Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046991.01.T01 | XP_012573466.1 | 86.331 | 139 | 19 | 0 | 1 | 139 | 1 | 139 | 1.22E-77 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046991.01.T01 | P93092 | 70.29 | 138 | 38 | 2 | 1 | 138 | 1 | 135 | 2.21E-60 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046991.01.T01 | A0A1S3EET3 | 86.331 | 139 | 19 | 0 | 1 | 139 | 1 | 139 | 5.81e-78 | 236 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048258.01 | MsG0880046991.01 | 0.845200 | 4.709745e-59 | 7.788843e-56 |
| MsG0080048781.01 | MsG0880046991.01 | 0.855087 | 7.979871e-62 | 1.820907e-58 |
| MsG0080048996.01 | MsG0880046991.01 | 0.840486 | 8.446137e-58 | 1.204918e-54 |
| MsG0080049140.01 | MsG0880046991.01 | 0.800391 | 1.473088e-48 | 6.851073e-46 |
| MsG0180000111.01 | MsG0880046991.01 | 0.824734 | 6.872878e-54 | 6.140464e-51 |
| MsG0180001588.01 | MsG0880046991.01 | 0.816455 | 5.481370e-52 | 3.885623e-49 |
| MsG0880044989.01 | MsG0880046991.01 | 0.819816 | 9.523487e-53 | 7.406495e-50 |
| MsG0880045612.01 | MsG0880046991.01 | 0.823368 | 1.438336e-53 | 1.235884e-50 |
| MsG0880046922.01 | MsG0880046991.01 | 0.823087 | 1.673041e-53 | 1.426433e-50 |
| MsG0880046991.01 | MsG0880047440.01 | 0.810502 | 1.116453e-50 | 6.741251e-48 |
| MsG0880046991.01 | MsG0880047649.01 | 0.808048 | 3.750242e-50 | 2.122354e-47 |
| MsG0180002984.01 | MsG0880046991.01 | 0.801898 | 7.246163e-49 | 3.501126e-46 |
| MsG0180003427.01 | MsG0880046991.01 | 0.812349 | 4.433032e-51 | 2.811980e-48 |
| MsG0180004027.01 | MsG0880046991.01 | 0.800990 | 1.111879e-48 | 5.250682e-46 |
| MsG0180004126.01 | MsG0880046991.01 | 0.806226 | 9.115402e-50 | 4.921202e-47 |
| MsG0180004375.01 | MsG0880046991.01 | 0.819641 | 1.043930e-52 | 8.078813e-50 |
| MsG0180004661.01 | MsG0880046991.01 | 0.816984 | 4.172152e-52 | 3.001037e-49 |
| MsG0180005002.01 | MsG0880046991.01 | 0.866245 | 3.282427e-65 | 1.098836e-61 |
| MsG0180005435.01 | MsG0880046991.01 | 0.823200 | 1.574186e-53 | 1.346350e-50 |
| MsG0180005553.01 | MsG0880046991.01 | 0.811980 | 5.337663e-51 | 3.351903e-48 |
| MsG0180006026.01 | MsG0880046991.01 | 0.815104 | 1.096988e-51 | 7.493694e-49 |
| MsG0180006133.01 | MsG0880046991.01 | 0.833932 | 4.013528e-56 | 4.691650e-53 |
| MsG0780040364.01 | MsG0880046991.01 | 0.839518 | 1.510740e-57 | 2.091374e-54 |
| MsG0780040365.01 | MsG0880046991.01 | 0.806705 | 7.225301e-50 | 3.948510e-47 |
| MsG0780040509.01 | MsG0880046991.01 | 0.815259 | 1.013095e-51 | 6.950337e-49 |
| MsG0780041063.01 | MsG0880046991.01 | 0.813681 | 2.263069e-51 | 1.487670e-48 |
| MsG0780041143.01 | MsG0880046991.01 | 0.847963 | 8.290396e-60 | 1.498325e-56 |
| MsG0880042366.01 | MsG0880046991.01 | 0.820580 | 6.362100e-53 | 5.053561e-50 |
| MsG0880043095.01 | MsG0880046991.01 | 0.806843 | 6.754351e-50 | 3.704550e-47 |
| MsG0880043684.01 | MsG0880046991.01 | 0.809899 | 1.506234e-50 | 8.952029e-48 |
| MsG0880043714.01 | MsG0880046991.01 | 0.812301 | 4.542513e-51 | 2.877632e-48 |
