AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003190.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003190.01.T01 MTR_1g055315 66.667 273 60 7 16 272 1 258 8.61e-108 325
MsG0180003190.01.T01 MTR_7g106640 49.286 280 106 6 16 272 1 267 5.71e-73 236
MsG0180003190.01.T01 MTR_7g106640 49.286 280 106 6 16 272 1 267 2.19e-72 236
MsG0180003190.01.T01 MTR_1g055315 64.407 177 40 5 112 272 24 193 1.67e-65 214
MsG0180003190.01.T01 MTR_7g106640 48.588 177 61 4 119 272 1 170 6.09e-46 164
MsG0180003190.01.T01 MTR_7g106640 59.000 100 39 1 175 272 1 100 2.02e-31 123
MsG0180003190.01.T01 MTR_2g066850 63.235 68 24 1 174 240 776 843 5.55e-18 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003190.01.T01 AT5G06440 40.659 273 129 9 16 272 1 256 3.63e-54 179
MsG0180003190.01.T01 AT5G06440 40.659 273 129 9 16 272 1 256 1.03e-52 179
MsG0180003190.01.T01 AT5G06440 40.659 273 129 9 16 272 1 256 1.03e-52 179
MsG0180003190.01.T01 AT5G06440 38.571 280 132 8 16 272 1 263 1.69e-49 171
MsG0180003190.01.T01 AT3G11720 34.799 273 140 9 16 272 1 251 7.39e-42 152
MsG0180003190.01.T01 AT3G11720 34.799 273 140 9 16 272 1 251 7.39e-42 152
MsG0180003190.01.T01 AT3G11720 34.799 273 140 9 16 272 55 305 2.39e-41 151
MsG0180003190.01.T01 AT5G06440 45.198 177 78 7 112 272 9 182 1.25e-37 138
MsG0180003190.01.T01 AT5G06440 44.706 170 75 7 119 272 1 167 3.39e-35 131
MsG0180003190.01.T01 AT3G11720 37.647 170 78 7 119 272 1 158 2.91e-27 110

Find 70 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCATCATGGGGACCCTTTC+TGG 0.166923 1:-58137101 MsG0180003190.01.T01:CDS
TCTCATTGTTTAAGTATCTT+AGG 0.242637 1:+58135644 None:intergenic
TCTAACTTTCTTGATATGTT+AGG 0.305134 1:-58138767 MsG0180003190.01.T01:CDS
AATTGTTGTTCTTACGAATT+CGG 0.343897 1:-58137239 MsG0180003190.01.T01:intron
ATGAAATGGACAAATGCTTC+TGG 0.368151 1:+58135727 None:intergenic
CCCATGATGCTCTTTGACTC+AGG 0.369252 1:+58137113 None:intergenic
TCCCTTTCATACAATGTTAG+TGG 0.371335 1:-58138289 MsG0180003190.01.T01:CDS
ACGAAAGATTGTGCAGTATA+GGG 0.388133 1:-58139283 MsG0180003190.01.T01:CDS
AACTTTCCTTTAAGATTGAA+TGG 0.393604 1:-58135772 MsG0180003190.01.T01:intron
CTCACGACATCCTTCACTTC+AGG 0.396279 1:+58137059 None:intergenic
TTCTCCATCTTTGCACACTT+TGG 0.400258 1:+58139309 None:intergenic
AAAGTATGTTATTCACTCTC+TGG 0.405589 1:-58138696 MsG0180003190.01.T01:CDS
TTTCGTGGCCTCTGTCTTCA+AGG 0.415130 1:-58137309 MsG0180003190.01.T01:CDS
CTAATACATCACAAAATGAT+TGG 0.417293 1:-58138719 MsG0180003190.01.T01:CDS
GTTTACAGAAGGTTCAGATT+GGG 0.421792 1:-58137456 MsG0180003190.01.T01:CDS
AACGAAAGATTGTGCAGTAT+AGG 0.423682 1:-58139284 MsG0180003190.01.T01:CDS
ATTCAATAGAGTGGATGAAA+TGG 0.426208 1:+58135713 None:intergenic
ATCTCAACATTTGTAAGATC+AGG 0.432552 1:+58139234 None:intergenic
CTGATATGACATTTGAGAAA+AGG 0.433698 1:-58139335 MsG0180003190.01.T01:CDS
CATCAGAAAGAAGTTACTTT+CGG 0.436473 1:-58136998 MsG0180003190.01.T01:intron
TGTAACTTACAAACATCAAC+AGG 0.449928 1:+58138249 None:intergenic
GGATGTCGTGAGAGTTGATT+TGG 0.451455 1:-58137048 MsG0180003190.01.T01:CDS
TGTTTACAGAAGGTTCAGAT+TGG 0.455542 1:-58137457 MsG0180003190.01.T01:CDS
GCTTCCAAAGTGTGCAAAGA+TGG 0.456225 1:-58139313 MsG0180003190.01.T01:CDS
TCATCTTCTAATTCTGATGA+TGG 0.467744 1:+58139180 None:intergenic
AATGTTAGTGGAAGGCTTTG+TGG 0.487941 1:-58138277 MsG0180003190.01.T01:CDS
TTCCACTAACATTGTATGAA+AGG 0.498448 1:+58138287 None:intergenic
CCTGAGTCAAAGAGCATCAT+GGG 0.500756 1:-58137113 MsG0180003190.01.T01:CDS
CCCTGAGTCAAAGAGCATCA+TGG 0.515376 1:-58137114 MsG0180003190.01.T01:CDS
CTTCTAATTCTGATGATGGT+AGG 0.520149 1:+58139184 None:intergenic
