AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018301.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018301.01.T01 MTR_4g009620 95.365 561 25 1 1 560 8 568 0.0 1050
MsG0480018301.01.T01 MTR_4g009590 74.823 564 136 6 1 560 8 569 0.0 842
MsG0480018301.01.T01 MTR_4g009340 74.592 551 136 4 1 548 8 557 0.0 798
MsG0480018301.01.T01 MTR_7g017620 60.878 547 202 8 1 545 8 544 0.0 662
MsG0480018301.01.T01 MTR_2g041180 34.921 189 105 5 5 191 25 197 5.14e-21 96.7
MsG0480018301.01.T01 MTR_2g036320 34.254 181 105 4 13 191 46 214 4.74e-19 90.9
MsG0480018301.01.T01 MTR_5g086230 33.133 166 105 5 36 198 29 191 2.71e-17 80.9
MsG0480018301.01.T01 MTR_5g086340 33.831 201 114 9 364 557 257 445 4.77e-17 84.3
MsG0480018301.01.T01 MTR_5g086340 29.469 207 127 7 36 237 33 225 7.36e-15 77.4
MsG0480018301.01.T01 MTR_5g087580 30.688 189 123 5 364 550 38 220 1.20e-16 79.7
MsG0480018301.01.T01 MTR_5g016570 29.825 171 108 6 14 179 78 241 1.36e-15 80.1
MsG0480018301.01.T01 MTR_5g086260 31.217 189 111 8 370 550 137 314 3.10e-15 77.4
MsG0480018301.01.T01 MTR_8g005295 30.481 187 116 4 18 190 19 205 1.13e-14 77.0
MsG0480018301.01.T01 MTR_8g005295 28.846 156 110 1 380 535 348 502 2.26e-11 66.6
MsG0480018301.01.T01 MTR_7g060840 30.102 196 126 5 353 541 241 432 2.09e-14 75.9
MsG0480018301.01.T01 MTR_8g005235 34.783 161 88 7 35 190 27 175 4.05e-14 75.1
MsG0480018301.01.T01 MTR_6g011060 25.294 170 111 2 36 205 26 179 1.73e-13 73.2
MsG0480018301.01.T01 MTR_6g011060 27.528 178 122 2 368 541 244 418 3.24e-11 65.9
MsG0480018301.01.T01 MTR_7g011980 28.814 177 119 2 369 541 168 341 2.47e-13 72.0
MsG0480018301.01.T01 MTR_8g006525 30.808 198 117 7 35 223 28 214 7.67e-13 70.9
MsG0480018301.01.T01 MTR_8g005285 30.588 170 104 4 35 190 36 205 9.01e-13 71.2
MsG0480018301.01.T01 MTR_8g005285 30.556 144 96 2 392 535 349 488 7.35e-12 68.2
MsG0480018301.01.T01 MTR_6g010890 28.261 184 123 3 366 541 243 425 9.39e-13 70.9
MsG0480018301.01.T01 MTR_6g010920 25.641 156 100 3 36 191 26 165 3.82e-12 68.9
MsG0480018301.01.T01 MTR_8g005325 32.298 161 92 6 35 190 56 204 4.08e-12 68.9
MsG0480018301.01.T01 MTR_8g005325 29.104 134 94 1 400 533 330 462 2.41e-11 66.6
MsG0480018301.01.T01 MTR_6g009590 29.670 182 121 2 364 541 232 410 4.26e-12 68.6
MsG0480018301.01.T01 MTR_6g009590 26.875 160 93 4 36 191 26 165 6.19e-12 68.2
MsG0480018301.01.T01 MTR_2g035640 27.485 171 122 2 368 537 175 344 4.36e-12 68.2
MsG0480018301.01.T01 MTR_3g079390 29.480 173 121 1 370 541 277 449 4.62e-12 68.6
MsG0480018301.01.T01 MTR_7g060080 31.724 145 97 2 399 542 49 192 5.99e-12 65.5
MsG0480018301.01.T01 MTR_8g005225 28.834 163 112 4 379 541 297 455 8.09e-12 68.2
MsG0480018301.01.T01 MTR_6g011050 26.582 158 100 4 35 191 24 166 1.04e-11 67.4
MsG0480018301.01.T01 MTR_3g466740 25.604 207 132 5 14 212 11 203 1.37e-11 67.4
MsG0480018301.01.T01 MTR_6g009610 25.000 156 101 3 36 191 26 165 2.29e-11 66.2
MsG0480018301.01.T01 MTR_6g009610 28.652 178 120 2 368 541 236 410 4.49e-11 65.5
