AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023659.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023659.01.T01 MTR_8g098605 74.686 636 113 6 1 628 1 596 0.0 941
MsG0480023659.01.T01 MTR_1g073380 69.304 632 144 9 1 622 1 592 0.0 842
MsG0480023659.01.T01 MTR_1g073590 68.196 632 138 11 1 622 1 579 0.0 806
MsG0480023659.01.T01 MTR_1g073530 67.563 632 145 9 1 622 1 582 0.0 804
MsG0480023659.01.T01 MTR_8g098645 90.778 347 26 1 282 628 6 346 0.0 655
MsG0480023659.01.T01 MTR_8g098655 98.058 309 6 0 1 309 1 309 0.0 630
MsG0480023659.01.T01 MTR_8g098635 85.427 199 29 0 430 628 99 297 1.33e-119 357
MsG0480023659.01.T01 MTR_8g098635 75.758 99 24 0 249 347 1 99 2.73e-42 155
MsG0480023659.01.T01 MTR_8g098635 85.427 199 29 0 430 628 182 380 4.50e-118 357
MsG0480023659.01.T01 MTR_8g098635 75.893 112 27 0 236 347 71 182 2.52e-48 174
MsG0480023659.01.T01 MTR_6g071350 53.846 364 85 7 166 527 92 374 1.78e-106 327
MsG0480023659.01.T01 MTR_6g071350 73.171 41 11 0 588 628 361 401 5.33e-12 68.6
MsG0480023659.01.T01 MTR_5g048010 50.568 352 96 8 174 522 8 284 4.67e-81 258
MsG0480023659.01.T01 MTR_5g048010 75.610 41 10 0 588 628 276 316 1.36e-12 69.7
MsG0480023659.01.T01 MTR_1g073430 74.667 150 37 1 76 224 14 163 1.31e-70 226
MsG0480023659.01.T01 MTR_7g078120 37.076 383 180 9 234 609 243 571 5.09e-68 233
MsG0480023659.01.T01 MTR_7g078120 57.377 61 26 0 60 120 1 61 4.14e-12 69.7
MsG0480023659.01.T01 MTR_7g078120 37.076 383 180 9 234 609 243 571 1.48e-67 233
MsG0480023659.01.T01 MTR_7g078120 57.377 61 26 0 60 120 1 61 4.71e-12 69.3
MsG0480023659.01.T01 MTR_0259s0060 57.065 184 32 1 420 603 11 147 9.98e-61 200
MsG0480023659.01.T01 MTR_8g028905 52.000 175 80 3 425 595 408 582 3.01e-50 184
MsG0480023659.01.T01 MTR_6g012370 68.254 126 33 2 1 119 1 126 6.56e-48 164
MsG0480023659.01.T01 MTR_1g073420 79.710 69 14 0 554 622 60 128 2.05e-32 122
MsG0480023659.01.T01 MTR_6g071355 62.105 95 17 1 516 610 1 76 5.23e-30 113
MsG0480023659.01.T01 MTR_7g066890 38.012 171 98 2 424 588 193 361 8.56e-29 118
MsG0480023659.01.T01 MTR_7g066890 38.012 171 98 2 424 588 295 463 4.80e-28 118
MsG0480023659.01.T01 MTR_3g023780 39.891 183 95 6 423 593 147 326 1.16e-25 111
MsG0480023659.01.T01 MTR_1g069600 80.000 60 12 0 77 136 26 85 3.58e-25 100
MsG0480023659.01.T01 MTR_7g066880 30.387 181 118 2 414 588 175 353 6.03e-20 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023659.01.T01 AT4G11400 34.522 617 327 17 26 627 19 573 7.28e-98 311
MsG0480023659.01.T01 AT4G11400 34.522 617 327 17 26 627 19 573 7.28e-98 311
MsG0480023659.01.T01 AT2G46040 46.199 171 88 3 427 594 362 531 1.36e-39 153
MsG0480023659.01.T01 AT2G46040 26.603 312 198 7 35 336 47 337 3.73e-21 98.2
MsG0480023659.01.T01 AT2G46040 46.199 171 88 3 427 594 362 531 1.36e-39 153
MsG0480023659.01.T01 AT2G46040 26.603 312 198 7 35 336 47 337 3.73e-21 98.2
MsG0480023659.01.T01 AT2G46040 46.199 171 88 3 427 594 376 545 1.87e-39 153
MsG0480023659.01.T01 AT2G46040 26.603 312 198 7 35 336 61 351 4.10e-21 98.2
MsG0480023659.01.T01 AT5G04110 39.130 161 86 4 425 574 362 521 4.96e-27 116
MsG0480023659.01.T01 AT5G04110 39.130 161 86 4 425 574 361 520 5.02e-27 116
MsG0480023659.01.T01 AT5G04110 39.130 161 86 4 425 574 361 520 5.02e-27 116
MsG0480023659.01.T01 AT2G03470 34.896 192 102 6 423 599 121 304 1.69e-21 98.2
MsG0480023659.01.T01 AT2G03470 34.896 192 102 6 423 599 120 303 1.69e-21 98.2
MsG0480023659.01.T01 AT1G13880 35.359 181 103 4 423 593 127 303 2.24e-21 97.8
MsG0480023659.01.T01 AT1G13880 35.359 181 103 4 423 593 126 302 2.33e-21 97.4
MsG0480023659.01.T01 AT1G13880 35.359 181 103 4 423 593 136 312 2.81e-21 97.4
MsG0480023659.01.T01 AT1G26580 31.429 210 124 5 418 609 62 269 8.25e-21 95.9
MsG0480023659.01.T01 AT1G26580 31.429 210 124 5 418 609 128 335 1.40e-20 95.9
MsG0480023659.01.T01 AT1G26580 31.429 210 124 5 418 609 128 335 1.40e-20 95.9
MsG0480023659.01.T01 AT5G04110 37.241 145 79 4 425 558 361 504 2.51e-19 92.0

Find 122 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCCTCCCATTTGTTATTT+TGG 0.062612 4:-88185917 None:intergenic
CAAGAGTGATGGTTATTTAT+TGG 0.189535 4:+88185884 MsG0480023659.01.T01:CDS
TCATTGGGGATTTGATAAAA+TGG 0.191990 4:+88189600 MsG0480023659.01.T01:CDS
TATCATCACCGTCAACATTT+TGG 0.205466 4:-88185941 None:intergenic
CCTTTAGATTTGAGCATAAA+AGG 0.207974 4:-88185794 None:intergenic
TTCTTCCTTGTGAAGGAAAA+AGG 0.229657 4:+88185552 MsG0480023659.01.T01:CDS
GATGATGACGAAGTTGAATT+TGG 0.250331 4:+88189841 MsG0480023659.01.T01:CDS
TTATACTCCTTCCACCTTGA+TGG 0.254585 4:-88186146 None:intergenic
CTTTGCTGCAATTCATGTTC+TGG 0.273535 4:+88189112 MsG0480023659.01.T01:CDS
TGATGAAGAAAAGAGATTTA+AGG 0.278264 4:+88189651 MsG0480023659.01.T01:CDS
TGCCTTGTTTCGAAAGTATC+TGG 0.279788 4:-88189728 None:intergenic
CACCTTGATGGTTCTGGTAA+TGG 0.297194 4:-88186134 None:intergenic
CACTCCAAGCAATCCATATA+TGG 0.312317 4:-88189904 None:intergenic
ACAAGATCTGTTTCGGTAGT+AGG 0.317915 4:-88189460 None:intergenic
TTTCTCTTCTCAGTTGCATC+TGG 0.327601 4:-88189247 None:intergenic
CTCTACTACAATTCTCCTTT+AGG 0.334096 4:-88185467 None:intergenic
CTTCTCAGTTGCATCTGGTT+TGG 0.334667 4:-88189242 None:intergenic
GAGAAAATCTGAGCCATCTA+TGG 0.335639 4:+88189300 MsG0480023659.01.T01:CDS
ATAATTCTCGCAAACGTAAA+CGG 0.342533 4:+88186042 MsG0480023659.01.T01:CDS
TCCTTCCACCTTGATGGTTC+TGG 0.342765 4:-88186140 None:intergenic
TTTCTGAGAGTGACTCTAAA+TGG 0.355739 4:+88189398 MsG0480023659.01.T01:CDS
TTCAGTGACGACGTCTGGTT+TGG 0.357587 4:-88189203 None:intergenic
