0%
CGTGTTCAAGCTCAAAATCA+TGG + Chr2:50579450-50579469 None:intergenic 40.0%
GAAGAACATGAAGGCTTTCA+TGG - Chr2:50579372-50579391 MsG0280009343.01.T01:intron 40.0%
GAAGGAAAAGAGGGTTGTTA+AGG + Chr2:50578306-50578325 None:intergenic 40.0%
GAGGACAACAAATACAGTCT+TGG + Chr2:50582138-50582157 None:intergenic 40.0%
GCTAATCTCTTCCAATCCTT+CGG - Chr2:50578200-50578219 MsG0280009343.01.T01:CDS 40.0%
GGGTTGTTAGATTGTTTCCT+AGG - Chr2:50578672-50578691 MsG0280009343.01.T01:intron 40.0%
GTTAAAAGTAAGCATCCAGC+TGG - Chr2:50579298-50579317 MsG0280009343.01.T01:intron 40.0%
TAACTTTAGCCAGTTGTCCA+TGG + Chr2:50581462-50581481 None:intergenic 40.0%
TAGGGAGGAATATCTTGTTC+TGG - Chr2:50581674-50581693 MsG0280009343.01.T01:CDS 40.0%
TCATGGATTCAATGCTGTAG+TGG - Chr2:50579389-50579408 MsG0280009343.01.T01:intron 40.0%
TCTTGAAAGGGTGACATTAC+AGG - Chr2:50581877-50581896 MsG0280009343.01.T01:CDS 40.0%
TGAACAATTGCGATTCTGGA+GGG - Chr2:50581521-50581540 MsG0280009343.01.T01:CDS 40.0%
TGCAGTACTTTGAGTAATGC+AGG + Chr2:50579557-50579576 None:intergenic 40.0%
TGGACAACTGGCTAAAGTTA+GGG - Chr2:50581462-50581481 MsG0280009343.01.T01:CDS 40.0%
TTAGGGCTCACAAACTTGAA+CGG + Chr2:50580337-50580356 None:intergenic 40.0%
TTCCCATTGCAGTTGTAATG+GGG - Chr2:50578582-50578601 MsG0280009343.01.T01:intron 40.0%
TTGAACAATTGCGATTCTGG+AGG - Chr2:50581520-50581539 MsG0280009343.01.T01:CDS 40.0%
TTGCATCACAATCGGTATTC+TGG - Chr2:50579944-50579963 MsG0280009343.01.T01:intron 40.0%
TTTGATTATTCGCTTGGGAG+AGG + Chr2:50582157-50582176 None:intergenic 40.0%
! AACAAGTTGGCGATCATCAA+CGG + Chr2:50578452-50578471 None:intergenic 40.0%
! AAGGTTGATTGCTTACGGTT+TGG - Chr2:50579000-50579019 MsG0280009343.01.T01:intron 40.0%
! AGAGAAGGCATGGAATATCT+CGG + Chr2:50581583-50581602 None:intergenic 40.0%
! ATTGGCATTTGGGCTTTTCA+GGG - Chr2:50581967-50581986 MsG0280009343.01.T01:CDS 40.0%
! CCAGAATTTGTTCCAAAGCT+CGG - Chr2:50581926-50581945 MsG0280009343.01.T01:CDS 40.0%
! CGATGGTTGACTTAAGAAAG+TGG - Chr2:50581747-50581766 MsG0280009343.01.T01:CDS 40.0%
! GAACCAAGGTTGATTGCTTA+CGG - Chr2:50578995-50579014 MsG0280009343.01.T01:intron 40.0%
! GAGGAAGAAGAAAAGCATGA+TGG + Chr2:50580541-50580560 None:intergenic 40.0%