MsG0480018301.01.T01 MTR_0209s0060 32.075 159 92 7 35 188 29 176 2.36e-11 66.2
MsG0480018301.01.T01 MTR_0209s0030 32.075 159 92 7 35 188 29 176 2.36e-11 66.2
MsG0480018301.01.T01 MTR_6g009170 25.749 167 107 3 34 200 24 173 2.50e-11 66.2
MsG0480018301.01.T01 MTR_7g060310 31.250 144 91 3 402 541 348 487 2.92e-11 66.2
MsG0480018301.01.T01 MTR_7g059480 29.577 142 98 2 402 542 634 774 9.13e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018301.01.T01 AT3G02645 46.198 526 238 11 2 519 9 497 8.28e-151 444
MsG0480018301.01.T01 AT3G50180 32.039 206 129 5 14 217 155 351 1.16e-25 111
MsG0480018301.01.T01 AT3G50180 28.571 182 122 5 368 543 403 582 3.96e-11 66.2
MsG0480018301.01.T01 AT3G50120 33.333 207 126 6 14 217 80 277 1.27e-25 111
MsG0480018301.01.T01 AT3G50120 27.473 182 126 4 368 546 350 528 5.87e-11 65.5
MsG0480018301.01.T01 AT3G50170 30.841 214 136 7 6 217 84 287 2.95e-24 105
MsG0480018301.01.T01 AT3G50170 30.841 214 136 7 6 217 84 287 1.02e-23 105
MsG0480018301.01.T01 AT3G50170 26.111 180 131 2 368 546 358 536 1.49e-11 67.4
MsG0480018301.01.T01 AT3G50140 30.144 209 136 5 14 220 90 290 1.27e-22 100
MsG0480018301.01.T01 AT3G50150 29.469 207 135 6 14 217 67 265 1.33e-22 101
MsG0480018301.01.T01 AT3G50140 30.144 209 136 5 14 220 90 290 1.55e-22 101
MsG0480018301.01.T01 AT3G50140 25.373 201 144 3 347 542 333 532 1.52e-11 67.4
MsG0480018301.01.T01 AT3G50150 29.469 207 135 6 14 217 67 265 1.98e-22 101
MsG0480018301.01.T01 AT3G50150 29.808 208 129 7 351 546 304 506 8.77e-16 80.9
MsG0480018301.01.T01 AT3G50130 28.155 206 138 5 14 217 116 313 2.09e-22 101
MsG0480018301.01.T01 AT3G50160 29.808 208 127 7 13 218 81 271 1.30e-18 89.4
MsG0480018301.01.T01 AT3G50160 29.851 201 123 7 350 543 306 495 2.10e-13 73.2
MsG0480018301.01.T01 AT3G50190 29.787 188 123 5 14 199 73 253 3.60e-17 83.6
MsG0480018301.01.T01 AT3G50190 29.787 188 123 5 14 199 73 253 4.38e-17 83.6
MsG0480018301.01.T01 AT3G50190 29.787 188 123 5 14 199 73 253 4.38e-17 83.6
MsG0480018301.01.T01 AT3G50190 29.787 188 123 5 14 199 73 253 8.50e-17 84.0
MsG0480018301.01.T01 AT2G36430 26.641 259 153 7 7 248 11 249 4.12e-16 81.3
MsG0480018301.01.T01 AT3G47250 31.694 183 111 4 15 190 36 211 5.66e-16 81.3
MsG0480018301.01.T01 AT3G47250 31.694 183 111 4 15 190 36 211 5.66e-16 81.3
MsG0480018301.01.T01 AT3G47250 31.694 183 111 4 15 190 36 211 5.66e-16 81.3
MsG0480018301.01.T01 AT3G47200 30.189 265 155 11 28 284 39 281 6.96e-16 80.9
MsG0480018301.01.T01 AT3G47200 30.189 265 155 11 28 284 39 281 6.96e-16 80.9
MsG0480018301.01.T01 AT3G47210 33.742 163 100 3 28 190 86 240 1.03e-15 80.5
MsG0480018301.01.T01 AT5G11290 30.435 161 97 3 34 191 32 180 4.92e-15 77.8
MsG0480018301.01.T01 AT5G22550 28.889 225 140 9 27 245 36 246 1.47e-14 76.6
MsG0480018301.01.T01 AT5G22550 27.222 180 130 1 368 546 308 487 6.52e-13 71.6
MsG0480018301.01.T01 AT4G31980 26.286 175 114 3 35 206 293 455 3.66e-14 75.9