AGCTATCAAGCATCCATATA+TGG 0.363115 4:+88189891 MsG0480023659.01.T01:CDS
CGTCTAGACGCTGAATTTCA+TGG 0.372748 4:+88185360 MsG0480023659.01.T01:CDS
CGTAAACGGGAATCGATATC+AGG 0.372781 4:+88186056 MsG0480023659.01.T01:CDS
AATGGTTAGGCACACAAGTA+TGG 0.373689 4:+88189416 MsG0480023659.01.T01:CDS
GAAGTTGAATTTGGATCTTT+TGG 0.375334 4:+88189850 MsG0480023659.01.T01:CDS
CATTGGGGATTTGATAAAAT+GGG 0.380212 4:+88189601 MsG0480023659.01.T01:CDS
ATTGCACGGTTCAGTCAATA+TGG 0.388593 4:+88189147 MsG0480023659.01.T01:CDS
GGATTCTGTGATAATTGAAA+TGG 0.394907 4:+88185608 MsG0480023659.01.T01:CDS
TGATGTTACTTGATTCTAAC+GGG 0.404597 4:-88185836 None:intergenic
CGAAAATCATCATCCATAGA+TGG 0.407291 4:-88189313 None:intergenic
CTGCAATTCATGTTCTGGTA+AGG 0.408572 4:+88189117 MsG0480023659.01.T01:CDS
GACGCTGAATTTCATGGAAC+CGG 0.412938 4:+88185366 MsG0480023659.01.T01:CDS
TAATTCTCGCAAACGTAAAC+GGG 0.414761 4:+88186043 MsG0480023659.01.T01:CDS
GCGGTTGTATTGTTGAGTAT+CGG 0.417639 4:+88185388 MsG0480023659.01.T01:CDS
TCTCCCAACAAGATCTGTTT+CGG 0.428135 4:-88189467 None:intergenic
TCTGGTAATGGTGGAGCTAC+AGG 0.429826 4:-88186122 None:intergenic
CTAATTACCAAAATAACAAA+TGG 0.432389 4:+88185910 MsG0480023659.01.T01:CDS
GATTTCATATTGCTGAGAAC+AGG 0.435888 4:+88189542 MsG0480023659.01.T01:CDS
TTGTTCAGTTGCTGAGGGCA+AGG 0.439451 4:+88186186 MsG0480023659.01.T01:CDS
CCGGAACTTCCGCTTGGAAA+AGG 0.440137 4:-88189360 None:intergenic
GAAACTACACCAGTCCATTC+CGG 0.442162 4:-88189379 None:intergenic
TGGGAAGATGATCCACCATT+TGG 0.442630 4:-88186239 None:intergenic
TCAAGGTGGAAGGAGTATAA+AGG 0.452997 4:+88186149 MsG0480023659.01.T01:CDS
CGGTTGTATTGTTGAGTATC+GGG 0.454653 4:+88185389 MsG0480023659.01.T01:CDS
CTACCGAAACAGATCTTGTT+GGG 0.462379 4:+88189464 MsG0480023659.01.T01:CDS
CGATATCAGGAATGGTGAAC+TGG 0.466029 4:+88186069 MsG0480023659.01.T01:CDS
AGTCAGACGTTCATGGCAAA+CGG 0.467323 4:+88185324 None:intergenic
GCATCCATATATGGATTGCT+TGG 0.469079 4:+88189900 MsG0480023659.01.T01:CDS
CGGTATCGAGAAAAGGGTTG+TGG 0.472038 4:+88185586 MsG0480023659.01.T01:CDS
CGTGAAAAGCTTGTTTCTGT+AGG 0.477267 4:+88189334 MsG0480023659.01.T01:CDS
TCATCGCTGTCAACAGTCTT+CGG 0.477687 4:-88189823 None:intergenic
TCTCCGAGCATCACCGGCAT+TGG 0.482085 4:-88185501 None:intergenic
TATGATGCGGTATCGAGAAA+AGG 0.483215 4:+88185579 MsG0480023659.01.T01:CDS
GATTCTGTGATAATTGAAAT+GGG 0.484845 4:+88185609 MsG0480023659.01.T01:CDS
GTCAGACGTTCATGGCAAAC+GGG 0.485222 4:+88185325 None:intergenic
GAGAGTGACTCTAAATGGTT+AGG 0.492462 4:+88189403 MsG0480023659.01.T01:CDS
CAGCGAGATTTAACAGAGAC+AGG 0.494477 4:-88189088 None:intergenic
AAGTGTAGCTGCAACGTTCA+AGG 0.494639 4:+88189502 MsG0480023659.01.T01:CDS
TGTTCAGTTGCTGAGGGCAA+GGG 0.496056 4:+88186187 MsG0480023659.01.T01:CDS
GGAGTCAGAAATATGTCCTC+TGG 0.498373 4:+88189168 MsG0480023659.01.T01:CDS
ACTACCGAAACAGATCTTGT+TGG 0.499677 4:+88189463 MsG0480023659.01.T01:CDS
TCCATTCCGGAACTTCCGCT+TGG 0.513689 4:-88189366 None:intergenic
GTGAGGAAGTTTCACTTCGA+TGG 0.516591 4:+88189623 MsG0480023659.01.T01:CDS
ATGCCGGTGATGCTCGGAGA+TGG 0.521994 4:+88185504 MsG0480023659.01.T01:CDS
TAATTACCAAAATAACAAAT+GGG 0.533109 4:+88185911 MsG0480023659.01.T01:CDS
ATGATGTTACTTGATTCTAA+CGG 0.535061 4:-88185837 None:intergenic
TTGTTTCGAAAGTATCTGGA+TGG 0.538515 4:-88189724 None:intergenic
GGTGGAGCTACAGGATCAAA+CGG 0.540327 4:-88186113 None:intergenic
ATCTCAATTTCACTGTACCT+TGG 0.540348 4:-88189051 None:intergenic
CTCAGAGATTTCCACACAAG+AGG 0.541018 4:-88186012 None:intergenic
GCGGAAGTTCCGGAATGGAC+TGG 0.543878 4:+88189370 MsG0480023659.01.T01:CDS
AGGCCAATGCCGGTGATGCT+CGG 0.544289 4:+88185498 MsG0480023659.01.T01:CDS
TCAACTGTTCTTCCTTGTGA+AGG 0.544693 4:+88185545 MsG0480023659.01.T01:CDS
GGGATTTGATAAAATGGGTG+AGG 0.544818 4:+88189606 MsG0480023659.01.T01:CDS
TCACGGATGCCAAAACATGA+AGG 0.545005 4:-88185638 None:intergenic
TGCAATTCATGTTCTGGTAA+GGG 0.545401 4:+88189118 MsG0480023659.01.T01:CDS
GGACCATCTCCGAGCATCAC+CGG 0.547780 4:-88185507 None:intergenic
AAAATTCGGCAATGGTGTTG+AGG 0.550666 4:+88185977 MsG0480023659.01.T01:CDS
ATGATGCGGTATCGAGAAAA+GGG 0.552445 4:+88185580 MsG0480023659.01.T01:CDS
ATAAATAACCATCACTCTTG+TGG 0.553747 4:-88185881 None:intergenic
GAAGGAGTATAAAGGAGGCC+AGG 0.557635 4:+88186157 MsG0480023659.01.T01:CDS
TTGTGTGGAAATCTCTGAGA+AGG 0.561286 4:+88186016 MsG0480023659.01.T01:CDS
CACCATTACCAGAACCATCA+AGG 0.561316 4:+88186132 MsG0480023659.01.T01:CDS
GGTATCGAGAAAAGGGTTGT+GGG 0.561504 4:+88185587 MsG0480023659.01.T01:CDS
TGTTCTGTCTGTGAGAAAGC+AGG 0.562735 4:+88186211 MsG0480023659.01.T01:CDS
TCCAAGCGGAAGTTCCGGAA+TGG 0.566498 4:+88189365 MsG0480023659.01.T01:CDS
AGGCATTGTGAGGCCAATGC+CGG 0.566829 4:+88185488 MsG0480023659.01.T01:CDS
GATGCATCCTGCCATGTATG+AGG 0.570606 4:+88189009 MsG0480023659.01.T01:CDS
TACCAAAATAACAAATGGGA+GGG 0.570891 4:+88185915 MsG0480023659.01.T01:CDS
ATTCAGCGTCTAGACGATCA+AGG 0.572295 4:-88185353 None:intergenic
CAGGAATGGTGAACTGGACA+CGG 0.572522 4:+88186075 MsG0480023659.01.T01:CDS
CTTGATGGTTCTGGTAATGG+TGG 0.573107 4:-88186131 None:intergenic
TTTGTTAACCACAAGAGTGA+TGG 0.575780 4:+88185873 MsG0480023659.01.T01:CDS
TGAAATTGAGATATAGTGAA+AGG 0.576187 4:+88189062 MsG0480023659.01.T01:CDS
ACATGATCCTCATACATGGC+AGG 0.576377 4:-88189016 None:intergenic
GGTAAGGGAAATAAATTGCA+CGG 0.586625 4:+88189133 MsG0480023659.01.T01:CDS
AAATGGTGGATCATCTTCCC+AGG 0.587670 4:+88186241 MsG0480023659.01.T01:CDS
ATCCAGATACTTTCGAAACA+AGG 0.591847 4:+88189726 MsG0480023659.01.T01:CDS
TTATCTAGCTGCCTCTTGTG+TGG 0.597731 4:+88186001 MsG0480023659.01.T01:CDS
