Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016449.01.T01 | XP_013461366.1 | 96.032 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 3.05E-84 | 252 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016449.01.T01 | Q8LG89 | 54.264 | 129 | 56 | 1 | 1 | 126 | 1 | 129 | 1.79E-46 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048781.01 | MsG0380016449.01 | 0.809495 | 1.839573e-50 | 1.081693e-47 |
| MsG0180000111.01 | MsG0380016449.01 | 0.815729 | 7.962287e-52 | 5.534027e-49 |
| MsG0180002421.01 | MsG0380016449.01 | 0.821565 | 3.772943e-53 | 3.080537e-50 |
| MsG0180002984.01 | MsG0380016449.01 | 0.833109 | 6.441037e-56 | 7.345651e-53 |
| MsG0180004126.01 | MsG0380016449.01 | 0.805011 | 1.639667e-49 | 8.580154e-47 |
| MsG0180004510.01 | MsG0380016449.01 | 0.808039 | 3.767176e-50 | 2.131392e-47 |
| MsG0180005553.01 | MsG0380016449.01 | 0.815855 | 7.465126e-52 | 5.205687e-49 |
| MsG0180006026.01 | MsG0380016449.01 | 0.838344 | 3.040690e-57 | 4.060829e-54 |
| MsG0180006182.01 | MsG0380016449.01 | 0.816873 | 4.419026e-52 | 3.168898e-49 |
| MsG0380013041.01 | MsG0380016449.01 | 0.869819 | 2.327164e-66 | 8.852525e-63 |
| MsG0380014130.01 | MsG0380016449.01 | 0.805515 | 1.286373e-49 | 6.818743e-47 |
| MsG0380015409.01 | MsG0380016449.01 | 0.906006 | 2.351860e-80 | 3.906231e-76 |
| MsG0380015548.01 | MsG0380016449.01 | 0.844507 | 7.241710e-59 | 1.171679e-55 |
| MsG0380016112.01 | MsG0380016449.01 | 0.823361 | 1.443503e-53 | 1.240107e-50 |
| MsG0380016449.01 | MsG0380017240.01 | 0.815400 | 9.425597e-52 | 6.491692e-49 |
| MsG0380016449.01 | MsG0380017989.01 | 0.835866 | 1.307727e-56 | 1.619767e-53 |
| MsG0380016449.01 | MsG0480019635.01 | 0.802668 | 5.028929e-49 | 2.477874e-46 |
| MsG0380016449.01 | MsG0480022167.01 | 0.824267 | 8.855902e-54 | 7.805412e-51 |
| MsG0380016449.01 | MsG0480022331.01 | 0.801899 | 7.242866e-49 | 3.499603e-46 |
| MsG0380016449.01 | MsG0480023324.01 | 0.821459 | 3.991907e-53 | 3.249501e-50 |
| MsG0380016449.01 | MsG0580024109.01 | 0.821086 | 4.866797e-53 | 3.921111e-50 |
| MsG0380016449.01 | MsG0580024954.01 | 0.823079 | 1.679747e-53 | 1.431853e-50 |
| MsG0380016449.01 | MsG0580025153.01 | -0.824248 | 8.946895e-54 | 7.881422e-51 |
| MsG0380016449.01 | MsG0580025385.01 | 0.830745 | 2.470120e-55 | 2.626065e-52 |
| MsG0380016449.01 | MsG0580025822.01 | 0.818975 | 1.480195e-52 | 1.124704e-49 |
| MsG0380016449.01 | MsG0580028330.01 | 0.859014 | 5.542809e-63 | 1.442637e-59 |
| MsG0380016449.01 | MsG0580029298.01 | 0.834856 | 2.352521e-56 | 2.826942e-53 |
| MsG0380016449.01 | MsG0580029591.01 | 0.807764 | 4.309677e-50 | 2.420859e-47 |
