Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480018301.01.T01 | XP_039689622.1 | 95.9 | 561 | 22 | 1 | 1 | 560 | 8 | 568 | 0 | 1059 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480018301.01.T01 | P0C897 | 46.198 | 526 | 238 | 11 | 2 | 519 | 9 | 497 | 8.12E-150 | 444 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480018301.01.T01 | A0A396HYS8 | 95.900 | 561 | 22 | 1 | 1 | 560 | 8 | 568 | 0.0 | 1059 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080047797.01 | MsG0480018301.01 | 0.805841 | 1.098749e-49 | 5.873577e-47 |
MsG0180000241.01 | MsG0480018301.01 | 0.814789 | 1.288395e-51 | 8.727143e-49 |
MsG0180000470.01 | MsG0480018301.01 | 0.801414 | 9.107166e-49 | 4.346515e-46 |
MsG0180000627.01 | MsG0480018301.01 | 0.812254 | 4.649641e-51 | 2.941870e-48 |
MsG0180000652.01 | MsG0480018301.01 | 0.801292 | 9.646793e-49 | 4.590087e-46 |
MsG0180001088.01 | MsG0480018301.01 | 0.804334 | 2.270360e-49 | 1.167482e-46 |
MsG0180004088.01 | MsG0480018301.01 | 0.833851 | 4.204917e-56 | 4.903332e-53 |
MsG0180004090.01 | MsG0480018301.01 | 0.807521 | 4.853456e-50 | 2.709197e-47 |
MsG0180004765.01 | MsG0480018301.01 | 0.802241 | 6.158207e-49 | 3.001536e-46 |
MsG0180005185.01 | MsG0480018301.01 | 0.802688 | 4.982029e-49 | 2.456034e-46 |
MsG0180005730.01 | MsG0480018301.01 | 0.829172 | 5.974099e-55 | 6.067079e-52 |
MsG0180006054.01 | MsG0480018301.01 | 0.800321 | 1.522255e-48 | 7.067273e-46 |
MsG0180006134.01 | MsG0480018301.01 | 0.810372 | 1.191156e-50 | 7.167443e-48 |
MsG0280011163.01 | MsG0480018301.01 | 0.800923 | 1.147614e-48 | 5.409937e-46 |
MsG0380012034.01 | MsG0480018301.01 | 0.810221 | 1.283847e-50 | 7.694390e-48 |
MsG0380012319.01 | MsG0480018301.01 | 0.814532 | 1.468831e-51 | 9.880925e-49 |
MsG0380012872.01 | MsG0480018301.01 | 0.806770 | 6.998981e-50 | 3.831279e-47 |
MsG0380014097.01 | MsG0480018301.01 | 0.816300 | 5.938191e-52 | 4.192078e-49 |
MsG0480018236.01 | MsG0480018301.01 | 0.801218 | 9.988700e-49 | 4.743833e-46 |
MsG0480018253.01 | MsG0480018301.01 | 0.805081 | 1.585884e-49 | 8.313555e-47 |
MsG0480018301.01 | MsG0480022579.01 | 0.820253 | 7.564162e-53 | 5.954467e-50 |
MsG0480018301.01 | MsG0480023045.01 | 0.830191 | 3.375438e-55 | 3.531141e-52 |
MsG0480018301.01 | MsG0480023251.01 | 0.812865 | 3.418661e-51 | 2.198079e-48 |
MsG0480018301.01 | MsG0580024690.01 | 0.812825 | 3.489464e-51 | 2.241196e-48 |
MsG0480018301.01 | MsG0580025834.01 | 0.802214 | 6.239943e-49 | 3.039139e-46 |
MsG0480018301.01 | MsG0580027411.01 | 0.806420 | 8.299247e-50 | 4.502436e-47 |
MsG0480018301.01 | MsG0580029880.01 | 0.835011 | 2.151005e-56 | 2.596804e-53 |
MsG0480018301.01 | MsG0680033465.01 | 0.801863 | 7.367935e-49 | 3.556808e-46 |
MsG0480018301.01 | MsG0680034721.01 | 0.815025 | 1.141939e-51 | 7.784810e-49 |
MsG0480018301.01 | MsG0680035123.01 | 0.807956 | 3.923815e-50 | 2.215242e-47 |
MsG0480018301.01 | MsG0680035445.01 | 0.822199 | 2.691876e-53 | 2.237708e-50 |
MsG0480018301.01 | MsG0680035580.01 | 0.836573 | 8.647000e-57 | 1.094035e-53 |
MsG0480018301.01 | MsG0680035707.01 | 0.817494 | 3.202403e-52 | 2.335827e-49 |
MsG0480018301.01 | MsG0780036593.01 | 0.811457 | 6.935515e-51 | 4.295362e-48 |