! GATTCATGAGTTGAGGAGTT+TGG - Chr2:50578733-50578752 MsG0280009343.01.T01:intron 40.0%
! GTTGCAGAGTTTGAAATGCA+GGG - Chr2:50578847-50578866 MsG0280009343.01.T01:CDS 40.0%
! TACCGATTGTGATGCAATTG+TGG + Chr2:50579941-50579960 None:intergenic 40.0%
! TATGGAATTTGGGGTTCCTA+AGG - Chr2:50578637-50578656 MsG0280009343.01.T01:intron 40.0%
! TATTGGCATTTGGGCTTTTC+AGG - Chr2:50581966-50581985 MsG0280009343.01.T01:CDS 40.0%
! TGGAGATTGGGGAATTTTCA+CGG - Chr2:50578813-50578832 MsG0280009343.01.T01:CDS 40.0%
! TGGGATTTGGAATTGAGGAT+AGG - Chr2:50578699-50578718 MsG0280009343.01.T01:intron 40.0%
! TGGGTTTGAAGTTGGATTGA+AGG - Chr2:50579177-50579196 MsG0280009343.01.T01:intron 40.0%
! TGTTGCAGAGTTTGAAATGC+AGG - Chr2:50578846-50578865 MsG0280009343.01.T01:CDS 40.0%
! TGTTTGGAACAGTAGAGTTG+AGG - Chr2:50579767-50579786 MsG0280009343.01.T01:intron 40.0%
! TTCATGAGTTGAGGAGTTTG+GGG - Chr2:50578735-50578754 MsG0280009343.01.T01:intron 40.0%
!! AAGTGGATTGCAACAAGAAG+TGG - Chr2:50581764-50581783 MsG0280009343.01.T01:CDS 40.0%
!! AGCTGTTGATTCATGAGTTG+AGG - Chr2:50578726-50578745 MsG0280009343.01.T01:intron 40.0%
!! AGTGGTTTTTGGAGAGGAAA+TGG + Chr2:50578247-50578266 None:intergenic 40.0%
!! GTGGTTTTTGGAGAGGAAAT+GGG + Chr2:50578246-50578265 None:intergenic 40.0%
!! TGGTTTTTGGAGAGGAAATG+GGG + Chr2:50578245-50578264 None:intergenic 40.0%
!! TGTAGGTGGATTAGAAATGG+TGG + Chr2:50578153-50578172 None:intergenic 40.0%
!! TTGAGAGTGGATTGTTTGTG+TGG - Chr2:50578929-50578948 MsG0280009343.01.T01:intron 40.0%
!! TTTTGGAGAGGGTTTGGTTA+GGG - Chr2:50578889-50578908 MsG0280009343.01.T01:intron 40.0%
!! TTTTTGGAGAGGGTTTGGTT+AGG - Chr2:50578888-50578907 MsG0280009343.01.T01:intron 40.0%
!!! ATATGGGAGATTTTCGGGTA+AGG - Chr2:50579270-50579289 MsG0280009343.01.T01:intron 40.0%
!!! GGTTTTGGGATTTGGAATTG+AGG - Chr2:50578694-50578713 MsG0280009343.01.T01:intron 40.0%
!!! TTTCCTAGGGTTTTGGGATT+TGG - Chr2:50578686-50578705 MsG0280009343.01.T01:intron 40.0%
AAATGGGGAAGAGAAGAGGA+AGG + Chr2:50578230-50578249 None:intergenic 45.0%
ACAGAGCGATGAAAACGGTT+AGG + Chr2:50580355-50580374 None:intergenic 45.0%
ACAGTAGAGTTGAGGCCATT+AGG - Chr2:50579775-50579794 MsG0280009343.01.T01:intron 45.0%
ACCCCAAAAGCTATCTCAAG+GGG - Chr2:50580933-50580952 MsG0280009343.01.T01:CDS 45.0%