TCCACTAACATTGTATGAAA+GGG 0.522752 1:+58138288 None:intergenic
TTTCATACAATGTTAGTGGA+AGG 0.533564 1:-58138285 MsG0180003190.01.T01:CDS
TTTACAGAAGGTTCAGATTG+GGG 0.534340 1:-58137455 MsG0180003190.01.T01:CDS
GTATGAAAGGGAGTTCCCTC+CGG 0.540998 1:+58138300 None:intergenic
ATCATGTGAATGTTTACAGA+AGG 0.541962 1:-58137467 MsG0180003190.01.T01:CDS
AAGAAAGGATGAAGGTTTCG+TGG 0.545994 1:-58137324 MsG0180003190.01.T01:CDS
CCATGATGCTCTTTGACTCA+GGG 0.548096 1:+58137114 None:intergenic
GGGAGGCTTTGCTTTGCAGA+AGG 0.548882 1:-58137024 MsG0180003190.01.T01:CDS
CGTCATCGTTGAAACCAGAA+AGG 0.550675 1:+58137087 None:intergenic
TTGTAAGATCAGGTGAGGCA+AGG 0.553784 1:+58139244 None:intergenic
TTCGTGGCCTCTGTCTTCAA+GGG 0.555222 1:-58137308 MsG0180003190.01.T01:CDS
AGGAGTACTTCAGATGATCA+TGG 0.561184 1:-58138747 MsG0180003190.01.T01:CDS
AAATATAGAAAATGACATGA+AGG 0.565745 1:+58135668 None:intergenic
TAGAAAATGACATGAAGGTG+AGG 0.571250 1:+58135673 None:intergenic
TGTAAGATCAGGTGAGGCAA+GGG 0.572242 1:+58139245 None:intergenic
AATCACAAGATTCAATAGAG+TGG 0.574390 1:+58135704 None:intergenic
TCATCAGAATTAGAAGATGA+AGG 0.578946 1:-58139177 MsG0180003190.01.T01:CDS
GTCGTGAGAGTTGATTTGGT+GGG 0.584180 1:-58137044 MsG0180003190.01.T01:CDS
AGAAAATGACATGAAGGTGA+GGG 0.586864 1:+58135674 None:intergenic
TCAAATGTCATATCAGGCAT+AGG 0.590893 1:+58139342 None:intergenic
TGTTATGTATCGTGAAGGAC+CGG 0.595211 1:-58138319 MsG0180003190.01.T01:CDS
GAATTAGAAGATGAAGGTGG+TGG 0.595677 1:-58139171 MsG0180003190.01.T01:intron
GTGAGAGTTGATTTGGTGGG+AGG 0.607591 1:-58137041 MsG0180003190.01.T01:CDS
AATGCTTCTGGAATAACTTG+TGG 0.612377 1:+58135739 None:intergenic
TGACGCAATTCCTGAAGTGA+AGG 0.614940 1:-58137069 MsG0180003190.01.T01:CDS
TTCCGTGTTATGTATCGTGA+AGG 0.616474 1:-58138324 MsG0180003190.01.T01:CDS
AGATTGTGCAGTATAGGGAG+AGG 0.617001 1:-58139278 MsG0180003190.01.T01:CDS
TTAGTGGAAGGCTTTGTGGA+CGG 0.620121 1:-58138273 MsG0180003190.01.T01:CDS
AACATTTGTAAGATCAGGTG+AGG 0.620685 1:+58139239 None:intergenic
TGTCGTGAGAGTTGATTTGG+TGG 0.621107 1:-58137045 MsG0180003190.01.T01:CDS
GTACTTCAGATGATCATGGA+AGG 0.636905 1:-58138743 MsG0180003190.01.T01:CDS
GTCATCGTTGAAACCAGAAA+GGG 0.638872 1:+58137088 None:intergenic
TATGTATCGTGAAGGACCGG+AGG 0.650001 1:-58138316 MsG0180003190.01.T01:CDS
AAAGTAGGAATTGTAGACTG+AGG 0.661096 1:+58137499 None:intergenic
ATGTATCGTGAAGGACCGGA+GGG 0.674262 1:-58138315 MsG0180003190.01.T01:CDS
ACAGCTTCCCTTGAAGACAG+AGG 0.696879 1:+58137301 None:intergenic
TCAGAATTAGAAGATGAAGG+TGG 0.714216 1:-58139174 MsG0180003190.01.T01:CDS
ATTCGTAGAACATAAAACTG+CGG 0.718959 1:-58138795 MsG0180003190.01.T01:CDS
CTGAGTCAAAGAGCATCATG+GGG 0.725417 1:-58137112 MsG0180003190.01.T01:CDS
GTCCTTCACGATACATAACA+CGG 0.728304 1:+58138322 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGTTAAAAGAAAATTAA+TGG - Chr1:58137834-58137853 MsG0180003190.01.T01:intron 10.0%
!! TACATATATAAGAAACAAAA+CGG + Chr1:58135756-58135775 None:intergenic 15.0%
!!! GTAACATTCTTTTATTATTT+TGG - Chr1:58135240-58135259 MsG0180003190.01.T01:intron 15.0%
!!! TATTTTACTAATTGTATGTT+TGG - Chr1:58135548-58135567 MsG0180003190.01.T01:intron 15.0%
!!! TTCAATAATTGAAATTTTGT+AGG - Chr1:58137613-58137632 MsG0180003190.01.T01:intron 15.0%
!! AAATATAGAAAATGACATGA+AGG + Chr1:58138724-58138743 None:intergenic 20.0%
!! AATTTACCATTCAATCTTAA+AGG + Chr1:58138626-58138645 None:intergenic 20.0%
!! ACTTAAACATAATGACATTA+GGG - Chr1:58137428-58137447 MsG0180003190.01.T01:intron 20.0%
!! ATAGATAATTAAAGAATCCT+TGG + Chr1:58137902-58137921 None:intergenic 20.0%
!! GAAAGATTACAAAGAAAATA+AGG - Chr1:58137977-58137996 MsG0180003190.01.T01:intron 20.0%