MsG0480018301.01 | MsG0780036595.01 | 0.834545 | 2.816883e-56 | 3.353809e-53 |
MsG0480018301.01 | MsG0780036602.01 | 0.834921 | 2.266388e-56 | 2.728842e-53 |
MsG0480018301.01 | MsG0780039573.01 | 0.803179 | 3.943433e-49 | 1.968547e-46 |
MsG0480018301.01 | MsG0780039832.01 | 0.815317 | 9.836740e-52 | 6.759355e-49 |
MsG0480018301.01 | MsG0780041767.01 | 0.879899 | 8.544970e-70 | 4.715987e-66 |
MsG0480018301.01 | MsG0880043157.01 | 0.804321 | 2.284503e-49 | 1.174364e-46 |
MsG0480018301.01 | MsG0880043941.01 | 0.801037 | 1.087437e-48 | 5.141296e-46 |
MsG0280006601.01 | MsG0480018301.01 | 0.810991 | 8.750497e-51 | 5.353859e-48 |
MsG0280006770.01 | MsG0480018301.01 | 0.813892 | 2.033558e-51 | 1.344462e-48 |
MsG0280008171.01 | MsG0480018301.01 | 0.808845 | 2.535053e-50 | 1.464976e-47 |
MsG0280010132.01 | MsG0480018301.01 | 0.818555 | 1.843540e-52 | 1.384436e-49 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480018301.01.T01 | MTR_4g009620 | 95.365 | 561 | 25 | 1 | 1 | 560 | 8 | 568 | 0.0 | 1050 |
MsG0480018301.01.T01 | MTR_4g009590 | 74.823 | 564 | 136 | 6 | 1 | 560 | 8 | 569 | 0.0 | 842 |
MsG0480018301.01.T01 | MTR_4g009340 | 74.592 | 551 | 136 | 4 | 1 | 548 | 8 | 557 | 0.0 | 798 |
MsG0480018301.01.T01 | MTR_7g017620 | 60.878 | 547 | 202 | 8 | 1 | 545 | 8 | 544 | 0.0 | 662 |
MsG0480018301.01.T01 | MTR_2g041180 | 34.921 | 189 | 105 | 5 | 5 | 191 | 25 | 197 | 5.14e-21 | 96.7 |
MsG0480018301.01.T01 | MTR_2g036320 | 34.254 | 181 | 105 | 4 | 13 | 191 | 46 | 214 | 4.74e-19 | 90.9 |
MsG0480018301.01.T01 | MTR_5g086230 | 33.133 | 166 | 105 | 5 | 36 | 198 | 29 | 191 | 2.71e-17 | 80.9 |
MsG0480018301.01.T01 | MTR_5g086340 | 33.831 | 201 | 114 | 9 | 364 | 557 | 257 | 445 | 4.77e-17 | 84.3 |
MsG0480018301.01.T01 | MTR_5g086340 | 29.469 | 207 | 127 | 7 | 36 | 237 | 33 | 225 | 7.36e-15 | 77.4 |
MsG0480018301.01.T01 | MTR_5g087580 | 30.688 | 189 | 123 | 5 | 364 | 550 | 38 | 220 | 1.20e-16 | 79.7 |
MsG0480018301.01.T01 | MTR_5g016570 | 29.825 | 171 | 108 | 6 | 14 | 179 | 78 | 241 | 1.36e-15 | 80.1 |
MsG0480018301.01.T01 | MTR_5g086260 | 31.217 | 189 | 111 | 8 | 370 | 550 | 137 | 314 | 3.10e-15 | 77.4 |
MsG0480018301.01.T01 | MTR_8g005295 | 30.481 | 187 | 116 | 4 | 18 | 190 | 19 | 205 | 1.13e-14 | 77.0 |
MsG0480018301.01.T01 | MTR_8g005295 | 28.846 | 156 | 110 | 1 | 380 | 535 | 348 | 502 | 2.26e-11 | 66.6 |
MsG0480018301.01.T01 | MTR_7g060840 | 30.102 | 196 | 126 | 5 | 353 | 541 | 241 | 432 | 2.09e-14 | 75.9 |
MsG0480018301.01.T01 | MTR_8g005235 | 34.783 | 161 | 88 | 7 | 35 | 190 | 27 | 175 | 4.05e-14 | 75.1 |
MsG0480018301.01.T01 | MTR_6g011060 | 25.294 | 170 | 111 | 2 | 36 | 205 | 26 | 179 | 1.73e-13 | 73.2 |
MsG0480018301.01.T01 | MTR_6g011060 | 27.528 | 178 | 122 | 2 | 368 | 541 | 244 | 418 | 3.24e-11 | 65.9 |
MsG0480018301.01.T01 | MTR_7g011980 | 28.814 | 177 | 119 | 2 | 369 | 541 | 168 | 341 | 2.47e-13 | 72.0 |
MsG0480018301.01.T01 | MTR_8g006525 | 30.808 | 198 | 117 | 7 | 35 | 223 | 28 | 214 | 7.67e-13 | 70.9 |
MsG0480018301.01.T01 | MTR_8g005285 | 30.588 | 170 | 104 | 4 | 35 | 190 | 36 | 205 | 9.01e-13 | 71.2 |
MsG0480018301.01.T01 | MTR_8g005285 | 30.556 | 144 | 96 | 2 | 392 | 535 | 349 | 488 | 7.35e-12 | 68.2 |