ACGGGAATCGATATCAGGAA+TGG 0.603553 4:+88186061 MsG0480023659.01.T01:CDS
CTAAAGGAGAATTGTAGTAG+AGG 0.604171 4:+88185468 MsG0480023659.01.T01:CDS
AGCAACATGATCCTCATACA+TGG 0.604798 4:-88189020 None:intergenic
ACCAGAACCATCAAGGTGGA+AGG 0.609801 4:+88186139 MsG0480023659.01.T01:CDS
TTACCAAAATAACAAATGGG+AGG 0.613410 4:+88185914 MsG0480023659.01.T01:CDS
GAGGGTGTCCAAAATGTTGA+CGG 0.617850 4:+88185933 MsG0480023659.01.T01:CDS
TCAGCAAAACATTCGAAGAG+AGG 0.626443 4:+88185703 MsG0480023659.01.T01:CDS
AGAAAGCAGGCTGAACCAAA+TGG 0.632421 4:+88186224 MsG0480023659.01.T01:CDS
GAAACAGATCTTGTTGGGAG+AGG 0.634208 4:+88189469 MsG0480023659.01.T01:CDS
CTTGTTGGGAGAGGAAGACG+AGG 0.636192 4:+88189478 MsG0480023659.01.T01:CDS
AGTTGATATAAATCAAGCAA+CGG 0.651746 4:-88185528 None:intergenic
AAGCAGGCTGAACCAAATGG+TGG 0.656382 4:+88186227 MsG0480023659.01.T01:CDS
ATACTCAACAATACAACCGC+CGG 0.658907 4:-88185385 None:intergenic
AGAGATTTAAGGATGCAATG+AGG 0.659010 4:+88189662 MsG0480023659.01.T01:CDS
AAACAAGGCAAGAAAAGACA+TGG 0.666046 4:+88189741 MsG0480023659.01.T01:CDS
GCTGAATTTCATGGAACCGG+CGG 0.668189 4:+88185369 MsG0480023659.01.T01:CDS
CATGTTGCTCTTAGTCACCA+AGG 0.670434 4:+88189034 MsG0480023659.01.T01:CDS
AAATCCCCAATGATAAAACA+CGG 0.674548 4:-88189590 None:intergenic
AGGTGGAAGGAGTATAAAGG+AGG 0.679711 4:+88186152 MsG0480023659.01.T01:CDS
ATTGTAGTAGAGGCATTGTG+AGG 0.687619 4:+88185478 MsG0480023659.01.T01:CDS
CATTACCAGAACCATCAAGG+TGG 0.750119 4:+88186135 MsG0480023659.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCCTGTATAAAATAATTA+TGG - Chr4:88186280-88186299 None:intergenic 15.0%
!! TAATTACCAAAATAACAAAT+GGG + Chr4:88185911-88185930 MsG0480023659.01.T01:CDS 15.0%
!!! AAAAATACCATATTTTTGTT+TGG + Chr4:88187307-88187326 MsG0480023659.01.T01:intron 15.0%
!!! TTTGTTTTGTCAAATTTTTT+CGG + Chr4:88185440-88185459 MsG0480023659.01.T01:CDS 15.0%
!!! TTTTTCATAAACTAATTTCA+CGG - Chr4:88185658-88185677 None:intergenic 15.0%
!! ATAATAAATTAGTAATGTCC+AGG + Chr4:88187731-88187750 MsG0480023659.01.T01:intron 20.0%
!! CATTAATAATGTCTAATGAT+AGG + Chr4:88188187-88188206 MsG0480023659.01.T01:intron 20.0%
!! CATTAGACATTATTAATGAT+AGG - Chr4:88188185-88188204 None:intergenic 20.0%
!! CTAATTACCAAAATAACAAA+TGG + Chr4:88185910-88185929 MsG0480023659.01.T01:CDS 20.0%
!! CTTGATTCTAAGTTATTTAT+AGG - Chr4:88187641-88187660 None:intergenic 20.0%
!! TATGTAACCAAACAAAAATA+TGG - Chr4:88187317-88187336 None:intergenic 20.0%
!! TTTATTTATCAAGTGTTATG+TGG + Chr4:88188938-88188957 MsG0480023659.01.T01:intron 20.0%
!!! AATTCTTTTTCTAGATCTAT+CGG - Chr4:88185768-88185787 None:intergenic 20.0%
!!! ATGCCATAATTATTTTATAC+AGG + Chr4:88186274-88186293 MsG0480023659.01.T01:intron 20.0%
!!! TAAGAAAAGATTCCTTTTTT+AGG + Chr4:88186511-88186530 MsG0480023659.01.T01:intron 20.0%
! AAATCCATAAAAGTGACTAA+TGG - Chr4:88188740-88188759 None:intergenic 25.0%
! AACTTAAAGACAAGTTCAAA+AGG - Chr4:88187994-88188013 None:intergenic 25.0%
! AATATGAATCTCGATTCATT+GGG + Chr4:88186936-88186955 MsG0480023659.01.T01:intron 25.0%
! AATTGAATAGTTAGAGGTAA+AGG - Chr4:88188266-88188285 None:intergenic 25.0%
! ATAATATAACATACTCCATC+CGG + Chr4:88186479-88186498 MsG0480023659.01.T01:intron 25.0%
! ATGTAGTCAATCATATCATA+AGG - Chr4:88188142-88188161 None:intergenic 25.0%
! ATTGAATAGTTAGAGGTAAA+GGG - Chr4:88188265-88188284 None:intergenic 25.0%
! ATTTGTATAAAACACAGGAA+AGG + Chr4:88188756-88188775 MsG0480023659.01.T01:intron 25.0%
! CAAGATTTAAACTGTGAATT+CGG - Chr4:88187389-88187408 None:intergenic 25.0%
! CATTGAATAATTAACGTATC+TGG - Chr4:88186575-88186594 None:intergenic 25.0%
! CTATAACCTAAATTATCAGA+AGG - Chr4:88188229-88188248 None:intergenic 25.0%
! GAACATGTTAACAAATAAAC+AGG - Chr4:88187798-88187817 None:intergenic 25.0%
! GATTCTGTGATAATTGAAAT+GGG + Chr4:88185609-88185628 MsG0480023659.01.T01:CDS 25.0%
! TAACATGTTCAACTTGAATT+GGG + Chr4:88187808-88187827 MsG0480023659.01.T01:intron 25.0%
! TATGGATTTGTATAAAACAC+AGG + Chr4:88188751-88188770 MsG0480023659.01.T01:intron 25.0%
! TATTCAATTACCGTCTATAT+GGG + Chr4:88188277-88188296 MsG0480023659.01.T01:intron 25.0%
! TCAAATCCTTCTGATAATTT+AGG + Chr4:88188220-88188239 MsG0480023659.01.T01:intron 25.0%
! TCAACAAAAGAAAGATATCA+TGG + Chr4:88186712-88186731 MsG0480023659.01.T01:intron 25.0%
! TGAAATTGAGATATAGTGAA+AGG + Chr4:88189062-88189081 MsG0480023659.01.T01:CDS 25.0%
! TGAATCTGATTATGAATCAT+CGG - Chr4:88187341-88187360 None:intergenic 25.0%
! TGATATCAAAACATTGAGAA+AGG + Chr4:88188881-88188900 MsG0480023659.01.T01:intron 25.0%
! TGATGAAGAAAAGAGATTTA+AGG + Chr4:88189651-88189670 MsG0480023659.01.T01:CDS 25.0%
! TGTAGTCAATCATATCATAA+GGG - Chr4:88188141-88188160 None:intergenic 25.0%
! TTAACATGTTCAACTTGAAT+TGG + Chr4:88187807-88187826 MsG0480023659.01.T01:intron 25.0%
! TTAATCGATGAACCTAAAAA+AGG - Chr4:88186526-88186545 None:intergenic 25.0%
! TTATGATATGATTGACTACA+TGG + Chr4:88188141-88188160 MsG0480023659.01.T01:intron 25.0%
!! AAATATCTGAGTGATTTTGA+AGG + Chr4:88185675-88185694 MsG0480023659.01.T01:CDS 25.0%
!! AAGTTAAGTTCTAATGCAAA+AGG - Chr4:88187583-88187602 None:intergenic 25.0%
!! AATTTAGGGTTACAAAAGTT+AGG - Chr4:88187762-88187781 None:intergenic 25.0%
!! ACTTTTCTTATATATGAGAC+CGG + Chr4:88186610-88186629 MsG0480023659.01.T01:intron 25.0%
!! AGTTGATATAAATCAAGCAA+CGG - Chr4:88185531-88185550 None:intergenic 25.0%
!! ATGATGTTACTTGATTCTAA+CGG - Chr4:88185840-88185859 None:intergenic 25.0%
!! TCTTTTCTTATATATGAGAC+CGG - Chr4:88186501-88186520 None:intergenic 25.0%
!! TTATACAGGATTTTACACAT+TGG + Chr4:88186288-88186307 MsG0480023659.01.T01:intron 25.0%