| MsG0380011846.01 | MsG0880046991.01 | 0.825790 | 3.869084e-54 | 3.562315e-51 |
| MsG0380012818.01 | MsG0880046991.01 | 0.847316 | 1.248882e-59 | 2.210862e-56 |
| MsG0380013041.01 | MsG0880046991.01 | 0.818506 | 1.892091e-52 | 1.418938e-49 |
| MsG0680031616.01 | MsG0880046991.01 | 0.850620 | 1.509727e-60 | 2.974879e-57 |
| MsG0480018526.01 | MsG0880046991.01 | 0.813712 | 2.228171e-51 | 1.465998e-48 |
| MsG0480018785.01 | MsG0880046991.01 | 0.800098 | 1.690137e-48 | 7.802064e-46 |
| MsG0480019635.01 | MsG0880046991.01 | 0.811775 | 5.913104e-51 | 3.692974e-48 |
| MsG0480023262.01 | MsG0880046991.01 | 0.813636 | 2.315427e-51 | 1.520203e-48 |
| MsG0480023296.01 | MsG0880046991.01 | 0.804944 | 1.693768e-49 | 8.848512e-47 |
| MsG0480023653.01 | MsG0880046991.01 | 0.866016 | 3.879424e-65 | 1.288216e-61 |
| MsG0580024388.01 | MsG0880046991.01 | 0.840271 | 9.615202e-58 | 1.362469e-54 |
| MsG0580024657.01 | MsG0880046991.01 | 0.813522 | 2.452677e-51 | 1.605399e-48 |
| MsG0580024787.01 | MsG0880046991.01 | 0.818884 | 1.552741e-52 | 1.176742e-49 |
| MsG0580024954.01 | MsG0880046991.01 | 0.817778 | 2.763600e-52 | 2.031504e-49 |
| MsG0380015350.01 | MsG0880046991.01 | 0.826228 | 3.043119e-54 | 2.836952e-51 |
| MsG0380015552.01 | MsG0880046991.01 | 0.803890 | 2.808885e-49 | 1.428116e-46 |
| MsG0380015816.01 | MsG0880046991.01 | 0.806735 | 7.120615e-50 | 3.894394e-47 |
| MsG0380016091.01 | MsG0880046991.01 | 0.831004 | 2.133496e-55 | 2.285679e-52 |
| MsG0380016225.01 | MsG0880046991.01 | 0.835085 | 2.059978e-56 | 2.492267e-53 |
| MsG0380016449.01 | MsG0880046991.01 | 0.828014 | 1.137680e-54 | 1.117001e-51 |
| MsG0380016703.01 | MsG0880046991.01 | 0.802629 | 5.123172e-49 | 2.521829e-46 |
| MsG0380017024.01 | MsG0880046991.01 | 0.818136 | 2.294275e-52 | 1.703114e-49 |
| MsG0380017361.01 | MsG0880046991.01 | 0.809680 | 1.678971e-50 | 9.921574e-48 |
| MsG0580028330.01 | MsG0880046991.01 | 0.803555 | 3.296663e-49 | 1.661755e-46 |
| MsG0580028756.01 | MsG0880046991.01 | 0.806071 | 9.830545e-50 | 5.286013e-47 |
| MsG0580028923.01 | MsG0880046991.01 | 0.818980 | 1.476788e-52 | 1.122246e-49 |
| MsG0580029261.01 | MsG0880046991.01 | 0.815469 | 9.100964e-52 | 6.280387e-49 |
| MsG0580029591.01 | MsG0880046991.01 | 0.831577 | 1.542659e-55 | 1.681163e-52 |
| MsG0280008407.01 | MsG0880046991.01 | 0.809587 | 1.758184e-50 | 1.036423e-47 |
| MsG0280009866.01 | MsG0880046991.01 | 0.869521 | 2.910640e-66 | 1.095832e-62 |
| MsG0780038373.01 | MsG0880046991.01 | 0.805702 | 1.174896e-49 | 6.258585e-47 |
| MsG0780038393.01 | MsG0880046991.01 | 0.888639 | 4.937617e-73 | 3.856358e-69 |
| MsG0780039303.01 | MsG0880046991.01 | 0.828666 | 7.917151e-55 | 7.921573e-52 |
| MsG0780039861.01 | MsG0880046991.01 | 0.822870 | 1.879833e-53 | 1.592873e-50 |
| MsG0780040118.01 | MsG0880046991.01 | 0.801193 | 1.010813e-48 | 4.797548e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046991.01.T01 | MTR_2g020360 | 76.259 | 139 | 32 | 1 | 1 | 138 | 1 | 139 | 1.61e-68 | 203 |
