AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006892.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006892.01.T01 MTR_2g016140 97.143 315 9 0 1 315 1 315 0.0 636
MsG0280006892.01.T01 MTR_2g016140 97.115 312 9 0 1 312 1 312 0.0 629
MsG0280006892.01.T01 MTR_4g079960 49.533 321 110 6 11 315 19 303 1.70e-81 249
MsG0280006892.01.T01 MTR_4g079960 50.000 312 104 6 19 314 27 302 1.74e-80 247
MsG0280006892.01.T01 MTR_4g079960 49.843 319 107 7 11 312 19 301 2.13e-80 246
MsG0280006892.01.T01 MTR_8g022290 40.728 302 142 10 19 309 64 339 7.45e-53 177
MsG0280006892.01.T01 MTR_2g092960 32.075 371 162 9 11 299 34 396 1.52e-31 125
MsG0280006892.01.T01 MTR_1g061600 37.624 101 57 3 23 122 133 228 1.09e-16 80.9
MsG0280006892.01.T01 MTR_6g486270 36.170 94 55 2 23 115 130 219 3.27e-16 79.0
MsG0280006892.01.T01 MTR_1g037650 36.735 98 55 2 18 115 33 123 4.28e-14 70.1
MsG0280006892.01.T01 MTR_3g014280 37.755 98 54 2 18 115 33 123 9.59e-14 71.2
MsG0280006892.01.T01 MTR_2g102227 36.752 117 67 3 14 128 263 374 2.24e-12 67.8
MsG0280006892.01.T01 MTR_4g117990 31.915 94 62 2 22 114 43 135 5.84e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006892.01.T01 AT3G58630 42.857 336 131 9 3 313 2 301 5.25e-67 212
MsG0280006892.01.T01 AT3G58630 42.857 336 131 9 3 313 2 301 9.61e-67 212
MsG0280006892.01.T01 AT3G14180 33.333 345 157 10 19 305 80 409 3.31e-48 167
MsG0280006892.01.T01 AT3G11100 37.500 296 119 7 19 314 18 247 2.56e-46 157
MsG0280006892.01.T01 AT5G05550 38.176 296 112 8 19 314 20 244 1.03e-45 155
MsG0280006892.01.T01 AT5G05550 38.176 296 112 8 19 314 20 244 1.44e-45 155
MsG0280006892.01.T01 AT5G05550 39.446 289 104 9 19 307 20 237 1.44e-44 152
MsG0280006892.01.T01 AT1G54060 51.020 98 44 2 19 116 90 183 1.99e-21 94.0
MsG0280006892.01.T01 AT3G54390 27.451 306 168 12 5 303 16 274 2.59e-20 89.7
MsG0280006892.01.T01 AT3G54390 27.451 306 168 12 5 303 32 290 3.94e-20 89.4
MsG0280006892.01.T01 AT3G10030 35.433 127 74 3 23 145 161 283 9.24e-20 90.1
MsG0280006892.01.T01 AT3G10030 35.433 127 74 3 23 145 161 283 9.58e-20 90.1
MsG0280006892.01.T01 AT3G24490 37.634 93 53 2 23 115 90 177 4.15e-16 78.2
MsG0280006892.01.T01 AT2G44730 22.684 313 197 10 13 300 56 348 4.90e-13 69.3

Find 93 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGAGGATGCAGATGTTTA+TGG 0.218617 2:-7679984 MsG0280006892.01.T01:CDS
