Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017180.01.T01 | XP_013461730.1 | 87.5 | 360 | 29 | 4 | 1 | 346 | 1 | 358 | 0 | 624 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017180.01.T01 | Q9FMH5 | 48.665 | 337 | 145 | 7 | 3 | 327 | 12 | 332 | 2.58E-103 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017180.01.T01 | A0A072VC73 | 87.500 | 360 | 29 | 4 | 1 | 346 | 1 | 358 | 0.0 | 624 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001293.01 | MsG0380017180.01 | 0.826633 | 2.437291e-54 | 2.298445e-51 |
| MsG0180002397.01 | MsG0380017180.01 | 0.801583 | 8.410038e-49 | 4.030871e-46 |
| MsG0180003857.01 | MsG0380017180.01 | 0.829514 | 4.933013e-55 | 5.059896e-52 |
| MsG0180004120.01 | MsG0380017180.01 | 0.810580 | 1.074234e-50 | 6.499804e-48 |
| MsG0180004538.01 | MsG0380017180.01 | 0.826083 | 3.295929e-54 | 3.059778e-51 |
| MsG0180004583.01 | MsG0380017180.01 | 0.802313 | 5.953689e-49 | 2.907300e-46 |
| MsG0180004652.01 | MsG0380017180.01 | 0.802197 | 6.290391e-49 | 3.062332e-46 |
| MsG0180006133.01 | MsG0380017180.01 | 0.815483 | 9.034873e-52 | 6.237178e-49 |
| MsG0380014666.01 | MsG0380017180.01 | 0.829841 | 4.107340e-55 | 4.254187e-52 |
| MsG0380015340.01 | MsG0380017180.01 | 0.803329 | 3.672183e-49 | 1.840135e-46 |
| MsG0380015394.01 | MsG0380017180.01 | 0.818800 | 1.622750e-52 | 1.226841e-49 |
| MsG0380016027.01 | MsG0380017180.01 | 0.811286 | 7.552456e-51 | 4.656174e-48 |
| MsG0380016091.01 | MsG0380017180.01 | 0.803986 | 2.683046e-49 | 1.367484e-46 |
| MsG0380016092.01 | MsG0380017180.01 | 0.801605 | 8.321445e-49 | 3.990612e-46 |
| MsG0380016217.01 | MsG0380017180.01 | 0.813215 | 2.865249e-51 | 1.859668e-48 |
| MsG0380017180.01 | MsG0380017332.01 | 0.823450 | 1.376454e-53 | 1.185508e-50 |
| MsG0380017180.01 | MsG0380017632.01 | 0.803841 | 2.874990e-49 | 1.459861e-46 |
| MsG0380017180.01 | MsG0480018228.01 | 0.812123 | 4.967975e-51 | 3.131921e-48 |
| MsG0380017180.01 | MsG0480020856.01 | 0.817268 | 3.600681e-52 | 2.609937e-49 |
| MsG0380017180.01 | MsG0480021301.01 | 0.814051 | 1.876032e-51 | 1.245632e-48 |
| MsG0380017180.01 | MsG0480021773.01 | 0.809275 | 2.050333e-50 | 1.198623e-47 |
| MsG0380017180.01 | MsG0480021902.01 | 0.801931 | 7.132762e-49 | 3.449102e-46 |
| MsG0380017180.01 | MsG0480022784.01 | 0.826011 | 3.427610e-54 | 3.175758e-51 |
| MsG0380017180.01 | MsG0480023003.01 | 0.802011 | 6.868399e-49 | 3.328037e-46 |
| MsG0380017180.01 | MsG0480023706.01 | 0.837575 | 4.793685e-57 | 6.253354e-54 |
| MsG0380017180.01 | MsG0580024787.01 | 0.828132 | 1.065364e-54 | 1.049564e-51 |
| MsG0380017180.01 | MsG0580025186.01 | 0.833144 | 6.313089e-56 | 7.207145e-53 |
| MsG0380017180.01 | MsG0580028923.01 | 0.801926 | 7.149731e-49 | 3.456889e-46 |
| MsG0380017180.01 | MsG0580028927.01 | 0.806014 | 1.010381e-49 | 5.425262e-47 |
| MsG0380017180.01 | MsG0680031148.01 | 0.808836 | 2.546109e-50 | 1.470991e-47 |
| MsG0380017180.01 | MsG0680035776.01 | 0.822860 | 1.889541e-53 | 1.600692e-50 |
| MsG0380017180.01 | MsG0780040641.01 | 0.812533 | 4.040625e-51 | 2.575665e-48 |
| MsG0380017180.01 | MsG0780041359.01 | 0.835649 | 1.483720e-56 | 1.825826e-53 |
| MsG0380017180.01 | MsG0880043684.01 | 0.800804 | 1.213860e-48 | 5.704638e-46 |
| MsG0380017180.01 | MsG0880045439.01 | 0.818451 | 1.946817e-52 | 1.457958e-49 |
| MsG0380017180.01 | MsG0880045612.01 | 0.821424 | 4.067389e-53 | 3.307907e-50 |
| MsG0380017180.01 | MsG0880045647.01 | 0.834587 | 2.750331e-56 | 3.278539e-53 |
| MsG0380017180.01 | MsG0880046904.01 | 0.828494 | 8.716592e-55 | 8.678264e-52 |
| MsG0380017180.01 | MsG0880047649.01 | 0.845445 | 4.042841e-59 | 6.738721e-56 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017180.01.T01 | MTR_3g102520 | 87.500 | 360 | 29 | 4 | 1 | 346 | 1 | 358 | 0.0 | 624 |
| MsG0380017180.01.T01 | MTR_3g102510 | 73.259 | 359 | 62 | 5 | 1 | 346 | 1 | 338 | 0.0 | 512 |
| MsG0380017180.01.T01 | MTR_3g102530 | 65.294 | 340 | 96 | 6 | 1 | 327 | 1 | 331 | 1.25e-147 | 421 |
| MsG0380017180.01.T01 | MTR_1g018680 | 49.706 | 340 | 139 | 7 | 24 | 344 | 30 | 356 | 1.14e-98 | 297 |