!! GTTGTAACACATAATATAAA+AGG - Chr1:58136368-58136387 MsG0180003190.01.T01:intron 20.0%
!! TACTTAAACATAATGACATT+AGG - Chr1:58137427-58137446 MsG0180003190.01.T01:intron 20.0%
!! TAGATAATTAAAGAATCCTT+GGG + Chr1:58137901-58137920 None:intergenic 20.0%
!! TTCATTGATAAATCAACAAA+TGG - Chr1:58138009-58138028 MsG0180003190.01.T01:intron 20.0%
!!! ATAAAAGTTCATTTTCTTAG+AGG + Chr1:58137581-58137600 None:intergenic 20.0%
!!! ATAGTTTTTTGTTTGTTAGA+TGG - Chr1:58137951-58137970 MsG0180003190.01.T01:intron 20.0%
! AAAAATGAAAACCTTCAAAG+CGG + Chr1:58137018-58137037 None:intergenic 25.0%
! AATCTTAAGAATCACTGATA+AGG + Chr1:58138207-58138226 None:intergenic 25.0%
! AATGACGACAAAAATGTTAA+AGG + Chr1:58136328-58136347 None:intergenic 25.0%
! AATTAGACATACAAAACAGA+TGG + Chr1:58135804-58135823 None:intergenic 25.0%
! AATTTACTTGAATTGAGTGA+TGG - Chr1:58137471-58137490 MsG0180003190.01.T01:CDS 25.0%
! ACAAATATGTGACTAAATGT+TGG + Chr1:58138376-58138395 None:intergenic 25.0%
! ACATGCAATGAAAAATGAAA+AGG - Chr1:58137553-58137572 MsG0180003190.01.T01:intron 25.0%
! AGACTTCTCTTTACAAAAAA+TGG - Chr1:58136285-58136304 MsG0180003190.01.T01:intron 25.0%
! ATAGTCACATATAACATTGT+GGG - Chr1:58138575-58138594 MsG0180003190.01.T01:intron 25.0%
! ATATTTGTCTTACTTTCTTG+TGG - Chr1:58138339-58138358 MsG0180003190.01.T01:CDS 25.0%
! ATCTCTTAAGTCTAACTATT+AGG - Chr1:58138158-58138177 MsG0180003190.01.T01:intron 25.0%
! ATGAAAGTCATATACTTACT+AGG - Chr1:58138861-58138880 MsG0180003190.01.T01:intron 25.0%
! CAAATATGTGACTAAATGTT+GGG + Chr1:58138375-58138394 None:intergenic 25.0%
! CCTTGAAATAAAGTTTATCA+AGG + Chr1:58137680-58137699 None:intergenic 25.0%
! CTAAATGAACATTGTTAAAC+AGG + Chr1:58136866-58136885 None:intergenic 25.0%
! CTAATACATCACAAAATGAT+TGG - Chr1:58135670-58135689 MsG0180003190.01.T01:CDS 25.0%
! CTGTTTAACAATGTTCATTT+AGG - Chr1:58136864-58136883 MsG0180003190.01.T01:intron 25.0%
! GAAATAAAGTTTATCAAGGA+TGG + Chr1:58137676-58137695 None:intergenic 25.0%
! GAATAGACACATTTATGATA+AGG + Chr1:58138093-58138112 None:intergenic 25.0%
! GTCGTCATTATTTATACATA+AGG - Chr1:58136339-58136358 MsG0180003190.01.T01:intron 25.0%
! TATAGTCACATATAACATTG+TGG - Chr1:58138574-58138593 MsG0180003190.01.T01:intron 25.0%
! TATATGTTAATCAAGTAGTC+AGG + Chr1:58138558-58138577 None:intergenic 25.0%
! TCTAACTTTCTTGATATGTT+AGG - Chr1:58135622-58135641 MsG0180003190.01.T01:intron 25.0%
! TCTATTCCAAATCTTGTTAA+TGG - Chr1:58138106-58138125 MsG0180003190.01.T01:intron 25.0%
! TCTCATTGTTTAAGTATCTT+AGG + Chr1:58138748-58138767 None:intergenic 25.0%
! TGTAACTTAGAAGTGAAAAT+TGG + Chr1:58138790-58138809 None:intergenic 25.0%
! TGTAAGTTACATTAAAGCAA+TGG - Chr1:58136152-58136171 MsG0180003190.01.T01:intron 25.0%
! TTGCAATTTATGTACAATGT+TGG - Chr1:58135853-58135872 MsG0180003190.01.T01:intron 25.0%
! TTTAACAATGTTCATTTAGG+TGG - Chr1:58136867-58136886 MsG0180003190.01.T01:intron 25.0%
!! AAGTATCAGTTACACTTTTA+GGG + Chr1:58136832-58136851 None:intergenic 25.0%
!! AATTGTTGTTCTTACGAATT+CGG - Chr1:58137150-58137169 MsG0180003190.01.T01:intron 25.0%
!! CCTTGATAAACTTTATTTCA+AGG - Chr1:58137677-58137696 MsG0180003190.01.T01:intron 25.0%
!! TTTACCATATTTTCCACAAT+TGG - Chr1:58138262-58138281 MsG0180003190.01.T01:CDS 25.0%
!!! AACTTTCCTTTAAGATTGAA+TGG - Chr1:58138617-58138636 MsG0180003190.01.T01:intron 25.0%
!!! AATCTTGTTTTAGATGGTTT+AGG + Chr1:58138243-58138262 None:intergenic 25.0%
!!! CATGATAAGATTTTGAAAGT+AGG + Chr1:58136908-58136927 None:intergenic 25.0%
!!! GAGTTATTTTCATCATTTTC+AGG - Chr1:58136245-58136264 MsG0180003190.01.T01:intron 25.0%