!! TTCTCTTTTCAGTAATATCT+GGG - Chr4:88189285-88189304 None:intergenic 25.0%
!! TTTCTCTTTTCAGTAATATC+TGG - Chr4:88189286-88189305 None:intergenic 25.0%
!!! AATTCCATTAGTCACTTTTA+TGG + Chr4:88188733-88188752 MsG0480023659.01.T01:intron 25.0%
!!! AATTTTTTCGGTTTACCTAA+AGG + Chr4:88185452-88185471 MsG0480023659.01.T01:CDS 25.0%
!!! ATTGATGATGACGAAAAATT+CGG + Chr4:88185963-88185982 MsG0480023659.01.T01:CDS 25.0%
!!! ATTTAGGTTATAGTTTTCCA+TGG + Chr4:88188236-88188255 MsG0480023659.01.T01:intron 25.0%
!!! CACATTAATTGGTATTGATT+GGG - Chr4:88186891-88186910 None:intergenic 25.0%
!!! TATGTTACTTTCTAAACTTC+TGG + Chr4:88188035-88188054 MsG0480023659.01.T01:intron 25.0%
AAAAAGATAACTAGCCATTC+AGG - Chr4:88186341-88186360 None:intergenic 30.0%
AAAAGTTTATCTCTCTCTGA+GGG - Chr4:88187878-88187897 None:intergenic 30.0%
AAATCCCCAATGATAAAACA+CGG - Chr4:88189593-88189612 None:intergenic 30.0%
AACATCTATCATGCAGAAAT+TGG - Chr4:88188373-88188392 None:intergenic 30.0%
AAGAGAGGAGTTTGAAAAAT+GGG + Chr4:88185718-88185737 MsG0480023659.01.T01:CDS 30.0%
AATGTGAATCGTGTGATTTA+GGG - Chr4:88187075-88187094 None:intergenic 30.0%
AATTGGTACAATCTTTCCTT+AGG - Chr4:88188356-88188375 None:intergenic 30.0%
ACATAGATAGGCACATTAAT+TGG - Chr4:88186902-88186921 None:intergenic 30.0%
AGAATCAAGTATGTATCACA+AGG + Chr4:88187652-88187671 MsG0480023659.01.T01:intron 30.0%
AGCCAAGAAGAAGAAAAAAA+TGG - Chr4:88187267-88187286 None:intergenic 30.0%
AGTTTGAAAAATGGGAATCA+TGG + Chr4:88185726-88185745 MsG0480023659.01.T01:CDS 30.0%
ATAAATAACCATCACTCTTG+TGG - Chr4:88185884-88185903 None:intergenic 30.0%
ATAATTCTCGCAAACGTAAA+CGG + Chr4:88186042-88186061 MsG0480023659.01.T01:CDS 30.0%
ATCAGATTCAATTCACAATC+TGG + Chr4:88187351-88187370 MsG0480023659.01.T01:intron 30.0%
ATTAATGTGCCTATCTATGT+TGG + Chr4:88186902-88186921 MsG0480023659.01.T01:intron 30.0%
ATTCAATGAAGAACCTATTG+AGG - Chr4:88188841-88188860 None:intergenic 30.0%
ATTGACTACATGGAAAACAA+TGG + Chr4:88188151-88188170 MsG0480023659.01.T01:intron 30.0%
CAAGAGTGATGGTTATTTAT+TGG + Chr4:88185884-88185903 MsG0480023659.01.T01:CDS 30.0%
CAATATGAATCTCGATTCAT+TGG + Chr4:88186935-88186954 MsG0480023659.01.T01:intron 30.0%
CAGAATTAAGTGCATTGTAA+TGG - Chr4:88186380-88186399 None:intergenic 30.0%
CATTGGGGATTTGATAAAAT+GGG + Chr4:88189601-88189620 MsG0480023659.01.T01:CDS 30.0%
CCAAGAAGAAGAAAAAAATG+GGG - Chr4:88187265-88187284 None:intergenic 30.0%
CCTAATGCTTTCATTTCTAA+GGG + Chr4:88188408-88188427 MsG0480023659.01.T01:intron 30.0%
CCTTTAGATTTGAGCATAAA+AGG - Chr4:88185797-88185816 None:intergenic 30.0%
CTATTCAATTACCGTCTATA+TGG + Chr4:88188276-88188295 MsG0480023659.01.T01:intron 30.0%
GCCAAGAAGAAGAAAAAAAT+GGG - Chr4:88187266-88187285 None:intergenic 30.0%
GGATTCTGTGATAATTGAAA+TGG + Chr4:88185608-88185627 MsG0480023659.01.T01:CDS 30.0%
GTTTGAAAAATGGGAATCAT+GGG + Chr4:88185727-88185746 MsG0480023659.01.T01:CDS 30.0%
TAAAAGTTTATCTCTCTCTG+AGG - Chr4:88187879-88187898 None:intergenic 30.0%
TAATGTGAATCGTGTGATTT+AGG - Chr4:88187076-88187095 None:intergenic 30.0%
TACCAAAATAACAAATGGGA+GGG + Chr4:88185915-88185934 MsG0480023659.01.T01:CDS 30.0%
TAGAACTTAACTTAGAGTCA+GGG + Chr4:88187590-88187609 MsG0480023659.01.T01:intron 30.0%
TCAGATTCAATTCACAATCT+GGG + Chr4:88187352-88187371 MsG0480023659.01.T01:intron 30.0%
TCATTGGGGATTTGATAAAA+TGG + Chr4:88189600-88189619 MsG0480023659.01.T01:CDS 30.0%
TGATTCAAACCTGGATTATT+TGG - Chr4:88187203-88187222 None:intergenic 30.0%
TTACCAAAATAACAAATGGG+AGG + Chr4:88185914-88185933 MsG0480023659.01.T01:CDS 30.0%
TTAGAACTTAACTTAGAGTC+AGG + Chr4:88187589-88187608 MsG0480023659.01.T01:intron 30.0%
TTGGAGTAAACTCAATAACA+TGG - Chr4:88187421-88187440 None:intergenic 30.0%
! AAAGCATTAGGGAGAAAATT+GGG - Chr4:88188399-88188418 None:intergenic 30.0%
! CCTTTTATGCTCAAATCTAA+AGG + Chr4:88185794-88185813 MsG0480023659.01.T01:CDS 30.0%
! CTTCTTACTAATGCTTTTAC+TGG + Chr4:88188306-88188325 MsG0480023659.01.T01:intron 30.0%
! GAAGTTGAATTTGGATCTTT+TGG + Chr4:88189850-88189869 MsG0480023659.01.T01:CDS 30.0%
! TGATGTTACTTGATTCTAAC+GGG - Chr4:88185839-88185858 None:intergenic 30.0%
! TTCTCACTTGTTGATAAAGA+TGG - Chr4:88186757-88186776 None:intergenic 30.0%
!! AGATTTTGGAAAGAAACCAA+TGG - Chr4:88186430-88186449 None:intergenic 30.0%
!! ATCAATTTTGCTATGCTTTG+TGG + Chr4:88188442-88188461 MsG0480023659.01.T01:intron 30.0%
!! CAGTAAAAGCATTAGTAAGA+AGG - Chr4:88188308-88188327 None:intergenic 30.0%
!! CCTTAGAAATGAAAGCATTA+GGG - Chr4:88188410-88188429 None:intergenic 30.0%
!! GCACATTAATTGGTATTGAT+TGG - Chr4:88186892-88186911 None:intergenic 30.0%
!! GTTCCAAAAAGACTTGTTTT+GGG - Chr4:88189701-88189720 None:intergenic 30.0%
!! TGAAATCTGTTGTTTCAAAG+TGG + Chr4:88188504-88188523 MsG0480023659.01.T01:intron 30.0%
!! TGTTCCAAAAAGACTTGTTT+TGG - Chr4:88189702-88189721 None:intergenic 30.0%
!!! GGTTTTGAATCATCTTTAAC+AGG - Chr4:88189442-88189461 None:intergenic 30.0%
AAACAAGGCAAGAAAAGACA+TGG + Chr4:88189741-88189760 MsG0480023659.01.T01:CDS 35.0%
AAGCATTAGGGAGAAAATTG+GGG - Chr4:88188398-88188417 None:intergenic 35.0%
AAGTAGCCTTTACACTCATA+AGG + Chr4:88187511-88187530 MsG0480023659.01.T01:intron 35.0%
AAGTATGTATCACAAGGTGT+GGG + Chr4:88187658-88187677 MsG0480023659.01.T01:intron 35.0%
AATATGTACTCACAAGCCAT+TGG + Chr4:88186411-88186430 MsG0480023659.01.T01:intron 35.0%
AATCCCTATCCAACATAGAT+AGG - Chr4:88186914-88186933 None:intergenic 35.0%
AATCTGAATCATGCAACTTC+GGG - Chr4:88186985-88187004 None:intergenic 35.0%