| MsG0380017180.01.T01 | MTR_3g102560 | 48.060 | 335 | 124 | 8 | 1 | 321 | 2 | 300 | 3.46e-90 | 274 |
| MsG0380017180.01.T01 | MTR_3g102540 | 52.263 | 243 | 100 | 2 | 96 | 327 | 13 | 250 | 2.95e-79 | 244 |
| MsG0380017180.01.T01 | MTR_1g011470 | 43.295 | 261 | 134 | 2 | 79 | 327 | 148 | 406 | 2.48e-66 | 216 |
| MsG0380017180.01.T01 | MTR_3g088405 | 42.308 | 286 | 135 | 5 | 57 | 327 | 220 | 490 | 3.56e-66 | 218 |
| MsG0380017180.01.T01 | MTR_3g107970 | 43.130 | 262 | 133 | 3 | 79 | 327 | 200 | 458 | 1.79e-64 | 213 |
| MsG0380017180.01.T01 | MTR_3g088415 | 43.083 | 253 | 130 | 2 | 87 | 327 | 235 | 485 | 8.27e-62 | 206 |
| MsG0380017180.01.T01 | MTR_2g102520 | 42.222 | 270 | 138 | 4 | 74 | 328 | 197 | 463 | 7.40e-61 | 203 |
| MsG0380017180.01.T01 | MTR_2g102550 | 38.989 | 277 | 141 | 4 | 64 | 327 | 151 | 412 | 4.19e-58 | 195 |
| MsG0380017180.01.T01 | MTR_3g088415 | 48.205 | 195 | 99 | 1 | 85 | 279 | 233 | 425 | 3.84e-57 | 192 |
| MsG0380017180.01.T01 | MTR_3g088415 | 51.634 | 153 | 72 | 1 | 87 | 239 | 235 | 385 | 2.91e-48 | 168 |
| MsG0380017180.01.T01 | MTR_5g088980 | 33.992 | 253 | 147 | 5 | 83 | 323 | 156 | 400 | 2.42e-40 | 147 |
| MsG0380017180.01.T01 | MTR_8g074000 | 34.118 | 255 | 149 | 5 | 84 | 327 | 168 | 414 | 3.20e-39 | 145 |
| MsG0380017180.01.T01 | MTR_7g089080 | 34.962 | 266 | 155 | 7 | 72 | 323 | 177 | 438 | 7.02e-39 | 148 |
| MsG0380017180.01.T01 | MTR_5g023790 | 34.800 | 250 | 144 | 5 | 89 | 327 | 169 | 410 | 2.40e-37 | 140 |
| MsG0380017180.01.T01 | MTR_5g023790 | 39.474 | 190 | 107 | 3 | 89 | 278 | 169 | 350 | 1.55e-35 | 134 |
| MsG0380017180.01.T01 | MTR_5g023790 | 40.385 | 156 | 90 | 2 | 89 | 244 | 169 | 321 | 2.29e-29 | 116 |
| MsG0380017180.01.T01 | MTR_3g060770 | 31.111 | 225 | 126 | 6 | 127 | 328 | 60 | 278 | 1.15e-20 | 91.3 |
| MsG0380017180.01.T01 | MTR_3g060410 | 32.161 | 199 | 118 | 5 | 123 | 306 | 131 | 327 | 2.15e-20 | 91.7 |
| MsG0380017180.01.T01 | MTR_3g060400 | 28.346 | 254 | 145 | 8 | 76 | 304 | 5 | 246 | 3.18e-20 | 90.1 |
| MsG0380017180.01.T01 | MTR_3g460990 | 28.346 | 254 | 145 | 8 | 76 | 304 | 5 | 246 | 3.18e-20 | 90.1 |
| MsG0380017180.01.T01 | MTR_3g060820 | 32.828 | 198 | 108 | 6 | 126 | 304 | 49 | 240 | 4.63e-20 | 89.4 |
| MsG0380017180.01.T01 | MTR_3g061680 | 32.323 | 198 | 109 | 6 | 126 | 304 | 49 | 240 | 4.97e-19 | 86.7 |
| MsG0380017180.01.T01 | MTR_5g044040 | 45.333 | 75 | 41 | 0 | 149 | 223 | 7 | 81 | 5.03e-15 | 71.6 |
| MsG0380017180.01.T01 | MTR_8g063120 | 33.094 | 139 | 86 | 4 | 103 | 235 | 68 | 205 | 1.86e-12 | 67.4 |
| MsG0380017180.01.T01 | MTR_8g063120 | 33.094 | 139 | 86 | 4 | 103 | 235 | 68 | 205 | 3.60e-12 | 67.4 |
| MsG0380017180.01.T01 | MTR_5g011900 | 28.082 | 146 | 104 | 1 | 120 | 265 | 95 | 239 | 2.38e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017180.01.T01 | AT5G43080 | 48.665 | 337 | 145 | 7 | 3 | 327 | 12 | 332 | 2.63e-104 | 311 |
| MsG0380017180.01.T01 | AT5G43080 | 47.774 | 337 | 143 | 8 | 3 | 327 | 12 | 327 | 8.44e-101 | 302 |
| MsG0380017180.01.T01 | AT1G47230 | 46.491 | 342 | 156 | 7 | 3 | 327 | 11 | 342 | 1.04e-97 | 295 |
| MsG0380017180.01.T01 | AT1G47210 | 45.954 | 346 | 159 | 5 | 3 | 327 | 11 | 349 | 3.52e-97 | 294 |
| MsG0380017180.01.T01 | AT1G47230 | 46.356 | 343 | 156 | 8 | 3 | 327 | 11 | 343 | 5.55e-96 | 291 |
| MsG0380017180.01.T01 | AT1G47220 | 53.992 | 263 | 109 | 2 | 77 | 327 | 41 | 303 | 4.35e-90 | 274 |
| MsG0380017180.01.T01 | AT1G44110 | 44.061 | 261 | 132 | 3 | 79 | 327 | 181 | 439 | 6.81e-65 | 213 |
| MsG0380017180.01.T01 | AT5G11300 | 43.590 | 273 | 128 | 4 | 67 | 327 | 159 | 417 | 2.67e-63 | 209 |
| MsG0380017180.01.T01 | AT1G80370 | 44.177 | 249 | 123 | 3 | 92 | 327 | 197 | 442 | 3.05e-63 | 209 |
| MsG0380017180.01.T01 | AT1G15570 | 44.531 | 256 | 125 | 3 | 92 | 332 | 188 | 441 | 4.30e-63 | 208 |
| MsG0380017180.01.T01 | AT5G25380 | 40.840 | 262 | 141 | 2 | 79 | 328 | 160 | 419 | 7.92e-59 | 196 |
| MsG0380017180.01.T01 | AT5G25380 | 40.613 | 261 | 141 | 2 | 79 | 327 | 160 | 418 | 3.28e-58 | 195 |
| MsG0380017180.01.T01 | AT5G25380 | 40.613 | 261 | 141 | 2 | 79 | 327 | 160 | 418 | 3.28e-58 | 195 |