| MsG0380016449.01 | MsG0780038373.01 | 0.813562 | 2.404398e-51 | 1.575419e-48 |
| MsG0380016449.01 | MsG0780038810.01 | 0.808268 | 3.366322e-50 | 1.916335e-47 |
| MsG0380016449.01 | MsG0780040364.01 | 0.842099 | 3.179009e-58 | 4.769085e-55 |
| MsG0380016449.01 | MsG0780040564.01 | 0.810866 | 9.314420e-51 | 5.679321e-48 |
| MsG0380016449.01 | MsG0780041063.01 | 0.814540 | 1.462501e-51 | 9.840535e-49 |
| MsG0380016449.01 | MsG0780041363.01 | 0.824280 | 8.790750e-54 | 7.750802e-51 |
| MsG0380016449.01 | MsG0880042366.01 | 0.824885 | 6.333896e-54 | 5.683508e-51 |
| MsG0380016449.01 | MsG0880043961.01 | 0.807239 | 5.568903e-50 | 3.085847e-47 |
| MsG0380016449.01 | MsG0880044984.01 | 0.844574 | 6.948280e-59 | 1.126619e-55 |
| MsG0380016449.01 | MsG0880045584.01 | 0.812184 | 4.816002e-51 | 3.041246e-48 |
| MsG0380016449.01 | MsG0880046991.01 | 0.828014 | 1.137680e-54 | 1.117001e-51 |
| MsG0280007419.01 | MsG0380016449.01 | 0.808628 | 2.820863e-50 | 1.620825e-47 |
| MsG0280007844.01 | MsG0380016449.01 | 0.818459 | 1.938346e-52 | 1.451925e-49 |
| MsG0280007983.01 | MsG0380016449.01 | 0.818181 | 2.241167e-52 | 1.665751e-49 |
| MsG0280008407.01 | MsG0380016449.01 | 0.815909 | 7.260318e-52 | 5.070330e-49 |
| MsG0280009241.01 | MsG0380016449.01 | 0.820633 | 6.187391e-53 | 4.921801e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016449.01.T01 | MTR_3g089035 | 96.032 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 3.70e-88 | 252 |
| MsG0380016449.01.T01 | MTR_3g089005 | 65.600 | 125 | 43 | 0 | 1 | 125 | 1 | 125 | 3.21e-60 | 181 |
| MsG0380016449.01.T01 | MTR_8g089110 | 61.905 | 126 | 41 | 2 | 1 | 125 | 1 | 120 | 9.51e-54 | 165 |
| MsG0380016449.01.T01 | MTR_2g043730 | 47.619 | 126 | 63 | 2 | 1 | 125 | 1 | 124 | 3.51e-39 | 128 |
| MsG0380016449.01.T01 | MTR_8g088830 | 55.882 | 102 | 44 | 1 | 25 | 125 | 20 | 121 | 5.04e-38 | 125 |
| MsG0380016449.01.T01 | MTR_2g043790 | 47.917 | 96 | 50 | 0 | 30 | 125 | 4 | 99 | 2.18e-29 | 102 |
| MsG0380016449.01.T01 | MTR_5g006040 | 36.752 | 117 | 65 | 3 | 14 | 123 | 7 | 121 | 2.32e-21 | 84.3 |
| MsG0380016449.01.T01 | MTR_8g007020 | 40.984 | 122 | 66 | 4 | 10 | 126 | 1 | 121 | 3.08e-21 | 84.3 |
| MsG0380016449.01.T01 | MTR_1g104800 | 36.842 | 114 | 62 | 4 | 18 | 123 | 9 | 120 | 1.13e-19 | 80.1 |
| MsG0380016449.01.T01 | MTR_8g007035 | 39.344 | 122 | 68 | 4 | 10 | 126 | 1 | 121 | 2.96e-19 | 79.3 |
| MsG0380016449.01.T01 | MTR_1g105130 | 35.780 | 109 | 66 | 3 | 19 | 123 | 11 | 119 | 8.54e-19 | 77.0 |
| MsG0380016449.01.T01 | MTR_1g105120 | 35.780 | 109 | 66 | 3 | 19 | 123 | 11 | 119 | 8.54e-19 | 77.0 |