MsG0480018301.01.T01 | MTR_6g010890 | 28.261 | 184 | 123 | 3 | 366 | 541 | 243 | 425 | 9.39e-13 | 70.9 |
MsG0480018301.01.T01 | MTR_6g010920 | 25.641 | 156 | 100 | 3 | 36 | 191 | 26 | 165 | 3.82e-12 | 68.9 |
MsG0480018301.01.T01 | MTR_8g005325 | 32.298 | 161 | 92 | 6 | 35 | 190 | 56 | 204 | 4.08e-12 | 68.9 |
MsG0480018301.01.T01 | MTR_8g005325 | 29.104 | 134 | 94 | 1 | 400 | 533 | 330 | 462 | 2.41e-11 | 66.6 |
MsG0480018301.01.T01 | MTR_6g009590 | 29.670 | 182 | 121 | 2 | 364 | 541 | 232 | 410 | 4.26e-12 | 68.6 |
MsG0480018301.01.T01 | MTR_6g009590 | 26.875 | 160 | 93 | 4 | 36 | 191 | 26 | 165 | 6.19e-12 | 68.2 |
MsG0480018301.01.T01 | MTR_2g035640 | 27.485 | 171 | 122 | 2 | 368 | 537 | 175 | 344 | 4.36e-12 | 68.2 |
MsG0480018301.01.T01 | MTR_3g079390 | 29.480 | 173 | 121 | 1 | 370 | 541 | 277 | 449 | 4.62e-12 | 68.6 |
MsG0480018301.01.T01 | MTR_7g060080 | 31.724 | 145 | 97 | 2 | 399 | 542 | 49 | 192 | 5.99e-12 | 65.5 |
MsG0480018301.01.T01 | MTR_8g005225 | 28.834 | 163 | 112 | 4 | 379 | 541 | 297 | 455 | 8.09e-12 | 68.2 |
MsG0480018301.01.T01 | MTR_6g011050 | 26.582 | 158 | 100 | 4 | 35 | 191 | 24 | 166 | 1.04e-11 | 67.4 |
MsG0480018301.01.T01 | MTR_3g466740 | 25.604 | 207 | 132 | 5 | 14 | 212 | 11 | 203 | 1.37e-11 | 67.4 |
MsG0480018301.01.T01 | MTR_6g009610 | 25.000 | 156 | 101 | 3 | 36 | 191 | 26 | 165 | 2.29e-11 | 66.2 |
MsG0480018301.01.T01 | MTR_6g009610 | 28.652 | 178 | 120 | 2 | 368 | 541 | 236 | 410 | 4.49e-11 | 65.5 |
MsG0480018301.01.T01 | MTR_0209s0060 | 32.075 | 159 | 92 | 7 | 35 | 188 | 29 | 176 | 2.36e-11 | 66.2 |
MsG0480018301.01.T01 | MTR_0209s0030 | 32.075 | 159 | 92 | 7 | 35 | 188 | 29 | 176 | 2.36e-11 | 66.2 |
MsG0480018301.01.T01 | MTR_6g009170 | 25.749 | 167 | 107 | 3 | 34 | 200 | 24 | 173 | 2.50e-11 | 66.2 |
MsG0480018301.01.T01 | MTR_7g060310 | 31.250 | 144 | 91 | 3 | 402 | 541 | 348 | 487 | 2.92e-11 | 66.2 |
MsG0480018301.01.T01 | MTR_7g059480 | 29.577 | 142 | 98 | 2 | 402 | 542 | 634 | 774 | 9.13e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480018301.01.T01 | AT3G02645 | 46.198 | 526 | 238 | 11 | 2 | 519 | 9 | 497 | 8.28e-151 | 444 |
MsG0480018301.01.T01 | AT3G50180 | 32.039 | 206 | 129 | 5 | 14 | 217 | 155 | 351 | 1.16e-25 | 111 |
MsG0480018301.01.T01 | AT3G50180 | 28.571 | 182 | 122 | 5 | 368 | 543 | 403 | 582 | 3.96e-11 | 66.2 |
MsG0480018301.01.T01 | AT3G50120 | 33.333 | 207 | 126 | 6 | 14 | 217 | 80 | 277 | 1.27e-25 | 111 |
MsG0480018301.01.T01 | AT3G50120 | 27.473 | 182 | 126 | 4 | 368 | 546 | 350 | 528 | 5.87e-11 | 65.5 |
MsG0480018301.01.T01 | AT3G50170 | 30.841 | 214 | 136 | 7 | 6 | 217 | 84 | 287 | 2.95e-24 | 105 |
MsG0480018301.01.T01 | AT3G50170 | 30.841 | 214 | 136 | 7 | 6 | 217 | 84 | 287 | 1.02e-23 | 105 |
MsG0480018301.01.T01 | AT3G50170 | 26.111 | 180 | 131 | 2 | 368 | 546 | 358 | 536 | 1.49e-11 | 67.4 |
MsG0480018301.01.T01 | AT3G50140 | 30.144 | 209 | 136 | 5 | 14 | 220 | 90 | 290 | 1.27e-22 | 100 |
MsG0480018301.01.T01 | AT3G50150 | 29.469 | 207 | 135 | 6 | 14 | 217 | 67 | 265 | 1.33e-22 | 101 |
MsG0480018301.01.T01 | AT3G50140 | 30.144 | 209 | 136 | 5 | 14 | 220 | 90 | 290 | 1.55e-22 | 101 |