| MsG0380017180.01.T01 | AT1G77390 | 40.511 | 274 | 137 | 4 | 66 | 327 | 164 | 423 | 3.43e-58 | 195 |
| MsG0380017180.01.T01 | AT5G25380 | 40.613 | 261 | 141 | 2 | 79 | 327 | 166 | 424 | 4.97e-58 | 195 |
| MsG0380017180.01.T01 | AT5G11300 | 48.585 | 212 | 95 | 2 | 67 | 278 | 159 | 356 | 8.36e-58 | 194 |
| MsG0380017180.01.T01 | AT5G06150 | 32.759 | 290 | 172 | 7 | 71 | 346 | 160 | 440 | 4.19e-40 | 147 |
| MsG0380017180.01.T01 | AT2G26760 | 32.423 | 293 | 164 | 5 | 43 | 323 | 95 | 365 | 1.65e-39 | 145 |
| MsG0380017180.01.T01 | AT3G11520 | 35.827 | 254 | 143 | 5 | 83 | 325 | 150 | 394 | 1.88e-39 | 145 |
| MsG0380017180.01.T01 | AT1G47210 | 42.328 | 189 | 93 | 3 | 3 | 182 | 11 | 192 | 2.80e-39 | 139 |
| MsG0380017180.01.T01 | AT3G11520 | 37.607 | 234 | 126 | 5 | 83 | 305 | 150 | 374 | 4.12e-38 | 141 |
| MsG0380017180.01.T01 | AT4G37490 | 34.387 | 253 | 140 | 7 | 92 | 327 | 165 | 408 | 1.24e-37 | 140 |
| MsG0380017180.01.T01 | AT1G76310 | 32.234 | 273 | 165 | 5 | 67 | 327 | 152 | 416 | 8.61e-36 | 135 |
| MsG0380017180.01.T01 | AT1G16330 | 29.520 | 271 | 159 | 4 | 64 | 323 | 380 | 629 | 1.22e-35 | 138 |
| MsG0380017180.01.T01 | AT1G20610 | 32.794 | 247 | 147 | 5 | 92 | 327 | 177 | 415 | 5.24e-35 | 133 |
| MsG0380017180.01.T01 | AT1G76310 | 35.211 | 213 | 129 | 4 | 67 | 278 | 152 | 356 | 9.52e-34 | 129 |
| MsG0380017180.01.T01 | AT4G35620 | 42.328 | 189 | 97 | 4 | 92 | 278 | 172 | 350 | 2.22e-31 | 122 |
| MsG0380017180.01.T01 | AT4G35620 | 36.948 | 249 | 134 | 6 | 92 | 327 | 172 | 410 | 2.69e-31 | 123 |
| MsG0380017180.01.T01 | AT2G17620 | 37.652 | 247 | 135 | 5 | 92 | 327 | 171 | 409 | 2.78e-31 | 123 |
| MsG0380017180.01.T01 | AT1G76310 | 29.568 | 301 | 164 | 6 | 67 | 327 | 152 | 444 | 2.13e-30 | 121 |
| MsG0380017180.01.T01 | AT5G06150 | 40.120 | 167 | 95 | 4 | 71 | 236 | 160 | 322 | 1.79e-29 | 116 |
| MsG0380017180.01.T01 | AT1G76310 | 35.556 | 180 | 112 | 3 | 66 | 244 | 151 | 327 | 3.69e-28 | 113 |
| MsG0380017180.01.T01 | AT1G20590 | 39.837 | 123 | 69 | 1 | 156 | 278 | 66 | 183 | 1.29e-21 | 93.6 |
| MsG0380017180.01.T01 | AT1G34460 | 30.539 | 167 | 91 | 5 | 71 | 236 | 236 | 378 | 9.30e-13 | 69.7 |
| MsG0380017180.01.T01 | AT1G34460 | 30.539 | 167 | 91 | 5 | 71 | 236 | 250 | 392 | 1.15e-12 | 69.3 |
| MsG0380017180.01.T01 | AT1G34460 | 30.539 | 167 | 91 | 5 | 71 | 236 | 250 | 392 | 1.15e-12 | 69.3 |
| MsG0380017180.01.T01 | AT1G34460 | 30.539 | 167 | 91 | 5 | 71 | 236 | 250 | 392 | 1.15e-12 | 69.3 |
| MsG0380017180.01.T01 | AT1G34460 | 30.539 | 167 | 91 | 5 | 71 | 236 | 250 | 392 | 1.15e-12 | 69.3 |
| MsG0380017180.01.T01 | AT1G34460 | 30.539 | 167 | 91 | 5 | 71 | 236 | 250 | 392 | 1.24e-12 | 69.3 |
| MsG0380017180.01.T01 | AT1G34460 | 30.539 | 167 | 91 | 5 | 71 | 236 | 250 | 392 | 1.34e-12 | 69.3 |
| MsG0380017180.01.T01 | AT1G34460 | 30.539 | 167 | 91 | 5 | 71 | 236 | 247 | 389 | 1.49e-12 | 69.3 |
| MsG0380017180.01.T01 | AT1G34460 | 30.539 | 167 | 91 | 5 | 71 | 236 | 247 | 389 | 1.49e-12 | 69.3 |
Find 84 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATAATTATTTCTTATTAT+TGG | 0.147905 | 3:-93046237 | MsG0380017180.01.T01:CDS |
| ATCACGTTTGGCATTGATTT+TGG | 0.171036 | 3:+93048045 | None:intergenic |
| AGGAGAAAGTGATGAAAATT+AGG | 0.186483 | 3:+93048333 | None:intergenic |
| TAAAACAATCCTCTGTCTTT+TGG | 0.193245 | 3:+93048207 | None:intergenic |
| TTAAGAAATGTTATGACATT+AGG | 0.245490 | 3:+93046886 | None:intergenic |
| ATGAACCGGCTTATTCAAAT+TGG | 0.248642 | 3:+93048069 | None:intergenic |
| TCCCTTTCAGGAGGTTTATT+GGG | 0.251091 | 3:-93046771 | MsG0380017180.01.T01:intron |
| CATACGTGTTATCAGTAATT+TGG | 0.257271 | 3:+93047086 | None:intergenic |
| GGTTGCCCATTTCAAAGTTT+AGG | 0.298700 | 3:+93046908 | None:intergenic |
| TAAGAAATGTTATGACATTA+GGG | 0.300153 | 3:+93046887 | None:intergenic |
| CAGATATTCAAACTGCAAAT+TGG | 0.300324 | 3:+93046634 | None:intergenic |
| GTTGCCCATTTCAAAGTTTA+GGG | 0.302240 | 3:+93046909 | None:intergenic |
| TAAGTCCCTAAACTTTGAAA+TGG | 0.303906 | 3:-93046914 | MsG0380017180.01.T01:CDS |
| TTCCCTTTCAGGAGGTTTAT+TGG | 0.306403 | 3:-93046772 | MsG0380017180.01.T01:intron |
| TCTTGCTGACTTAAGCTTGT+TGG | 0.319462 | 3:-93046603 | MsG0380017180.01.T01:CDS |