| MsG0380016449.01.T01 | MTR_7g086160 | 34.167 | 120 | 75 | 3 | 8 | 123 | 2 | 121 | 1.80e-18 | 76.6 |
| MsG0380016449.01.T01 | MTR_7g086220 | 32.143 | 112 | 72 | 3 | 9 | 117 | 2 | 112 | 3.08e-18 | 75.9 |
| MsG0380016449.01.T01 | MTR_4g114870 | 39.394 | 99 | 53 | 2 | 32 | 123 | 190 | 288 | 6.16e-18 | 78.2 |
| MsG0380016449.01.T01 | MTR_4g114870 | 34.351 | 131 | 68 | 4 | 12 | 126 | 1 | 129 | 1.28e-15 | 72.0 |
| MsG0380016449.01.T01 | MTR_7g086140 | 34.167 | 120 | 74 | 4 | 8 | 123 | 2 | 120 | 1.34e-17 | 74.3 |
| MsG0380016449.01.T01 | MTR_7g086190 | 34.167 | 120 | 74 | 4 | 8 | 123 | 2 | 120 | 1.34e-17 | 74.3 |
| MsG0380016449.01.T01 | MTR_1g112700 | 36.134 | 119 | 70 | 4 | 11 | 123 | 9 | 127 | 2.07e-17 | 74.3 |
| MsG0380016449.01.T01 | MTR_3g099580 | 38.393 | 112 | 65 | 3 | 15 | 123 | 8 | 118 | 2.93e-17 | 73.9 |
| MsG0380016449.01.T01 | MTR_0334s0010 | 35.000 | 120 | 69 | 4 | 10 | 123 | 7 | 123 | 7.42e-17 | 73.2 |
| MsG0380016449.01.T01 | MTR_3g099980 | 40.000 | 115 | 61 | 4 | 17 | 123 | 6 | 120 | 1.85e-16 | 72.4 |
| MsG0380016449.01.T01 | MTR_7g086100 | 34.821 | 112 | 69 | 3 | 15 | 123 | 9 | 119 | 2.34e-16 | 72.4 |
| MsG0380016449.01.T01 | MTR_7g086280 | 34.454 | 119 | 73 | 3 | 10 | 123 | 1 | 119 | 2.69e-16 | 71.2 |
| MsG0380016449.01.T01 | MTR_2g088990 | 39.048 | 105 | 59 | 4 | 23 | 123 | 15 | 118 | 3.26e-16 | 72.0 |
| MsG0380016449.01.T01 | MTR_7g086230 | 35.965 | 114 | 66 | 3 | 17 | 123 | 6 | 119 | 3.40e-16 | 70.9 |
| MsG0380016449.01.T01 | MTR_6g083240 | 33.613 | 119 | 70 | 2 | 15 | 124 | 9 | 127 | 3.55e-16 | 70.9 |
| MsG0380016449.01.T01 | MTR_6g023760 | 40.816 | 98 | 53 | 4 | 30 | 123 | 23 | 119 | 4.65e-16 | 70.9 |
| MsG0380016449.01.T01 | MTR_3g099680 | 39.130 | 115 | 62 | 4 | 17 | 123 | 6 | 120 | 2.02e-15 | 69.7 |
| MsG0380016449.01.T01 | MTR_3g099570 | 39.474 | 114 | 61 | 4 | 17 | 123 | 6 | 118 | 6.99e-15 | 67.8 |
| MsG0380016449.01.T01 | MTR_4g067200 | 29.752 | 121 | 72 | 3 | 16 | 123 | 7 | 127 | 1.44e-14 | 66.6 |
| MsG0380016449.01.T01 | MTR_4g066110 | 29.752 | 121 | 72 | 3 | 16 | 123 | 7 | 127 | 1.44e-14 | 66.6 |
| MsG0380016449.01.T01 | MTR_6g080660 | 31.250 | 112 | 71 | 4 | 15 | 123 | 12 | 120 | 5.09e-14 | 65.9 |
| MsG0380016449.01.T01 | MTR_7g086090 | 34.454 | 119 | 73 | 3 | 10 | 123 | 1 | 119 | 5.37e-14 | 66.2 |
| MsG0380016449.01.T01 | MTR_6g013200 | 31.707 | 123 | 80 | 2 | 7 | 125 | 9 | 131 | 9.24e-14 | 64.7 |
| MsG0380016449.01.T01 | MTR_6g013420 | 30.827 | 133 | 82 | 3 | 3 | 125 | 2 | 134 | 2.00e-13 | 63.9 |