ACGGAACAGAGCGATGAAAA+CGG + Chr2:50580360-50580379 None:intergenic 45.0%
AGAAGAGGAAGGAAAACCGA+AGG + Chr2:50578219-50578238 None:intergenic 45.0%
AGGAAGGAAAACCGAAGGAT+TGG + Chr2:50578214-50578233 None:intergenic 45.0%
ATAAGCTATCCCCGCTATCT+AGG - Chr2:50580876-50580895 MsG0280009343.01.T01:CDS 45.0%
ATCAACTCAAGTCCGAGCTT+TGG + Chr2:50581941-50581960 None:intergenic 45.0%
ATCTCCATTCCCAAAACCCT+TGG + Chr2:50578800-50578819 None:intergenic 45.0%
ATTCCATGAGCTACTGCTTG+TGG + Chr2:50579748-50579767 None:intergenic 45.0%
CAACCCCAAAAGCTATCTCA+AGG - Chr2:50580931-50580950 MsG0280009343.01.T01:CDS 45.0%
CAACTGGCTAAAGTTAGGGA+AGG - Chr2:50581466-50581485 MsG0280009343.01.T01:CDS 45.0%
CAGAGCGATGAAAACGGTTA+GGG + Chr2:50580354-50580373 None:intergenic 45.0%
CAGTAGAGTTGAGGCCATTA+GGG - Chr2:50579776-50579795 MsG0280009343.01.T01:intron 45.0%
CCAACCAAAAAGAGAAGGCA+TGG + Chr2:50581593-50581612 None:intergenic 45.0%
CGATGGGTGCAAAACTTGAA+CGG + Chr2:50580379-50580398 None:intergenic 45.0%
CTCAAACCTAGCCCAAATCT+AGG + Chr2:50580910-50580929 None:intergenic 45.0%
GAAAGAACATGACTGCATGG+TGG + Chr2:50580410-50580429 None:intergenic 45.0%
GATCCGAATTGAAGAGGAAG+TGG + Chr2:50578265-50578284 None:intergenic 45.0%
GCAGTAGCTCATGGAATGTT+TGG - Chr2:50579751-50579770 MsG0280009343.01.T01:intron 45.0%
GGTAGTCAATCCTAGATAGC+GGG + Chr2:50580889-50580908 None:intergenic 45.0%
GTAGTCAATCCTAGATAGCG+GGG + Chr2:50580888-50580907 None:intergenic 45.0%
GTGACATTACAGGAAGCCAA+TGG - Chr2:50581887-50581906 MsG0280009343.01.T01:CDS 45.0%
GTGATGCAATTGTGGATGCA+AGG + Chr2:50579933-50579952 None:intergenic 45.0%
TCAAGATTGCCCTTCTGTGT+TGG - Chr2:50578358-50578377 MsG0280009343.01.T01:intron 45.0%
TCCCATTGCAGTTGTAATGG+GGG - Chr2:50578583-50578602 MsG0280009343.01.T01:intron 45.0%
TCCCCCATTACAACTGCAAT+GGG + Chr2:50578587-50578606 None:intergenic 45.0%
TGACTACCTAGATTTGGGCT+AGG - Chr2:50580901-50580920 MsG0280009343.01.T01:CDS 45.0%
TGGAGGGTTTGCATTCGATA+TGG - Chr2:50581537-50581556 MsG0280009343.01.T01:CDS 45.0%
TTCCCCCATTACAACTGCAA+TGG + Chr2:50578588-50578607 None:intergenic 45.0%
TTCCTTTGTCCATGGACAAC+TGG - Chr2:50581450-50581469 MsG0280009343.01.T01:CDS 45.0%
TTGGAGTTATGTTGGTGCGA+TGG - Chr2:50581730-50581749 MsG0280009343.01.T01:CDS 45.0%