| GTGGCTGAATTCTTGAGGTT+AGG | 0.321249 | 3:+93048112 | None:intergenic |
| TGGCTGAATTCTTGAGGTTA+GGG | 0.348228 | 3:+93048113 | None:intergenic |
| CTTATTCAAATTGGAATCAA+TGG | 0.369939 | 3:+93048078 | None:intergenic |
| GACTTGTGGTGGTTGTTGAT+TGG | 0.372479 | 3:+93048237 | None:intergenic |
| ATAGGATGTTTACCTCTTCC+AGG | 0.372716 | 3:+93047062 | None:intergenic |
| AGTGATGAAAATTAGGGTTT+GGG | 0.373506 | 3:+93048340 | None:intergenic |
| ACTGACAGATGAAGCGTCTC+TGG | 0.379014 | 3:+93047735 | None:intergenic |
| TGAGAGGGACATTGGTTGAT+TGG | 0.379637 | 3:-93047791 | MsG0380017180.01.T01:CDS |
| GGAGAAAGTGATGAAAATTA+GGG | 0.379990 | 3:+93048334 | None:intergenic |
| TCCGTCCCTGTGTGAATGCT+TGG | 0.381462 | 3:-93046401 | MsG0380017180.01.T01:CDS |
| CTCCATTGTGCGAAGATAAT+CGG | 0.397103 | 3:+93047985 | None:intergenic |
| GAAAATTAGGGTTTGGGAAT+GGG | 0.397977 | 3:+93048346 | None:intergenic |
| AATCTGTTGATTATCACGTT+TGG | 0.400606 | 3:+93048033 | None:intergenic |
| AAGTGATGAAAATTAGGGTT+TGG | 0.403198 | 3:+93048339 | None:intergenic |
| TGGTTGTTGATTGGTGTTGT+TGG | 0.411534 | 3:+93048246 | None:intergenic |
| TGGCAGAAATCCACTGCCTT+CGG | 0.447465 | 3:+93047106 | None:intergenic |
| TTTGTCACGAACAGCTTTGA+AGG | 0.454235 | 3:+93046306 | None:intergenic |
| AAGTAATGATTCGGTATCTC+TGG | 0.454323 | 3:+93046150 | None:intergenic |
| TCTTCTTCAAAGTAATGATT+CGG | 0.456454 | 3:+93046141 | None:intergenic |
| TGAAAATTAGGGTTTGGGAA+TGG | 0.458129 | 3:+93048345 | None:intergenic |
| AAGTCCCTAAACTTTGAAAT+GGG | 0.462848 | 3:-93046913 | MsG0380017180.01.T01:CDS |
| GCCATCTGTTGTCGCTGCAT+CGG | 0.466961 | 3:-93046558 | MsG0380017180.01.T01:intron |
| TGCTGACAGGTTCAATAGAT+AGG | 0.467250 | 3:+93047694 | None:intergenic |
| ATTGGTTGATTGGTTAGTTG+AGG | 0.479448 | 3:-93047781 | MsG0380017180.01.T01:CDS |
| GTTGTTGGCTCTCTTCTTTG+AGG | 0.481908 | 3:+93048261 | None:intergenic |
| TGATTCCAATTTGAATAAGC+CGG | 0.489108 | 3:-93048074 | MsG0380017180.01.T01:CDS |
| AAGTGTTGCTCTGAAAGAAT+AGG | 0.489336 | 3:+93048313 | None:intergenic |
| GTATCTCTGGCGATGAAGGC+AGG | 0.491666 | 3:+93046163 | None:intergenic |
| TTCGGTATCTCTGGCGATGA+AGG | 0.497141 | 3:+93046159 | None:intergenic |
| CCGTCCCTGTGTGAATGCTT+GGG | 0.501028 | 3:-93046400 | MsG0380017180.01.T01:CDS |
| ATGATTTGTATATGTCAAGA+AGG | 0.502659 | 3:-93046336 | MsG0380017180.01.T01:CDS |
| AGATCTAAGCTTCAGCTGCT+TGG | 0.517791 | 3:-93047672 | MsG0380017180.01.T01:CDS |
| CTTCACTACACTCTGAAAGA+TGG | 0.519308 | 3:-93048293 | MsG0380017180.01.T01:exon |
| TTGTATATGTCAAGAAGGGC+AGG | 0.519915 | 3:-93046331 | MsG0380017180.01.T01:CDS |
| AATTGGAATCAATGGAAGGA+AGG | 0.527057 | 3:+93048086 | None:intergenic |
| TTCAAATTGGAATCAATGGA+AGG | 0.530972 | 3:+93048082 | None:intergenic |
| ATCAAACATGAGAGGGACAT+TGG | 0.531177 | 3:-93047799 | MsG0380017180.01.T01:CDS |
| CTACATTGGAGTTTCTGAGT+GGG | 0.536398 | 3:+93048142 | None:intergenic |
| AATCACCTCACCGAAGGCAG+TGG | 0.543643 | 3:-93047116 | MsG0380017180.01.T01:CDS |
| TCGGAGATATCAGATACATA+AGG | 0.545360 | 3:+93048004 | None:intergenic |
| ATTGGAATCAATGGAAGGAA+GGG | 0.545453 | 3:+93048087 | None:intergenic |
| ACCGATGCAGCGACAACAGA+TGG | 0.555704 | 3:+93046557 | None:intergenic |
| TCTGGAACAGTTAAAATGTG+TGG | 0.557657 | 3:-93046190 | MsG0380017180.01.T01:CDS |
| CCACTCAGAAACTCCAATGT+AGG | 0.559110 | 3:-93048141 | MsG0380017180.01.T01:CDS |
| CACAGGGACGGAGTCTGCAA+TGG | 0.570216 | 3:+93046412 | None:intergenic |
| TGAAGCTTAGATCTGCTGAC+AGG | 0.573991 | 3:+93047681 | None:intergenic |
| TCAACAACCACCACAAGTCA+TGG | 0.576674 | 3:-93048233 | MsG0380017180.01.T01:CDS |
| CTCCGATTATCTTCGCACAA+TGG | 0.576963 | 3:-93047987 | MsG0380017180.01.T01:CDS |
| TACTGATAACACGTATGACC+TGG | 0.578166 | 3:-93047080 | MsG0380017180.01.T01:CDS |
| ATCAATGGAAGGAAGGGATG+TGG | 0.590672 | 3:+93048093 | None:intergenic |
| TTGGGAACCATGACTTGTGG+TGG | 0.593041 | 3:+93048226 | None:intergenic |
| CCTACATTGGAGTTTCTGAG+TGG | 0.595793 | 3:+93048141 | None:intergenic |
| TGATTTGTATATGTCAAGAA+GGG | 0.596859 | 3:-93046335 | MsG0380017180.01.T01:CDS |
| TTCTCAAGATAACCAACCAT+TGG | 0.599787 | 3:+93047840 | None:intergenic |