| MsG0380016449.01.T01 | MTR_4g007250 | 32.653 | 98 | 64 | 1 | 30 | 125 | 26 | 123 | 5.60e-13 | 62.4 |
| MsG0380016449.01.T01 | MTR_4g081100 | 28.800 | 125 | 82 | 2 | 9 | 126 | 8 | 132 | 1.09e-12 | 62.4 |
| MsG0380016449.01.T01 | MTR_1g090420 | 34.483 | 116 | 67 | 4 | 15 | 123 | 11 | 124 | 7.48e-12 | 60.1 |
| MsG0380016449.01.T01 | MTR_2g079030 | 30.000 | 120 | 78 | 3 | 10 | 123 | 1 | 120 | 8.63e-12 | 61.2 |
| MsG0380016449.01.T01 | MTR_8g099220 | 30.000 | 110 | 70 | 3 | 20 | 123 | 17 | 125 | 1.58e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016449.01.T01 | AT2G02850 | 54.264 | 129 | 56 | 1 | 1 | 126 | 1 | 129 | 1.83e-47 | 149 |
| MsG0380016449.01.T01 | AT1G17800 | 40.945 | 127 | 67 | 4 | 7 | 126 | 12 | 137 | 2.91e-27 | 98.6 |
| MsG0380016449.01.T01 | AT2G32300 | 37.705 | 122 | 72 | 3 | 8 | 126 | 2 | 122 | 4.57e-23 | 90.9 |
| MsG0380016449.01.T01 | AT2G32300 | 37.705 | 122 | 72 | 3 | 8 | 126 | 32 | 152 | 7.72e-23 | 90.9 |
| MsG0380016449.01.T01 | AT5G26330 | 33.607 | 122 | 76 | 2 | 10 | 126 | 1 | 122 | 9.61e-22 | 85.5 |
| MsG0380016449.01.T01 | AT3G17675 | 35.246 | 122 | 76 | 2 | 5 | 123 | 4 | 125 | 2.36e-21 | 83.2 |
| MsG0380016449.01.T01 | AT5G07475 | 38.739 | 111 | 61 | 4 | 19 | 123 | 13 | 122 | 2.63e-20 | 82.0 |
| MsG0380016449.01.T01 | AT3G60280 | 41.237 | 97 | 53 | 3 | 30 | 123 | 21 | 116 | 1.76e-19 | 80.5 |
| MsG0380016449.01.T01 | AT3G27200 | 36.364 | 121 | 72 | 4 | 10 | 126 | 3 | 122 | 2.26e-19 | 79.3 |
| MsG0380016449.01.T01 | AT2G44790 | 40.741 | 108 | 54 | 5 | 24 | 126 | 23 | 125 | 1.42e-17 | 75.1 |
| MsG0380016449.01.T01 | AT3G60270 | 37.113 | 97 | 57 | 3 | 30 | 123 | 23 | 118 | 5.05e-17 | 73.6 |
| MsG0380016449.01.T01 | AT2G25060 | 33.613 | 119 | 71 | 3 | 16 | 126 | 14 | 132 | 2.16e-16 | 71.6 |
| MsG0380016449.01.T01 | AT4G31840 | 29.921 | 127 | 81 | 3 | 8 | 126 | 2 | 128 | 7.02e-16 | 70.1 |
| MsG0380016449.01.T01 | AT2G31050 | 33.043 | 115 | 72 | 3 | 17 | 126 | 12 | 126 | 3.93e-15 | 68.6 |
| MsG0380016449.01.T01 | AT2G26720 | 28.319 | 113 | 77 | 2 | 18 | 126 | 14 | 126 | 1.10e-14 | 67.8 |
| MsG0380016449.01.T01 | AT1G72230 | 36.207 | 116 | 68 | 4 | 11 | 123 | 3 | 115 | 1.65e-14 | 66.6 |
| MsG0380016449.01.T01 | AT3G20570 | 30.952 | 126 | 80 | 3 | 4 | 123 | 2 | 126 | 4.13e-13 | 63.5 |
| MsG0380016449.01.T01 | AT5G20230 | 34.000 | 100 | 60 | 2 | 33 | 126 | 25 | 124 | 8.51e-13 | 62.4 |
| MsG0380016449.01.T01 | AT4G30590 | 29.365 | 126 | 78 | 3 | 12 | 126 | 4 | 129 | 1.49e-12 | 61.6 |
| MsG0380016449.01.T01 | AT1G22480 | 37.931 | 116 | 63 | 5 | 12 | 123 | 1 | 111 | 1.64e-12 | 61.2 |
| MsG0380016449.01.T01 | AT2G27035 | 32.500 | 120 | 60 | 6 | 16 | 123 | 12 | 122 | 1.26e-11 | 58.9 |