! ACAAGTTGGCGATCATCAAC+GGG + Chr2:50578451-50578470 None:intergenic 45.0%
! ACACCTTCAAAGCATCCCTA+CGG + Chr2:50578967-50578986 None:intergenic 45.0%
! ATAGCGGGGATAGCTTATAG+CGG + Chr2:50580874-50580893 None:intergenic 45.0%
! ATCTACTTGCATCTCTAGGG+AGG - Chr2:50581659-50581678 MsG0280009343.01.T01:CDS 45.0%
! CCGGTTTGAGGAAACTTATG+TGG + Chr2:50579343-50579362 None:intergenic 45.0%
! GCTTCCACCTGTTGGTTAAA+TGG - Chr2:50582068-50582087 MsG0280009343.01.T01:CDS 45.0%
! GGTGCAATTGGGTTTGAAGT+TGG - Chr2:50579169-50579188 MsG0280009343.01.T01:intron 45.0%
! GTGGATTGTTTGTGTGGTCA+CGG - Chr2:50578935-50578954 MsG0280009343.01.T01:intron 45.0%
! GTTAGGGATCCAAGGGTTTT+GGG - Chr2:50578788-50578807 MsG0280009343.01.T01:CDS 45.0%
! GTTGATTGCTTACGGTTTGG+AGG - Chr2:50579003-50579022 MsG0280009343.01.T01:intron 45.0%
! GTTGGAGCGGAAAACTTGTT+TGG - Chr2:50581376-50581395 MsG0280009343.01.T01:CDS 45.0%
! TGTTAAGGATTGGCGAAGGT+GGG + Chr2:50578291-50578310 None:intergenic 45.0%
! TGTTAGGGATCCAAGGGTTT+TGG - Chr2:50578787-50578806 MsG0280009343.01.T01:CDS 45.0%
! TTGTTAAGGATTGGCGAAGG+TGG + Chr2:50578292-50578311 None:intergenic 45.0%
!! AGAGGAAGTGGTTTTTGGAG+AGG + Chr2:50578253-50578272 None:intergenic 45.0%
!! CCATGCCTTCTCTTTTTGGT+TGG - Chr2:50581590-50581609 MsG0280009343.01.T01:CDS 45.0%
!! CCGAGCTTTGGAACAAATTC+TGG + Chr2:50581929-50581948 None:intergenic 45.0%
!! GAGGATTTTTGGAGAGGGTT+TGG - Chr2:50578883-50578902 MsG0280009343.01.T01:intron 45.0%
!! GGAACAAATTCTGGAATCCG+TGG + Chr2:50581920-50581939 None:intergenic 45.0%
!! TGCTTTGAAGGTGTTGTGGA+AGG - Chr2:50578973-50578992 MsG0280009343.01.T01:intron 45.0%
!! TTCACATCTTGACCGGTTTG+AGG + Chr2:50579355-50579374 None:intergenic 45.0%
!!! AGGGTTTTGGGAATGGAGAT+TGG - Chr2:50578800-50578819 MsG0280009343.01.T01:CDS 45.0%
!!! GGGTTTTGGGAATGGAGATT+GGG - Chr2:50578801-50578820 MsG0280009343.01.T01:CDS 45.0%
!!! GGTTTTGGGAATGGAGATTG+GGG - Chr2:50578802-50578821 MsG0280009343.01.T01:CDS 45.0%
!! ATGTTTATAAATAATAATAT+AGG - Chr2:50579973-50579992 MsG0280009343.01.T01:intron 5.0%
AAAAGCTATCTCAAGGGGGG+AGG - Chr2:50580938-50580957 MsG0280009343.01.T01:CDS 50.0%
AACAGCTTCCAAAGTCCAGC+TGG + Chr2:50579316-50579335 None:intergenic 50.0%