| GGGATGTGGCTGAATTCTTG+AGG | 0.605311 | 3:+93048107 | None:intergenic |
| CGATTATCTTCGCACAATGG+AGG | 0.617827 | 3:-93047984 | MsG0380017180.01.T01:intron |
| TATCTTGAGAATGTTCAAAG+AGG | 0.624395 | 3:-93047828 | MsG0380017180.01.T01:CDS |
| GCATTACATCAAACATGAGA+GGG | 0.627034 | 3:-93047806 | MsG0380017180.01.T01:CDS |
| GGCATTACATCAAACATGAG+AGG | 0.629142 | 3:-93047807 | MsG0380017180.01.T01:CDS |
| GATTGCTTGTGAGAATCGAA+AGG | 0.629577 | 3:-93046749 | MsG0380017180.01.T01:intron |
| TGAAGAAATCACCTCACCGA+AGG | 0.631915 | 3:-93047122 | MsG0380017180.01.T01:CDS |
| CCCAAGCATTCACACAGGGA+CGG | 0.632875 | 3:+93046400 | None:intergenic |
| TAACACGTATGACCTGGAAG+AGG | 0.660847 | 3:-93047074 | MsG0380017180.01.T01:intron |
| TGACAAATACAAGCAGAACA+AGG | 0.662422 | 3:-93046290 | MsG0380017180.01.T01:CDS |
| GAAATCCACTGCCTTCGGTG+AGG | 0.689103 | 3:+93047111 | None:intergenic |
| GTAACCCAAGCATTCACACA+GGG | 0.699025 | 3:+93046396 | None:intergenic |
| TGTAACCCAAGCATTCACAC+AGG | 0.705344 | 3:+93046395 | None:intergenic |
| TCATGGTTCCCAAAAGACAG+AGG | 0.710281 | 3:-93048216 | MsG0380017180.01.T01:CDS |
| TGAATGCTTGGGTTACACGT+CGG | 0.724505 | 3:-93046389 | MsG0380017180.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAACAATTAATCAAGAAG+AGG | + | Chr3:93046541-93046560 | None:intergenic | 20.0% |
| !! | AGAGATTAATGAATTTGATA+GGG | - | Chr3:93047199-93047218 | MsG0380017180.01.T01:intron | 20.0% |
| !! | ATAACAATTAATCAAGAAGA+GGG | + | Chr3:93046540-93046559 | None:intergenic | 20.0% |
| !! | ATCAAATTCATTAATCTCTA+AGG | + | Chr3:93047198-93047217 | None:intergenic | 20.0% |
| !! | TAAGAAATGTTATGACATTA+GGG | + | Chr3:93047610-93047629 | None:intergenic | 20.0% |
| !! | TAGAGATTAATGAATTTGAT+AGG | - | Chr3:93047198-93047217 | MsG0380017180.01.T01:intron | 20.0% |
| !! | TCAAATTCATTAATCTCTAA+GGG | + | Chr3:93047197-93047216 | None:intergenic | 20.0% |
| !! | TTAAGAAATGTTATGACATT+AGG | + | Chr3:93047611-93047630 | None:intergenic | 20.0% |
| !!! | TATTTTTGTATAAGCTATCT+TGG | - | Chr3:93047045-93047064 | MsG0380017180.01.T01:intron | 20.0% |
| !!! | TGTTATTTTTACAAAGATCT+AGG | - | Chr3:93046913-93046932 | MsG0380017180.01.T01:CDS | 20.0% |
| ! | ACAGATGATAGAACATTAAT+GGG | - | Chr3:93047227-93047246 | MsG0380017180.01.T01:intron | 25.0% |
| ! | ACTTTCTGCATATTTAAAAG+TGG | + | Chr3:93047351-93047370 | None:intergenic | 25.0% |
| ! | CTTATTCAAATTGGAATCAA+TGG | + | Chr3:93046419-93046438 | None:intergenic | 25.0% |
| ! | GTCATAACATTTCTTAAGTA+AGG | - | Chr3:93047614-93047633 | MsG0380017180.01.T01:intron | 25.0% |
| ! | TAACAACAAATATTTACCCA+AGG | + | Chr3:93048003-93048022 | None:intergenic | 25.0% |
| !! | ATGATTTGTATATGTCAAGA+AGG | - | Chr3:93048158-93048177 | MsG0380017180.01.T01:CDS | 25.0% |
| !! | TGATTTGTATATGTCAAGAA+GGG | - | Chr3:93048159-93048178 | MsG0380017180.01.T01:CDS | 25.0% |
| !!! | ACATTGTTCACATGTTATTT+TGG | + | Chr3:93047090-93047109 | None:intergenic | 25.0% |
| !!! | CATTGTTCACATGTTATTTT+GGG | + | Chr3:93047089-93047108 | None:intergenic | 25.0% |
| !!! | TGGGTAAATATTTGTTGTTA+TGG | - | Chr3:93048003-93048022 | MsG0380017180.01.T01:CDS | 25.0% |
| AAAAACAGGAAGATTGAGAT+CGG | + | Chr3:93046323-93046342 | None:intergenic | 30.0% | |
| AAGTGATGAAAATTAGGGTT+TGG | + | Chr3:93046158-93046177 | None:intergenic | 30.0% | |
| ACAATTAGTAAACACAACAC+AGG | + | Chr3:93047817-93047836 | None:intergenic | 30.0% | |
| AGGAGAAAGTGATGAAAATT+AGG | + | Chr3:93046164-93046183 | None:intergenic | 30.0% | |
| AGTGATGAAAATTAGGGTTT+GGG | + | Chr3:93046157-93046176 | None:intergenic | 30.0% | |
| ATAACAGTTGCACATAAACA+TGG | + | Chr3:93047700-93047719 | None:intergenic | 30.0% | |
| ATAAGCTATTTACCCAAACA+AGG | + | Chr3:93046939-93046958 | None:intergenic | 30.0% | |
| CAGATATTCAAACTGCAAAT+TGG | + | Chr3:93047863-93047882 | None:intergenic | 30.0% | |
| CAGATGATAGAACATTAATG+GGG | - | Chr3:93047228-93047247 | MsG0380017180.01.T01:intron | 30.0% | |
| CATACGTGTTATCAGTAATT+TGG | + | Chr3:93047411-93047430 | None:intergenic | 30.0% | |
| GACAGATGATAGAACATTAA+TGG | - | Chr3:93047226-93047245 | MsG0380017180.01.T01:intron | 30.0% | |