MsG0480018301.01.T01 AT4G31980 29.143 175 119 4 369 541 506 677 1.50e-11 67.8
MsG0480018301.01.T01 AT5G22550 27.222 180 130 1 368 546 259 438 6.45e-13 71.2
MsG0480018301.01.T01 AT5G22560 25.564 266 167 8 4 250 13 266 1.06e-12 70.9
MsG0480018301.01.T01 AT5G22560 25.967 181 131 3 368 546 335 514 4.18e-11 65.9
MsG0480018301.01.T01 AT5G22540 27.727 220 145 6 28 245 24 231 3.55e-12 68.9
MsG0480018301.01.T01 AT5G22540 26.404 178 130 1 370 546 258 435 4.07e-11 65.9
MsG0480018301.01.T01 AT3G44710 25.123 203 137 5 51 250 64 254 1.54e-11 67.4

Find 87 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCCTCAAACTCTTCTTCT+AGG 0.153796 4:+3117554 None:intergenic
CAACCTTTGATGAGAATCTT+TGG 0.179806 4:-3117597 MsG0480018301.01.T01:CDS
GCAAAGATTCTAAGAGAAAA+AGG 0.234685 4:-3116272 MsG0480018301.01.T01:CDS
AAGCTTTGGCACATTGAAAA+TGG 0.249135 4:+3117510 None:intergenic
TGTTGTGGGACATAAGAATT+TGG 0.249676 4:+3117472 None:intergenic
CAATGTGCCAAAGCTTCTTA+TGG 0.260296 4:-3117503 MsG0480018301.01.T01:CDS
CTTGATATGCTTCCATTTGT+AGG 0.267254 4:+3116470 None:intergenic
AGCATGCTACCACAAATTCT+TGG 0.287384 4:-3117296 MsG0480018301.01.T01:CDS
CAATTGGTCCCTACCATTAT+TGG 0.314543 4:-3117444 MsG0480018301.01.T01:CDS
ATTGTCAAGGGTGCCCTTCT+TGG 0.317888 4:-3116177 MsG0480018301.01.T01:CDS
TCATCTTCCCACAATTAGTT+TGG 0.323564 4:-3116417 MsG0480018301.01.T01:CDS
GAAGAGTTTGAGGAGGAAAA+TGG 0.326776 4:-3117547 MsG0480018301.01.T01:CDS
TGTTGATATTAATGTGTATA+AGG 0.328473 4:-3117009 MsG0480018301.01.T01:CDS
ATCTTTCTCAAAACAAATAA+TGG 0.347136 4:+3117076 None:intergenic
CACAAATTCTTGGATTTGAA+TGG 0.360720 4:-3117286 MsG0480018301.01.T01:CDS
TTTATGAAGTCTTATGTGTT+TGG 0.373276 4:-3116092 MsG0480018301.01.T01:CDS
ATACAATGAAGATCAAGATT+TGG 0.376198 4:-3116118 MsG0480018301.01.T01:CDS
TTTGCTCCAACTTCGTCAAT+TGG 0.377327 4:+3117326 None:intergenic
GCCTTTGCATGGAATCAAAA+AGG 0.377556 4:-3116729 MsG0480018301.01.T01:CDS
AACCTTTGATGAGAATCTTT+GGG 0.378384 4:-3117596 MsG0480018301.01.T01:CDS
TTAACATGGATGGAATCATT+AGG 0.382803 4:+3116800 None:intergenic
TAGAATCTTTGCATCGTTCT+CGG 0.385581 4:+3116283 None:intergenic
GTTGAACAACTTGTGATTGC+AGG 0.386181 4:-3116506 MsG0480018301.01.T01:CDS
GAGTTTAAAAGGTGTTCAAT+AGG 0.391781 4:+3116620 None:intergenic
CTCCTCAAACTCTTCTTCTA+GGG 0.397644 4:+3117555 None:intergenic
ATCAGTTGGATCGGGACCTT+TGG 0.401569 4:-3116348 MsG0480018301.01.T01:CDS
GTTAATTTCTTACCTACAAA+TGG 0.403126 4:-3116482 MsG0480018301.01.T01:CDS
AGAGTTCTTGACGCCAATAA+TGG 0.405296 4:+3117431 None:intergenic
CTTGCATGGCATAAAATTGA+AGG 0.415607 4:+3117212 None:intergenic
CTTTCTTGATTCTTCTTGCA+TGG 0.423017 4:+3117198 None:intergenic
AAGCAAAATTAATTTGTGTC+CGG 0.428332 4:+3115948 None:intergenic
ATATCCCTCAAAATTGCATT+AGG 0.430899 4:+3117121 None:intergenic
CACTCTAAGACTTGAATGTT+AGG 0.432592 4:+3116944 None:intergenic
AGTCTTATGTGTTTGGTTCA+TGG 0.433433 4:-3116085 MsG0480018301.01.T01:CDS
CATTCAAATCCAAGAATTTG+TGG 0.446883 4:+3117287 None:intergenic
GAAAACATAACCAACCTTCC+AGG 0.449083 4:-3116662 MsG0480018301.01.T01:CDS