CATCGGAAATTTGCTAATTC+TGG 0.236718 2:-7680412 MsG0280006892.01.T01:CDS
ACTGAGGCAGATGGTGGATT+TGG 0.320650 2:-7680044 MsG0280006892.01.T01:CDS
AACTTCTTAGCACTGAAATT+AGG 0.324747 2:+7680496 None:intergenic
GAAGTGGATGAAGGGGATAA+AGG 0.329017 2:-7680142 MsG0280006892.01.T01:CDS
GTAGAGGAAGAGGAAGGGAG+GGG 0.346774 2:-7680169 MsG0280006892.01.T01:CDS
AAGTAGAGGAAGAGGAAGGG+AGG 0.369131 2:-7680171 MsG0280006892.01.T01:CDS
TTCCACTCTCGTCGATGCAT+GGG 0.378747 2:-7680761 MsG0280006892.01.T01:CDS
AAGTGGATGAAGGGGATAAA+GGG 0.379670 2:-7680141 MsG0280006892.01.T01:CDS
GACCAACAATCCTCGCGAAC+GGG 0.390355 2:+7680796 None:intergenic
CTTCCACTCTCGTCGATGCA+TGG 0.395037 2:-7680762 MsG0280006892.01.T01:CDS
AGAGGTGGAAGTAGAGGAAG+AGG 0.405371 2:-7680179 MsG0280006892.01.T01:CDS
GGAGGAAGTTGAGGAGGAAG+AGG 0.407734 2:-7680197 MsG0280006892.01.T01:CDS
GTGGAATGTACCGCAATTGC+AGG 0.408758 2:+7680376 None:intergenic
GCGAAGGCGATAGAGAGTTT+TGG 0.411580 2:-7680097 MsG0280006892.01.T01:CDS
ATTAAGCGTGGAAAACCATC+TGG 0.413416 2:-7679938 MsG0280006892.01.T01:CDS
ATCAATTTCTTCACCGGTGG+CGG 0.426236 2:-7680473 MsG0280006892.01.T01:CDS
TAGAGGAAGAGGAAGGGAGG+GGG 0.434612 2:-7680168 MsG0280006892.01.T01:CDS
AGCTGCAGCCGCTGCTGCTG+CGG 0.440024 2:-7680254 MsG0280006892.01.T01:CDS
AAAGAATCGTGGTGAAAATC+CGG 0.442007 2:+7680841 None:intergenic
GGAAAACCATCTGGGTCTAA+TGG 0.443061 2:-7679929 MsG0280006892.01.T01:CDS
GGGGAGTGAAGTGGATGAAG+GGG 0.444075 2:-7680149 MsG0280006892.01.T01:CDS
GTAATCTTCGTCAGAAAGAT+TGG 0.446554 2:-7680711 MsG0280006892.01.T01:CDS
AAGGGGATAAAGGGAGAGAA+GGG 0.448917 2:-7680132 MsG0280006892.01.T01:CDS
GAGAGAAGGGATGAAGAGGT+TGG 0.450498 2:-7680119 MsG0280006892.01.T01:CDS
TCCCCGTTCGCGAGGATTGT+TGG 0.451755 2:-7680798 MsG0280006892.01.T01:CDS
GGCGGTGACACCGTCGCCTC+CGG 0.452209 2:-7680455 MsG0280006892.01.T01:CDS
ATCAGCTTCCGCAGCAGCAG+CGG 0.459138 2:+7680246 None:intergenic
GTGGAAGTAGAGGAAGAGGA+AGG 0.466313 2:-7680175 MsG0280006892.01.T01:CDS
TGATGAGGTGGAGGAAGTTG+AGG 0.467170 2:-7680206 MsG0280006892.01.T01:CDS
AGTAGAGGAAGAGGAAGGGA+GGG 0.467532 2:-7680170 MsG0280006892.01.T01:CDS
GAAGTTATCAATTTCTTCAC+CGG 0.471334 2:-7680479 MsG0280006892.01.T01:CDS
GATGCTGTTAACGCTCTTCA+TGG 0.472381 2:-7680676 MsG0280006892.01.T01:CDS
GCTAGGGTTACGGAATCTAA+TGG 0.474097 2:-7680571 MsG0280006892.01.T01:CDS
ACTGCTACGGTGATGGATGA+TGG 0.479955 2:-7680304 MsG0280006892.01.T01:CDS