| GGAGAAAGTGATGAAAATTA+GGG | + | Chr3:93046163-93046182 | None:intergenic | 30.0% | |
| TATCTTGAGAATGTTCAAAG+AGG | - | Chr3:93046666-93046685 | MsG0380017180.01.T01:intron | 30.0% | |
| TGATTCCAATTTGAATAAGC+CGG | - | Chr3:93046420-93046439 | MsG0380017180.01.T01:intron | 30.0% | |
| TTCAAATTGGAATCAATGGA+AGG | + | Chr3:93046415-93046434 | None:intergenic | 30.0% | |
| TTCTTGCCAGATTTATTATC+CGG | - | Chr3:93047965-93047984 | MsG0380017180.01.T01:intron | 30.0% | |
| ! | AAAACAATCCTCTGTCTTTT+GGG | + | Chr3:93046289-93046308 | None:intergenic | 30.0% |
| ! | AAAAGACAGAGGATTGTTTT+AGG | - | Chr3:93046289-93046308 | MsG0380017180.01.T01:CDS | 30.0% |
| ! | AATCTGTTGATTATCACGTT+TGG | + | Chr3:93046464-93046483 | None:intergenic | 30.0% |
| ! | TAAAACAATCCTCTGTCTTT+TGG | + | Chr3:93046290-93046309 | None:intergenic | 30.0% |
| ! | TAAGTCCCTAAACTTTGAAA+TGG | - | Chr3:93047580-93047599 | MsG0380017180.01.T01:intron | 30.0% |
| ! | TTTTGTATAAGCTATCTTGG+AGG | - | Chr3:93047048-93047067 | MsG0380017180.01.T01:intron | 30.0% |
| !! | AAGTCCCTAAACTTTGAAAT+GGG | - | Chr3:93047581-93047600 | MsG0380017180.01.T01:intron | 30.0% |
| !! | GCTTCCATTTTTAATACCTA+CGG | + | Chr3:93047551-93047570 | None:intergenic | 30.0% |
| !!! | ATTGACTTGAAATCGTTTTC+TGG | - | Chr3:93048286-93048305 | MsG0380017180.01.T01:exon | 30.0% |
| AAAAAGAGAAGACCAATGGT+TGG | - | Chr3:93046642-93046661 | MsG0380017180.01.T01:intron | 35.0% | |
| AACTGTTATGTTTCCCTTTC+AGG | - | Chr3:93047711-93047730 | MsG0380017180.01.T01:CDS | 35.0% | |
| AATTGGAATCAATGGAAGGA+AGG | + | Chr3:93046411-93046430 | None:intergenic | 35.0% | |
| ATTGGAATCAATGGAAGGAA+GGG | + | Chr3:93046410-93046429 | None:intergenic | 35.0% | |
| CATGTGAACAATGTCATAAG+TGG | - | Chr3:93047096-93047115 | MsG0380017180.01.T01:CDS | 35.0% | |
| CCAATTACTTCATTTCTGCA+AGG | + | Chr3:93047672-93047691 | None:intergenic | 35.0% | |
| CCTTGCAGAAATGAAGTAAT+TGG | - | Chr3:93047669-93047688 | MsG0380017180.01.T01:CDS | 35.0% | |
| GAAAATTAGGGTTTGGGAAT+GGG | + | Chr3:93046151-93046170 | None:intergenic | 35.0% | |
| GCATTACATCAAACATGAGA+GGG | - | Chr3:93046688-93046707 | MsG0380017180.01.T01:intron | 35.0% | |
| GCTACCGTAGGTATTAAAAA+TGG | - | Chr3:93047544-93047563 | MsG0380017180.01.T01:intron | 35.0% | |
| GTTGCCCATTTCAAAGTTTA+GGG | + | Chr3:93047588-93047607 | None:intergenic | 35.0% | |
| TCAAGAGCAATGACATGAAT+AGG | + | Chr3:93047453-93047472 | None:intergenic | 35.0% | |
| TCGGAGATATCAGATACATA+AGG | + | Chr3:93046493-93046512 | None:intergenic | 35.0% | |
| TGAAAATTAGGGTTTGGGAA+TGG | + | Chr3:93046152-93046171 | None:intergenic | 35.0% | |
| TGACAAATACAAGCAGAACA+AGG | - | Chr3:93048204-93048223 | MsG0380017180.01.T01:CDS | 35.0% | |
| TTCTCAAGATAACCAACCAT+TGG | + | Chr3:93046657-93046676 | None:intergenic | 35.0% | |
| ! | ATGAACCGGCTTATTCAAAT+TGG | + | Chr3:93046428-93046447 | None:intergenic | 35.0% |
| ! | ATTGGTTGATTGGTTAGTTG+AGG | - | Chr3:93046713-93046732 | MsG0380017180.01.T01:intron | 35.0% |
| ! | TCTGGAACAGTTAAAATGTG+TGG | - | Chr3:93048304-93048323 | MsG0380017180.01.T01:five_prime_UTR | 35.0% |
| ! | TTTTTAATACCTACGGTAGC+AGG | + | Chr3:93047544-93047563 | None:intergenic | 35.0% |
| !! | AAGTAATGATTCGGTATCTC+TGG | + | Chr3:93048347-93048366 | None:intergenic | 35.0% |
| !! | AAGTGTTGCTCTGAAAGAAT+AGG | + | Chr3:93046184-93046203 | None:intergenic | 35.0% |
| !! | GTGGGTTGATAATCAAAAAC+AGG | + | Chr3:93046337-93046356 | None:intergenic | 35.0% |
| !!! | ATCACGTTTGGCATTGATTT+TGG | + | Chr3:93046452-93046471 | None:intergenic | 35.0% |
| !!! | GCATTGATTTTGGTATGAAC+CGG | + | Chr3:93046442-93046461 | None:intergenic | 35.0% |
| ATAGGATGTTTACCTCTTCC+AGG | + | Chr3:93047435-93047454 | None:intergenic | 40.0% | |
| ATCAAACATGAGAGGGACAT+TGG | - | Chr3:93046695-93046714 | MsG0380017180.01.T01:intron | 40.0% | |
| ATCCCAATAAACCTCCTGAA+AGG | + | Chr3:93047728-93047747 | None:intergenic | 40.0% | |
| CTACATTGGAGTTTCTGAGT+GGG | + | Chr3:93046355-93046374 | None:intergenic | 40.0% | |
| CTCCATTGTGCGAAGATAAT+CGG | + | Chr3:93046512-93046531 | None:intergenic | 40.0% | |
| GATTGCTTGTGAGAATCGAA+AGG | - | Chr3:93047745-93047764 | MsG0380017180.01.T01:CDS | 40.0% | |