ACAAGTTCAAGTGAAAACGA+GGG + Chr4:88187690-88187709 MsG0480023659.01.T01:intron 35.0%
ACACATGAAAAAACCACCTA+AGG + Chr4:88188337-88188356 MsG0480023659.01.T01:intron 35.0%
AGAACTTAACTTAGAGTCAG+GGG + Chr4:88187591-88187610 MsG0480023659.01.T01:intron 35.0%
AGAAGAAAAAAATGGGGAGA+CGG - Chr4:88187259-88187278 None:intergenic 35.0%
AGACGTTGCATTTACTAGAT+TGG - Chr4:88188608-88188627 None:intergenic 35.0%
AGAGATTTAAGGATGCAATG+AGG + Chr4:88189662-88189681 MsG0480023659.01.T01:CDS 35.0%
AGCTATCAAGCATCCATATA+TGG + Chr4:88189891-88189910 MsG0480023659.01.T01:CDS 35.0%
AGTCAATCATATCATAAGGG+TGG - Chr4:88188138-88188157 None:intergenic 35.0%
ATCCAGATACTTTCGAAACA+AGG + Chr4:88189726-88189745 MsG0480023659.01.T01:CDS 35.0%
ATCTAGTAAATGCAACGTCT+AGG + Chr4:88188608-88188627 MsG0480023659.01.T01:intron 35.0%
ATCTCAATTTCACTGTACCT+TGG - Chr4:88189054-88189073 None:intergenic 35.0%
ATGAAGAACCTATTGAGGAT+AGG - Chr4:88188836-88188855 None:intergenic 35.0%
ATGTGAATCGTGTGATTTAG+GGG - Chr4:88187074-88187093 None:intergenic 35.0%
ATTGAGGATAGGGAATTACA+AGG - Chr4:88188825-88188844 None:intergenic 35.0%
ATTGGTATAGCAGATGACAA+CGG - Chr4:88188590-88188609 None:intergenic 35.0%
CAATTCACAATCTGGGAAAT+AGG + Chr4:88187359-88187378 MsG0480023659.01.T01:intron 35.0%
CATGTATTCTACTGAAAACC+AGG - Chr4:88186834-88186853 None:intergenic 35.0%
CCCTAATGCTTTCATTTCTA+AGG + Chr4:88188407-88188426 MsG0480023659.01.T01:intron 35.0%
CGAAAATCATCATCCATAGA+TGG - Chr4:88189316-88189335 None:intergenic 35.0%
CTAAAGGAGAATTGTAGTAG+AGG + Chr4:88185468-88185487 MsG0480023659.01.T01:CDS 35.0%
CTCTACTACAATTCTCCTTT+AGG - Chr4:88185470-88185489 None:intergenic 35.0%
GAAGAGAGGAGTTTGAAAAA+TGG + Chr4:88185717-88185736 MsG0480023659.01.T01:CDS 35.0%
GAATCTGAATCATGCAACTT+CGG - Chr4:88186986-88187005 None:intergenic 35.0%
GACGGTAATTGAATAGTTAG+AGG - Chr4:88188272-88188291 None:intergenic 35.0%
GATTTCATATTGCTGAGAAC+AGG + Chr4:88189542-88189561 MsG0480023659.01.T01:CDS 35.0%
GCATAGTCAACTTTCAATTC+TGG + Chr4:88188531-88188550 MsG0480023659.01.T01:intron 35.0%
GCTATGCTTTGTGGAAAATA+TGG + Chr4:88188451-88188470 MsG0480023659.01.T01:intron 35.0%
GCTTTACCTTATGAGTGTAA+AGG - Chr4:88187520-88187539 None:intergenic 35.0%
GGTAAGGGAAATAAATTGCA+CGG + Chr4:88189133-88189152 MsG0480023659.01.T01:CDS 35.0%
GTCAACTGCAGTTCAATTTA+GGG - Chr4:88187776-88187795 None:intergenic 35.0%
TAACATAACCAGAGAAGCAA+AGG - Chr4:88188022-88188041 None:intergenic 35.0%
TAATTCTCGCAAACGTAAAC+GGG + Chr4:88186043-88186062 MsG0480023659.01.T01:CDS 35.0%
TACAAAAGTTAGGTAGAACC+TGG - Chr4:88187752-88187771 None:intergenic 35.0%
TACAAGTTCAAGTGAAAACG+AGG + Chr4:88187689-88187708 MsG0480023659.01.T01:intron 35.0%
TAGAGTTGTAACTATGAGAG+CGG - Chr4:88186681-88186700 None:intergenic 35.0%
TCACGTATTCCAAATAATCC+AGG + Chr4:88187191-88187210 MsG0480023659.01.T01:intron 35.0%
TCATATCATAAGGGTGGTAT+TGG - Chr4:88188132-88188151 None:intergenic 35.0%
TCTAGTAAATGCAACGTCTA+GGG + Chr4:88188609-88188628 MsG0480023659.01.T01:intron 35.0%
TCTTCAATGTGATTCAAACC+TGG - Chr4:88187212-88187231 None:intergenic 35.0%
TGAAGAACCTATTGAGGATA+GGG - Chr4:88188835-88188854 None:intergenic 35.0%
TGCAATTCATGTTCTGGTAA+GGG + Chr4:88189118-88189137 MsG0480023659.01.T01:CDS 35.0%
TGTAATTCCCTATCCTCAAT+AGG + Chr4:88188825-88188844 MsG0480023659.01.T01:intron 35.0%
TTCTTATATATGAGACCGGA+GGG + Chr4:88186614-88186633 MsG0480023659.01.T01:intron 35.0%
TTCTTATATATGAGACCGGA+TGG - Chr4:88186633-88186614 None:intergenic 35.0%
TTCTTCCTTGTGAAGGAAAA+AGG + Chr4:88185552-88185571 MsG0480023659.01.T01:CDS 35.0%
TTTCTTATATATGAGACCGG+AGG + Chr4:88186613-88186632 MsG0480023659.01.T01:intron 35.0%
TTTGTTAACCACAAGAGTGA+TGG + Chr4:88185873-88185892 MsG0480023659.01.T01:CDS 35.0%
! ACGTATCTGGTTTATAATGC+AGG - Chr4:88186562-88186581 None:intergenic 35.0%
! CATTCCGTGTTTTATCATTG+GGG + Chr4:88189586-88189605 MsG0480023659.01.T01:CDS 35.0%
! CTTTTCAGTAATATCTGGGT+TGG - Chr4:88189281-88189300 None:intergenic 35.0%
! GAATTTGGATCTTTTGGTGA+TGG + Chr4:88189856-88189875 MsG0480023659.01.T01:CDS 35.0%
! GATGATGACGAAGTTGAATT+TGG + Chr4:88189841-88189860 MsG0480023659.01.T01:CDS 35.0%
! GCATTCCGTGTTTTATCATT+GGG + Chr4:88189585-88189604 MsG0480023659.01.T01:CDS 35.0%
! GTTTTCACTTGAACTTGTAC+AGG - Chr4:88187688-88187707 None:intergenic 35.0%
! TATCATCACCGTCAACATTT+TGG - Chr4:88185944-88185963 None:intergenic 35.0%
! TGCATTCCGTGTTTTATCAT+TGG + Chr4:88189584-88189603 MsG0480023659.01.T01:CDS 35.0%
! TTTCTGAGAGTGACTCTAAA+TGG + Chr4:88189398-88189417 MsG0480023659.01.T01:CDS 35.0%
!! ATCTGAGTGATTTTGAAGGT+TGG + Chr4:88185679-88185698 MsG0480023659.01.T01:CDS 35.0%
!! CCCTTAGAAATGAAAGCATT+AGG - Chr4:88188411-88188430 None:intergenic 35.0%
!! GAAAGCATTAGGGAGAAAAT+TGG - Chr4:88188400-88188419 None:intergenic 35.0%
!! GGGTTTTAACCTTCATGTTT+TGG + Chr4:88185629-88185648 MsG0480023659.01.T01:CDS 35.0%
!! TTGTTTCGAAAGTATCTGGA+TGG - Chr4:88189727-88189746 None:intergenic 35.0%
!! TTTCTTTTGTTGAAGTGCCT+AGG - Chr4:88186705-88186724 None:intergenic 35.0%
!!! AAAAAGACTTGTTTTGGGAG+GGG - Chr4:88189696-88189715 None:intergenic 35.0%
!!! ACTTTTTTGTTCAGTTGCTG+AGG + Chr4:88186180-88186199 MsG0480023659.01.T01:CDS 35.0%
!!! CAAAAAGACTTGTTTTGGGA+GGG - Chr4:88189697-88189716 None:intergenic 35.0%
!!! CCCCATTTTTTTCTTCTTCT+TGG + Chr4:88187262-88187281 MsG0480023659.01.T01:intron 35.0%
!!! CTTTTTTGTTCAGTTGCTGA+GGG + Chr4:88186181-88186200 MsG0480023659.01.T01:CDS 35.0%
!!! GATCTTTTGGTGATGGTTTT+GGG + Chr4:88189863-88189882 MsG0480023659.01.T01:CDS 35.0%