MsG0480018301.01.T01 | AT3G50140 | 25.373 | 201 | 144 | 3 | 347 | 542 | 333 | 532 | 1.52e-11 | 67.4 |
MsG0480018301.01.T01 | AT3G50150 | 29.469 | 207 | 135 | 6 | 14 | 217 | 67 | 265 | 1.98e-22 | 101 |
MsG0480018301.01.T01 | AT3G50150 | 29.808 | 208 | 129 | 7 | 351 | 546 | 304 | 506 | 8.77e-16 | 80.9 |
MsG0480018301.01.T01 | AT3G50130 | 28.155 | 206 | 138 | 5 | 14 | 217 | 116 | 313 | 2.09e-22 | 101 |
MsG0480018301.01.T01 | AT3G50160 | 29.808 | 208 | 127 | 7 | 13 | 218 | 81 | 271 | 1.30e-18 | 89.4 |
MsG0480018301.01.T01 | AT3G50160 | 29.851 | 201 | 123 | 7 | 350 | 543 | 306 | 495 | 2.10e-13 | 73.2 |
MsG0480018301.01.T01 | AT3G50190 | 29.787 | 188 | 123 | 5 | 14 | 199 | 73 | 253 | 3.60e-17 | 83.6 |
MsG0480018301.01.T01 | AT3G50190 | 29.787 | 188 | 123 | 5 | 14 | 199 | 73 | 253 | 4.38e-17 | 83.6 |
MsG0480018301.01.T01 | AT3G50190 | 29.787 | 188 | 123 | 5 | 14 | 199 | 73 | 253 | 4.38e-17 | 83.6 |
MsG0480018301.01.T01 | AT3G50190 | 29.787 | 188 | 123 | 5 | 14 | 199 | 73 | 253 | 8.50e-17 | 84.0 |
MsG0480018301.01.T01 | AT2G36430 | 26.641 | 259 | 153 | 7 | 7 | 248 | 11 | 249 | 4.12e-16 | 81.3 |
MsG0480018301.01.T01 | AT3G47250 | 31.694 | 183 | 111 | 4 | 15 | 190 | 36 | 211 | 5.66e-16 | 81.3 |
MsG0480018301.01.T01 | AT3G47250 | 31.694 | 183 | 111 | 4 | 15 | 190 | 36 | 211 | 5.66e-16 | 81.3 |
MsG0480018301.01.T01 | AT3G47250 | 31.694 | 183 | 111 | 4 | 15 | 190 | 36 | 211 | 5.66e-16 | 81.3 |
MsG0480018301.01.T01 | AT3G47200 | 30.189 | 265 | 155 | 11 | 28 | 284 | 39 | 281 | 6.96e-16 | 80.9 |
MsG0480018301.01.T01 | AT3G47200 | 30.189 | 265 | 155 | 11 | 28 | 284 | 39 | 281 | 6.96e-16 | 80.9 |
MsG0480018301.01.T01 | AT3G47210 | 33.742 | 163 | 100 | 3 | 28 | 190 | 86 | 240 | 1.03e-15 | 80.5 |
MsG0480018301.01.T01 | AT5G11290 | 30.435 | 161 | 97 | 3 | 34 | 191 | 32 | 180 | 4.92e-15 | 77.8 |
MsG0480018301.01.T01 | AT5G22550 | 28.889 | 225 | 140 | 9 | 27 | 245 | 36 | 246 | 1.47e-14 | 76.6 |
MsG0480018301.01.T01 | AT5G22550 | 27.222 | 180 | 130 | 1 | 368 | 546 | 308 | 487 | 6.52e-13 | 71.6 |
MsG0480018301.01.T01 | AT4G31980 | 26.286 | 175 | 114 | 3 | 35 | 206 | 293 | 455 | 3.66e-14 | 75.9 |
MsG0480018301.01.T01 | AT4G31980 | 29.143 | 175 | 119 | 4 | 369 | 541 | 506 | 677 | 1.50e-11 | 67.8 |
MsG0480018301.01.T01 | AT5G22550 | 27.222 | 180 | 130 | 1 | 368 | 546 | 259 | 438 | 6.45e-13 | 71.2 |
MsG0480018301.01.T01 | AT5G22560 | 25.564 | 266 | 167 | 8 | 4 | 250 | 13 | 266 | 1.06e-12 | 70.9 |
MsG0480018301.01.T01 | AT5G22560 | 25.967 | 181 | 131 | 3 | 368 | 546 | 335 | 514 | 4.18e-11 | 65.9 |
MsG0480018301.01.T01 | AT5G22540 | 27.727 | 220 | 145 | 6 | 28 | 245 | 24 | 231 | 3.55e-12 | 68.9 |
MsG0480018301.01.T01 | AT5G22540 | 26.404 | 178 | 130 | 1 | 370 | 546 | 258 | 435 | 4.07e-11 | 65.9 |
MsG0480018301.01.T01 | AT3G44710 | 25.123 | 203 | 137 | 5 | 51 | 250 | 64 | 254 | 1.54e-11 | 67.4 |
Find 87 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTCCTCAAACTCTTCTTCT+AGG | 0.153796 | 4:+3117554 | None:intergenic |
CAACCTTTGATGAGAATCTT+TGG | 0.179806 | 4:-3117597 | MsG0480018301.01.T01:CDS |
GCAAAGATTCTAAGAGAAAA+AGG | 0.234685 | 4:-3116272 | MsG0480018301.01.T01:CDS |
AAGCTTTGGCACATTGAAAA+TGG | 0.249135 | 4:+3117510 | None:intergenic |