| MsG0380016449.01.T01 | AT5G15350 | 29.661 | 118 | 75 | 3 | 14 | 123 | 6 | 123 | 2.41e-11 | 58.2 |
| MsG0380016449.01.T01 | AT3G18590 | 28.926 | 121 | 73 | 6 | 13 | 123 | 7 | 124 | 3.54e-11 | 58.2 |
Find 33 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCCTGGTCACTGCCAATC+TGG | 0.329505 | 3:-83655383 | MsG0380016449.01.T01:CDS |
| GTCCTCTTGATAGCCTGATT+TGG | 0.349417 | 3:+83655426 | None:intergenic |
| AAAACTGATACTTGGCCTAA+TGG | 0.367231 | 3:-83655754 | MsG0380016449.01.T01:CDS |
| GGTGCTAAAGTGTTCAGTTC+AGG | 0.375248 | 3:-83655455 | MsG0380016449.01.T01:CDS |
| AGAGGACTAAACTGCATAGA+TGG | 0.414690 | 3:+83655349 | None:intergenic |
| TCTTACACCGTTGGAGGACC+TGG | 0.442628 | 3:-83655790 | MsG0380016449.01.T01:CDS |
| GTTCAGGGAATGACCAAATC+AGG | 0.451771 | 3:-83655439 | MsG0380016449.01.T01:CDS |
| CACTTTCAGCCAGAAACAAA+AGG | 0.476546 | 3:+83655824 | None:intergenic |
| TACTTCATATGCAGCTATCC+TGG | 0.480047 | 3:-83655398 | MsG0380016449.01.T01:CDS |
| GAGAATATGACTGAGGGAAG+AGG | 0.490305 | 3:-83655889 | None:intergenic |
| ATCCTGGTCACTGCCAATCT+GGG | 0.503016 | 3:-83655382 | MsG0380016449.01.T01:CDS |
| GTGCTAAAGTGTTCAGTTCA+GGG | 0.512300 | 3:-83655454 | MsG0380016449.01.T01:CDS |
| ATCCCAGATTGGCAGTGACC+AGG | 0.530524 | 3:+83655380 | None:intergenic |
| GGACATACAAAACTGATACT+TGG | 0.540585 | 3:-83655762 | MsG0380016449.01.T01:CDS |
| TGGAAACCTTCATCCCAGAT+TGG | 0.543764 | 3:+83655369 | None:intergenic |
| TCACTGCCAATCTGGGATGA+AGG | 0.545313 | 3:-83655375 | MsG0380016449.01.T01:CDS |
| GCAGCATCTTACACCGTTGG+AGG | 0.574303 | 3:-83655796 | MsG0380016449.01.T01:CDS |
| GTGGTTGCCGTGGACAAAAG+TGG | 0.576000 | 3:-83655503 | MsG0380016449.01.T01:CDS |
| CTGAACACTTTAGCACCTCC+CGG | 0.578857 | 3:+83655461 | None:intergenic |
| AATGCAGCATCTTACACCGT+TGG | 0.578987 | 3:-83655799 | MsG0380016449.01.T01:CDS |
| CACACACAATGTGGTTGCCG+TGG | 0.585202 | 3:-83655513 | MsG0380016449.01.T01:CDS |
| AATAGTGAGAATATGACTGA+GGG | 0.586297 | 3:-83655895 | None:intergenic |
| CTTACACCGTTGGAGGACCT+GGG | 0.588429 | 3:-83655789 | MsG0380016449.01.T01:CDS |
| AAATAGTGAGAATATGACTG+AGG | 0.592419 | 3:-83655896 | None:intergenic |
| TACAACAACTGTAAGACACC+GGG | 0.625426 | 3:-83655479 | MsG0380016449.01.T01:CDS |
| TTACACCGTTGGAGGACCTG+GGG | 0.632787 | 3:-83655788 | MsG0380016449.01.T01:CDS |
| CACGGCAACCACATTGTGTG+TGG | 0.635175 | 3:+83655514 | None:intergenic |
| GACCAAATCAGGCTATCAAG+AGG | 0.635565 | 3:-83655428 | MsG0380016449.01.T01:CDS |
| AGGCAGTGCATCTATGAACA+TGG | 0.647845 | 3:-83655869 | MsG0380016449.01.T01:CDS |