| MsG0880046991.01.T01 | MTR_2g020360 | 76.259 | 139 | 32 | 1 | 1 | 138 | 1 | 139 | 6.78e-68 | 202 |
| MsG0880046991.01.T01 | MTR_2g020360 | 78.862 | 123 | 26 | 0 | 16 | 138 | 17 | 139 | 7.29e-65 | 194 |
| MsG0880046991.01.T01 | MTR_4g118750 | 72.308 | 130 | 16 | 3 | 12 | 139 | 13 | 124 | 1.51e-54 | 168 |
| MsG0880046991.01.T01 | MTR_8g099920 | 48.936 | 141 | 63 | 4 | 1 | 137 | 1 | 136 | 1.22e-35 | 120 |
| MsG0880046991.01.T01 | MTR_8g099920 | 48.252 | 143 | 63 | 5 | 1 | 137 | 1 | 138 | 1.06e-33 | 115 |
| MsG0880046991.01.T01 | MTR_1g081920 | 65.385 | 78 | 22 | 2 | 57 | 132 | 12 | 86 | 2.52e-24 | 90.1 |
| MsG0880046991.01.T01 | MTR_8g099920 | 44.762 | 105 | 47 | 5 | 1 | 99 | 1 | 100 | 7.37e-14 | 63.9 |
| MsG0880046991.01.T01 | MTR_8g073750 | 93.548 | 31 | 2 | 0 | 86 | 116 | 23 | 53 | 4.87e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046991.01.T01 | AT4G25050 | 53.957 | 139 | 58 | 1 | 1 | 139 | 1 | 133 | 2.41e-40 | 132 |
| MsG0880046991.01.T01 | AT4G25050 | 49.669 | 151 | 58 | 2 | 1 | 139 | 1 | 145 | 8.28e-37 | 123 |
| MsG0880046991.01.T01 | AT1G54630 | 53.237 | 139 | 60 | 3 | 1 | 138 | 1 | 135 | 1.23e-36 | 122 |
| MsG0880046991.01.T01 | AT1G54580 | 54.783 | 115 | 44 | 1 | 24 | 138 | 29 | 135 | 2.63e-35 | 119 |
| MsG0880046991.01.T01 | AT5G27200 | 50.000 | 138 | 54 | 4 | 3 | 139 | 16 | 139 | 1.10e-34 | 117 |
| MsG0880046991.01.T01 | AT3G05020 | 48.889 | 135 | 66 | 2 | 6 | 137 | 2 | 136 | 1.01e-33 | 115 |
| MsG0880046991.01.T01 | AT1G54630 | 48.485 | 99 | 46 | 3 | 1 | 98 | 1 | 95 | 5.24e-17 | 71.6 |
Find 52 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAAAGGGAAACTGATTT+TGG | 0.126186 | 8:+80730423 | None:intergenic |
| ATCAGTTTCCCTTTCAATTA+AGG | 0.135610 | 8:-80730418 | MsG0880046991.01.T01:CDS |
| AGCTCCAAGTGCAGAAAATT+TGG | 0.215999 | 8:+80729570 | None:intergenic |
| CAATCATGTCTGCTGCTTCT+TGG | 0.254760 | 8:+80728807 | None:intergenic |
| ATGGGACTTGAGGAGGAATT+TGG | 0.301410 | 8:-80728872 | MsG0880046991.01.T01:CDS |
| TAGCGAAAAGCTTGTTTGTT+AGG | 0.311442 | 8:+80730718 | None:intergenic |
| ATGCATGTGTGTCCTTGTTC+CGG | 0.332953 | 8:+80728747 | None:intergenic |
| CTTCTTTACGGTTTCTGCTT+TGG | 0.341651 | 8:+80729654 | None:intergenic |
| AGAGAGAAAGAGAGAGAAAA+TGG | 0.356429 | 8:+80730634 | None:intergenic |
| TCAGTTTCCCTTTCAATTAA+GGG | 0.363477 | 8:-80730417 | MsG0880046991.01.T01:CDS |
| CATCCATTACATTGCAGTCT+AGG | 0.375528 | 8:-80730383 | MsG0880046991.01.T01:CDS |
| TGCATGTGTGTCCTTGTTCC+GGG | 0.389703 | 8:+80728748 | None:intergenic |
| AATGTCACAGACCTTCTTTA+CGG | 0.390728 | 8:+80729642 | None:intergenic |
| GAAGAGAGTGTGTGTGTTGT+TGG | 0.396118 | 8:+80730668 | None:intergenic |
| CTCAGCATTCAAACAATCTC+TGG | 0.432166 | 8:-80730550 | MsG0880046991.01.T01:intron |
| GTTTGTTAGGTGTGTATAGT+TGG | 0.443283 | 8:+80730731 | None:intergenic |
| CCAGATGAGTCCTCTGTCAC+TGG | 0.444364 | 8:-80729598 | MsG0880046991.01.T01:CDS |
| GGCATTCCCCTTAATTGAAA+GGG | 0.445874 | 8:+80730410 | None:intergenic |
| CTTGGACGGTGGTAATGGAC+TGG | 0.447324 | 8:+80728825 | None:intergenic |