TGTTGTGGGACATAAGAATT+TGG | 0.249676 | 4:+3117472 | None:intergenic |
CAATGTGCCAAAGCTTCTTA+TGG | 0.260296 | 4:-3117503 | MsG0480018301.01.T01:CDS |
CTTGATATGCTTCCATTTGT+AGG | 0.267254 | 4:+3116470 | None:intergenic |
AGCATGCTACCACAAATTCT+TGG | 0.287384 | 4:-3117296 | MsG0480018301.01.T01:CDS |
CAATTGGTCCCTACCATTAT+TGG | 0.314543 | 4:-3117444 | MsG0480018301.01.T01:CDS |
ATTGTCAAGGGTGCCCTTCT+TGG | 0.317888 | 4:-3116177 | MsG0480018301.01.T01:CDS |
TCATCTTCCCACAATTAGTT+TGG | 0.323564 | 4:-3116417 | MsG0480018301.01.T01:CDS |
GAAGAGTTTGAGGAGGAAAA+TGG | 0.326776 | 4:-3117547 | MsG0480018301.01.T01:CDS |
TGTTGATATTAATGTGTATA+AGG | 0.328473 | 4:-3117009 | MsG0480018301.01.T01:CDS |
ATCTTTCTCAAAACAAATAA+TGG | 0.347136 | 4:+3117076 | None:intergenic |
CACAAATTCTTGGATTTGAA+TGG | 0.360720 | 4:-3117286 | MsG0480018301.01.T01:CDS |
TTTATGAAGTCTTATGTGTT+TGG | 0.373276 | 4:-3116092 | MsG0480018301.01.T01:CDS |
ATACAATGAAGATCAAGATT+TGG | 0.376198 | 4:-3116118 | MsG0480018301.01.T01:CDS |
TTTGCTCCAACTTCGTCAAT+TGG | 0.377327 | 4:+3117326 | None:intergenic |
GCCTTTGCATGGAATCAAAA+AGG | 0.377556 | 4:-3116729 | MsG0480018301.01.T01:CDS |
AACCTTTGATGAGAATCTTT+GGG | 0.378384 | 4:-3117596 | MsG0480018301.01.T01:CDS |
TTAACATGGATGGAATCATT+AGG | 0.382803 | 4:+3116800 | None:intergenic |
TAGAATCTTTGCATCGTTCT+CGG | 0.385581 | 4:+3116283 | None:intergenic |
GTTGAACAACTTGTGATTGC+AGG | 0.386181 | 4:-3116506 | MsG0480018301.01.T01:CDS |
GAGTTTAAAAGGTGTTCAAT+AGG | 0.391781 | 4:+3116620 | None:intergenic |
CTCCTCAAACTCTTCTTCTA+GGG | 0.397644 | 4:+3117555 | None:intergenic |
ATCAGTTGGATCGGGACCTT+TGG | 0.401569 | 4:-3116348 | MsG0480018301.01.T01:CDS |
GTTAATTTCTTACCTACAAA+TGG | 0.403126 | 4:-3116482 | MsG0480018301.01.T01:CDS |
AGAGTTCTTGACGCCAATAA+TGG | 0.405296 | 4:+3117431 | None:intergenic |
CTTGCATGGCATAAAATTGA+AGG | 0.415607 | 4:+3117212 | None:intergenic |
CTTTCTTGATTCTTCTTGCA+TGG | 0.423017 | 4:+3117198 | None:intergenic |
AAGCAAAATTAATTTGTGTC+CGG | 0.428332 | 4:+3115948 | None:intergenic |
ATATCCCTCAAAATTGCATT+AGG | 0.430899 | 4:+3117121 | None:intergenic |
CACTCTAAGACTTGAATGTT+AGG | 0.432592 | 4:+3116944 | None:intergenic |
AGTCTTATGTGTTTGGTTCA+TGG | 0.433433 | 4:-3116085 | MsG0480018301.01.T01:CDS |
CATTCAAATCCAAGAATTTG+TGG | 0.446883 | 4:+3117287 | None:intergenic |
GAAAACATAACCAACCTTCC+AGG | 0.449083 | 4:-3116662 | MsG0480018301.01.T01:CDS |
TCACTAGCCATAAGAAGCTT+TGG | 0.455256 | 4:+3117496 | None:intergenic |
ATACTCTTCAAACATCTTGA+AGG | 0.456719 | 4:+3116967 | None:intergenic |
GTCCCACAACAAGTTGCAAT+TGG | 0.462581 | 4:-3117460 | MsG0480018301.01.T01:CDS |
AACCCTAGAAGAAGAGTTTG+AGG | 0.465593 | 4:-3117557 | MsG0480018301.01.T01:CDS |
GGACCAATTGCAACTTGTTG+TGG | 0.473116 | 4:+3117457 | None:intergenic |
TTTCTTTCAAAGCTAATCAA+AGG | 0.474056 | 4:-3116752 | MsG0480018301.01.T01:CDS |
TGTTGACCAATTGACGAAGT+TGG | 0.477918 | 4:-3117332 | MsG0480018301.01.T01:CDS |
TTCAATAGTCTTATCCAAGA+AGG | 0.479632 | 4:+3116163 | None:intergenic |
TTCTTTCAAAGCTAATCAAA+GGG | 0.491241 | 4:-3116751 | MsG0480018301.01.T01:CDS |
AAAGAACAAAACACCCTTGG+TGG | 0.493519 | 4:-3116549 | MsG0480018301.01.T01:CDS |
AGTTGAGATTCAACAAGAAG+TGG | 0.506414 | 4:-3116852 | MsG0480018301.01.T01:CDS |