| GCAGAAAAAGAGAAGACCAA+TGG | - | Chr3:93046638-93046657 | MsG0380017180.01.T01:CDS | 40.0% | |
| GGCATTACATCAAACATGAG+AGG | - | Chr3:93046687-93046706 | MsG0380017180.01.T01:intron | 40.0% | |
| GGTTGCCCATTTCAAAGTTT+AGG | + | Chr3:93047589-93047608 | None:intergenic | 40.0% | |
| TACTGATAACACGTATGACC+TGG | - | Chr3:93047414-93047433 | MsG0380017180.01.T01:intron | 40.0% | |
| TCCCAATAAACCTCCTGAAA+GGG | + | Chr3:93047727-93047746 | None:intergenic | 40.0% | |
| TCCCTTTCAGGAGGTTTATT+GGG | - | Chr3:93047723-93047742 | MsG0380017180.01.T01:CDS | 40.0% | |
| TGCTGACAGGTTCAATAGAT+AGG | + | Chr3:93046803-93046822 | None:intergenic | 40.0% | |
| TGGCTGAATTCTTGAGGTTA+GGG | + | Chr3:93046384-93046403 | None:intergenic | 40.0% | |
| TGTTATGTTTCCCTTTCAGG+AGG | - | Chr3:93047714-93047733 | MsG0380017180.01.T01:CDS | 40.0% | |
| TTCCCTTTCAGGAGGTTTAT+TGG | - | Chr3:93047722-93047741 | MsG0380017180.01.T01:CDS | 40.0% | |
| TTGTATATGTCAAGAAGGGC+AGG | - | Chr3:93048163-93048182 | MsG0380017180.01.T01:CDS | 40.0% | |
| ! | CTCTAAGGGCATGTTTGTAT+TGG | + | Chr3:93047183-93047202 | None:intergenic | 40.0% |
| ! | CTTCACTACACTCTGAAAGA+TGG | - | Chr3:93046201-93046220 | MsG0380017180.01.T01:CDS | 40.0% |
| ! | GGTTAGGGTTTTTCCTACAT+TGG | + | Chr3:93046369-93046388 | None:intergenic | 40.0% |
| ! | TTTGTCACGAACAGCTTTGA+AGG | + | Chr3:93048191-93048210 | None:intergenic | 40.0% |
| !! | ACAAAGATCTAGGCCTTGTT+TGG | - | Chr3:93046923-93046942 | MsG0380017180.01.T01:CDS | 40.0% |
| !! | CAAAGATCTAGGCCTTGTTT+GGG | - | Chr3:93046924-93046943 | MsG0380017180.01.T01:CDS | 40.0% |
| !! | TCTTGCTGACTTAAGCTTGT+TGG | - | Chr3:93047891-93047910 | MsG0380017180.01.T01:intron | 40.0% |
| !! | TGGTTGTTGATTGGTGTTGT+TGG | + | Chr3:93046251-93046270 | None:intergenic | 40.0% |
| AAGCCTCATCACACTAAGTG+GGG | + | Chr3:93047275-93047294 | None:intergenic | 45.0% | |
| AGATCTAAGCTTCAGCTGCT+TGG | - | Chr3:93046822-93046841 | MsG0380017180.01.T01:intron | 45.0% | |
| ATCAATGGAAGGAAGGGATG+TGG | + | Chr3:93046404-93046423 | None:intergenic | 45.0% | |
| CAAGCCTCATCACACTAAGT+GGG | + | Chr3:93047276-93047295 | None:intergenic | 45.0% | |
| CCACTCAGAAACTCCAATGT+AGG | - | Chr3:93046353-93046372 | MsG0380017180.01.T01:CDS | 45.0% | |
| CCTACATTGGAGTTTCTGAG+TGG | + | Chr3:93046356-93046375 | None:intergenic | 45.0% | |
| CGATTATCTTCGCACAATGG+AGG | - | Chr3:93046510-93046529 | MsG0380017180.01.T01:intron | 45.0% | |
| CTCCGATTATCTTCGCACAA+TGG | - | Chr3:93046507-93046526 | MsG0380017180.01.T01:intron | 45.0% | |
| CTTAGTGTGATGAGGCTTGA+TGG | - | Chr3:93047277-93047296 | MsG0380017180.01.T01:intron | 45.0% | |
| GACTTGTGGTGGTTGTTGAT+TGG | + | Chr3:93046260-93046279 | None:intergenic | 45.0% | |
| GTAACCCAAGCATTCACACA+GGG | + | Chr3:93048101-93048120 | None:intergenic | 45.0% | |
| GTGGCTGAATTCTTGAGGTT+AGG | + | Chr3:93046385-93046404 | None:intergenic | 45.0% | |
| TAACACGTATGACCTGGAAG+AGG | - | Chr3:93047420-93047439 | MsG0380017180.01.T01:intron | 45.0% | |
| TCAACAACCACCACAAGTCA+TGG | - | Chr3:93046261-93046280 | MsG0380017180.01.T01:CDS | 45.0% | |
| TCAAGCCTCATCACACTAAG+TGG | + | Chr3:93047277-93047296 | None:intergenic | 45.0% | |
| TCATGGTTCCCAAAAGACAG+AGG | - | Chr3:93046278-93046297 | MsG0380017180.01.T01:CDS | 45.0% | |
| TCCAGGCCGGATAATAAATC+TGG | + | Chr3:93047974-93047993 | None:intergenic | 45.0% | |
| TGAAGAAATCACCTCACCGA+AGG | - | Chr3:93047372-93047391 | MsG0380017180.01.T01:intron | 45.0% | |
| TGAAGCTTAGATCTGCTGAC+AGG | + | Chr3:93046816-93046835 | None:intergenic | 45.0% | |
| TGAATGCTTGGGTTACACGT+CGG | - | Chr3:93048105-93048124 | MsG0380017180.01.T01:CDS | 45.0% | |
| TGTAACCCAAGCATTCACAC+AGG | + | Chr3:93048102-93048121 | None:intergenic | 45.0% | |
| TTTACCCAAGGATGTACTCC+AGG | + | Chr3:93047991-93048010 | None:intergenic | 45.0% | |
| ! | TGAGAGGGACATTGGTTGAT+TGG | - | Chr3:93046703-93046722 | MsG0380017180.01.T01:intron | 45.0% |
| !! | CTTTTGGGAACCATGACTTG+TGG | + | Chr3:93046274-93046293 | None:intergenic | 45.0% |
| !! | GTTGTTGGCTCTCTTCTTTG+AGG | + | Chr3:93046236-93046255 | None:intergenic | 45.0% |