| TGCTTCTTGGACGGTGGTAA+TGG | 0.455810 | 8:+80728820 | None:intergenic |
| ATCCATTACATTGCAGTCTA+GGG | 0.489304 | 8:-80730382 | MsG0880046991.01.T01:CDS |
| TACCCTAGACTGCAATGTAA+TGG | 0.496902 | 8:+80730380 | None:intergenic |
| CTGTAGGTTGAGATTGTGAT+GGG | 0.514505 | 8:-80728890 | MsG0880046991.01.T01:intron |
| AGGCATTCCCCTTAATTGAA+AGG | 0.514759 | 8:+80730409 | None:intergenic |
| CCAGTGACAGAGGACTCATC+TGG | 0.516812 | 8:+80729598 | None:intergenic |
| CATGTCTGCTGCTTCTTGGA+CGG | 0.518674 | 8:+80728811 | None:intergenic |
| CAGTTTCCCTTTCAATTAAG+GGG | 0.519673 | 8:-80730416 | MsG0880046991.01.T01:CDS |
| TACACAATGGCATCCATCAC+AGG | 0.524640 | 8:-80730588 | MsG0880046991.01.T01:exon |
| GAATGCTGAGACGGAGAATG+AGG | 0.525070 | 8:+80730563 | None:intergenic |
| CTGCAATGTAATGGATGGAA+AGG | 0.533896 | 8:+80730389 | None:intergenic |
| CTAGACTGCAATGTAATGGA+TGG | 0.538900 | 8:+80730384 | None:intergenic |
| AGAGAGAGAAAATGGACGGA+GGG | 0.548825 | 8:+80730642 | None:intergenic |
| CAAAGCAGAAACCGTAAAGA+AGG | 0.560268 | 8:-80729653 | MsG0880046991.01.T01:CDS |
| GAATGAGTAATAACAAGTGT+GGG | 0.563297 | 8:+80730690 | None:intergenic |
| AGATTGTTTGAATGCTGAGA+CGG | 0.570818 | 8:+80730554 | None:intergenic |
| CCTGTAGGTTGAGATTGTGA+TGG | 0.575547 | 8:-80728891 | MsG0880046991.01.T01:intron |
| AGAAAGAGAGAGAAAATGGA+CGG | 0.586764 | 8:+80730638 | None:intergenic |
| TGGAGCTGACTCTCTCGATA+CGG | 0.589016 | 8:-80729554 | MsG0880046991.01.T01:intron |
| GGAGAATGAGGTTCCTGTGA+TGG | 0.592118 | 8:+80730575 | None:intergenic |
| GTCTGCTGCTTCTTGGACGG+TGG | 0.592160 | 8:+80728814 | None:intergenic |
| GGAATGAGTAATAACAAGTG+TGG | 0.595734 | 8:+80730689 | None:intergenic |
| TGAGATTGTGATGGGACTTG+AGG | 0.596018 | 8:-80728882 | MsG0880046991.01.T01:CDS |
| GGGTTAGAGAATCTAGCACC+AGG | 0.601875 | 8:+80730444 | None:intergenic |
| TTGGACGGTGGTAATGGACT+GGG | 0.607190 | 8:+80728826 | None:intergenic |
| GATTGTGATGGGACTTGAGG+AGG | 0.609784 | 8:-80728879 | MsG0880046991.01.T01:CDS |
| TAGTAATGCAATAATTCTAG+AGG | 0.611124 | 8:+80728627 | None:intergenic |
| TTAAGTTCAAACCCGGAACA+AGG | 0.611469 | 8:-80728759 | MsG0880046991.01.T01:exon |
| ATTCACATCTAACAGGTACC+TGG | 0.634844 | 8:-80730462 | MsG0880046991.01.T01:intron |
| TTTGGACTCTCCAGTGACAG+AGG | 0.640603 | 8:+80729588 | None:intergenic |
| AAGAGAGAGAAAATGGACGG+AGG | 0.654416 | 8:+80730641 | None:intergenic |
| GCACATGTAACTTGAAAGCG+AGG | 0.680439 | 8:+80730357 | None:intergenic |
| AGAGTGCTTAAGTTCAAACC+CGG | 0.684631 | 8:-80728766 | MsG0880046991.01.T01:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATAATTTTAGTTTATACA+TGG | + | Chr8:80729162-80729181 | None:intergenic | 10.0% |
| !! | AATATTACGTACATATTATA+AGG | - | Chr8:80729186-80729205 | MsG0880046991.01.T01:intron | 15.0% |
| !! | ATATTAATAGTAAAAATCCA+CGG | + | Chr8:80729621-80729640 | None:intergenic | 15.0% |
| !!! | ATTATGTTTTTTAATCTACA+TGG | - | Chr8:80730209-80730228 | MsG0880046991.01.T01:intron | 15.0% |
| !!! | ATTTTAAATATGAAACAAAC+AGG | + | Chr8:80730020-80730039 | None:intergenic | 15.0% |