!!! TCTGATTTTGTTCTGAATTT+TGG - Chr1:58137042-58137061 MsG0180003190.01.T01:CDS 25.0%
!!! TGGTAAAATCTTGTTTTAGA+TGG + Chr1:58138249-58138268 None:intergenic 25.0%
!!! TTACAGTTCTGAAATCATTT+AGG - Chr1:58135485-58135504 MsG0180003190.01.T01:intron 25.0%
!!! TTTAAACAATAGAGCATTGT+TGG + Chr1:58135899-58135918 None:intergenic 25.0%
!!! TTTGTAGTTTTGATACATTC+AGG - Chr1:58135461-58135480 MsG0180003190.01.T01:intron 25.0%
AAAGTATGTTATTCACTCTC+TGG - Chr1:58135693-58135712 MsG0180003190.01.T01:CDS 30.0%
AAATTCTCTTCAGAGAAATC+AGG - Chr1:58135827-58135846 MsG0180003190.01.T01:intron 30.0%
AACTATGAAAGTCACATTCT+AGG - Chr1:58135401-58135420 MsG0180003190.01.T01:intron 30.0%
AATCACAAGATTCAATAGAG+TGG + Chr1:58138688-58138707 None:intergenic 30.0%
ACATTGAAATGAACCAATTG+TGG + Chr1:58138278-58138297 None:intergenic 30.0%
ACCTGATTATGTTAAGCTTT+AGG - Chr1:58135954-58135973 MsG0180003190.01.T01:intron 30.0%
ATAAAGTTTATCAAGGATGG+AGG + Chr1:58137673-58137692 None:intergenic 30.0%
ATAATTAAAGAATCCTTGGG+AGG + Chr1:58137898-58137917 None:intergenic 30.0%
ATCAGCTATGACTCAATAAT+TGG + Chr1:58136004-58136023 None:intergenic 30.0%
ATCATGTGAATGTTTACAGA+AGG - Chr1:58136922-58136941 MsG0180003190.01.T01:intron 30.0%
ATCTCAACATTTGTAAGATC+AGG + Chr1:58135158-58135177 None:intergenic 30.0%
ATCTTCCATAAGTTTAGATC+CGG - Chr1:58135776-58135795 MsG0180003190.01.T01:intron 30.0%
ATTCAATAGAGTGGATGAAA+TGG + Chr1:58138679-58138698 None:intergenic 30.0%
ATTCGTAGAACATAAAACTG+CGG - Chr1:58135594-58135613 MsG0180003190.01.T01:intron 30.0%
CAATAGCGAATATGGATATA+AGG - Chr1:58137637-58137656 MsG0180003190.01.T01:intron 30.0%
CCAAGGTATAAATAACTTTC+AGG + Chr1:58136494-58136513 None:intergenic 30.0%
CCTGAAAGTTATTTATACCT+TGG - Chr1:58136491-58136510 MsG0180003190.01.T01:intron 30.0%
CTGATATGACATTTGAGAAA+AGG - Chr1:58135054-58135073 MsG0180003190.01.T01:intron 30.0%
CTTCATCATGCTAATTAACA+TGG - Chr1:58138889-58138908 MsG0180003190.01.T01:intron 30.0%
CTTCTACCAATAGTTAAAAC+AGG - Chr1:58136031-58136050 MsG0180003190.01.T01:intron 30.0%
GCTAAACCATTAACAAGATT+TGG + Chr1:58138115-58138134 None:intergenic 30.0%
TACCAATAGTTAAAACAGGA+TGG - Chr1:58136035-58136054 MsG0180003190.01.T01:intron 30.0%
TAGGGTAGTAAAAAAAGCTT+TGG + Chr1:58138065-58138084 None:intergenic 30.0%
TCAAATAAGTCAATCCAAGT+AGG - Chr1:58136806-58136825 MsG0180003190.01.T01:intron 30.0%
TCATCAGAATTAGAAGATGA+AGG - Chr1:58135212-58135231 MsG0180003190.01.T01:intron 30.0%
TCATCTTCTAATTCTGATGA+TGG + Chr1:58135212-58135231 None:intergenic 30.0%
TCCACTAACATTGTATGAAA+GGG + Chr1:58136104-58136123 None:intergenic 30.0%
TCCTAAAGCTTAACATAATC+AGG + Chr1:58135958-58135977 None:intergenic 30.0%
TCTAACCATATGATTCAGTT+TGG + Chr1:58135359-58135378 None:intergenic 30.0%
TCTAAGTAACTTTATCGCTA+AGG - Chr1:58136527-58136546 MsG0180003190.01.T01:intron 30.0%
TGAACCAATTGTGGAAAATA+TGG + Chr1:58138269-58138288 None:intergenic 30.0%
TGATAAAGAAGAATTCAGCA+AGG - Chr1:58139083-58139102 MsG0180003190.01.T01:intron 30.0%
TGTAACTTACAAACATCAAC+AGG + Chr1:58136143-58136162 None:intergenic 30.0%
TGTCTTCTGCTAGTAATTTA+TGG - Chr1:58135332-58135351 MsG0180003190.01.T01:intron 30.0%
TGTGACTTTCATAGTTAGTT+TGG + Chr1:58135397-58135416 None:intergenic 30.0%
TTAAACTGTTATATCCGAAG+AGG + Chr1:58136554-58136573 None:intergenic 30.0%
TTAAGAATCACTGATAAGGA+AGG + Chr1:58138203-58138222 None:intergenic 30.0%
TTCCACTAACATTGTATGAA+AGG + Chr1:58136105-58136124 None:intergenic 30.0%
TTGAACATCGCATTACTATT+TGG - Chr1:58138989-58139008 MsG0180003190.01.T01:intron 30.0%
TTGGTTCATTTCAATGTTGT+GGG - Chr1:58138281-58138300 MsG0180003190.01.T01:CDS 30.0%