TCACTAGCCATAAGAAGCTT+TGG 0.455256 4:+3117496 None:intergenic
ATACTCTTCAAACATCTTGA+AGG 0.456719 4:+3116967 None:intergenic
GTCCCACAACAAGTTGCAAT+TGG 0.462581 4:-3117460 MsG0480018301.01.T01:CDS
AACCCTAGAAGAAGAGTTTG+AGG 0.465593 4:-3117557 MsG0480018301.01.T01:CDS
GGACCAATTGCAACTTGTTG+TGG 0.473116 4:+3117457 None:intergenic
TTTCTTTCAAAGCTAATCAA+AGG 0.474056 4:-3116752 MsG0480018301.01.T01:CDS
TGTTGACCAATTGACGAAGT+TGG 0.477918 4:-3117332 MsG0480018301.01.T01:CDS
TTCAATAGTCTTATCCAAGA+AGG 0.479632 4:+3116163 None:intergenic
TTCTTTCAAAGCTAATCAAA+GGG 0.491241 4:-3116751 MsG0480018301.01.T01:CDS
AAAGAACAAAACACCCTTGG+TGG 0.493519 4:-3116549 MsG0480018301.01.T01:CDS
AGTTGAGATTCAACAAGAAG+TGG 0.506414 4:-3116852 MsG0480018301.01.T01:CDS
GACCAATTGCAACTTGTTGT+GGG 0.507876 4:+3117458 None:intergenic
GTTGCATATGAATCATCAGT+TGG 0.515619 4:-3116362 MsG0480018301.01.T01:CDS
GGATTTGAATGGCGAAACCT+TGG 0.521949 4:-3117275 MsG0480018301.01.T01:CDS
GTTCACATCCAAACTAATTG+TGG 0.522949 4:+3116409 None:intergenic
TATGAATCATCAGTTGGATC+GGG 0.523043 4:-3116356 MsG0480018301.01.T01:CDS
CGTTACACAGAATTGATGAA+TGG 0.524075 4:-3116317 MsG0480018301.01.T01:CDS
AAGTTTGATTCCTGGAAGGT+TGG 0.528668 4:+3116652 None:intergenic
GTTTACAAAATGAGACATGT+TGG 0.533371 4:+3117165 None:intergenic
GGCACTAGAGCTTACATCGC+CGG 0.536183 4:-3115967 MsG0480018301.01.T01:CDS
CACCCAAAGATTCTCATCAA+AGG 0.543342 4:+3117594 None:intergenic
AAACTCTCAAAAGAAAGAAG+AGG 0.550779 4:-3116603 MsG0480018301.01.T01:CDS
CTAATCAAAGGGCCTTTGCA+TGG 0.552443 4:-3116740 MsG0480018301.01.T01:CDS
CTTGGATAAGACTATTGAAG+AGG 0.552508 4:-3116159 MsG0480018301.01.T01:CDS
TTCACATCCAAACTAATTGT+GGG 0.553100 4:+3116410 None:intergenic
GAAGTGGCTAACATGTGGAA+TGG 0.555812 4:-3116218 MsG0480018301.01.T01:CDS
ATATGAATCATCAGTTGGAT+CGG 0.555963 4:-3116357 MsG0480018301.01.T01:CDS
TCTAAAGAACAAAACACCCT+TGG 0.564159 4:-3116552 MsG0480018301.01.T01:CDS
TTGAACAACTTGTGATTGCA+GGG 0.565312 4:-3116505 MsG0480018301.01.T01:CDS
TCAATAGTCTTATCCAAGAA+GGG 0.570380 4:+3116164 None:intergenic
ATCACAAGTTGTTCAACAGA+AGG 0.571806 4:+3116512 None:intergenic
CATGCAAGAAGAATCAAGAA+AGG 0.584879 4:-3117197 MsG0480018301.01.T01:CDS
TTACAAGTTTGATTCCTGGA+AGG 0.589208 4:+3116648 None:intergenic
GAACAAAACACCCTTGGTGG+AGG 0.589662 4:-3116546 MsG0480018301.01.T01:CDS
TACTCTTCAAACATCTTGAA+GGG 0.594471 4:+3116968 None:intergenic
CAAGAAGTGGATCAACAAGA+AGG 0.599718 4:-3116839 MsG0480018301.01.T01:CDS
TTCTTGACGCCAATAATGGT+AGG 0.599841 4:+3117435 None:intergenic
TGTCATGAACAAGAGGAAGA+TGG 0.606762 4:+3116040 None:intergenic
GCAAGGCTGTCATGAACAAG+AGG 0.607214 4:+3116033 None:intergenic
CAAGTCATTGAGATTGTCAA+GGG 0.609843 4:-3116189 MsG0480018301.01.T01:CDS
ATAAAGAAGTGGCTAACATG+TGG 0.611887 4:-3116223 MsG0480018301.01.T01:CDS
AACAATCATCATCCACGCCA+AGG 0.614510 4:+3117258 None:intergenic
CCTAGAAGAAGAGTTTGAGG+AGG 0.616622 4:-3117554 MsG0480018301.01.T01:CDS
GCAAGTCATTGAGATTGTCA+AGG 0.627588 4:-3116190 MsG0480018301.01.T01:CDS