| !! | AAAAAGATGTTATTCAGAAT+TGG | + | Chr8:80730080-80730099 | None:intergenic | 20.0% |
| !! | AATGATATTCTAAATAGAGA+AGG | + | Chr8:80730184-80730203 | None:intergenic | 20.0% |
| !! | ACAAACAATTCTATTCATTA+TGG | - | Chr8:80728774-80728793 | MsG0880046991.01.T01:exon | 20.0% |
| !! | AGTTGTATATTTGAATTGTT+TGG | - | Chr8:80729274-80729293 | MsG0880046991.01.T01:intron | 20.0% |
| !! | ATGATATTCTAAATAGAGAA+GGG | + | Chr8:80730183-80730202 | None:intergenic | 20.0% |
| !! | GTTGTATATTTGAATTGTTT+GGG | - | Chr8:80729275-80729294 | MsG0880046991.01.T01:intron | 20.0% |
| !! | TTGAACAATATATTTGATGT+TGG | - | Chr8:80729506-80729525 | MsG0880046991.01.T01:intron | 20.0% |
| !!! | AAATTTGTTCACATTGAAAT+TGG | + | Chr8:80729213-80729232 | None:intergenic | 20.0% |
| !!! | ATTCATTATGGTTTAATTTG+TGG | - | Chr8:80728786-80728805 | MsG0880046991.01.T01:CDS | 20.0% |
| !!! | GGATTTTTACTATTAATATC+AGG | - | Chr8:80729622-80729641 | MsG0880046991.01.T01:CDS | 20.0% |
| !!! | GGGTTTTTTAATTTTATCTT+AGG | - | Chr8:80730600-80730619 | MsG0880046991.01.T01:exon | 20.0% |
| !!! | TTTTATTTATGTAGAACTTG+TGG | - | Chr8:80730696-80730715 | MsG0880046991.01.T01:five_prime_UTR | 20.0% |
| ! | AAATCTATCTGTTTAAGTGT+TGG | - | Chr8:80730739-80730758 | MsG0880046991.01.T01:five_prime_UTR | 25.0% |
| ! | AATAACAACCTAATGAGAAA+TGG | + | Chr8:80729989-80730008 | None:intergenic | 25.0% |
| ! | ATTTGATGTTGGAATTATCA+AGG | - | Chr8:80729517-80729536 | MsG0880046991.01.T01:intron | 25.0% |
| ! | TAGTAATGCAATAATTCTAG+AGG | + | Chr8:80730675-80730694 | None:intergenic | 25.0% |
| ! | TGACATTGTCAAAAAACAAT+TGG | - | Chr8:80729673-80729692 | MsG0880046991.01.T01:intron | 25.0% |
| ! | TGGAATAAAACAAAACATCA+TGG | + | Chr8:80729100-80729119 | None:intergenic | 25.0% |
| ! | TTAAAATCAGAAGACAGTTA+TGG | - | Chr8:80730033-80730052 | MsG0880046991.01.T01:intron | 25.0% |
| !! | AGAGTTTTTATATTTGTGTG+AGG | - | Chr8:80730578-80730597 | MsG0880046991.01.T01:CDS | 25.0% |
| !! | AGTTTTTATATTTGTGTGAG+GGG | - | Chr8:80730580-80730599 | MsG0880046991.01.T01:CDS | 25.0% |
| !! | GAGTTTTTATATTTGTGTGA+GGG | - | Chr8:80730579-80730598 | MsG0880046991.01.T01:CDS | 25.0% |
| !! | TCTGAATAACATCTTTTTCT+TGG | - | Chr8:80730082-80730101 | MsG0880046991.01.T01:intron | 25.0% |
| !!! | ATTTTATTTTTGTCTCTCCA+GGG | - | Chr8:80729136-80729155 | MsG0880046991.01.T01:intron | 25.0% |
| ATCAGTTTCCCTTTCAATTA+AGG | - | Chr8:80728881-80728900 | MsG0880046991.01.T01:CDS | 30.0% | |
| CTAGAAAAGATACATAACAG+AGG | + | Chr8:80730359-80730378 | None:intergenic | 30.0% | |
| CTCAAAAACCATTTCTCATT+AGG | - | Chr8:80729978-80729997 | MsG0880046991.01.T01:intron | 30.0% | |
| GAATGAGTAATAACAAGTGT+GGG | + | Chr8:80728612-80728631 | None:intergenic | 30.0% | |
| TATGCTAATTCACATCTAAC+AGG | - | Chr8:80728830-80728849 | MsG0880046991.01.T01:CDS | 30.0% | |
| TCAGTTTCCCTTTCAATTAA+GGG | - | Chr8:80728882-80728901 | MsG0880046991.01.T01:CDS | 30.0% | |
| !! | ATTGAAAGGGAAACTGATTT+TGG | + | Chr8:80728879-80728898 | None:intergenic | 30.0% |