TTTCATACAATGTTAGTGGA+AGG - Chr1:58136104-58136123 MsG0180003190.01.T01:intron 30.0%
! ATTGGTTCATTTCAATGTTG+TGG - Chr1:58138280-58138299 MsG0180003190.01.T01:CDS 30.0%
! ATTTATGTACAATGTTGGCT+TGG - Chr1:58135858-58135877 MsG0180003190.01.T01:intron 30.0%
! CATCAGAAAGAAGTTACTTT+CGG - Chr1:58137391-58137410 MsG0180003190.01.T01:intron 30.0%
! CTTTTCTCAAATGTCATATC+AGG + Chr1:58135056-58135075 None:intergenic 30.0%
! GGTCTGTAGTTTGAAATAAA+AGG + Chr1:58136194-58136213 None:intergenic 30.0%
! GTGTCTTTTGTTAGTTAACA+TGG + Chr1:58135428-58135447 None:intergenic 30.0%
! TGGTTTAGCTATTGTTTTCT+TGG - Chr1:58138126-58138145 MsG0180003190.01.T01:intron 30.0%
!! AATTTTGGAAGAAAGGATGA+AGG - Chr1:58137057-58137076 MsG0180003190.01.T01:CDS 30.0%
!! GAAGTATCAGTTACACTTTT+AGG + Chr1:58136833-58136852 None:intergenic 30.0%
!! GCGAGTTGATATCAATAATA+CGG + Chr1:58136215-58136234 None:intergenic 30.0%
!! TAGATTCAAAAGCATTTCCA+AGG + Chr1:58136511-58136530 None:intergenic 30.0%
!! TGTTCTGAATTTTGGAAGAA+AGG - Chr1:58137050-58137069 MsG0180003190.01.T01:CDS 30.0%
!! TTTCAGGTTTATGTATCTCA+TGG - Chr1:58136261-58136280 MsG0180003190.01.T01:intron 30.0%
!!! AGTGATAATTTTAGTTACGC+TGG + Chr1:58136988-58137007 None:intergenic 30.0%
!!! TTGGTTTTGTGCAGAATATA+AGG - Chr1:58135567-58135586 MsG0180003190.01.T01:intron 30.0%
AAAGTAGGAATTGTAGACTG+AGG + Chr1:58136893-58136912 None:intergenic 35.0%
AACATTTGTAAGATCAGGTG+AGG + Chr1:58135153-58135172 None:intergenic 35.0%
AACGAAAGATTGTGCAGTAT+AGG - Chr1:58135105-58135124 MsG0180003190.01.T01:intron 35.0%
ACATACAAAACAGATGGTTC+CGG + Chr1:58135798-58135817 None:intergenic 35.0%
ACGAAAGATTGTGCAGTATA+GGG - Chr1:58135106-58135125 MsG0180003190.01.T01:intron 35.0%
ACTTTCAACAAGTATTCAGC+AGG + Chr1:58139217-58139236 None:intergenic 35.0%
AGAAAATGACATGAAGGTGA+GGG + Chr1:58138718-58138737 None:intergenic 35.0%
ATGAAATGGACAAATGCTTC+TGG + Chr1:58138665-58138684 None:intergenic 35.0%
ATGGACCAAACTGAATCATA+TGG - Chr1:58135351-58135370 MsG0180003190.01.T01:intron 35.0%
ATTGTATGCTAGAATTCGCA+AGG - Chr1:58139118-58139137 MsG0180003190.01.T01:intron 35.0%
ATTTATGATAAGGCAGCGTA+GGG + Chr1:58138083-58138102 None:intergenic 35.0%
CTTTCAACAAGTATTCAGCA+GGG + Chr1:58139216-58139235 None:intergenic 35.0%
GAGTAGAAATATATGCTGAC+AGG + Chr1:58138825-58138844 None:intergenic 35.0%
GGGTTAATGAGTTTCAGTTA+AGG + Chr1:58138528-58138547 None:intergenic 35.0%
GTTTACAGAAGGTTCAGATT+GGG - Chr1:58136933-58136952 MsG0180003190.01.T01:intron 35.0%
TAATGACATGTCACCAACAA+TGG - Chr1:58139293-58139312 MsG0180003190.01.T01:CDS 35.0%
TAGAAAATGACATGAAGGTG+AGG + Chr1:58138719-58138738 None:intergenic 35.0%
TAGAAATATATGCTGACAGG+AGG + Chr1:58138822-58138841 None:intergenic 35.0%
TAGCGAATATGGATATAAGG+TGG - Chr1:58137640-58137659 MsG0180003190.01.T01:intron 35.0%
TCAGAATTAGAAGATGAAGG+TGG - Chr1:58135215-58135234 MsG0180003190.01.T01:intron 35.0%
TCCCTTTCATACAATGTTAG+TGG - Chr1:58136100-58136119 MsG0180003190.01.T01:intron 35.0%
TCTGTGCTTAATTTACTCTC+AGG - Chr1:58137251-58137270 MsG0180003190.01.T01:CDS 35.0%
TGAGAGATATGACAGATGAA+TGG + Chr1:58138308-58138327 None:intergenic 35.0%
TGGTTTCAGACTTTATCAGA+AGG - Chr1:58137714-58137733 MsG0180003190.01.T01:intron 35.0%
TGTTTACAGAAGGTTCAGAT+TGG - Chr1:58136932-58136951 MsG0180003190.01.T01:intron 35.0%
TTAGATGGTTTAGGCATGTA+TGG + Chr1:58138234-58138253 None:intergenic 35.0%
TTATACGAGCGTGATGAAAT+AGG + Chr1:58138967-58138986 None:intergenic 35.0%
TTGCGAATTCTAGCATACAA+TGG + Chr1:58139119-58139138 None:intergenic 35.0%
TTGTAGGACAATAGCGAATA+TGG - Chr1:58137629-58137648 MsG0180003190.01.T01:intron 35.0%