GACCAATTGCAACTTGTTGT+GGG | 0.507876 | 4:+3117458 | None:intergenic |
GTTGCATATGAATCATCAGT+TGG | 0.515619 | 4:-3116362 | MsG0480018301.01.T01:CDS |
GGATTTGAATGGCGAAACCT+TGG | 0.521949 | 4:-3117275 | MsG0480018301.01.T01:CDS |
GTTCACATCCAAACTAATTG+TGG | 0.522949 | 4:+3116409 | None:intergenic |
TATGAATCATCAGTTGGATC+GGG | 0.523043 | 4:-3116356 | MsG0480018301.01.T01:CDS |
CGTTACACAGAATTGATGAA+TGG | 0.524075 | 4:-3116317 | MsG0480018301.01.T01:CDS |
AAGTTTGATTCCTGGAAGGT+TGG | 0.528668 | 4:+3116652 | None:intergenic |
GTTTACAAAATGAGACATGT+TGG | 0.533371 | 4:+3117165 | None:intergenic |
GGCACTAGAGCTTACATCGC+CGG | 0.536183 | 4:-3115967 | MsG0480018301.01.T01:CDS |
CACCCAAAGATTCTCATCAA+AGG | 0.543342 | 4:+3117594 | None:intergenic |
AAACTCTCAAAAGAAAGAAG+AGG | 0.550779 | 4:-3116603 | MsG0480018301.01.T01:CDS |
CTAATCAAAGGGCCTTTGCA+TGG | 0.552443 | 4:-3116740 | MsG0480018301.01.T01:CDS |
CTTGGATAAGACTATTGAAG+AGG | 0.552508 | 4:-3116159 | MsG0480018301.01.T01:CDS |
TTCACATCCAAACTAATTGT+GGG | 0.553100 | 4:+3116410 | None:intergenic |
GAAGTGGCTAACATGTGGAA+TGG | 0.555812 | 4:-3116218 | MsG0480018301.01.T01:CDS |
ATATGAATCATCAGTTGGAT+CGG | 0.555963 | 4:-3116357 | MsG0480018301.01.T01:CDS |
TCTAAAGAACAAAACACCCT+TGG | 0.564159 | 4:-3116552 | MsG0480018301.01.T01:CDS |
TTGAACAACTTGTGATTGCA+GGG | 0.565312 | 4:-3116505 | MsG0480018301.01.T01:CDS |
TCAATAGTCTTATCCAAGAA+GGG | 0.570380 | 4:+3116164 | None:intergenic |
ATCACAAGTTGTTCAACAGA+AGG | 0.571806 | 4:+3116512 | None:intergenic |
CATGCAAGAAGAATCAAGAA+AGG | 0.584879 | 4:-3117197 | MsG0480018301.01.T01:CDS |
TTACAAGTTTGATTCCTGGA+AGG | 0.589208 | 4:+3116648 | None:intergenic |
GAACAAAACACCCTTGGTGG+AGG | 0.589662 | 4:-3116546 | MsG0480018301.01.T01:CDS |
TACTCTTCAAACATCTTGAA+GGG | 0.594471 | 4:+3116968 | None:intergenic |
CAAGAAGTGGATCAACAAGA+AGG | 0.599718 | 4:-3116839 | MsG0480018301.01.T01:CDS |
TTCTTGACGCCAATAATGGT+AGG | 0.599841 | 4:+3117435 | None:intergenic |
TGTCATGAACAAGAGGAAGA+TGG | 0.606762 | 4:+3116040 | None:intergenic |
GCAAGGCTGTCATGAACAAG+AGG | 0.607214 | 4:+3116033 | None:intergenic |
CAAGTCATTGAGATTGTCAA+GGG | 0.609843 | 4:-3116189 | MsG0480018301.01.T01:CDS |
ATAAAGAAGTGGCTAACATG+TGG | 0.611887 | 4:-3116223 | MsG0480018301.01.T01:CDS |
AACAATCATCATCCACGCCA+AGG | 0.614510 | 4:+3117258 | None:intergenic |
CCTAGAAGAAGAGTTTGAGG+AGG | 0.616622 | 4:-3117554 | MsG0480018301.01.T01:CDS |
GCAAGTCATTGAGATTGTCA+AGG | 0.627588 | 4:-3116190 | MsG0480018301.01.T01:CDS |
ATAGTGATTTCCTCCACCAA+GGG | 0.631478 | 4:+3116536 | None:intergenic |
TCTTGACGCCAATAATGGTA+GGG | 0.634295 | 4:+3117436 | None:intergenic |
ATGTCATCGCTTCTTTGACA+AGG | 0.643036 | 4:-3115988 | MsG0480018301.01.T01:CDS |
GTGTAACGAGTTATAACCAA+AGG | 0.648298 | 4:+3116332 | None:intergenic |
AATAGTGATTTCCTCCACCA+AGG | 0.656034 | 4:+3116535 | None:intergenic |
TGAATGGCGAAACCTTGGCG+TGG | 0.695714 | 4:-3117270 | MsG0480018301.01.T01:CDS |
TGAACAACTTGTGATTGCAG+GGG | 0.724681 | 4:-3116504 | MsG0480018301.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATCTTTCTCAAAACAAATAA+TGG | + | Chr4:3116499-3116518 | None:intergenic | 20.0% |
!! | TACTCAAAAATTTCTTAACA+TGG | + | Chr4:3116789-3116808 | None:intergenic | 20.0% |