AGACTCTTCCAAAGCTGCTG+TGG + Chr2:50581101-50581120 None:intergenic 50.0%
AGCCAGTTGTCCATGGACAA+AGG + Chr2:50581455-50581474 None:intergenic 50.0%
AGCGGAGCAGTTAACGATAG+TGG - Chr2:50580131-50580150 MsG0280009343.01.T01:intron 50.0%
ATGACTGCATGGTGGCTGTA+CGG + Chr2:50580402-50580421 None:intergenic 50.0%
CCCAAAAGCTATCTCAAGGG+GGG - Chr2:50580935-50580954 MsG0280009343.01.T01:CDS 50.0%
CCCCAAAAGCTATCTCAAGG+GGG - Chr2:50580934-50580953 MsG0280009343.01.T01:CDS 50.0%
GACTCTTCCAAAGCTGCTGT+GGG + Chr2:50581100-50581119 None:intergenic 50.0%
GAGGAAATGGGGAAGAGAAG+AGG + Chr2:50578234-50578253 None:intergenic 50.0%
GATCCGTAGGGATGCTTTGA+AGG - Chr2:50578961-50578980 MsG0280009343.01.T01:intron 50.0%
GCAGGGAGGCAATTAAAGAG+AGG - Chr2:50578864-50578883 MsG0280009343.01.T01:CDS 50.0%
GGAGGTTGTTAGGGATCCAA+GGG - Chr2:50578781-50578800 MsG0280009343.01.T01:CDS 50.0%
GGGATGGATCCGAATTGAAG+AGG + Chr2:50578271-50578290 None:intergenic 50.0%
GGTTAAGGTCTTGGCTCAGT+TGG - Chr2:50581358-50581377 MsG0280009343.01.T01:CDS 50.0%
GTAAGCATCCAGCTGGACTT+TGG - Chr2:50579305-50579324 MsG0280009343.01.T01:intron 50.0%
TAGCGGGGATAGCTTATAGC+GGG + Chr2:50580873-50580892 None:intergenic 50.0%
TGGTCACGGTTTGATCCGTA+GGG - Chr2:50578949-50578968 MsG0280009343.01.T01:intron 50.0%
! AGGTGTTGTGGAAGGAACCA+AGG - Chr2:50578981-50579000 MsG0280009343.01.T01:intron 50.0%
! CAAGTTGGCGATCATCAACG+GGG + Chr2:50578450-50578469 None:intergenic 50.0%
! CCCCCCTTGAGATAGCTTTT+GGG + Chr2:50580938-50580957 None:intergenic 50.0%
! CCCCCTTGAGATAGCTTTTG+GGG + Chr2:50580937-50580956 None:intergenic 50.0%
! GCAGAGTTTGAAATGCAGGG+AGG - Chr2:50578850-50578869 MsG0280009343.01.T01:CDS 50.0%
! GGGTTGTTAAGGATTGGCGA+AGG + Chr2:50578295-50578314 None:intergenic 50.0%
! TCCCCCCTTGAGATAGCTTT+TGG + Chr2:50580939-50580958 None:intergenic 50.0%
! TCTCGCGCTATTGACTACGT+AGG + Chr2:50580055-50580074 None:intergenic 50.0%
! TGTCTTTGGCTTCCACCTGT+TGG - Chr2:50582060-50582079 MsG0280009343.01.T01:CDS 50.0%
!! AATTCTGGAATCCGTGGCAC+AGG + Chr2:50581914-50581933 None:intergenic 50.0%
!! CGGGGAAGCATTAGAAAGCT+TGG + Chr2:50578432-50578451 None:intergenic 50.0%
!! GGGATGCTTTGAAGGTGTTG+TGG - Chr2:50578969-50578988 MsG0280009343.01.T01:intron 50.0%