TTTACAGAAGGTTCAGATTG+GGG - Chr1:58136934-58136953 MsG0180003190.01.T01:intron 35.0%
TTTATTTCAAGGCAGCTCAT+TGG - Chr1:58137688-58137707 MsG0180003190.01.T01:intron 35.0%
! ATACTTGTTGAAAGTAAGCC+AGG - Chr1:58139222-58139241 MsG0180003190.01.T01:CDS 35.0%
!! AATGCTTCTGGAATAACTTG+TGG + Chr1:58138653-58138672 None:intergenic 35.0%
!! AGTTACTTTCGGTGAGTTTT+AGG - Chr1:58137402-58137421 MsG0180003190.01.T01:intron 35.0%
!! CTTCTAATTCTGATGATGGT+AGG + Chr1:58135208-58135227 None:intergenic 35.0%
!!! TTTTGGTGCTTAAATGTGTG+AGG - Chr1:58135257-58135276 MsG0180003190.01.T01:intron 35.0%
AAGAAAGGATGAAGGTTTCG+TGG - Chr1:58137065-58137084 MsG0180003190.01.T01:CDS 40.0%
AATGTTAGTGGAAGGCTTTG+TGG - Chr1:58136112-58136131 MsG0180003190.01.T01:intron 40.0%
AGAAAAAGATGCGTCTGAAG+AGG - Chr1:58139248-58139267 MsG0180003190.01.T01:CDS 40.0%
AGTACTGTTGCATCCATTGT+TGG + Chr1:58139309-58139328 None:intergenic 40.0%
ATCAAATCATCTACCTCCCA+AGG - Chr1:58137882-58137901 MsG0180003190.01.T01:intron 40.0%
ATGGTTAGAAGACACGTTTG+AGG - Chr1:58135370-58135389 MsG0180003190.01.T01:intron 40.0%
CATTTATGATAAGGCAGCGT+AGG + Chr1:58138084-58138103 None:intergenic 40.0%
CCAACTTTGAGTATTTCCTC+TGG - Chr1:58138927-58138946 MsG0180003190.01.T01:intron 40.0%
CCAGAGGAAATACTCAAAGT+TGG + Chr1:58138930-58138949 None:intergenic 40.0%
GAATTAGAAGATGAAGGTGG+TGG - Chr1:58135218-58135237 MsG0180003190.01.T01:intron 40.0%
GTACTTCAGATGATCATGGA+AGG - Chr1:58135646-58135665 MsG0180003190.01.T01:CDS 40.0%
GTCAGACTTAACTTACCTTC+AGG + Chr1:58138454-58138473 None:intergenic 40.0%
GTCATCGTTGAAACCAGAAA+GGG + Chr1:58137304-58137323 None:intergenic 40.0%
GTCCTTCACGATACATAACA+CGG + Chr1:58136070-58136089 None:intergenic 40.0%
TGGTTCCGGATCTAAACTTA+TGG + Chr1:58135784-58135803 None:intergenic 40.0%
TGTTATGTATCGTGAAGGAC+CGG - Chr1:58136070-58136089 MsG0180003190.01.T01:intron 40.0%
TTACTAGCAGAAGACAACTC+AGG + Chr1:58135328-58135347 None:intergenic 40.0%
TTCCAGCCAAGATTCCAAAT+CGG - Chr1:58138483-58138502 MsG0180003190.01.T01:intron 40.0%
TTCCGTGTTATGTATCGTGA+AGG - Chr1:58136065-58136084 MsG0180003190.01.T01:intron 40.0%
TTCTCCATCTTTGCACACTT+TGG + Chr1:58135083-58135102 None:intergenic 40.0%
TTTATCGCTAAGGTCCTCTT+CGG - Chr1:58136537-58136556 MsG0180003190.01.T01:intron 40.0%
! CACTTTTCAATCCGCTTTGA+AGG - Chr1:58137004-58137023 MsG0180003190.01.T01:CDS 40.0%
!! AGGAGTACTTCAGATGATCA+TGG - Chr1:58135642-58135661 MsG0180003190.01.T01:CDS 40.0%
!! CTTATTTTCGCAAGCTCTCA+AGG + Chr1:58136702-58136721 None:intergenic 40.0%
!! TGATTTTAACCCTCCAGCTA+GGG - Chr1:58138398-58138417 MsG0180003190.01.T01:intron 40.0%
!! TTGATTTTAACCCTCCAGCT+AGG - Chr1:58138397-58138416 MsG0180003190.01.T01:intron 40.0%
!!! CGCCATCCTGTTTTAACTAT+TGG + Chr1:58136040-58136059 None:intergenic 40.0%
!!! TTACACTTTTAGGGCCTACT+TGG + Chr1:58136823-58136842 None:intergenic 40.0%
AAGAATTCAGCAAGGCCTTG+GGG - Chr1:58139091-58139110 MsG0180003190.01.T01:intron 45.0%
AGAAGAATTCAGCAAGGCCT+TGG - Chr1:58139089-58139108 MsG0180003190.01.T01:intron 45.0%
AGATTGTGCAGTATAGGGAG+AGG - Chr1:58135111-58135130 MsG0180003190.01.T01:intron 45.0%
ATCAAGTAGTCAGGCTCATG+TGG + Chr1:58138549-58138568 None:intergenic 45.0%
ATCTTGGCTGGAACAATGCT+TGG + Chr1:58138476-58138495 None:intergenic 45.0%
CCATGATGCTCTTTGACTCA+GGG + Chr1:58137278-58137297 None:intergenic 45.0%
CGTCATCGTTGAAACCAGAA+AGG + Chr1:58137305-58137324 None:intergenic 45.0%
CTTACCTTCAGGATGAACTC+CGG + Chr1:58138443-58138462 None:intergenic 45.0%
CTTGTTGAAAGTAAGCCAGG+TGG - Chr1:58139225-58139244 MsG0180003190.01.T01:CDS 45.0%