GGAGGAAGAGGTGGAAGTAG+AGG 0.482006 2:-7680185 MsG0280006892.01.T01:CDS
GAAGGGGATAAAGGGAGAGA+AGG 0.489329 2:-7680133 MsG0280006892.01.T01:CDS
GGAAGTTGAGGAGGAAGAGG+TGG 0.492049 2:-7680194 MsG0280006892.01.T01:CDS
AAGGGAGAGAAGGGATGAAG+AGG 0.497380 2:-7680123 MsG0280006892.01.T01:CDS
TATGGATACTCAAGTTCAGC+TGG 0.498348 2:-7679966 MsG0280006892.01.T01:CDS
TGCTGCTGCGGAAGCTGATG+AGG 0.500517 2:-7680242 MsG0280006892.01.T01:CDS
TGGAAGTAGAGGAAGAGGAA+GGG 0.505354 2:-7680174 MsG0280006892.01.T01:CDS
CGGAAATTTGCTAATTCTGG+TGG 0.506455 2:-7680409 MsG0280006892.01.T01:CDS
CTCTTCCGTTGATTCCTCAT+CGG 0.506683 2:-7680429 MsG0280006892.01.T01:CDS
CGTGGCTGCGGCTACTGCTA+CGG 0.507470 2:-7680317 MsG0280006892.01.T01:CDS
TGCGGCTACTGCTACGGTGA+TGG 0.518450 2:-7680311 MsG0280006892.01.T01:CDS
GGCGACGGTGTCACCGCCAC+CGG 0.524853 2:+7680460 None:intergenic
GAATTATTCTGCCGTGGCTG+CGG 0.538446 2:-7680329 MsG0280006892.01.T01:CDS
TGAGGTGGAGGAAGTTGAGG+AGG 0.539115 2:-7680203 MsG0280006892.01.T01:CDS
TGGTGAAATGTATGAGAGAG+TGG 0.540008 2:-7680077 MsG0280006892.01.T01:CDS
CTGCTACGGTGATGGATGAT+GGG 0.544392 2:-7680303 MsG0280006892.01.T01:CDS
GGAAGAGCCACCGGAGGCGA+CGG 0.553904 2:+7680445 None:intergenic
ACAATCCTCGCGAACGGGGA+CGG 0.571999 2:+7680801 None:intergenic
TCGTCGATGCATGGGGTCGT+CGG 0.574131 2:-7680753 MsG0280006892.01.T01:CDS
CGTAGCAGTAGCCGCAGCCA+CGG 0.576525 2:+7680318 None:intergenic
TGACCAACAATCCTCGCGAA+CGG 0.577799 2:+7680795 None:intergenic
CTAAAGATCTTGAAGTGCAG+AGG 0.579375 2:-7680000 MsG0280006892.01.T01:CDS
GGAATCAACGGAAGAGCCAC+CGG 0.582868 2:+7680436 None:intergenic
TGATGAGGATGATGAGGTGG+AGG 0.584183 2:-7680215 MsG0280006892.01.T01:CDS
ATCTCACCATTAGACCCAGA+TGG 0.584691 2:+7679923 None:intergenic
TTATTCATCACCTGCAATTG+CGG 0.591019 2:-7680386 MsG0280006892.01.T01:CDS
CGAACGGGGACGGTGCGTGA+CGG 0.602447 2:+7680811 None:intergenic
GCAGAATAATTCCTCTTCTG+AGG 0.603793 2:+7680340 None:intergenic
TGGTGGATTTGGAGAAACAA+AGG 0.604782 2:-7680033 MsG0280006892.01.T01:CDS
ACGGGGACGGTGCGTGACGG+TGG 0.605580 2:+7680814 None:intergenic
ACCCCATGCATCGACGAGAG+TGG 0.606737 2:+7680759 None:intergenic
ACGCACCGTCCCCGTTCGCG+AGG 0.609985 2:-7680806 MsG0280006892.01.T01:CDS
TGATGATGAGGATGATGAGG+TGG 0.613041 2:-7680218 MsG0280006892.01.T01:CDS
GAAGAGGAATTATTCTGCCG+TGG 0.613185 2:-7680335 MsG0280006892.01.T01:CDS
TCGTGGTGAAAATCCGGCAT+CGG 0.613818 2:+7680847 None:intergenic