| TGATTCAACCACACACAATG+TGG | 0.661122 | 3:-83655522 | MsG0380016449.01.T01:CDS |
| ATACAACAACTGTAAGACAC+CGG | 0.661265 | 3:-83655480 | MsG0380016449.01.T01:CDS |
| TACACCGTTGGAGGACCTGG+GGG | 0.694377 | 3:-83655787 | MsG0380016449.01.T01:CDS |
| AACAACTGTAAGACACCGGG+AGG | 0.711932 | 3:-83655476 | MsG0380016449.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTGAGAAATATTGTTT+TGG | + | Chr3:83655616-83655635 | None:intergenic | 15.0% |
| !!! | TCAATTTTACAAAATTGTTT+TGG | - | Chr3:83655628-83655647 | MsG0380016449.01.T01:intron | 15.0% |
| !! | AATTTAATTACCGTACAATT+GGG | - | Chr3:83655577-83655596 | MsG0380016449.01.T01:intron | 20.0% |
| !! | ACTTTAATTATATGTGCATA+TGG | - | Chr3:83655667-83655686 | MsG0380016449.01.T01:intron | 20.0% |
| !! | TAATTTAATTACCGTACAAT+TGG | - | Chr3:83655576-83655595 | MsG0380016449.01.T01:intron | 20.0% |
| !! | AATGGAAAAAAGTTTAAAGC+TGG | - | Chr3:83655502-83655521 | MsG0380016449.01.T01:CDS | 25.0% |
| !!! | GCTTTAAACTTTTTTCCATT+AGG | + | Chr3:83655502-83655521 | None:intergenic | 25.0% |
| ATATGGTAATTGATTGTTGC+AGG | - | Chr3:83655684-83655703 | MsG0380016449.01.T01:intron | 30.0% | |
| CATCAAATATCCCAATTGTA+CGG | + | Chr3:83655590-83655609 | None:intergenic | 30.0% | |
| AAAACTGATACTTGGCCTAA+TGG | - | Chr3:83655484-83655503 | MsG0380016449.01.T01:CDS | 35.0% | |
| ATACAACAACTGTAAGACAC+CGG | - | Chr3:83655758-83655777 | MsG0380016449.01.T01:CDS | 35.0% | |
| GGACATACAAAACTGATACT+TGG | - | Chr3:83655476-83655495 | MsG0380016449.01.T01:CDS | 35.0% | |
| CACTTTCAGCCAGAAACAAA+AGG | + | Chr3:83655417-83655436 | None:intergenic | 40.0% | |
| TACAACAACTGTAAGACACC+GGG | - | Chr3:83655759-83655778 | MsG0380016449.01.T01:CDS | 40.0% | |
| TACTTCATATGCAGCTATCC+TGG | - | Chr3:83655840-83655859 | MsG0380016449.01.T01:CDS | 40.0% | |
| TGATTCAACCACACACAATG+TGG | - | Chr3:83655716-83655735 | MsG0380016449.01.T01:intron | 40.0% | |
| ! | GTGCTAAAGTGTTCAGTTCA+GGG | - | Chr3:83655784-83655803 | MsG0380016449.01.T01:CDS | 40.0% |
| !! | GTTGTATCCACTTTTGTCCA+CGG | + | Chr3:83655745-83655764 | None:intergenic | 40.0% |
| AATGCAGCATCTTACACCGT+TGG | - | Chr3:83655439-83655458 | MsG0380016449.01.T01:CDS | 45.0% | |
| AGGCAGTGCATCTATGAACA+TGG | - | Chr3:83655369-83655388 | MsG0380016449.01.T01:CDS | 45.0% | |
| GACCAAATCAGGCTATCAAG+AGG | - | Chr3:83655810-83655829 | MsG0380016449.01.T01:CDS | 45.0% | |
| GTTCAGGGAATGACCAAATC+AGG | - | Chr3:83655799-83655818 | MsG0380016449.01.T01:CDS | 45.0% | |
| TGGAAACCTTCATCCCAGAT+TGG | + | Chr3:83655872-83655891 | None:intergenic | 45.0% | |
| ! | GGTGCTAAAGTGTTCAGTTC+AGG | - | Chr3:83655783-83655802 | MsG0380016449.01.T01:CDS | 45.0% |