AATGGTTAGGCACACAAGTA+TGG + Chr4:88189416-88189435 MsG0480023659.01.T01:CDS 40.0%
ACAAGATCTGTTTCGGTAGT+AGG - Chr4:88189463-88189482 None:intergenic 40.0%
ACTACCGAAACAGATCTTGT+TGG + Chr4:88189463-88189482 MsG0480023659.01.T01:CDS 40.0%
AGCAACATGATCCTCATACA+TGG - Chr4:88189023-88189042 None:intergenic 40.0%
ATACTCAACAATACAACCGC+CGG - Chr4:88185388-88185407 None:intergenic 40.0%
ATCCTATCCTAATCCTGCAA+TGG + Chr4:88187551-88187570 MsG0480023659.01.T01:intron 40.0%
ATCTGAATCATGCAACTTCG+GGG - Chr4:88186984-88187003 None:intergenic 40.0%
ATTGCACGGTTCAGTCAATA+TGG + Chr4:88189147-88189166 MsG0480023659.01.T01:CDS 40.0%
CAAGTATGTATCACAAGGTG+TGG + Chr4:88187657-88187676 MsG0480023659.01.T01:intron 40.0%
CACTCCAAGCAATCCATATA+TGG - Chr4:88189907-88189926 None:intergenic 40.0%
CATAGTTACAACTCTAGCCT+AGG + Chr4:88186685-88186704 MsG0480023659.01.T01:intron 40.0%
CGGTTGTATTGTTGAGTATC+GGG + Chr4:88185389-88185408 MsG0480023659.01.T01:CDS 40.0%
CTACCGAAACAGATCTTGTT+GGG + Chr4:88189464-88189483 MsG0480023659.01.T01:CDS 40.0%
CTAGTAAATGCAACGTCTAG+GGG + Chr4:88188610-88188629 MsG0480023659.01.T01:intron 40.0%
CTGCAATTCATGTTCTGGTA+AGG + Chr4:88189117-88189136 MsG0480023659.01.T01:CDS 40.0%
CTTTGCTGCAATTCATGTTC+TGG + Chr4:88189112-88189131 MsG0480023659.01.T01:CDS 40.0%
GAAGGTTAGACCCATATAGA+CGG - Chr4:88188290-88188309 None:intergenic 40.0%
GAGAAAATCTGAGCCATCTA+TGG + Chr4:88189300-88189319 MsG0480023659.01.T01:CDS 40.0%
GAGAGTGACTCTAAATGGTT+AGG + Chr4:88189403-88189422 MsG0480023659.01.T01:CDS 40.0%
GATGACGAAAAATTCGGCAA+TGG + Chr4:88185969-88185988 MsG0480023659.01.T01:CDS 40.0%
GCAAACTCGCCATTATGTAA+AGG - Chr4:88187454-88187473 None:intergenic 40.0%
GCAACTGAACAAAAAAGTCC+TGG - Chr4:88186178-88186197 None:intergenic 40.0%
GCATATGTATGCTTTGCAGA+AGG + Chr4:88188982-88189001 MsG0480023659.01.T01:intron 40.0%
GCGGTTGTATTGTTGAGTAT+CGG + Chr4:88185388-88185407 MsG0480023659.01.T01:CDS 40.0%
GGGATTTGATAAAATGGGTG+AGG + Chr4:88189606-88189625 MsG0480023659.01.T01:CDS 40.0%
GGTCAACTGCAGTTCAATTT+AGG - Chr4:88187777-88187796 None:intergenic 40.0%
GTGCCTATCTATGTTGGATA+GGG + Chr4:88186908-88186927 MsG0480023659.01.T01:intron 40.0%
TCAACTGTTCTTCCTTGTGA+AGG + Chr4:88185545-88185564 MsG0480023659.01.T01:CDS 40.0%
TCAGCAAAACATTCGAAGAG+AGG + Chr4:88185703-88185722 MsG0480023659.01.T01:CDS 40.0%
TCCTTGTGAAGGAAAAAGGT+GGG + Chr4:88185556-88185575 MsG0480023659.01.T01:CDS 40.0%
TCTCCCAACAAGATCTGTTT+CGG - Chr4:88189470-88189489 None:intergenic 40.0%
TGACCATTCTGATATGCACT+GGG + Chr4:88188783-88188802 MsG0480023659.01.T01:intron 40.0%
TGGTACAATCTTTCCTTAGG+TGG - Chr4:88188353-88188372 None:intergenic 40.0%
TGTGAATCGTGTGATTTAGG+GGG - Chr4:88187073-88187092 None:intergenic 40.0%
TGTGCCTATCTATGTTGGAT+AGG + Chr4:88186907-88186926 MsG0480023659.01.T01:intron 40.0%
TTAACTTAGAGTCAGGGGAA+TGG + Chr4:88187596-88187615 MsG0480023659.01.T01:intron 40.0%
TTACAAACCAGTTTGCATGC+TGG - Chr4:88187103-88187122 None:intergenic 40.0%
TTATACTCCTTCCACCTTGA+TGG - Chr4:88186149-88186168 None:intergenic 40.0%
TTCCATATCCTGAACCTGAA+TGG + Chr4:88186324-88186343 MsG0480023659.01.T01:intron 40.0%
TTCCTTGTGAAGGAAAAAGG+TGG + Chr4:88185555-88185574 MsG0480023659.01.T01:CDS 40.0%
TTTCTCTTCTCAGTTGCATC+TGG - Chr4:88189250-88189269 None:intergenic 40.0%
! AAAATTCGGCAATGGTGTTG+AGG + Chr4:88185977-88185996 MsG0480023659.01.T01:CDS 40.0%
! ATAACTAGCCATTCAGGTTC+AGG - Chr4:88186335-88186354 None:intergenic 40.0%
! ATGATGCGGTATCGAGAAAA+GGG + Chr4:88185580-88185599 MsG0480023659.01.T01:CDS 40.0%
! ATGTAAAGGCACACTCTCTT+TGG - Chr4:88187440-88187459 None:intergenic 40.0%
! CAGTTAGCAAGCTGAGATTT+TGG - Chr4:88186444-88186463 None:intergenic 40.0%
! CCTCCCAAAACAAGTCTTTT+TGG + Chr4:88189695-88189714 MsG0480023659.01.T01:CDS 40.0%
! GAGAGTGTGCCTTTACATAA+TGG + Chr4:88187442-88187461 MsG0480023659.01.T01:intron 40.0%
! GCATCCATATATGGATTGCT+TGG + Chr4:88189900-88189919 MsG0480023659.01.T01:CDS 40.0%
! GTTTTATGCCTTTGCTTCTC+TGG + Chr4:88188011-88188030 MsG0480023659.01.T01:intron 40.0%
! TATCATAAGGGTGGTATTGG+TGG - Chr4:88188129-88188148 None:intergenic 40.0%
! TATGATGCGGTATCGAGAAA+AGG + Chr4:88185579-88185598 MsG0480023659.01.T01:CDS 40.0%
! TCAAGGTGGAAGGAGTATAA+AGG + Chr4:88186149-88186168 MsG0480023659.01.T01:CDS 40.0%
! TTGTGTGGAAATCTCTGAGA+AGG + Chr4:88186016-88186035 MsG0480023659.01.T01:CDS 40.0%
!! AGTGCAGTTACAGTTCTGAA+TGG - Chr4:88186805-88186824 None:intergenic 40.0%
!! ATCATAAGGGTGGTATTGGT+GGG - Chr4:88188128-88188147 None:intergenic 40.0%
!! ATTGTAGTAGAGGCATTGTG+AGG + Chr4:88185478-88185497 MsG0480023659.01.T01:CDS 40.0%
!! TGCCTTGTTTCGAAAGTATC+TGG - Chr4:88189731-88189750 None:intergenic 40.0%
!!! CACCCTCCCATTTGTTATTT+TGG - Chr4:88185920-88185939 None:intergenic 40.0%
!!! CCAAAAAGACTTGTTTTGGG+AGG - Chr4:88189698-88189717 None:intergenic 40.0%
!!! GGATCTTTTGGTGATGGTTT+TGG + Chr4:88189862-88189881 MsG0480023659.01.T01:CDS 40.0%
!!! TTTTGGTGATGGTTTTGGGA+GGG + Chr4:88189867-88189886 MsG0480023659.01.T01:CDS 40.0%
AAGTGTAGCTGCAACGTTCA+AGG + Chr4:88189502-88189521 MsG0480023659.01.T01:CDS 45.0%
ACATGATCCTCATACATGGC+AGG - Chr4:88189019-88189038 None:intergenic 45.0%
ACGGGAATCGATATCAGGAA+TGG + Chr4:88186061-88186080 MsG0480023659.01.T01:CDS 45.0%
AGAAAGCAGGCTGAACCAAA+TGG + Chr4:88186224-88186243 MsG0480023659.01.T01:CDS 45.0%
AGTGAAAACGAGGGCTGATT+TGG + Chr4:88187699-88187718 MsG0480023659.01.T01:intron 45.0%
ATTCAGCGTCTAGACGATCA+AGG - Chr4:88185356-88185375 None:intergenic 45.0%
CAAAAGGTTCACACCATTGC+AGG - Chr4:88187567-88187586 None:intergenic 45.0%