ATAGTGATTTCCTCCACCAA+GGG 0.631478 4:+3116536 None:intergenic
TCTTGACGCCAATAATGGTA+GGG 0.634295 4:+3117436 None:intergenic
ATGTCATCGCTTCTTTGACA+AGG 0.643036 4:-3115988 MsG0480018301.01.T01:CDS
GTGTAACGAGTTATAACCAA+AGG 0.648298 4:+3116332 None:intergenic
AATAGTGATTTCCTCCACCA+AGG 0.656034 4:+3116535 None:intergenic
TGAATGGCGAAACCTTGGCG+TGG 0.695714 4:-3117270 MsG0480018301.01.T01:CDS
TGAACAACTTGTGATTGCAG+GGG 0.724681 4:-3116504 MsG0480018301.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTTTCTCAAAACAAATAA+TGG + Chr4:3116499-3116518 None:intergenic 20.0%
!! TACTCAAAAATTTCTTAACA+TGG + Chr4:3116789-3116808 None:intergenic 20.0%
!! TGTTGATATTAATGTGTATA+AGG - Chr4:3116563-3116582 MsG0480018301.01.T01:CDS 20.0%
!!! AGAAATTTTTGAGTATACTT+TGG - Chr4:3116794-3116813 MsG0480018301.01.T01:CDS 20.0%
!!! TCATGTTGTTTTTCTAATTT+TGG + Chr4:3116691-3116710 None:intergenic 20.0%
! ATACAATGAAGATCAAGATT+TGG - Chr4:3117454-3117473 MsG0480018301.01.T01:CDS 25.0%
! CAAAAATTTCTTAACATGGA+TGG + Chr4:3116785-3116804 None:intergenic 25.0%
! CTTAAAAAGTGATAAAGAAG+TGG - Chr4:3117338-3117357 MsG0480018301.01.T01:CDS 25.0%
! GTTAATTTCTTACCTACAAA+TGG - Chr4:3117090-3117109 MsG0480018301.01.T01:CDS 25.0%
! TTCTTTCAAAGCTAATCAAA+GGG - Chr4:3116821-3116840 MsG0480018301.01.T01:CDS 25.0%
! TTTCTTTCAAAGCTAATCAA+AGG - Chr4:3116820-3116839 MsG0480018301.01.T01:CDS 25.0%
!! CAAAGATTCTAAGAGAAAAA+GGG - Chr4:3117301-3117320 MsG0480018301.01.T01:CDS 25.0%
!! CAAGTTTCTAAGAAAAACTT+CGG + Chr4:3117190-3117209 None:intergenic 25.0%
!! CTCATTTTGTAAACTATGTT+GGG - Chr4:3116416-3116435 MsG0480018301.01.T01:CDS 25.0%
!! TCTCATTTTGTAAACTATGT+TGG - Chr4:3116415-3116434 MsG0480018301.01.T01:CDS 25.0%
!! TTTATGAAGTCTTATGTGTT+TGG - Chr4:3117480-3117499 MsG0480018301.01.T01:CDS 25.0%
!!! AACTTTTTAAGGACTTTTAG+AGG + Chr4:3116883-3116902 None:intergenic 25.0%
!!! CTTTCTTTTGAGAGTTTAAA+AGG + Chr4:3116966-3116985 None:intergenic 25.0%
!!! TGATACTTTGTAGTTGTTTT+TGG + Chr4:3116207-3116226 None:intergenic 25.0%
AAACTCTCAAAAGAAAGAAG+AGG - Chr4:3116969-3116988 MsG0480018301.01.T01:CDS 30.0%
AACCTTTGATGAGAATCTTT+GGG - Chr4:3115976-3115995 MsG0480018301.01.T01:CDS 30.0%
AAGTCCTTAAAAAGTTACCT+TGG - Chr4:3116887-3116906 MsG0480018301.01.T01:CDS 30.0%
AGTCCTTAAAAAGTTACCTT+GGG - Chr4:3116888-3116907 MsG0480018301.01.T01:CDS 30.0%
ATACTCTTCAAACATCTTGA+AGG + Chr4:3116608-3116627 None:intergenic 30.0%
ATATCCCTCAAAATTGCATT+AGG + Chr4:3116454-3116473 None:intergenic 30.0%
ATATGAATCATCAGTTGGAT+CGG - Chr4:3117215-3117234 MsG0480018301.01.T01:CDS 30.0%
CACAAATTCTTGGATTTGAA+TGG - Chr4:3116286-3116305 MsG0480018301.01.T01:CDS 30.0%
CATTCAAATCCAAGAATTTG+TGG + Chr4:3116288-3116307 None:intergenic 30.0%
GTTTACAAAATGAGACATGT+TGG + Chr4:3116410-3116429 None:intergenic 30.0%
TACTCTTCAAACATCTTGAA+GGG + Chr4:3116607-3116626 None:intergenic 30.0%
TTAACATGGATGGAATCATT+AGG + Chr4:3116775-3116794 None:intergenic 30.0%
TTCACATCCAAACTAATTGT+GGG + Chr4:3117165-3117184 None:intergenic 30.0%