| !!! | TTATAATTATTTCTTATTAT+TGG | - | Chr3:93048257-93048276 | MsG0380017180.01.T01:CDS | 5.0% |
| !!! | TTATTTTATTTACAATTTTT+AGG | - | Chr3:93046582-93046601 | MsG0380017180.01.T01:CDS | 5.0% |
| ACTAAGTGGGGTCTGCTACA+TGG | + | Chr3:93047263-93047282 | None:intergenic | 50.0% | |
| AGACCCCACTTAGTGTGATG+AGG | - | Chr3:93047269-93047288 | MsG0380017180.01.T01:intron | 50.0% | |
| GCCAGATTTATTATCCGGCC+TGG | - | Chr3:93047970-93047989 | MsG0380017180.01.T01:intron | 50.0% | |
| GGGATGTGGCTGAATTCTTG+AGG | + | Chr3:93046390-93046409 | None:intergenic | 50.0% | |
| TGGCAGAAATCCACTGCCTT+CGG | + | Chr3:93047391-93047410 | None:intergenic | 50.0% | |
| TGTTGTCTTCCTGCTACCGT+AGG | - | Chr3:93047532-93047551 | MsG0380017180.01.T01:intron | 50.0% | |
| TTCGGTATCTCTGGCGATGA+AGG | + | Chr3:93048338-93048357 | None:intergenic | 50.0% | |
| ! | ACTGACAGATGAAGCGTCTC+TGG | + | Chr3:93046762-93046781 | None:intergenic | 50.0% |
| ! | TTGGGAACCATGACTTGTGG+TGG | + | Chr3:93046271-93046290 | None:intergenic | 50.0% |
| AATCACCTCACCGAAGGCAG+TGG | - | Chr3:93047378-93047397 | MsG0380017180.01.T01:intron | 55.0% | |
| ACCGATGCAGCGACAACAGA+TGG | + | Chr3:93047940-93047959 | None:intergenic | 55.0% | |
| CCCAAGCATTCACACAGGGA+CGG | + | Chr3:93048097-93048116 | None:intergenic | 55.0% | |
| CCGTCCCTGTGTGAATGCTT+GGG | - | Chr3:93048094-93048113 | MsG0380017180.01.T01:CDS | 55.0% | |
| GAAATCCACTGCCTTCGGTG+AGG | + | Chr3:93047386-93047405 | None:intergenic | 55.0% | |
| GCCATCTGTTGTCGCTGCAT+CGG | - | Chr3:93047936-93047955 | MsG0380017180.01.T01:intron | 55.0% | |
| GTATCTCTGGCGATGAAGGC+AGG | + | Chr3:93048334-93048353 | None:intergenic | 55.0% | |
| TCCGTCCCTGTGTGAATGCT+TGG | - | Chr3:93048093-93048112 | MsG0380017180.01.T01:CDS | 55.0% | |
| CACAGGGACGGAGTCTGCAA+TGG | + | Chr3:93048085-93048104 | None:intergenic | 60.0% | |
| CCCAAGGATGTACTCCAGGC+CGG | + | Chr3:93047987-93048006 | None:intergenic | 60.0% | |
| CCGGCCTGGAGTACATCCTT+GGG | - | Chr3:93047984-93048003 | MsG0380017180.01.T01:intron | 60.0% | |
| TCCGGCCTGGAGTACATCCT+TGG | - | Chr3:93047983-93048002 | MsG0380017180.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 93046147 | 93048369 | 93046147 | ID=MsG0380017180.01;Name=MsG0380017180.01 |
| Chr3 | mRNA | 93046147 | 93048369 | 93046147 | ID=MsG0380017180.01.T01;Parent=MsG0380017180.01;Name=MsG0380017180.01.T01;_AED=0.45;_eAED=0.49;_QI=73|0.83|0.71|1|1|1|7|0|374 |
| Chr3 | exon | 93046147 | 93046437 | 93046147 | ID=MsG0380017180.01.T01:exon:5368;Parent=MsG0380017180.01.T01 |
| Chr3 | exon | 93046559 | 93046660 | 93046559 | ID=MsG0380017180.01.T01:exon:5367;Parent=MsG0380017180.01.T01 |
| Chr3 | exon | 93046750 | 93046783 | 93046750 | ID=MsG0380017180.01.T01:exon:5366;Parent=MsG0380017180.01.T01 |
| Chr3 | exon | 93046886 | 93046962 | 93046886 | ID=MsG0380017180.01.T01:exon:5365;Parent=MsG0380017180.01.T01 |
| Chr3 | exon | 93047075 | 93047150 | 93047075 | ID=MsG0380017180.01.T01:exon:5364;Parent=MsG0380017180.01.T01 |
| Chr3 | exon | 93047648 | 93047880 | 93047648 | ID=MsG0380017180.01.T01:exon:5363;Parent=MsG0380017180.01.T01 |
| Chr3 | exon | 93047985 | 93048369 | 93047985 | ID=MsG0380017180.01.T01:exon:5362;Parent=MsG0380017180.01.T01 |
| Chr3 | five_prime_UTR | 93048297 | 93048369 | 93048297 | ID=MsG0380017180.01.T01:five_prime_utr;Parent=MsG0380017180.01.T01 |
| Chr3 | CDS | 93047985 | 93048296 | 93047985 | ID=MsG0380017180.01.T01:cds;Parent=MsG0380017180.01.T01 |
| Chr3 | CDS | 93047648 | 93047880 | 93047648 | ID=MsG0380017180.01.T01:cds;Parent=MsG0380017180.01.T01 |
| Chr3 | CDS | 93047075 | 93047150 | 93047075 | ID=MsG0380017180.01.T01:cds;Parent=MsG0380017180.01.T01 |
| Chr3 | CDS | 93046886 | 93046962 | 93046886 | ID=MsG0380017180.01.T01:cds;Parent=MsG0380017180.01.T01 |
| Chr3 | CDS | 93046750 | 93046783 | 93046750 | ID=MsG0380017180.01.T01:cds;Parent=MsG0380017180.01.T01 |
| Chr3 | CDS | 93046559 | 93046660 | 93046559 | ID=MsG0380017180.01.T01:cds;Parent=MsG0380017180.01.T01 |
| Chr3 | CDS | 93046147 | 93046437 | 93046147 | ID=MsG0380017180.01.T01:cds;Parent=MsG0380017180.01.T01 |
| Gene Sequence |
| Protein sequence |