ACAGAAACTGAGGCAGATGG+TGG 0.614677 2:-7680050 MsG0280006892.01.T01:CDS
GGTGACACCGTCGCCTCCGG+TGG 0.615400 2:-7680452 MsG0280006892.01.T01:CDS
AATTTCCGATGAGGAATCAA+CGG 0.616061 2:+7680424 None:intergenic
AGGGATGAAGAGGTTGGCGA+AGG 0.617802 2:-7680113 MsG0280006892.01.T01:CDS
CGGTGGCGTTACCTCAGAAG+AGG 0.617929 2:-7680351 MsG0280006892.01.T01:CDS
GTTATCAATTTCTTCACCGG+TGG 0.628483 2:-7680476 MsG0280006892.01.T01:CDS
GAGTGGAAGAACAGAAACTG+AGG 0.631673 2:-7680060 MsG0280006892.01.T01:CDS
AGAACAGAAACTGAGGCAGA+TGG 0.635950 2:-7680053 MsG0280006892.01.T01:CDS
TCCACTCTCGTCGATGCATG+GGG 0.638750 2:-7680760 MsG0280006892.01.T01:CDS
TGCGGTACATTCCACCGCGG+TGG 0.640964 2:-7680368 MsG0280006892.01.T01:CDS
GAATTAGCAAATTTCCGATG+AGG 0.643473 2:+7680415 None:intergenic
CTGAGGTAACGCCACCGCGG+TGG 0.646102 2:+7680357 None:intergenic
TTAAGCGTGGAAAACCATCT+GGG 0.647441 2:-7679937 MsG0280006892.01.T01:CDS
ATCAACGGAAGAGCCACCGG+AGG 0.652573 2:+7680439 None:intergenic
AGCTGATGAGGATGATGATG+AGG 0.655311 2:-7680230 MsG0280006892.01.T01:CDS
ACCAACAATCCTCGCGAACG+GGG 0.660501 2:+7680797 None:intergenic
CTTTCTGACGAAGATTACCA+CGG 0.666897 2:+7680716 None:intergenic
GGATGATGATGAGGATGATG+AGG 0.668977 2:-7680221 MsG0280006892.01.T01:CDS
CGGTATCTTGAACTCAACCG+TGG 0.727584 2:-7680733 MsG0280006892.01.T01:CDS
CAGCTGGAGAGAATTAAGCG+TGG 0.736726 2:-7679950 MsG0280006892.01.T01:CDS
CTTCTGAGGTAACGCCACCG+CGG 0.741340 2:+7680354 None:intergenic
ACGGTGGTGTGAAAGAATCG+TGG 0.749435 2:+7680830 None:intergenic
AATTGCGGTACATTCCACCG+CGG 0.821763 2:-7680371 MsG0280006892.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACGATTAAGAAAAAGTATA+AGG - Chr2:7680161-7680180 MsG0280006892.01.T01:CDS 20.0%
!!! ATGGTGTTTTGAATTCTAAT+TGG - Chr2:7680211-7680230 MsG0280006892.01.T01:CDS 25.0%
ACATCTAACCGTTCAAAAAA+AGG + Chr2:7680237-7680256 None:intergenic 30.0%
AGTATAAGGTTGAAAAAGCT+AGG - Chr2:7680175-7680194 MsG0280006892.01.T01:CDS 30.0%
GAAGTTATCAATTTCTTCAC+CGG - Chr2:7680284-7680303 MsG0280006892.01.T01:CDS 30.0%
GTATAAGGTTGAAAAAGCTA+GGG - Chr2:7680176-7680195 MsG0280006892.01.T01:CDS 30.0%
! AACTTCTTAGCACTGAAATT+AGG + Chr2:7680270-7680289 None:intergenic 30.0%
!! TTTTAGGAGGAATTATTCTG+CGG - Chr2:7680485-7680504 MsG0280006892.01.T01:CDS 30.0%
!!! CTAATTGGCCTTTTTTTGAA+CGG - Chr2:7680226-7680245 MsG0280006892.01.T01:CDS 30.0%
AAAGAATCGTGGTGAAAATC+CGG + Chr2:7679925-7679944 None:intergenic 35.0%