CACCATTACCAGAACCATCA+AGG + Chr4:88186132-88186151 MsG0480023659.01.T01:CDS 45.0%
CACCATTGCAGGATTAGGAT+AGG - Chr4:88187556-88187575 None:intergenic 45.0%
CAGCGAGATTTAACAGAGAC+AGG - Chr4:88189091-88189110 None:intergenic 45.0%
CATGATTCAGATTCTGCTGC+GGG + Chr4:88186992-88187011 MsG0480023659.01.T01:intron 45.0%
CATGTTGCTCTTAGTCACCA+AGG + Chr4:88189034-88189053 MsG0480023659.01.T01:CDS 45.0%
CATTACCAGAACCATCAAGG+TGG + Chr4:88186135-88186154 MsG0480023659.01.T01:CDS 45.0%
CGATATCAGGAATGGTGAAC+TGG + Chr4:88186069-88186088 MsG0480023659.01.T01:CDS 45.0%
CGTAAACGGGAATCGATATC+AGG + Chr4:88186056-88186075 MsG0480023659.01.T01:CDS 45.0%
CGTCTAGACGCTGAATTTCA+TGG + Chr4:88185360-88185379 MsG0480023659.01.T01:CDS 45.0%
CTACAGGAATGGGATAGCTT+TGG + Chr4:88186638-88186657 MsG0480023659.01.T01:intron 45.0%
CTCAGAGATTTCCACACAAG+AGG - Chr4:88186015-88186034 None:intergenic 45.0%
CTTCTCAGTTGCATCTGGTT+TGG - Chr4:88189245-88189264 None:intergenic 45.0%
GAAACAGATCTTGTTGGGAG+AGG + Chr4:88189469-88189488 MsG0480023659.01.T01:CDS 45.0%
GAAACTACACCAGTCCATTC+CGG - Chr4:88189382-88189401 None:intergenic 45.0%
GACAACGGCATTATCATCAC+AGG - Chr4:88188575-88188594 None:intergenic 45.0%
GACGCTGAATTTCATGGAAC+CGG + Chr4:88185366-88185385 MsG0480023659.01.T01:CDS 45.0%
GCATGATTCAGATTCTGCTG+CGG + Chr4:88186991-88187010 MsG0480023659.01.T01:intron 45.0%
GGAAAAAGGTGGGTATGATG+CGG + Chr4:88185566-88185585 MsG0480023659.01.T01:CDS 45.0%
GGAGTCAGAAATATGTCCTC+TGG + Chr4:88189168-88189187 MsG0480023659.01.T01:CDS 45.0%
GTGAATCGTGTGATTTAGGG+GGG - Chr4:88187072-88187091 None:intergenic 45.0%
GTGACCATTCTGATATGCAC+TGG + Chr4:88188782-88188801 MsG0480023659.01.T01:intron 45.0%
GTGAGGAAGTTTCACTTCGA+TGG + Chr4:88189623-88189642 MsG0480023659.01.T01:CDS 45.0%
GTTCACACCATTGCAGGATT+AGG - Chr4:88187561-88187580 None:intergenic 45.0%
TCAAGCAACTTGACTCTGTG+AGG - Chr4:88188666-88188685 None:intergenic 45.0%
TCACGGATGCCAAAACATGA+AGG - Chr4:88185641-88185660 None:intergenic 45.0%
TCATCGCTGTCAACAGTCTT+CGG - Chr4:88189826-88189845 None:intergenic 45.0%
TGACCCAGTGCATATCAGAA+TGG - Chr4:88188789-88188808 None:intergenic 45.0%
TGGGAAGATGATCCACCATT+TGG - Chr4:88186242-88186261 None:intergenic 45.0%
TGTAACTGCACTATTGAGCC+TGG + Chr4:88186813-88186832 MsG0480023659.01.T01:intron 45.0%
TGTTCTGTCTGTGAGAAAGC+AGG + Chr4:88186211-88186230 MsG0480023659.01.T01:CDS 45.0%
TTAGAGGTAAAGGGAGACCA+TGG - Chr4:88188256-88188275 None:intergenic 45.0%
TTAGAGTCAGGGGAATGGAA+GGG + Chr4:88187601-88187620 MsG0480023659.01.T01:intron 45.0%
TTATCTAGCTGCCTCTTGTG+TGG + Chr4:88186001-88186020 MsG0480023659.01.T01:CDS 45.0%
TTATGCTCCAGCATGCAAAC+TGG + Chr4:88187093-88187112 MsG0480023659.01.T01:intron 45.0%
TTTGCTCCCTTGTTAACTCG+TGG + Chr4:88187469-88187488 MsG0480023659.01.T01:intron 45.0%
! ACCCACCTTTTTCCTTCACA+AGG - Chr4:88185560-88185579 None:intergenic 45.0%
! AGCCATTCAGGTTCAGGATA+TGG - Chr4:88186329-88186348 None:intergenic 45.0%
! AGGTGGAAGGAGTATAAAGG+AGG + Chr4:88186152-88186171 MsG0480023659.01.T01:CDS 45.0%
! ATGGCATCGAGAGTATACCT+GGG - Chr4:88186261-88186280 None:intergenic 45.0%
! GGTATCGAGAAAAGGGTTGT+GGG + Chr4:88185587-88185606 MsG0480023659.01.T01:CDS 45.0%
! TATGGCATCGAGAGTATACC+TGG - Chr4:88186262-88186281 None:intergenic 45.0%
! TGTAGGTCACCTTTTCCAAG+CGG + Chr4:88189351-88189370 MsG0480023659.01.T01:CDS 45.0%
! TTCTTTTCAGTGACGACGTC+TGG - Chr4:88189211-88189230 None:intergenic 45.0%
!! AAATGGTGGATCATCTTCCC+AGG + Chr4:88186241-88186260 MsG0480023659.01.T01:CDS 45.0%
!! AGAGCGGTCATTTTGTAGAC+TGG - Chr4:88186665-88186684 None:intergenic 45.0%
!! CACCTTGATGGTTCTGGTAA+TGG - Chr4:88186137-88186156 None:intergenic 45.0%
!! CTCAGCTTGCTAACTGCTAA+AGG + Chr4:88186448-88186467 MsG0480023659.01.T01:intron 45.0%
!! CTTGATGGTTCTGGTAATGG+TGG - Chr4:88186134-88186153 None:intergenic 45.0%
!! GAGCGGTCATTTTGTAGACT+GGG - Chr4:88186664-88186683 None:intergenic 45.0%
!! GAGGGTGTCCAAAATGTTGA+CGG + Chr4:88185933-88185952 MsG0480023659.01.T01:CDS 45.0%
!!! CTTTTGGTGATGGTTTTGGG+AGG + Chr4:88189866-88189885 MsG0480023659.01.T01:CDS 45.0%
!!! TTGGCTGTTGTTTTCTCCAG+AGG - Chr4:88189187-88189206 None:intergenic 45.0%
AAGCAGGCTGAACCAAATGG+TGG + Chr4:88186227-88186246 MsG0480023659.01.T01:CDS 50.0%
ACAGGGTCGCCCAACTAAAA+CGG + Chr4:88187031-88187050 MsG0480023659.01.T01:intron 50.0%
ACCAGAACCATCAAGGTGGA+AGG + Chr4:88186139-88186158 MsG0480023659.01.T01:CDS 50.0%
CAGGAATGGTGAACTGGACA+CGG + Chr4:88186075-88186094 MsG0480023659.01.T01:CDS 50.0%
CCCAACTAAAACGGCTGTCA+GGG + Chr4:88187040-88187059 MsG0480023659.01.T01:intron 50.0%
CCCTTGTTAACTCGTGGTCA+CGG + Chr4:88187475-88187494 MsG0480023659.01.T01:intron 50.0%
CCGTGACCACGAGTTAACAA+GGG - Chr4:88187478-88187497 None:intergenic 50.0%
CCTTGTTAACTCGTGGTCAC+GGG + Chr4:88187476-88187495 MsG0480023659.01.T01:intron 50.0%
CTTAGAGTCAGGGGAATGGA+AGG + Chr4:88187600-88187619 MsG0480023659.01.T01:intron 50.0%
GATGCATCCTGCCATGTATG+AGG + Chr4:88189009-88189028 MsG0480023659.01.T01:CDS 50.0%
GCGCAACCTTGAAATGGACA+GGG + Chr4:88187014-88187033 MsG0480023659.01.T01:intron 50.0%
GCTGAATTTCATGGAACCGG+CGG + Chr4:88185369-88185388 MsG0480023659.01.T01:CDS 50.0%
GGTGGAGCTACAGGATCAAA+CGG - Chr4:88186116-88186135 None:intergenic 50.0%
TGTTCAGTTGCTGAGGGCAA+GGG + Chr4:88186187-88186206 MsG0480023659.01.T01:CDS 50.0%
TTCAGTGACGACGTCTGGTT+TGG - Chr4:88189206-88189225 None:intergenic 50.0%
TTGTTCAGTTGCTGAGGGCA+AGG + Chr4:88186186-88186205 MsG0480023659.01.T01:CDS 50.0%
! CCTTTTCCAAGCGGAAGTTC+CGG + Chr4:88189360-88189379 MsG0480023659.01.T01:CDS 50.0%