! ATCTCCTAATGCAATTTTGA+GGG - Chr4:3116447-3116466 MsG0480018301.01.T01:CDS 30.0%
! ATGGCAGTTTTTAACATTCT+TGG - Chr4:3117506-3117525 MsG0480018301.01.T01:CDS 30.0%
! ATTTTGTAAACTATGTTGGG+AGG - Chr4:3116419-3116438 MsG0480018301.01.T01:CDS 30.0%
! CGAAGTTTTTCTTAGAAACT+TGG - Chr4:3117188-3117207 MsG0480018301.01.T01:CDS 30.0%
! GCAAAGATTCTAAGAGAAAA+AGG - Chr4:3117300-3117319 MsG0480018301.01.T01:CDS 30.0%
! GTACTAGAGTTTTCATCTTT+TGG + Chr4:3117000-3117019 None:intergenic 30.0%
! TATCTCCTAATGCAATTTTG+AGG - Chr4:3116446-3116465 MsG0480018301.01.T01:CDS 30.0%
! TGTTTTACAAGTTTGATTCC+TGG + Chr4:3116931-3116950 None:intergenic 30.0%
! TTTCCCAAGGTAACTTTTTA+AGG + Chr4:3116894-3116913 None:intergenic 30.0%
!! GAGTTTAAAAGGTGTTCAAT+AGG + Chr4:3116955-3116974 None:intergenic 30.0%
!! TCAATAGTCTTATCCAAGAA+GGG + Chr4:3117411-3117430 None:intergenic 30.0%
!! TTCAATAGTCTTATCCAAGA+AGG + Chr4:3117412-3117431 None:intergenic 30.0%
AGTTGAGATTCAACAAGAAG+TGG - Chr4:3116720-3116739 MsG0480018301.01.T01:CDS 35.0%
ATAAAGAAGTGGCTAACATG+TGG - Chr4:3117349-3117368 MsG0480018301.01.T01:CDS 35.0%
ATCACAAGTTGTTCAACAGA+AGG + Chr4:3117063-3117082 None:intergenic 35.0%
CAACCTTTGATGAGAATCTT+TGG - Chr4:3115975-3115994 MsG0480018301.01.T01:CDS 35.0%
CAAGTCATTGAGATTGTCAA+GGG - Chr4:3117383-3117402 MsG0480018301.01.T01:CDS 35.0%
CATGCAAGAAGAATCAAGAA+AGG - Chr4:3116375-3116394 MsG0480018301.01.T01:CDS 35.0%
CGTTACACAGAATTGATGAA+TGG - Chr4:3117255-3117274 MsG0480018301.01.T01:CDS 35.0%
CTTGATATGCTTCCATTTGT+AGG + Chr4:3117105-3117124 None:intergenic 35.0%
CTTGCATGGCATAAAATTGA+AGG + Chr4:3116363-3116382 None:intergenic 35.0%
CTTGGATAAGACTATTGAAG+AGG - Chr4:3117413-3117432 MsG0480018301.01.T01:CDS 35.0%
CTTTCTTGATTCTTCTTGCA+TGG + Chr4:3116377-3116396 None:intergenic 35.0%
GTGTAACGAGTTATAACCAA+AGG + Chr4:3117243-3117262 None:intergenic 35.0%
GTTCACATCCAAACTAATTG+TGG + Chr4:3117166-3117185 None:intergenic 35.0%
GTTGCATATGAATCATCAGT+TGG - Chr4:3117210-3117229 MsG0480018301.01.T01:CDS 35.0%
TAGAATCTTTGCATCGTTCT+CGG + Chr4:3117292-3117311 None:intergenic 35.0%
TATGAATCATCAGTTGGATC+GGG - Chr4:3117216-3117235 MsG0480018301.01.T01:CDS 35.0%
TCATCTTCCCACAATTAGTT+TGG - Chr4:3117155-3117174 MsG0480018301.01.T01:CDS 35.0%
TCTAAAGAACAAAACACCCT+TGG - Chr4:3117020-3117039 MsG0480018301.01.T01:CDS 35.0%
TGTTGTGGGACATAAGAATT+TGG + Chr4:3116103-3116122 None:intergenic 35.0%
TTACAAGTTTGATTCCTGGA+AGG + Chr4:3116927-3116946 None:intergenic 35.0%
TTGAACAACTTGTGATTGCA+GGG - Chr4:3117067-3117086 MsG0480018301.01.T01:CDS 35.0%
! AAGCTTTGGCACATTGAAAA+TGG + Chr4:3116065-3116084 None:intergenic 35.0%
! AGTCTTATGTGTTTGGTTCA+TGG - Chr4:3117487-3117506 MsG0480018301.01.T01:CDS 35.0%
!! ACCTTTTTGATTCCATGCAA+AGG + Chr4:3116847-3116866 None:intergenic 35.0%
!! CACTCTAAGACTTGAATGTT+AGG + Chr4:3116631-3116650 None:intergenic 35.0%
AAAGAACAAAACACCCTTGG+TGG - Chr4:3117023-3117042 MsG0480018301.01.T01:CDS 40.0%