AATTTCCGATGAGGAATCAA+CGG + Chr2:7680342-7680361 None:intergenic 35.0%
GAATTAGCAAATTTCCGATG+AGG + Chr2:7680351-7680370 None:intergenic 35.0%
GTAATCTTCGTCAGAAAGAT+TGG - Chr2:7680052-7680071 MsG0280006892.01.T01:CDS 35.0%
TTATTCATCACCTGCAATTG+CGG - Chr2:7680377-7680396 MsG0280006892.01.T01:CDS 35.0%
!! CATCGGAAATTTGCTAATTC+TGG - Chr2:7680351-7680370 MsG0280006892.01.T01:CDS 35.0%
!!! GAACGGTTAGATGTTTTGAT+TGG - Chr2:7680243-7680262 MsG0280006892.01.T01:CDS 35.0%
!!! TGATGGATGATGGGTATTTT+AGG - Chr2:7680469-7680488 MsG0280006892.01.T01:CDS 35.0%
AAGTGGATGAAGGGGATAAA+GGG - Chr2:7680622-7680641 MsG0280006892.01.T01:CDS 40.0%
ATTAAGCGTGGAAAACCATC+TGG - Chr2:7680825-7680844 MsG0280006892.01.T01:CDS 40.0%
CTAAAGATCTTGAAGTGCAG+AGG - Chr2:7680763-7680782 MsG0280006892.01.T01:CDS 40.0%
CTTTCTGACGAAGATTACCA+CGG + Chr2:7680050-7680069 None:intergenic 40.0%
GCAGAATAATTCCTCTTCTG+AGG + Chr2:7680426-7680445 None:intergenic 40.0%
GGTTGAAAAAGCTAGGGTTA+CGG - Chr2:7680182-7680201 MsG0280006892.01.T01:CDS 40.0%
GTTATCAATTTCTTCACCGG+TGG - Chr2:7680287-7680306 MsG0280006892.01.T01:CDS 40.0%
TATGGATACTCAAGTTCAGC+TGG - Chr2:7680797-7680816 MsG0280006892.01.T01:CDS 40.0%
TGGTGAAATGTATGAGAGAG+TGG - Chr2:7680686-7680705 MsG0280006892.01.T01:CDS 40.0%
TTAAGCGTGGAAAACCATCT+GGG - Chr2:7680826-7680845 MsG0280006892.01.T01:CDS 40.0%
! ATCTGTGCGATGAGTTTTCT+TGG + Chr2:7680118-7680137 None:intergenic 40.0%
!! CGGAAATTTGCTAATTCTGG+TGG - Chr2:7680354-7680373 MsG0280006892.01.T01:CDS 40.0%
!! TGGTGGATTTGGAGAAACAA+AGG - Chr2:7680730-7680749 MsG0280006892.01.T01:CDS 40.0%
!!! TGGATGATGGGTATTTTAGG+AGG - Chr2:7680472-7680491 MsG0280006892.01.T01:CDS 40.0%
AAGGGGATAAAGGGAGAGAA+GGG - Chr2:7680631-7680650 MsG0280006892.01.T01:CDS 45.0%
AGAACAGAAACTGAGGCAGA+TGG - Chr2:7680710-7680729 MsG0280006892.01.T01:CDS 45.0%
ATCAATTTCTTCACCGGTGG+CGG - Chr2:7680290-7680309 MsG0280006892.01.T01:CDS 45.0%
ATCTCACCATTAGACCCAGA+TGG + Chr2:7680843-7680862 None:intergenic 45.0%
GAAGAGGAATTATTCTGCCG+TGG - Chr2:7680428-7680447 MsG0280006892.01.T01:CDS 45.0%
GAAGTGGATGAAGGGGATAA+AGG - Chr2:7680621-7680640 MsG0280006892.01.T01:CDS 45.0%
GAGTGGAAGAACAGAAACTG+AGG - Chr2:7680703-7680722 MsG0280006892.01.T01:CDS 45.0%
GATGCTGTTAACGCTCTTCA+TGG - Chr2:7680087-7680106 MsG0280006892.01.T01:CDS 45.0%