| !! | TTGAAAGGGAAACTGATTTT+GGG | + | Chr8:80728878-80728897 | None:intergenic | 30.0% |
| !!! | CATTTTATTTTTGTCTCTCC+AGG | - | Chr8:80729135-80729154 | MsG0880046991.01.T01:intron | 30.0% |
| AAATGTTCTGCAGACATACA+TGG | + | Chr8:80729120-80729139 | None:intergenic | 35.0% | |
| AAATGTTGCTAGTTCAGAAG+AGG | - | Chr8:80729377-80729396 | MsG0880046991.01.T01:intron | 35.0% | |
| AATGTCACAGACCTTCTTTA+CGG | + | Chr8:80729660-80729679 | None:intergenic | 35.0% | |
| AGAAAGAGAGAGAAAATGGA+CGG | + | Chr8:80728664-80728683 | None:intergenic | 35.0% | |
| AGACTTGTCAAATTTCCTGT+AGG | - | Chr8:80730393-80730412 | MsG0880046991.01.T01:CDS | 35.0% | |
| AGAGAGAAAGAGAGAGAAAA+TGG | + | Chr8:80728668-80728687 | None:intergenic | 35.0% | |
| AGATTGTTTGAATGCTGAGA+CGG | + | Chr8:80728748-80728767 | None:intergenic | 35.0% | |
| AGGGAGTAAAAGAGTTTAGA+GGG | + | Chr8:80728985-80729004 | None:intergenic | 35.0% | |
| ATCCATTACATTGCAGTCTA+GGG | - | Chr8:80728917-80728936 | MsG0880046991.01.T01:intron | 35.0% | |
| CACACAGAATCAAATATCAG+AGG | + | Chr8:80729553-80729572 | None:intergenic | 35.0% | |
| CAGTTTCCCTTTCAATTAAG+GGG | - | Chr8:80728883-80728902 | MsG0880046991.01.T01:CDS | 35.0% | |
| CTCTGATATTTGATTCTGTG+TGG | - | Chr8:80729551-80729570 | MsG0880046991.01.T01:intron | 35.0% | |
| GGAATGAGTAATAACAAGTG+TGG | + | Chr8:80728613-80728632 | None:intergenic | 35.0% | |
| TAGGGAGTAAAAGAGTTTAG+AGG | + | Chr8:80728986-80729005 | None:intergenic | 35.0% | |
| TATTGCCTTATCTAAGTGTG+TGG | - | Chr8:80729876-80729895 | MsG0880046991.01.T01:intron | 35.0% | |
| TCATGTACTTCTTGCTTTCT+GGG | - | Chr8:80729899-80729918 | MsG0880046991.01.T01:intron | 35.0% | |
| TGTCCTTTAGTATATTGCTG+TGG | - | Chr8:80730113-80730132 | MsG0880046991.01.T01:intron | 35.0% | |
| TTGCCACAGCAATATACTAA+AGG | + | Chr8:80730119-80730138 | None:intergenic | 35.0% | |
| ! | GTTTGTTAGGTGTGTATAGT+TGG | + | Chr8:80728571-80728590 | None:intergenic | 35.0% |
| ! | TAGCGAAAAGCTTGTTTGTT+AGG | + | Chr8:80728584-80728603 | None:intergenic | 35.0% |
| !!! | ATGCTATCTTGTGCTGTTTT+TGG | - | Chr8:80729929-80729948 | MsG0880046991.01.T01:intron | 35.0% |
| !!! | TTTTAGTTTATACATGGCCC+TGG | + | Chr8:80729156-80729175 | None:intergenic | 35.0% |
| AAGAGTTTAGAGGGTTTCAG+AGG | + | Chr8:80728976-80728995 | None:intergenic | 40.0% | |
| AGCTCCAAGTGCAGAAAATT+TGG | + | Chr8:80729732-80729751 | None:intergenic | 40.0% | |
| AGGCATTCCCCTTAATTGAA+AGG | + | Chr8:80728893-80728912 | None:intergenic | 40.0% | |
| ATCTCTCTCTCTCTACACAA+TGG | - | Chr8:80728698-80728717 | MsG0880046991.01.T01:three_prime_UTR | 40.0% | |
| ATTCACATCTAACAGGTACC+TGG | - | Chr8:80728837-80728856 | MsG0880046991.01.T01:CDS | 40.0% | |
| CAAAGCAGAAACCGTAAAGA+AGG | - | Chr8:80729646-80729665 | MsG0880046991.01.T01:CDS | 40.0% | |
| CAGGGTGATAAAAGCAAGAA+GGG | + | Chr8:80730263-80730282 | None:intergenic | 40.0% | |
| CATCCATTACATTGCAGTCT+AGG | - | Chr8:80728916-80728935 | MsG0880046991.01.T01:intron | 40.0% | |
| CATGACCACACACTTAGATA+AGG | + | Chr8:80729884-80729903 | None:intergenic | 40.0% | |