AACCCTAGAAGAAGAGTTTG+AGG - Chr4:3116015-3116034 MsG0480018301.01.T01:CDS 40.0%
AAGTTTGATTCCTGGAAGGT+TGG + Chr4:3116923-3116942 None:intergenic 40.0%
AATAGTGATTTCCTCCACCA+AGG + Chr4:3117040-3117059 None:intergenic 40.0%
AGAGTTCTTGACGCCAATAA+TGG + Chr4:3116144-3116163 None:intergenic 40.0%
AGCATGCTACCACAAATTCT+TGG - Chr4:3116276-3116295 MsG0480018301.01.T01:CDS 40.0%
ATAGTGATTTCCTCCACCAA+GGG + Chr4:3117039-3117058 None:intergenic 40.0%
ATGTCATCGCTTCTTTGACA+AGG - Chr4:3117584-3117603 MsG0480018301.01.T01:CDS 40.0%
CAAGAAGTGGATCAACAAGA+AGG - Chr4:3116733-3116752 MsG0480018301.01.T01:CDS 40.0%
CAATGTGCCAAAGCTTCTTA+TGG - Chr4:3116069-3116088 MsG0480018301.01.T01:CDS 40.0%
CAATTGGTCCCTACCATTAT+TGG - Chr4:3116128-3116147 MsG0480018301.01.T01:CDS 40.0%
CACCCAAAGATTCTCATCAA+AGG + Chr4:3115981-3116000 None:intergenic 40.0%
CTCCTCAAACTCTTCTTCTA+GGG + Chr4:3116020-3116039 None:intergenic 40.0%
GAAAACATAACCAACCTTCC+AGG - Chr4:3116910-3116929 MsG0480018301.01.T01:CDS 40.0%
GAAGAGTTTGAGGAGGAAAA+TGG - Chr4:3116025-3116044 MsG0480018301.01.T01:CDS 40.0%
GCAAGTCATTGAGATTGTCA+AGG - Chr4:3117382-3117401 MsG0480018301.01.T01:CDS 40.0%
GCCTTTGCATGGAATCAAAA+AGG - Chr4:3116843-3116862 MsG0480018301.01.T01:CDS 40.0%
GTTGAACAACTTGTGATTGC+AGG - Chr4:3117066-3117085 MsG0480018301.01.T01:CDS 40.0%
TCACTAGCCATAAGAAGCTT+TGG + Chr4:3116079-3116098 None:intergenic 40.0%
TCTTGACGCCAATAATGGTA+GGG + Chr4:3116139-3116158 None:intergenic 40.0%
TGAACAACTTGTGATTGCAG+GGG - Chr4:3117068-3117087 MsG0480018301.01.T01:CDS 40.0%
TGTCATGAACAAGAGGAAGA+TGG + Chr4:3117535-3117554 None:intergenic 40.0%
TGTTGACCAATTGACGAAGT+TGG - Chr4:3116240-3116259 MsG0480018301.01.T01:CDS 40.0%
TTCTTGACGCCAATAATGGT+AGG + Chr4:3116140-3116159 None:intergenic 40.0%
TTTGCTCCAACTTCGTCAAT+TGG + Chr4:3116249-3116268 None:intergenic 40.0%
!! AGGTTGGTTATGTTTTCCCA+AGG + Chr4:3116907-3116926 None:intergenic 40.0%
!! GACCAATTGCAACTTGTTGT+GGG + Chr4:3116117-3116136 None:intergenic 40.0%
AACAATCATCATCCACGCCA+AGG + Chr4:3116317-3116336 None:intergenic 45.0%
CCTAGAAGAAGAGTTTGAGG+AGG - Chr4:3116018-3116037 MsG0480018301.01.T01:CDS 45.0%
CCTCCTCAAACTCTTCTTCT+AGG + Chr4:3116021-3116040 None:intergenic 45.0%
CTAATCAAAGGGCCTTTGCA+TGG - Chr4:3116832-3116851 MsG0480018301.01.T01:CDS 45.0%
GAAGTGGCTAACATGTGGAA+TGG - Chr4:3117354-3117373 MsG0480018301.01.T01:CDS 45.0%
GACAGAGCAAAAAGCTTGCA+AGG + Chr4:3117559-3117578 None:intergenic 45.0%
GGATTTGAATGGCGAAACCT+TGG - Chr4:3116297-3116316 MsG0480018301.01.T01:CDS 45.0%
GTCCCACAACAAGTTGCAAT+TGG - Chr4:3116112-3116131 MsG0480018301.01.T01:CDS 45.0%
!! GGACCAATTGCAACTTGTTG+TGG + Chr4:3116118-3116137 None:intergenic 45.0%
ATCAGTTGGATCGGGACCTT+TGG - Chr4:3117224-3117243 MsG0480018301.01.T01:CDS 50.0%
GAACAAAACACCCTTGGTGG+AGG - Chr4:3117026-3117045 MsG0480018301.01.T01:CDS 50.0%
GCAAGGCTGTCATGAACAAG+AGG + Chr4:3117542-3117561 None:intergenic 50.0%
!! ATTGTCAAGGGTGCCCTTCT+TGG - Chr4:3117395-3117414 MsG0480018301.01.T01:CDS 50.0%