!!! GGATCCAAGGGTTTTGGGAA+TGG - Chr2:50578793-50578812 MsG0280009343.01.T01:CDS 50.0%
AAGCCAATGGACCTGTGCCA+CGG - Chr2:50581900-50581919 MsG0280009343.01.T01:CDS 55.0%
AATCCGTGGCACAGGTCCAT+TGG + Chr2:50581906-50581925 None:intergenic 55.0%
AGGTCTTGGCTCAGTTGGAG+CGG - Chr2:50581363-50581382 MsG0280009343.01.T01:CDS 55.0%
CCACCACAAGCAGTAGCTCA+TGG - Chr2:50579742-50579761 MsG0280009343.01.T01:intron 55.0%
CCATGAGCTACTGCTTGTGG+TGG + Chr2:50579745-50579764 None:intergenic 55.0%
CGGAGGTTGTTAGGGATCCA+AGG - Chr2:50578780-50578799 MsG0280009343.01.T01:CDS 55.0%
GATGGATCCCACAGCAGCTT+TGG - Chr2:50581090-50581109 MsG0280009343.01.T01:CDS 55.0%
GTGGTCACGGTTTGATCCGT+AGG - Chr2:50578948-50578967 MsG0280009343.01.T01:intron 55.0%
TAGCGGCAGAGTGGAGTAGA+GGG - Chr2:50580086-50580105 MsG0280009343.01.T01:intron 55.0%
! AAGGATTGGCGAAGGTGGGA+TGG + Chr2:50578287-50578306 None:intergenic 55.0%
! GTTTTCCAGCCGAGAGGTCA+GGG - Chr2:50578757-50578776 MsG0280009343.01.T01:CDS 55.0%
! TTAACGATAGTGGCCGCTCC+AGG - Chr2:50580141-50580160 MsG0280009343.01.T01:intron 55.0%
!! TTTGGGGTTTTCCAGCCGAG+AGG - Chr2:50578751-50578770 MsG0280009343.01.T01:CDS 55.0%
ACTCCACTCTGCCGCTACAG+CGG + Chr2:50580083-50580102 None:intergenic 60.0%
AGAGGGTCGCCGCTACAATG+AGG - Chr2:50580103-50580122 MsG0280009343.01.T01:intron 60.0%
AGGTCAGGGCGGAGGTTGTT+AGG - Chr2:50578771-50578790 MsG0280009343.01.T01:CDS 60.0%
AGGTGAGATCTTGGCGGAGC+GGG - Chr2:50580161-50580180 MsG0280009343.01.T01:intron 60.0%
CAGGTGAGATCTTGGCGGAG+CGG - Chr2:50580160-50580179 MsG0280009343.01.T01:intron 60.0%
CATGGTGGCTGTACGGCGAT+GGG + Chr2:50580395-50580414 None:intergenic 60.0%
CGCCAAGATCTCACCTGGAG+CGG + Chr2:50580157-50580176 None:intergenic 60.0%
CGCTCCAGGTGAGATCTTGG+CGG - Chr2:50580155-50580174 MsG0280009343.01.T01:intron 60.0%
GGTCAGGGCGGAGGTTGTTA+GGG - Chr2:50578772-50578791 MsG0280009343.01.T01:CDS 60.0%
GTAGCGGCAGAGTGGAGTAG+AGG - Chr2:50580085-50580104 MsG0280009343.01.T01:intron 60.0%
! GGTTTTCCAGCCGAGAGGTC+AGG - Chr2:50578756-50578775 MsG0280009343.01.T01:CDS 60.0%
CAACCTCCGCCCTGACCTCT+CGG + Chr2:50578769-50578788 None:intergenic 65.0%
CGCTCCGCCAAGATCTCACC+TGG + Chr2:50580162-50580181 None:intergenic 65.0%