| ! | GTCCTCTTGATAGCCTGATT+TGG | + | Chr3:83655815-83655834 | None:intergenic | 45.0% |
| !! | ACTGCTGTGCCTTTTGTTTC+TGG | - | Chr3:83655405-83655424 | MsG0380016449.01.T01:CDS | 45.0% |
| AACAACTGTAAGACACCGGG+AGG | - | Chr3:83655762-83655781 | MsG0380016449.01.T01:CDS | 50.0% | |
| ATCCTGGTCACTGCCAATCT+GGG | - | Chr3:83655856-83655875 | MsG0380016449.01.T01:CDS | 50.0% | |
| CTGAACACTTTAGCACCTCC+CGG | + | Chr3:83655780-83655799 | None:intergenic | 50.0% | |
| TATCCTGGTCACTGCCAATC+TGG | - | Chr3:83655855-83655874 | MsG0380016449.01.T01:CDS | 50.0% | |
| ! | GTTTTGTATGTCCATCCCCC+AGG | + | Chr3:83655469-83655488 | None:intergenic | 50.0% |
| ! | TCACTGCCAATCTGGGATGA+AGG | - | Chr3:83655863-83655882 | MsG0380016449.01.T01:CDS | 50.0% |
| ATCCCAGATTGGCAGTGACC+AGG | + | Chr3:83655861-83655880 | None:intergenic | 55.0% | |
| CACACACAATGTGGTTGCCG+TGG | - | Chr3:83655725-83655744 | MsG0380016449.01.T01:CDS | 55.0% | |
| CACGGCAACCACATTGTGTG+TGG | + | Chr3:83655727-83655746 | None:intergenic | 55.0% | |
| CTTACACCGTTGGAGGACCT+GGG | - | Chr3:83655449-83655468 | MsG0380016449.01.T01:CDS | 55.0% | |
| GCAGCATCTTACACCGTTGG+AGG | - | Chr3:83655442-83655461 | MsG0380016449.01.T01:CDS | 55.0% | |
| GTGGTTGCCGTGGACAAAAG+TGG | - | Chr3:83655735-83655754 | MsG0380016449.01.T01:CDS | 55.0% | |
| TCTTACACCGTTGGAGGACC+TGG | - | Chr3:83655448-83655467 | MsG0380016449.01.T01:CDS | 55.0% | |
| TTACACCGTTGGAGGACCTG+GGG | - | Chr3:83655450-83655469 | MsG0380016449.01.T01:CDS | 55.0% | |
| TACACCGTTGGAGGACCTGG+GGG | - | Chr3:83655451-83655470 | MsG0380016449.01.T01:CDS | 60.0% | |
| CCATCCCCCAGGTCCTCCAA+CGG | + | Chr3:83655458-83655477 | None:intergenic | 65.0% | |
| CCGTTGGAGGACCTGGGGGA+TGG | - | Chr3:83655455-83655474 | MsG0380016449.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 83655355 | 83655905 | 83655355 | ID=MsG0380016449.01;Name=MsG0380016449.01 |
| Chr3 | mRNA | 83655355 | 83655905 | 83655355 | ID=MsG0380016449.01.T01;Parent=MsG0380016449.01;Name=MsG0380016449.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|126 |
| Chr3 | exon | 83655725 | 83655905 | 83655725 | ID=MsG0380016449.01.T01:exon:33328;Parent=MsG0380016449.01.T01 |
| Chr3 | exon | 83655355 | 83655554 | 83655355 | ID=MsG0380016449.01.T01:exon:33327;Parent=MsG0380016449.01.T01 |
| Chr3 | CDS | 83655725 | 83655905 | 83655725 | ID=MsG0380016449.01.T01:cds;Parent=MsG0380016449.01.T01 |
| Chr3 | CDS | 83655355 | 83655554 | 83655355 | ID=MsG0380016449.01.T01:cds;Parent=MsG0380016449.01.T01 |
| Gene Sequence |
| Protein sequence |