| CTCAGCATTCAAACAATCTC+TGG | - | Chr8:80728749-80728768 | MsG0880046991.01.T01:three_prime_UTR | 40.0% | |
| CTTCTTTACGGTTTCTGCTT+TGG | + | Chr8:80729648-80729667 | None:intergenic | 40.0% | |
| GGCATTCCCCTTAATTGAAA+GGG | + | Chr8:80728892-80728911 | None:intergenic | 40.0% | |
| GTCATGTACTTCTTGCTTTC+TGG | - | Chr8:80729898-80729917 | MsG0880046991.01.T01:intron | 40.0% | |
| TACCCTAGACTGCAATGTAA+TGG | + | Chr8:80728922-80728941 | None:intergenic | 40.0% | |
| TCATGCTGAAGTTTCCACTT+AGG | + | Chr8:80730307-80730326 | None:intergenic | 40.0% | |
| TTAAGTTCAAACCCGGAACA+AGG | - | Chr8:80730540-80730559 | MsG0880046991.01.T01:intron | 40.0% | |
| ! | AGAGTGCTTAAGTTCAAACC+CGG | - | Chr8:80730533-80730552 | MsG0880046991.01.T01:intron | 40.0% |
| ! | CTAGACTGCAATGTAATGGA+TGG | + | Chr8:80728918-80728937 | None:intergenic | 40.0% |
| ! | CTGTAGGTTGAGATTGTGAT+GGG | - | Chr8:80730409-80730428 | MsG0880046991.01.T01:CDS | 40.0% |
| ! | GAGTCCAAATTTTCTGCACT+TGG | - | Chr8:80729725-80729744 | MsG0880046991.01.T01:intron | 40.0% |
| !! | AGAGGAGAATGGATTTGTTG+TGG | - | Chr8:80729395-80729414 | MsG0880046991.01.T01:intron | 40.0% |
| !! | CTGCAATGTAATGGATGGAA+AGG | + | Chr8:80728913-80728932 | None:intergenic | 40.0% |
| AACCACTAAAGCTGCCTAAG+TGG | - | Chr8:80730290-80730309 | MsG0880046991.01.T01:intron | 45.0% | |
| AAGAGAGAGAAAATGGACGG+AGG | + | Chr8:80728661-80728680 | None:intergenic | 45.0% | |
| AGAGAGAGAAAATGGACGGA+GGG | + | Chr8:80728660-80728679 | None:intergenic | 45.0% | |
| ATGCATGTGTGTCCTTGTTC+CGG | + | Chr8:80730555-80730574 | None:intergenic | 45.0% | |
| ATGGGACTTGAGGAGGAATT+TGG | - | Chr8:80730427-80730446 | MsG0880046991.01.T01:CDS | 45.0% | |
| CCATCACAATCTCAACCTAC+AGG | + | Chr8:80730411-80730430 | None:intergenic | 45.0% | |
| CTGTTGTGATATAAACGCCG+TGG | - | Chr8:80729601-80729620 | MsG0880046991.01.T01:CDS | 45.0% | |
| CTTTAGTGGTTCATGAGGCA+GGG | + | Chr8:80730281-80730300 | None:intergenic | 45.0% | |
| GCACATGTAACTTGAAAGCG+AGG | + | Chr8:80728945-80728964 | None:intergenic | 45.0% | |
| GCAGGGTGATAAAAGCAAGA+AGG | + | Chr8:80730264-80730283 | None:intergenic | 45.0% | |
| GCTAGTTCAGAAGAGGAGAA+TGG | - | Chr8:80729384-80729403 | MsG0880046991.01.T01:intron | 45.0% | |
| TACACAATGGCATCCATCAC+AGG | - | Chr8:80728711-80728730 | MsG0880046991.01.T01:three_prime_UTR | 45.0% | |
| ! | CAATCATGTCTGCTGCTTCT+TGG | + | Chr8:80730495-80730514 | None:intergenic | 45.0% |
| ! | CCTGTAGGTTGAGATTGTGA+TGG | - | Chr8:80730408-80730427 | MsG0880046991.01.T01:CDS | 45.0% |
| ! | GAAGAGAGTGTGTGTGTTGT+TGG | + | Chr8:80728634-80728653 | None:intergenic | 45.0% |
| ! | TGAGATTGTGATGGGACTTG+AGG | - | Chr8:80730417-80730436 | MsG0880046991.01.T01:CDS | 45.0% |
| ! | TTCCACTTAGGCAGCTTTAG+TGG | + | Chr8:80730295-80730314 | None:intergenic | 45.0% |
| !! | AATAAAATAAAAGAAAATAT+AGG | + | Chr8:80729005-80729024 | None:intergenic | 5.0% |
| !! | ATAAAATAAAAGAAAATATA+GGG | + | Chr8:80729004-80729023 | None:intergenic | 5.0% |