GCATGGTGGCTGTACGGCGA+TGG + Chr2:50580396-50580415 None:intergenic 65.0%
GCGAGATAGCGCCGCTGTAG+CGG - Chr2:50580069-50580088 MsG0280009343.01.T01:intron 65.0%
GGCCGCTCCAGGTGAGATCT+TGG - Chr2:50580152-50580171 MsG0280009343.01.T01:intron 65.0%
GGTGAGATCTTGGCGGAGCG+GGG - Chr2:50580162-50580181 MsG0280009343.01.T01:intron 65.0%
TTCCAGCCGAGAGGTCAGGG+CGG - Chr2:50578760-50578779 MsG0280009343.01.T01:CDS 65.0%
CAGCCGAGAGGTCAGGGCGG+AGG - Chr2:50578763-50578782 MsG0280009343.01.T01:CDS 75.0%
CTCCGCCCTGACCTCTCGGC+TGG + Chr2:50578765-50578784 None:intergenic 75.0%
GCGCCGCTGTAGCGGCAGAG+TGG - Chr2:50580077-50580096 MsG0280009343.01.T01:intron 75.0%
! GCGGAGCGGGGTCGCAGAGC+AGG - Chr2:50580174-50580193 MsG0280009343.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr2 gene 50578062 50582187 50578062 ID=MsG0280009343.01;Name=MsG0280009343.01
Chr2 mRNA 50578062 50582187 50578062 ID=MsG0280009343.01.T01;Parent=MsG0280009343.01;Name=MsG0280009343.01.T01;_AED=0.37;_eAED=0.44;_QI=0|0|0|0.75|1|1|4|0|626
Chr2 exon 50580845 50582187 50580845 ID=MsG0280009343.01.T01:exon:6452;Parent=MsG0280009343.01.T01
Chr2 exon 50580406 50580602 50580406 ID=MsG0280009343.01.T01:exon:6451;Parent=MsG0280009343.01.T01
Chr2 exon 50578744 50578884 50578744 ID=MsG0280009343.01.T01:exon:6450;Parent=MsG0280009343.01.T01
Chr2 exon 50578062 50578261 50578062 ID=MsG0280009343.01.T01:exon:6449;Parent=MsG0280009343.01.T01
Chr2 CDS 50580845 50582187 50580845 ID=MsG0280009343.01.T01:cds;Parent=MsG0280009343.01.T01
Chr2 CDS 50580406 50580602 50580406 ID=MsG0280009343.01.T01:cds;Parent=MsG0280009343.01.T01
Chr2 CDS 50578744 50578884 50578744 ID=MsG0280009343.01.T01:cds;Parent=MsG0280009343.01.T01
Chr2 CDS 50578062 50578261 50578062 ID=MsG0280009343.01.T01:cds;Parent=MsG0280009343.01.T01
Gene Sequence

>MsG0280009343.01.T01

ATGGGGTTGGGTTCCACCATAGTCAGAAAAAGAAACAACGTCCTTATTCTTGTAAGAACCACTTCTTCAACTAATAACAACTACTTCTCCACCATTTCTAATCCACCTACATCTCATTACAGAAAACAAATCACTCTCGCTAATCTCTTCCAATCCTTCGGTTTTCCTTCCTCTTCTCTTCCCCATTTCCTCTCCAAAAACCACTTCCTCTTCAATTCGGATCCATCCCACCTTCGCCAATCCTTAACAACCCTCTTTTCCTTCAAAATTCCACAGAAAAACCTAATTTCACTTCTTCAAGATTGCCCTTCTGTGTTGGAACCTCAATTTCTACTTAATTGGGAATTGGGTTTTCCAAAATTCATATCCAAGCTTTCTAATGCTTCCCCGTTGATGATCGCCAACTTGTTGAGTTGTTCTACAACTTTCCATTTAAACCCACTTGAAATTTCCCGTAAAGTTGAAATTTTTAGGGGTTTAGGATTTTCTGATGATGTTTTATTAAGGGTTTTGGAGGAATTTCCCATTGCAGTTGTAATGGGGGAAACTCAAATTGTTGGTGTCGTTAATTTTCTTATGGAATTTGGGGTTCCTAAGGATGAAATTGATAGGGTTGTTAGATTGTTTCCTAGGGTTTTGGGATTTGGAATTGAGGATAGGTTGAAGCTGTTGATTCATGAGTTGAGGAGTTTGGGGTTTTCCAGCCGAGAGGTCAGGGCGGAGGTTGTTAGGGATCCAAGGGTTTTGGGAATGGAGATTGGGGAATTTTCACGGTATTTGAAGTTGTTGCAGAGTTTGAAATGCAGGGAGGCAATTAAAGAGAGGATTTTTGGAGAGGGTTTGGTTAGGGCTTGTTTTGAAGTGAAGTTGAGAGTGGATTGTTTGTGTGGTCACGGTTTGATCCGTAGGGATGCTTTGAAGGTGTTGTGGAAGGAACCAAGGTTGATTGCTTACGGTTTGGAGGATATTGAAAAGAAGATTGAGTTTTTAATCCAAAGGATGAAATATGGTGTTGATTGTTTGCATGAAGTTCCTTCATACTTAGGTGTGAATTTTGATAAACAGATTGTTCCTAGATACAATGTGATTGAGTATTTGAAAGGAAAAGGTGCAATTGGGTTTGAAGTTGGATTGAAGGACATCATCAAACCAACTAGGCTTAGATTTTACAATCTTTACGTTAAGCCTTATCCAGAATGTGAAAAAATATATGGGAGATTTTCGGGTAAGGTCGAAGTTAAAAGTAAGCATCCAGCTGGACTTTGGAAGCTGTTCCAACCACATAAGTTTCCTCAAACCGGTCAAGATGTGAAGAACATGAAGGCTTTCATGGATTCAATGCTCCAAATCTGTGAATTCGCATGTTCAGATACTCAAAAAGTTAAACGTCTGCAGATAGAAGACAAGAATTATAAAAATGTTAGTGGAAAAACTTCAACCACCACAAGCAGTAGCTCATGGAATGTTTGGAACAGTAGAGTTGAGGCCATTAGGGAGTTACATCATTCATTAGTTGGGGATGTTGTTGATACTCAACAGTGTCTTGGCTCAGTTGGAGCGGAAAACTTGTTTGGAGTTTATAAAGAATGGGTACTTCAATGCCATGACTTGAAATTTATATCAACTTCCTTTGTCCATGGACAACTGGCTAAAGTTAGGGAAGGAAAAAAAGTAAACTCGGGGACAAAATGTGCCGATGAATCTTTTATGAAGGAACTAATTCATTTAAGACAGAAGGATTTTGATACTGAAATGTCTTTGGCTTCCACCTGTTGGTTAAATGGAATGATCAATATTATTACTGAAATTGATAATCTGATACGTTCTGCCAAGACTGTATTTGTTGTCCTCTCCCAAGCGAATAATCAAAAGAAGGAATAG
Protein sequence

>MsG0280009343.01.T01

MGLGSTIVRKRNNVLILVRTTSSTNNNYFSTISNPPTSHYRKQITLANLFQSFGFPSSSLPHFLSKNHFLFNSDPSHLRQSLTTLFSFKIPQKNLISLLQDCPSVLEPQFLLNWELGFPKFISKLSNASPLMIANLLSCSTTFHLNPLEISRKVEIFRGLGFSDDVLLRVLEEFPIAVVMGETQIVGVVNFLMEFGVPKDEIDRVVRLFPRVLGFGIEDRLKLLIHELRSLGFSSREVRAEVVRDPRVLGMEIGEFSRYLKLLQSLKCREAIKERIFGEGLVRACFEVKLRVDCLCGHGLIRRDALKVLWKEPRLIAYGLEDIEKKIEFLIQRMKYGVDCLHEVPSYLGVNFDKQIVPRYNVIEYLKGKGAIGFEVGLKDIIKPTRLRFYNLYVKPYPECEKIYGRFSGKVEVKSKHPAGLWKLFQPHKFPQTGQDVKNMKAFMDSMLQICEFACSDTQKVKRLQIEDKNYKNVSGKTSTTTSSSSWNVWNSRVEAIRELHHSLVGDVVDTQQCLGSVGAENLFGVYKEWVLQCHDLKFISTSFVHGQLAKVREGKKVNSGTKCADESFMKELIHLRQKDFDTEMSLASTCWLNGMINIITEIDNLIRSAKTVFVVLSQANNQKKE*