GAAGAATTCAGCAAGGCCTT+GGG - Chr1:58139090-58139109 MsG0180003190.01.T01:intron 45.0%
GAGAGCTTGCGAAAATAAGC+TGG - Chr1:58136703-58136722 MsG0180003190.01.T01:intron 45.0%
GCATCAGAGGTTGCAAATAG+TGG - Chr1:58139164-58139183 MsG0180003190.01.T01:intron 45.0%
GCTTCCAAAGTGTGCAAAGA+TGG - Chr1:58135076-58135095 MsG0180003190.01.T01:intron 45.0%
GGGGACAAATATCACTAGTG+AGG - Chr1:58136953-58136972 MsG0180003190.01.T01:intron 45.0%
TAGCATACAATGGATCCCCA+AGG + Chr1:58139109-58139128 None:intergenic 45.0%
TCAAGTAGTCAGGCTCATGT+GGG + Chr1:58138548-58138567 None:intergenic 45.0%
TGACGCAATTCCTGAAGTGA+AGG - Chr1:58137320-58137339 MsG0180003190.01.T01:CDS 45.0%
TGTAAGATCAGGTGAGGCAA+GGG + Chr1:58135147-58135166 None:intergenic 45.0%
TTGTAAGATCAGGTGAGGCA+AGG + Chr1:58135148-58135167 None:intergenic 45.0%
! GGATGTCGTGAGAGTTGATT+TGG - Chr1:58137341-58137360 MsG0180003190.01.T01:intron 45.0%
! TTAGTGGAAGGCTTTGTGGA+CGG - Chr1:58136116-58136135 MsG0180003190.01.T01:intron 45.0%
! TTTTCGCAAGCTCTCAAGGA+TGG + Chr1:58136698-58136717 None:intergenic 45.0%
!! ATCCGATTTGGAATCTTGGC+TGG + Chr1:58138488-58138507 None:intergenic 45.0%
!! CAGCATCCGATTTGGAATCT+TGG + Chr1:58138492-58138511 None:intergenic 45.0%
!! CCTGAGTCAAAGAGCATCAT+GGG - Chr1:58137276-58137295 MsG0180003190.01.T01:CDS 45.0%
!! CTGAGTCAAAGAGCATCATG+GGG - Chr1:58137277-58137296 MsG0180003190.01.T01:CDS 45.0%
!! GATTTTAACCCTCCAGCTAG+GGG - Chr1:58138399-58138418 MsG0180003190.01.T01:intron 45.0%
!! GTCGTGAGAGTTGATTTGGT+GGG - Chr1:58137345-58137364 MsG0180003190.01.T01:intron 45.0%
!! TGTCGTGAGAGTTGATTTGG+TGG - Chr1:58137344-58137363 MsG0180003190.01.T01:intron 45.0%
!! TTTCATTAAAATAATTAAAA+TGG + Chr1:58138847-58138866 None:intergenic 5.0%
!!! TATTTTTTATTATAAATTTC+TGG - Chr1:58137775-58137794 MsG0180003190.01.T01:intron 5.0%
ACAGCTTCCCTTGAAGACAG+AGG + Chr1:58137091-58137110 None:intergenic 50.0%
ATGTATCGTGAAGGACCGGA+GGG - Chr1:58136074-58136093 MsG0180003190.01.T01:intron 50.0%
CAATCCGGAGTTCATCCTGA+AGG - Chr1:58138436-58138455 MsG0180003190.01.T01:intron 50.0%
CACGACTACTAGTGCATCAG+AGG - Chr1:58139151-58139170 MsG0180003190.01.T01:intron 50.0%
CAGATCGACAGCATCCGATT+TGG + Chr1:58138500-58138519 None:intergenic 50.0%
CCCATGATGCTCTTTGACTC+AGG + Chr1:58137279-58137298 None:intergenic 50.0%
CTCACGACATCCTTCACTTC+AGG + Chr1:58137333-58137352 None:intergenic 50.0%
GGCTTAGTTCACAAAGCCAG+AGG + Chr1:58138946-58138965 None:intergenic 50.0%
GTATGAAAGGGAGTTCCCTC+CGG + Chr1:58136092-58136111 None:intergenic 50.0%
TATGTATCGTGAAGGACCGG+AGG - Chr1:58136073-58136092 MsG0180003190.01.T01:intron 50.0%
TCAAGGCAGCTCATTGGCAA+TGG - Chr1:58137694-58137713 MsG0180003190.01.T01:intron 50.0%
TTCGTGGCCTCTGTCTTCAA+GGG - Chr1:58137081-58137100 MsG0180003190.01.T01:CDS 50.0%
TTTCGTGGCCTCTGTCTTCA+AGG - Chr1:58137080-58137099 MsG0180003190.01.T01:CDS 50.0%
! GACGCATCTTTTTCTCCACC+TGG + Chr1:58139243-58139262 None:intergenic 50.0%
!! CCCTGAGTCAAAGAGCATCA+TGG - Chr1:58137275-58137294 MsG0180003190.01.T01:CDS 50.0%
!! GTGAGAGTTGATTTGGTGGG+AGG - Chr1:58137348-58137367 MsG0180003190.01.T01:intron 50.0%
AACCCTCCAGCTAGGGGAAA+AGG - Chr1:58138405-58138424 MsG0180003190.01.T01:intron 55.0%
ACCCTCCAGCTAGGGGAAAA+GGG - Chr1:58138406-58138425 MsG0180003190.01.T01:intron 55.0%
AGCATCATGGGGACCCTTTC+TGG - Chr1:58137288-58137307 MsG0180003190.01.T01:CDS 55.0%
AGGATGAACTCCGGATTGCC+TGG + Chr1:58138434-58138453 None:intergenic 55.0%
GATGAACTCCGGATTGCCTG+GGG + Chr1:58138432-58138451 None:intergenic 55.0%
GGATGAACTCCGGATTGCCT+GGG + Chr1:58138433-58138452 None:intergenic 55.0%