GCAGAGGATGCAGATGTTTA+TGG - Chr2:7680779-7680798 MsG0280006892.01.T01:CDS 45.0%
GCTAGGGTTACGGAATCTAA+TGG - Chr2:7680192-7680211 MsG0280006892.01.T01:CDS 45.0%
GGAAAACCATCTGGGTCTAA+TGG - Chr2:7680834-7680853 MsG0280006892.01.T01:CDS 45.0%
TGGAAGTAGAGGAAGAGGAA+GGG - Chr2:7680589-7680608 MsG0280006892.01.T01:CDS 45.0%
! AGCTGATGAGGATGATGATG+AGG - Chr2:7680533-7680552 MsG0280006892.01.T01:CDS 45.0%
! GGATGATGATGAGGATGATG+AGG - Chr2:7680542-7680561 MsG0280006892.01.T01:CDS 45.0%
! TGATGATGAGGATGATGAGG+TGG - Chr2:7680545-7680564 MsG0280006892.01.T01:CDS 45.0%
!! CTCTTCCGTTGATTCCTCAT+CGG - Chr2:7680334-7680353 MsG0280006892.01.T01:CDS 45.0%
AAGGGAGAGAAGGGATGAAG+AGG - Chr2:7680640-7680659 MsG0280006892.01.T01:CDS 50.0%
AAGTAGAGGAAGAGGAAGGG+AGG - Chr2:7680592-7680611 MsG0280006892.01.T01:CDS 50.0%
AATTGCGGTACATTCCACCG+CGG - Chr2:7680392-7680411 MsG0280006892.01.T01:CDS 50.0%
ACAGAAACTGAGGCAGATGG+TGG - Chr2:7680713-7680732 MsG0280006892.01.T01:CDS 50.0%
ACGGTGGTGTGAAAGAATCG+TGG + Chr2:7679936-7679955 None:intergenic 50.0%
AGAGGTGGAAGTAGAGGAAG+AGG - Chr2:7680584-7680603 MsG0280006892.01.T01:CDS 50.0%
AGTAGAGGAAGAGGAAGGGA+GGG - Chr2:7680593-7680612 MsG0280006892.01.T01:CDS 50.0%
CAGCTGGAGAGAATTAAGCG+TGG - Chr2:7680813-7680832 MsG0280006892.01.T01:CDS 50.0%
CGGTATCTTGAACTCAACCG+TGG - Chr2:7680030-7680049 MsG0280006892.01.T01:CDS 50.0%
GAAGGGGATAAAGGGAGAGA+AGG - Chr2:7680630-7680649 MsG0280006892.01.T01:CDS 50.0%
GAATTATTCTGCCGTGGCTG+CGG - Chr2:7680434-7680453 MsG0280006892.01.T01:CDS 50.0%
GAGAGAAGGGATGAAGAGGT+TGG - Chr2:7680644-7680663 MsG0280006892.01.T01:CDS 50.0%
GTGGAAGTAGAGGAAGAGGA+AGG - Chr2:7680588-7680607 MsG0280006892.01.T01:CDS 50.0%
GTGGAATGTACCGCAATTGC+AGG + Chr2:7680390-7680409 None:intergenic 50.0%
TGACCAACAATCCTCGCGAA+CGG + Chr2:7679971-7679990 None:intergenic 50.0%
TGATGAGGATGATGAGGTGG+AGG - Chr2:7680548-7680567 MsG0280006892.01.T01:CDS 50.0%
TGATGAGGTGGAGGAAGTTG+AGG - Chr2:7680557-7680576 MsG0280006892.01.T01:CDS 50.0%
TTCCACTCTCGTCGATGCAT+GGG - Chr2:7680002-7680021 MsG0280006892.01.T01:CDS 50.0%
! GCGAAGGCGATAGAGAGTTT+TGG - Chr2:7680666-7680685 MsG0280006892.01.T01:CDS 50.0%
!! ACTGAGGCAGATGGTGGATT+TGG - Chr2:7680719-7680738 MsG0280006892.01.T01:CDS 50.0%
!! ACTGCTACGGTGATGGATGA+TGG - Chr2:7680459-7680478 MsG0280006892.01.T01:CDS 50.0%
!! CTGCTACGGTGATGGATGAT+GGG - Chr2:7680460-7680479 MsG0280006892.01.T01:CDS 50.0%