! CGGTATCGAGAAAAGGGTTG+TGG + Chr4:88185586-88185605 MsG0480023659.01.T01:CDS 50.0%
! GAAGGAGTATAAAGGAGGCC+AGG + Chr4:88186157-88186176 MsG0480023659.01.T01:CDS 50.0%
! TCCTTCCACCTTGATGGTTC+TGG - Chr4:88186143-88186162 None:intergenic 50.0%
!! ACCCTGACAGCCGTTTTAGT+TGG - Chr4:88187044-88187063 None:intergenic 50.0%
!! GTGGTATTGGTGGGTACACA+TGG - Chr4:88188119-88188138 None:intergenic 50.0%
!! TCTGGTAATGGTGGAGCTAC+AGG - Chr4:88186125-88186144 None:intergenic 50.0%
!!! CCCTGACAGCCGTTTTAGTT+GGG - Chr4:88187043-88187062 None:intergenic 50.0%
ACCGGAGGGACTACAGGAAT+GGG + Chr4:88186628-88186647 MsG0480023659.01.T01:intron 55.0%
CCCGTGACCACGAGTTAACA+AGG - Chr4:88187479-88187498 None:intergenic 55.0%
CCGGAACTTCCGCTTGGAAA+AGG - Chr4:88189363-88189382 None:intergenic 55.0%
CTTGTTGGGAGAGGAAGACG+AGG + Chr4:88189478-88189497 MsG0480023659.01.T01:CDS 55.0%
GCCCAACTAAAACGGCTGTC+AGG + Chr4:88187039-88187058 MsG0480023659.01.T01:intron 55.0%
GGCGCAACCTTGAAATGGAC+AGG + Chr4:88187013-88187032 MsG0480023659.01.T01:intron 55.0%
TATGAGACCGGAGGGACTAC+AGG + Chr4:88186622-88186641 MsG0480023659.01.T01:intron 55.0%
TCCAAGCGGAAGTTCCGGAA+TGG + Chr4:88189365-88189384 MsG0480023659.01.T01:CDS 55.0%
TCCATTCCGGAACTTCCGCT+TGG - Chr4:88189369-88189388 None:intergenic 55.0%
TCCCATTCCTGTAGTCCCTC+CGG - Chr4:88186632-88186651 None:intergenic 55.0%
TGCAACGTCTAGGGGAAGAG+TGG + Chr4:88188618-88188637 MsG0480023659.01.T01:intron 55.0%
! AGGCATTGTGAGGCCAATGC+CGG + Chr4:88185488-88185507 MsG0480023659.01.T01:CDS 55.0%
AGGCCAATGCCGGTGATGCT+CGG + Chr4:88185498-88185517 MsG0480023659.01.T01:CDS 60.0%
ATGCCGGTGATGCTCGGAGA+TGG + Chr4:88185504-88185523 MsG0480023659.01.T01:CDS 60.0%
CTGCGGGCGCAACCTTGAAA+TGG + Chr4:88187008-88187027 MsG0480023659.01.T01:intron 60.0%
GACCGGAGGGACTACAGGAA+TGG + Chr4:88186627-88186646 MsG0480023659.01.T01:intron 60.0%
GCGGAAGTTCCGGAATGGAC+TGG + Chr4:88189370-88189389 MsG0480023659.01.T01:CDS 60.0%
GGACCATCTCCGAGCATCAC+CGG - Chr4:88185510-88185529 None:intergenic 60.0%
GGGCGACCCTGTCCATTTCA+AGG - Chr4:88187023-88187042 None:intergenic 60.0%
TCTCCGAGCATCACCGGCAT+TGG - Chr4:88185504-88185523 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 88185336 88189960 88185336 ID=MsG0480023659.01;Name=MsG0480023659.01
Chr4 mRNA 88185336 88189960 88185336 ID=MsG0480023659.01.T01;Parent=MsG0480023659.01;Name=MsG0480023659.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|628
Chr4 exon 88185336 88186262 88185336 ID=MsG0480023659.01.T01:exon:6238;Parent=MsG0480023659.01.T01
Chr4 exon 88189001 88189960 88189001 ID=MsG0480023659.01.T01:exon:6239;Parent=MsG0480023659.01.T01
Chr4 CDS 88185336 88186262 88185336 ID=MsG0480023659.01.T01:cds;Parent=MsG0480023659.01.T01
Chr4 CDS 88189001 88189960 88189001 ID=MsG0480023659.01.T01:cds;Parent=MsG0480023659.01.T01
Gene Sequence

>MsG0480023659.01.T01

ATGGCAAACGGGTCTTTCCTTGATCGTCTAGACGCTGAATTTCATGGAACCGGCGGTTGTATTGTTGAGTATCGGGCTGATCGTGACAAAGCTAAACAGAAATCTTTGTTTTGTCAAATTTTTTCGGTTTACCTAAAGGAGAATTGTAGTAGAGGCATTGTGAGGCCAATGCCGGTGATGCTCGGAGATGGTCCGTTGCTTGATTTATATCAACTGTTCTTCCTTGTGAAGGAAAAAGGTGGGTATGATGCGGTATCGAGAAAAGGGTTGTGGGATTCTGTGATAATTGAAATGGGTTTTAACCTTCATGTTTTGGCATCCGTGAAATTAGTTTATGAAAAATATCTGAGTGATTTTGAAGGTTGGCTCAGCAAAACATTCGAAGAGAGGAGTTTGAAAAATGGGAATCATGGGTATTTGAATTCATTGCCGATAGATCTAGAAAAAGAATTTCGAAGCCTTTTATGCTCAAATCTAAAGGACAACGATGATGATTTTGTCCCGTTAGAATCAAGTAACATCATAAAGCGCATTGAATTTGTTAACCACAAGAGTGATGGTTATTTATTGGACACTAATTACCAAAATAACAAATGGGAGGGTGTCCAAAATGTTGACGGTGATGATATTGATGATGACGAAAAATTCGGCAATGGTGTTGAGGATTATCTAGCTGCCTCTTGTGTGGAAATCTCTGAGAAGGAATATAATTCTCGCAAACGTAAACGGGAATCGATATCAGGAATGGTGAACTGGACACGGCATATTGCAAAACATCCGTTTGATCCTGTAGCTCCACCATTACCAGAACCATCAAGGTGGAAGGAGTATAAAGGAGGCCAGGACTTTTTTGTTCAGTTGCTGAGGGCAAGGGATGTTCTGTCTGTGAGAAAGCAGGCTGAACCAAATGGTGGATCATCTTCCCAGAAGGTGAAGATGCATCCTGCCATGTATGAGGATCATGTTGCTCTTAGTCACCAAGGTACAGTGAAATTGAGATATAGTGAAAGGCTTCCTGTCTCTGTTAAATCTCGCTGTCTTTGCTGCAATTCATGTTCTGGTAAGGGAAATAAATTGCACGGTTCAGTCAATATGGAGTCAGAAATATGTCCTCTGGAGAAAACAACAGCCAAACCAGACGTCGTCACTGAAAAGAAAAAATCAACTGCCAAACCAGATGCAACTGAGAAGAGAAAATCAACTGCCAACCCAGATATTACTGAAAAGAGAAAATCTGAGCCATCTATGGATGATGATTTTCGTGAAAAGCTTGTTTCTGTAGGTCACCTTTTCCAAGCGGAAGTTCCGGAATGGACTGGTGTAGTTTCTGAGAGTGACTCTAAATGGTTAGGCACACAAGTATGGCCTGTTAAAGATGATTCAAAACCTACTACCGAAACAGATCTTGTTGGGAGAGGAAGACGAGGAAAGTGTAGCTGCAACGTTCAAGGTTCTGTTGACTGTGTCAGATTTCATATTGCTGAGAACAGGATGAAGCTGAAGCTTGAATTGCATTCCGTGTTTTATCATTGGGGATTTGATAAAATGGGTGAGGAAGTTTCACTTCGATGGACAGCTGATGAAGAAAAGAGATTTAAGGATGCAATGAGGTTAAAATTCCCCTCCCAAAACAAGTCTTTTTGGAACAATCCATCCAGATACTTTCGAAACAAGGCAAGAAAAGACATGGTGAGCTATTACTTCAATGTATATCTTATTCAACTAAGAAGCTATCAGAATCGAGTGACTCCGAAGACTGTTGACAGCGATGATGACGAAGTTGAATTTGGATCTTTTGGTGATGGTTTTGGGAGGGAAGCTATCAAGCATCCATATATGGATTGCTTGGAGTGTTCAGAGAACAAGCAATGCTTTGACTTTGAGTAG

Protein sequence

>MsG0480023659.01.T01

MANGSFLDRLDAEFHGTGGCIVEYRADRDKAKQKSLFCQIFSVYLKENCSRGIVRPMPVMLGDGPLLDLYQLFFLVKEKGGYDAVSRKGLWDSVIIEMGFNLHVLASVKLVYEKYLSDFEGWLSKTFEERSLKNGNHGYLNSLPIDLEKEFRSLLCSNLKDNDDDFVPLESSNIIKRIEFVNHKSDGYLLDTNYQNNKWEGVQNVDGDDIDDDEKFGNGVEDYLAASCVEISEKEYNSRKRKRESISGMVNWTRHIAKHPFDPVAPPLPEPSRWKEYKGGQDFFVQLLRARDVLSVRKQAEPNGGSSSQKVKMHPAMYEDHVALSHQGTVKLRYSERLPVSVKSRCLCCNSCSGKGNKLHGSVNMESEICPLEKTTAKPDVVTEKKKSTAKPDATEKRKSTANPDITEKRKSEPSMDDDFREKLVSVGHLFQAEVPEWTGVVSESDSKWLGTQVWPVKDDSKPTTETDLVGRGRRGKCSCNVQGSVDCVRFHIAENRMKLKLELHSVFYHWGFDKMGEEVSLRWTADEEKRFKDAMRLKFPSQNKSFWNNPSRYFRNKARKDMVSYYFNVYLIQLRSYQNRVTPKTVDSDDDEVEFGSFGDGFGREAIKHPYMDCLECSENKQCFDFE*