GGCACTAGAGCTTACATCGC+CGG - Chr4:3117605-3117624 MsG0480018301.01.T01:CDS 55.0%
TGAATGGCGAAACCTTGGCG+TGG - Chr4:3116302-3116321 MsG0480018301.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr4 gene 3115956 3117638 3115956 ID=MsG0480018301.01;Name=MsG0480018301.01
Chr4 mRNA 3115956 3117638 3115956 ID=MsG0480018301.01.T01;Parent=MsG0480018301.01;Name=MsG0480018301.01.T01;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|560
Chr4 exon 3115956 3117638 3115956 ID=MsG0480018301.01.T01:exon:904;Parent=MsG0480018301.01.T01
Chr4 CDS 3115956 3117638 3115956 ID=MsG0480018301.01.T01:cds;Parent=MsG0480018301.01.T01
Gene Sequence

>MsG0480018301.01.T01

ATGTCATATAATTCTAAAACAACCTTTGATGAGAATCTTTGGGTGATTCATGTTCGAAAAACCCTAGAAGAAGAGTTTGAGGAGGAAAATGGTGAATTTTCTATATCCATTTTCAATGTGCCAAAGCTTCTTATGGCTAGTGATCCAAATTCTTATGTCCCACAACAAGTTGCAATTGGTCCCTACCATTATTGGCGTCAAGAACTCTTTGAAATGCAAACTCACAAGCTTGCATCAACAAAAAGATTCCAAAAACAACTACAAAGTATCAAGTTAGATAGTCTTGTTGACCAATTGACGAAGTTGGAGCAAAAGATTAGAGCATGCTACCACAAATTCTTGGATTTGAATGGCGAAACCTTGGCGTGGATGATGATTGTTGATGCATCATTCATACTTGAGTTCCTTCAATTTTATGCCATGCAAGAAGAATCAAGAAAGGTAATTTCTTCCAACATGTCTCATTTTGTAAACTATGTTGGGAGGAAATTATCTCCTAATGCAATTTTGAGGGATATTGTGATGCTTGAGAATCAAATTCCATTATTTGTTTTGAGAAAGATGCTTGAGTTAAAATTCTTTTCATCACAAGAAAATGCTGATGATGTGTTGATATTAATGTGTATAAGGTTGTTTAAAGAGATTTCACCCTTCAAGATGTTTGAAGAGTATCCTAACATTCAAGTCTTAGAGTGTGCACATTTGCTAGATTTTTTGTATGACATGATTGTGCCAAAATTAGAAAAACAACATGACATCATTGAAGTTGAGATTCAACAAGAAGTGGATCAACAAGAAGGAGATGAAAAGTCATCACCTAATGATTCCATCCATGTTAAGAAATTTTTGAGTATACTTTGGAAATTTCTTTCAAAGCTAATCAAAGGGCCTTTGCATGGAATCAAAAAGGTACTTATATCTGCACCTCTAAAAGTCCTTAAAAAGTTACCTTGGGAAAACATAACCAACCTTCCAGGAATCAAACTTGTAAAACAACCTATTGAACACCTTTTAAACTCTCAAAAGAAAGAAGAGGAAAAACCAAAAGATGAAAACTCTAGTACTCTAAAGAACAAAACACCCTTGGTGGAGGAAATCACTATTCCTTCTGTTGAACAACTTGTGATTGCAGGGGTTAATTTCTTACCTACAAATGGAAGCATATCAAGCATTAATTTTGATGCTAAAACAAAAACTTTTCATCTTCCCACAATTAGTTTGGATGTGAACACCGAAGTTTTTCTTAGAAACTTGGTTGCATATGAATCATCAGTTGGATCGGGACCTTTGGTTATAACTCGTTACACAGAATTGATGAATGGAATTATAGATTCCGAGAACGATGCAAAGATTCTAAGAGAAAAAGGGATTATTCTAAATCACTTAAAAAGTGATAAAGAAGTGGCTAACATGTGGAATGGAATGAGCAAGTCATTGAGATTGTCAAGGGTGCCCTTCTTGGATAAGACTATTGAAGAGGTTAACAAGAGTTATAATAATACAATGAAGATCAAGATTTGGAAATTTATGAAGTCTTATGTGTTTGGTTCATGGCAGTTTTTAACATTCTTGGCTACCATCTTCCTCTTGTTCATGACAGCCTTGCAAGCTTTTTGCTCTGTCTATACATGTCATCGCTTCTTTGACAAGGCACTAGAGCTTACATCGCCGGACACAAATTAA

Protein sequence

>MsG0480018301.01.T01

MSYNSKTTFDENLWVIHVRKTLEEEFEEENGEFSISIFNVPKLLMASDPNSYVPQQVAIGPYHYWRQELFEMQTHKLASTKRFQKQLQSIKLDSLVDQLTKLEQKIRACYHKFLDLNGETLAWMMIVDASFILEFLQFYAMQEESRKVISSNMSHFVNYVGRKLSPNAILRDIVMLENQIPLFVLRKMLELKFFSSQENADDVLILMCIRLFKEISPFKMFEEYPNIQVLECAHLLDFLYDMIVPKLEKQHDIIEVEIQQEVDQQEGDEKSSPNDSIHVKKFLSILWKFLSKLIKGPLHGIKKVLISAPLKVLKKLPWENITNLPGIKLVKQPIEHLLNSQKKEEEKPKDENSSTLKNKTPLVEEITIPSVEQLVIAGVNFLPTNGSISSINFDAKTKTFHLPTISLDVNTEVFLRNLVAYESSVGSGPLVITRYTELMNGIIDSENDAKILREKGIILNHLKSDKEVANMWNGMSKSLRLSRVPFLDKTIEEVNKSYNNTMKIKIWKFMKSYVFGSWQFLTFLATIFLLFMTALQAFCSVYTCHRFFDKALELTSPDTN*