ACCAACAATCCTCGCGAACG+GGG + Chr2:7679969-7679988 None:intergenic 55.0%
AGGGATGAAGAGGTTGGCGA+AGG - Chr2:7680650-7680669 MsG0280006892.01.T01:CDS 55.0%
AGGGGGAGTGAAGTGGATGA+AGG - Chr2:7680612-7680631 MsG0280006892.01.T01:CDS 55.0%
CTTCCACTCTCGTCGATGCA+TGG - Chr2:7680001-7680020 MsG0280006892.01.T01:CDS 55.0%
GACCAACAATCCTCGCGAAC+GGG + Chr2:7679970-7679989 None:intergenic 55.0%
GGAAGTTGAGGAGGAAGAGG+TGG - Chr2:7680569-7680588 MsG0280006892.01.T01:CDS 55.0%
GGAATCAACGGAAGAGCCAC+CGG + Chr2:7680330-7680349 None:intergenic 55.0%
GGAGGAAGAGGTGGAAGTAG+AGG - Chr2:7680578-7680597 MsG0280006892.01.T01:CDS 55.0%
GGAGGAAGTTGAGGAGGAAG+AGG - Chr2:7680566-7680585 MsG0280006892.01.T01:CDS 55.0%
GGGGAGTGAAGTGGATGAAG+GGG - Chr2:7680614-7680633 MsG0280006892.01.T01:CDS 55.0%
GGGGGAGTGAAGTGGATGAA+GGG - Chr2:7680613-7680632 MsG0280006892.01.T01:CDS 55.0%
GTAGAGGAAGAGGAAGGGAG+GGG - Chr2:7680594-7680613 MsG0280006892.01.T01:CDS 55.0%
TAGAGGAAGAGGAAGGGAGG+GGG - Chr2:7680595-7680614 MsG0280006892.01.T01:CDS 55.0%
TCCACTCTCGTCGATGCATG+GGG - Chr2:7680003-7680022 MsG0280006892.01.T01:CDS 55.0%
TGAGGTGGAGGAAGTTGAGG+AGG - Chr2:7680560-7680579 MsG0280006892.01.T01:CDS 55.0%
ACAATCCTCGCGAACGGGGA+CGG + Chr2:7679965-7679984 None:intergenic 60.0%
ATCAACGGAAGAGCCACCGG+AGG + Chr2:7680327-7680346 None:intergenic 60.0%
ATCAGCTTCCGCAGCAGCAG+CGG + Chr2:7680520-7680539 None:intergenic 60.0%
CGGTGGCGTTACCTCAGAAG+AGG - Chr2:7680412-7680431 MsG0280006892.01.T01:CDS 60.0%
TCCCCGTTCGCGAGGATTGT+TGG - Chr2:7679965-7679984 MsG0280006892.01.T01:CDS 60.0%
TCGTCGATGCATGGGGTCGT+CGG - Chr2:7680010-7680029 MsG0280006892.01.T01:CDS 60.0%
TGCGGCTACTGCTACGGTGA+TGG - Chr2:7680452-7680471 MsG0280006892.01.T01:CDS 60.0%
TGCTGCTGCGGAAGCTGATG+AGG - Chr2:7680521-7680540 MsG0280006892.01.T01:CDS 60.0%
! ACCCCATGCATCGACGAGAG+TGG + Chr2:7680007-7680026 None:intergenic 60.0%
!! CTTCTGAGGTAACGCCACCG+CGG + Chr2:7680412-7680431 None:intergenic 60.0%
CGTAGCAGTAGCCGCAGCCA+CGG + Chr2:7680448-7680467 None:intergenic 65.0%
CGTGGCTGCGGCTACTGCTA+CGG - Chr2:7680446-7680465 MsG0280006892.01.T01:CDS 65.0%
GGAAGGGAGGGGGAGTGAAG+TGG - Chr2:7680605-7680624 MsG0280006892.01.T01:CDS 65.0%
TGCGGTACATTCCACCGCGG+TGG - Chr2:7680395-7680414 MsG0280006892.01.T01:CDS 65.0%
AGCTGCAGCCGCTGCTGCTG+CGG - Chr2:7680509-7680528 MsG0280006892.01.T01:CDS 70.0%
CGAACGGGGACGGTGCGTGA+CGG + Chr2:7679955-7679974 None:intergenic 70.0%