!! | TGTTGATATTAATGTGTATA+AGG | - | Chr4:3116563-3116582 | MsG0480018301.01.T01:CDS | 20.0% |
!!! | AGAAATTTTTGAGTATACTT+TGG | - | Chr4:3116794-3116813 | MsG0480018301.01.T01:CDS | 20.0% |
!!! | TCATGTTGTTTTTCTAATTT+TGG | + | Chr4:3116691-3116710 | None:intergenic | 20.0% |
! | ATACAATGAAGATCAAGATT+TGG | - | Chr4:3117454-3117473 | MsG0480018301.01.T01:CDS | 25.0% |
! | CAAAAATTTCTTAACATGGA+TGG | + | Chr4:3116785-3116804 | None:intergenic | 25.0% |
! | CTTAAAAAGTGATAAAGAAG+TGG | - | Chr4:3117338-3117357 | MsG0480018301.01.T01:CDS | 25.0% |
! | GTTAATTTCTTACCTACAAA+TGG | - | Chr4:3117090-3117109 | MsG0480018301.01.T01:CDS | 25.0% |
! | TTCTTTCAAAGCTAATCAAA+GGG | - | Chr4:3116821-3116840 | MsG0480018301.01.T01:CDS | 25.0% |
! | TTTCTTTCAAAGCTAATCAA+AGG | - | Chr4:3116820-3116839 | MsG0480018301.01.T01:CDS | 25.0% |
!! | CAAAGATTCTAAGAGAAAAA+GGG | - | Chr4:3117301-3117320 | MsG0480018301.01.T01:CDS | 25.0% |
!! | CAAGTTTCTAAGAAAAACTT+CGG | + | Chr4:3117190-3117209 | None:intergenic | 25.0% |
!! | CTCATTTTGTAAACTATGTT+GGG | - | Chr4:3116416-3116435 | MsG0480018301.01.T01:CDS | 25.0% |
!! | TCTCATTTTGTAAACTATGT+TGG | - | Chr4:3116415-3116434 | MsG0480018301.01.T01:CDS | 25.0% |
!! | TTTATGAAGTCTTATGTGTT+TGG | - | Chr4:3117480-3117499 | MsG0480018301.01.T01:CDS | 25.0% |
!!! | AACTTTTTAAGGACTTTTAG+AGG | + | Chr4:3116883-3116902 | None:intergenic | 25.0% |
!!! | CTTTCTTTTGAGAGTTTAAA+AGG | + | Chr4:3116966-3116985 | None:intergenic | 25.0% |
!!! | TGATACTTTGTAGTTGTTTT+TGG | + | Chr4:3116207-3116226 | None:intergenic | 25.0% |
AAACTCTCAAAAGAAAGAAG+AGG | - | Chr4:3116969-3116988 | MsG0480018301.01.T01:CDS | 30.0% | |
AACCTTTGATGAGAATCTTT+GGG | - | Chr4:3115976-3115995 | MsG0480018301.01.T01:CDS | 30.0% | |
AAGTCCTTAAAAAGTTACCT+TGG | - | Chr4:3116887-3116906 | MsG0480018301.01.T01:CDS | 30.0% | |
AGTCCTTAAAAAGTTACCTT+GGG | - | Chr4:3116888-3116907 | MsG0480018301.01.T01:CDS | 30.0% | |
ATACTCTTCAAACATCTTGA+AGG | + | Chr4:3116608-3116627 | None:intergenic | 30.0% | |
ATATCCCTCAAAATTGCATT+AGG | + | Chr4:3116454-3116473 | None:intergenic | 30.0% | |
ATATGAATCATCAGTTGGAT+CGG | - | Chr4:3117215-3117234 | MsG0480018301.01.T01:CDS | 30.0% | |
CACAAATTCTTGGATTTGAA+TGG | - | Chr4:3116286-3116305 | MsG0480018301.01.T01:CDS | 30.0% | |
CATTCAAATCCAAGAATTTG+TGG | + | Chr4:3116288-3116307 | None:intergenic | 30.0% | |
GTTTACAAAATGAGACATGT+TGG | + | Chr4:3116410-3116429 | None:intergenic | 30.0% | |
TACTCTTCAAACATCTTGAA+GGG | + | Chr4:3116607-3116626 | None:intergenic | 30.0% | |
TTAACATGGATGGAATCATT+AGG | + | Chr4:3116775-3116794 | None:intergenic | 30.0% | |
TTCACATCCAAACTAATTGT+GGG | + | Chr4:3117165-3117184 | None:intergenic | 30.0% | |
! | ATCTCCTAATGCAATTTTGA+GGG | - | Chr4:3116447-3116466 | MsG0480018301.01.T01:CDS | 30.0% |
! | ATGGCAGTTTTTAACATTCT+TGG | - | Chr4:3117506-3117525 | MsG0480018301.01.T01:CDS | 30.0% |
! | ATTTTGTAAACTATGTTGGG+AGG | - | Chr4:3116419-3116438 | MsG0480018301.01.T01:CDS | 30.0% |
! | CGAAGTTTTTCTTAGAAACT+TGG | - | Chr4:3117188-3117207 | MsG0480018301.01.T01:CDS | 30.0% |
! | GCAAAGATTCTAAGAGAAAA+AGG | - | Chr4:3117300-3117319 | MsG0480018301.01.T01:CDS | 30.0% |