GGGAGGCTTTGCTTTGCAGA+AGG - Chr1:58137365-58137384 MsG0180003190.01.T01:intron 55.0%
GAAAAGGGCCCCAGGCAATC+CGG - Chr1:58138421-58138440 MsG0180003190.01.T01:intron 60.0%
! GCCCTTTTCCCCTAGCTGGA+GGG + Chr1:58138410-58138429 None:intergenic 60.0%
AGCTAGGGGAAAAGGGCCCC+AGG - Chr1:58138413-58138432 MsG0180003190.01.T01:intron 65.0%
! GGCCCTTTTCCCCTAGCTGG+AGG + Chr1:58138411-58138430 None:intergenic 65.0%
! TGGGGCCCTTTTCCCCTAGC+TGG + Chr1:58138414-58138433 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 58135050 58139361 58135050 ID=MsG0180003190.01;Name=MsG0180003190.01
Chr1 mRNA 58135050 58139361 58135050 ID=MsG0180003190.01.T01;Parent=MsG0180003190.01;Name=MsG0180003190.01.T01;_AED=0.40;_eAED=0.45;_QI=0|0.46|0.5|0.93|0.86|0.81|16|0|300
Chr1 exon 58135050 58135051 58135050 ID=MsG0180003190.01.T01:exon:3655;Parent=MsG0180003190.01.T01
Chr1 exon 58135641 58135780 58135641 ID=MsG0180003190.01.T01:exon:3654;Parent=MsG0180003190.01.T01
Chr1 exon 58136999 58137138 58136999 ID=MsG0180003190.01.T01:exon:3653;Parent=MsG0180003190.01.T01
Chr1 exon 58137240 58137343 58137240 ID=MsG0180003190.01.T01:exon:3652;Parent=MsG0180003190.01.T01
Chr1 exon 58137442 58137525 58137442 ID=MsG0180003190.01.T01:exon:3651;Parent=MsG0180003190.01.T01
Chr1 exon 58138259 58138358 58138259 ID=MsG0180003190.01.T01:exon:3650;Parent=MsG0180003190.01.T01
Chr1 exon 58138688 58138830 58138688 ID=MsG0180003190.01.T01:exon:3649;Parent=MsG0180003190.01.T01
Chr1 exon 58139172 58139361 58139172 ID=MsG0180003190.01.T01:exon:3648;Parent=MsG0180003190.01.T01
Chr1 CDS 58139172 58139361 58139172 ID=MsG0180003190.01.T01:cds;Parent=MsG0180003190.01.T01
Chr1 CDS 58138688 58138830 58138688 ID=MsG0180003190.01.T01:cds;Parent=MsG0180003190.01.T01
Chr1 CDS 58138259 58138358 58138259 ID=MsG0180003190.01.T01:cds;Parent=MsG0180003190.01.T01
Chr1 CDS 58137442 58137525 58137442 ID=MsG0180003190.01.T01:cds;Parent=MsG0180003190.01.T01
Chr1 CDS 58137240 58137343 58137240 ID=MsG0180003190.01.T01:cds;Parent=MsG0180003190.01.T01
Chr1 CDS 58136999 58137138 58136999 ID=MsG0180003190.01.T01:cds;Parent=MsG0180003190.01.T01
Chr1 CDS 58135641 58135780 58135641 ID=MsG0180003190.01.T01:cds;Parent=MsG0180003190.01.T01
Chr1 CDS 58135050 58135051 58135050 ID=MsG0180003190.01.T01:cds;Parent=MsG0180003190.01.T01
Gene Sequence

>MsG0180003190.01.T01

ATGCCTGATATGACATTTGAGAAAAGGCTTCCAAAGTGTGCAAAGATGGAGAAGAAACGAAAGATTGTGCAGTATAGGGAGAGGCTAGATAAGACCCTTGCCTCACCTGATCTTACAAATGTTGAGATACTCAAAAAGCTTGTCAAAAGTCAACTCCTACCATCATCAGAATTAGAAGATGAAGGTGGTGAATATAAGGAGAAATTCGTAGAACATAAAACTGCGGAAATATCTAACTTTCTTGATATGTTAGGAGTACTTCAGATGATCATGGAAGGTCTAATACATCACAAAATGATTGGAAAGTATGTTATTCACTCTCTGGCTTCTGCAGATGGCGAAGAGTTCCGTGTTATGTATCGTGAAGGACCGGAGGGAACTCCCTTTCATACAATGTTAGTGGAAGGCTTTGTGGACGGACCTGTTGATGTTTGTGGCCTCAGTCTACAATTCCTACTTTCAAAATCTTATCATGTGAATGTTTACAGAAGGTTCAGATTGGGGACAAATATCACTAAAAGGATGAAGGTTTCGTGGCCTCTGTCTTCAAGGGAAGCTGTTGTGCACTATTATCTGTTTGAGTACTTTCAAGACGACTTAATTGTTGTTCTTACGAATTCGGTCCCTGAGTCAAAGAGCATCATGGGGACCCTTTCTGGTTTCAACGATGACGCAATTCCTGAAGTGAAGGATGTCGTGAGAGTTGATTTGGTGGGAGGCTTTGCTTTGCAGAAGGTGACATCAGAAAGAAGTTACTTTCGATTGAATGGTAAATTTCAACCACAAGTTATTCCAGAAGCATTTGTCCATTTCATCCACTCTATTGAATCTTGTGATTTACATCTCCCTCACCTTCATGTCATTTTCTATATTTACCTAAGATACTTAAACAATGAGACTTAA

Protein sequence

>MsG0180003190.01.T01

MPDMTFEKRLPKCAKMEKKRKIVQYRERLDKTLASPDLTNVEILKKLVKSQLLPSSELEDEGGEYKEKFVEHKTAEISNFLDMLGVLQMIMEGLIHHKMIGKYVIHSLASADGEEFRVMYREGPEGTPFHTMLVEGFVDGPVDVCGLSLQFLLSKSYHVNVYRRFRLGTNITKRMKVSWPLSSREAVVHYYLFEYFQDDLIVVLTNSVPESKSIMGTLSGFNDDAIPEVKDVVRVDLVGGFALQKVTSERSYFRLNGKFQPQVIPEAFVHFIHSIESCDLHLPHLHVIFYIYLRYLNNET*