CTGAGGTAACGCCACCGCGG+TGG + Chr2:7680409-7680428 None:intergenic 70.0%
GGAAGAGCCACCGGAGGCGA+CGG + Chr2:7680321-7680340 None:intergenic 70.0%
ACGCACCGTCCCCGTTCGCG+AGG - Chr2:7679957-7679976 MsG0280006892.01.T01:CDS 75.0%
ACGGGGACGGTGCGTGACGG+TGG + Chr2:7679952-7679971 None:intergenic 75.0%
GGCGGTGACACCGTCGCCTC+CGG - Chr2:7680308-7680327 MsG0280006892.01.T01:CDS 75.0%
GGTGACACCGTCGCCTCCGG+TGG - Chr2:7680311-7680330 MsG0280006892.01.T01:CDS 75.0%
!! GGCGACGGTGTCACCGCCAC+CGG + Chr2:7680306-7680325 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr2 gene 7679919 7680866 7679919 ID=MsG0280006892.01;Name=MsG0280006892.01
Chr2 mRNA 7679919 7680866 7679919 ID=MsG0280006892.01.T01;Parent=MsG0280006892.01;Name=MsG0280006892.01.T01;_AED=0.41;_eAED=0.41;_QI=0|-1|0|1|-1|1|1|0|315
Chr2 exon 7679919 7680866 7679919 ID=MsG0280006892.01.T01:exon:24221;Parent=MsG0280006892.01.T01
Chr2 CDS 7679919 7680866 7679919 ID=MsG0280006892.01.T01:cds;Parent=MsG0280006892.01.T01
Gene Sequence

>MsG0280006892.01.T01

ATGCCGGATTTTCACCACGATTCTTTCACACCACCGTCACGCACCGTCCCCGTTCGCGAGGATTGTTGGTCAGAAGAAGCTTCTTCCACTCTCGTCGATGCATGGGGTCGTCGGTATCTTGAACTCAACCGTGGTAATCTTCGTCAGAAAGATTGGCAAGATGTTGCTGATGCTGTTAACGCTCTTCATGGTCATACCAAGAAAACTCATCGCACAGATGTTCAGTGTAAGAATCGAATCGATACGATTAAGAAAAAGTATAAGGTTGAAAAAGCTAGGGTTACGGAATCTAATGGTGTTTTGAATTCTAATTGGCCTTTTTTTGAACGGTTAGATGTTTTGATTGGACCTAATTTCAGTGCTAAGAAGTTATCAATTTCTTCACCGGTGGCGGTGACACCGTCGCCTCCGGTGGCTCTTCCGTTGATTCCTCATCGGAAATTTGCTAATTCTGGTGGTTATTCATCACCTGCAATTGCGGTACATTCCACCGCGGTGGCGTTACCTCAGAAGAGGAATTATTCTGCCGTGGCTGCGGCTACTGCTACGGTGATGGATGATGGGTATTTTAGGAGGAATTATTCTGCGGTAGCTGCAGCCGCTGCTGCTGCGGAAGCTGATGAGGATGATGATGAGGATGATGAGGTGGAGGAAGTTGAGGAGGAAGAGGTGGAAGTAGAGGAAGAGGAAGGGAGGGGGAGTGAAGTGGATGAAGGGGATAAAGGGAGAGAAGGGATGAAGAGGTTGGCGAAGGCGATAGAGAGTTTTGGTGAAATGTATGAGAGAGTGGAAGAACAGAAACTGAGGCAGATGGTGGATTTGGAGAAACAAAGGATGCAGTTTGCTAAAGATCTTGAAGTGCAGAGGATGCAGATGTTTATGGATACTCAAGTTCAGCTGGAGAGAATTAAGCGTGGAAAACCATCTGGGTCTAATGGTGAGATATAA

Protein sequence

>MsG0280006892.01.T01

MPDFHHDSFTPPSRTVPVREDCWSEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKVEKARVTESNGVLNSNWPFFERLDVLIGPNFSAKKLSISSPVAVTPSPPVALPLIPHRKFANSGGYSSPAIAVHSTAVALPQKRNYSAVAAATATVMDDGYFRRNYSAVAAAAAAAEADEDDDEDDEVEEVEEEEVEVEEEEGRGSEVDEGDKGREGMKRLAKAIESFGEMYERVEEQKLRQMVDLEKQRMQFAKDLEVQRMQMFMDTQVQLERIKRGKPSGSNGEI*