| !!! | ATTTTCTTTTATTTTATTTT+TGG | - | Chr8:80729007-80729026 | MsG0880046991.01.T01:intron | 5.0% |
| GAATGCTGAGACGGAGAATG+AGG | + | Chr8:80728739-80728758 | None:intergenic | 50.0% | |
| GCTTTAGTGGTTCATGAGGC+AGG | + | Chr8:80730282-80730301 | None:intergenic | 50.0% | |
| GGAGAATGAGGTTCCTGTGA+TGG | + | Chr8:80728727-80728746 | None:intergenic | 50.0% | |
| GGGTTAGAGAATCTAGCACC+AGG | + | Chr8:80728858-80728877 | None:intergenic | 50.0% | |
| TGCATGTGTGTCCTTGTTCC+GGG | + | Chr8:80730554-80730573 | None:intergenic | 50.0% | |
| TGCTTCTTGGACGGTGGTAA+TGG | + | Chr8:80730482-80730501 | None:intergenic | 50.0% | |
| TTTGGACTCTCCAGTGACAG+AGG | + | Chr8:80729714-80729733 | None:intergenic | 50.0% | |
| ! | CATGTCTGCTGCTTCTTGGA+CGG | + | Chr8:80730491-80730510 | None:intergenic | 50.0% |
| ! | GATTGTGATGGGACTTGAGG+AGG | - | Chr8:80730420-80730439 | MsG0880046991.01.T01:CDS | 50.0% |
| ! | GGCAGCTTTAGTGGTTCATG+AGG | + | Chr8:80730286-80730305 | None:intergenic | 50.0% |
| ! | TGGAGCTGACTCTCTCGATA+CGG | - | Chr8:80729745-80729764 | MsG0880046991.01.T01:intron | 50.0% |
| !! | TTGGACGGTGGTAATGGACT+GGG | + | Chr8:80730476-80730495 | None:intergenic | 50.0% |
| CCAGATGAGTCCTCTGTCAC+TGG | - | Chr8:80729701-80729720 | MsG0880046991.01.T01:intron | 55.0% | |
| CCAGTGACAGAGGACTCATC+TGG | + | Chr8:80729704-80729723 | None:intergenic | 55.0% | |
| !! | CTTGGACGGTGGTAATGGAC+TGG | + | Chr8:80730477-80730496 | None:intergenic | 55.0% |
| ! | GTCTGCTGCTTCTTGGACGG+TGG | + | Chr8:80730488-80730507 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 80728562 | 80730759 | 80728562 | ID=MsG0880046991.01;Name=MsG0880046991.01 |
| Chr8 | mRNA | 80728562 | 80730759 | 80728562 | ID=MsG0880046991.01.T01;Parent=MsG0880046991.01;Name=MsG0880046991.01.T01;_AED=0.49;_eAED=0.49;_QI=155|1|1|1|1|1|4|216|139 |
| Chr8 | exon | 80728562 | 80728906 | 80728562 | ID=MsG0880046991.01.T01:exon:10480;Parent=MsG0880046991.01.T01 |
| Chr8 | exon | 80729555 | 80729677 | 80729555 | ID=MsG0880046991.01.T01:exon:10479;Parent=MsG0880046991.01.T01 |
| Chr8 | exon | 80730356 | 80730469 | 80730356 | ID=MsG0880046991.01.T01:exon:10478;Parent=MsG0880046991.01.T01 |
| Chr8 | exon | 80730551 | 80730759 | 80730551 | ID=MsG0880046991.01.T01:exon:10477;Parent=MsG0880046991.01.T01 |
| Chr8 | five_prime_UTR | 80730605 | 80730759 | 80730605 | ID=MsG0880046991.01.T01:five_prime_utr;Parent=MsG0880046991.01.T01 |
| Chr8 | CDS | 80730551 | 80730604 | 80730551 | ID=MsG0880046991.01.T01:cds;Parent=MsG0880046991.01.T01 |
| Chr8 | CDS | 80730356 | 80730469 | 80730356 | ID=MsG0880046991.01.T01:cds;Parent=MsG0880046991.01.T01 |
| Chr8 | CDS | 80729555 | 80729677 | 80729555 | ID=MsG0880046991.01.T01:cds;Parent=MsG0880046991.01.T01 |
| Chr8 | CDS | 80728778 | 80728906 | 80728778 | ID=MsG0880046991.01.T01:cds;Parent=MsG0880046991.01.T01 |
| Chr8 | three_prime_UTR | 80728562 | 80728777 | 80728562 | ID=MsG0880046991.01.T01:three_prime_utr;Parent=MsG0880046991.01.T01 |
| Gene Sequence |
| Protein sequence |