! | GTACTAGAGTTTTCATCTTT+TGG | + | Chr4:3117000-3117019 | None:intergenic | 30.0% |
! | TATCTCCTAATGCAATTTTG+AGG | - | Chr4:3116446-3116465 | MsG0480018301.01.T01:CDS | 30.0% |
! | TGTTTTACAAGTTTGATTCC+TGG | + | Chr4:3116931-3116950 | None:intergenic | 30.0% |
! | TTTCCCAAGGTAACTTTTTA+AGG | + | Chr4:3116894-3116913 | None:intergenic | 30.0% |
!! | GAGTTTAAAAGGTGTTCAAT+AGG | + | Chr4:3116955-3116974 | None:intergenic | 30.0% |
!! | TCAATAGTCTTATCCAAGAA+GGG | + | Chr4:3117411-3117430 | None:intergenic | 30.0% |
!! | TTCAATAGTCTTATCCAAGA+AGG | + | Chr4:3117412-3117431 | None:intergenic | 30.0% |
AGTTGAGATTCAACAAGAAG+TGG | - | Chr4:3116720-3116739 | MsG0480018301.01.T01:CDS | 35.0% | |
ATAAAGAAGTGGCTAACATG+TGG | - | Chr4:3117349-3117368 | MsG0480018301.01.T01:CDS | 35.0% | |
ATCACAAGTTGTTCAACAGA+AGG | + | Chr4:3117063-3117082 | None:intergenic | 35.0% | |
CAACCTTTGATGAGAATCTT+TGG | - | Chr4:3115975-3115994 | MsG0480018301.01.T01:CDS | 35.0% | |
CAAGTCATTGAGATTGTCAA+GGG | - | Chr4:3117383-3117402 | MsG0480018301.01.T01:CDS | 35.0% | |
CATGCAAGAAGAATCAAGAA+AGG | - | Chr4:3116375-3116394 | MsG0480018301.01.T01:CDS | 35.0% | |
CGTTACACAGAATTGATGAA+TGG | - | Chr4:3117255-3117274 | MsG0480018301.01.T01:CDS | 35.0% | |
CTTGATATGCTTCCATTTGT+AGG | + | Chr4:3117105-3117124 | None:intergenic | 35.0% | |
CTTGCATGGCATAAAATTGA+AGG | + | Chr4:3116363-3116382 | None:intergenic | 35.0% | |
CTTGGATAAGACTATTGAAG+AGG | - | Chr4:3117413-3117432 | MsG0480018301.01.T01:CDS | 35.0% | |
CTTTCTTGATTCTTCTTGCA+TGG | + | Chr4:3116377-3116396 | None:intergenic | 35.0% | |
GTGTAACGAGTTATAACCAA+AGG | + | Chr4:3117243-3117262 | None:intergenic | 35.0% | |
GTTCACATCCAAACTAATTG+TGG | + | Chr4:3117166-3117185 | None:intergenic | 35.0% | |
GTTGCATATGAATCATCAGT+TGG | - | Chr4:3117210-3117229 | MsG0480018301.01.T01:CDS | 35.0% | |
TAGAATCTTTGCATCGTTCT+CGG | + | Chr4:3117292-3117311 | None:intergenic | 35.0% | |
TATGAATCATCAGTTGGATC+GGG | - | Chr4:3117216-3117235 | MsG0480018301.01.T01:CDS | 35.0% | |
TCATCTTCCCACAATTAGTT+TGG | - | Chr4:3117155-3117174 | MsG0480018301.01.T01:CDS | 35.0% | |
TCTAAAGAACAAAACACCCT+TGG | - | Chr4:3117020-3117039 | MsG0480018301.01.T01:CDS | 35.0% | |
TGTTGTGGGACATAAGAATT+TGG | + | Chr4:3116103-3116122 | None:intergenic | 35.0% | |
TTACAAGTTTGATTCCTGGA+AGG | + | Chr4:3116927-3116946 | None:intergenic | 35.0% | |
TTGAACAACTTGTGATTGCA+GGG | - | Chr4:3117067-3117086 | MsG0480018301.01.T01:CDS | 35.0% | |
! | AAGCTTTGGCACATTGAAAA+TGG | + | Chr4:3116065-3116084 | None:intergenic | 35.0% |
! | AGTCTTATGTGTTTGGTTCA+TGG | - | Chr4:3117487-3117506 | MsG0480018301.01.T01:CDS | 35.0% |
!! | ACCTTTTTGATTCCATGCAA+AGG | + | Chr4:3116847-3116866 | None:intergenic | 35.0% |
!! | CACTCTAAGACTTGAATGTT+AGG | + | Chr4:3116631-3116650 | None:intergenic | 35.0% |
AAAGAACAAAACACCCTTGG+TGG | - | Chr4:3117023-3117042 | MsG0480018301.01.T01:CDS | 40.0% | |
AACCCTAGAAGAAGAGTTTG+AGG | - | Chr4:3116015-3116034 | MsG0480018301.01.T01:CDS | 40.0% | |
AAGTTTGATTCCTGGAAGGT+TGG | + | Chr4:3116923-3116942 | None:intergenic | 40.0% | |
AATAGTGATTTCCTCCACCA+AGG | + | Chr4:3117040-3117059 | None:intergenic | 40.0% | |
AGAGTTCTTGACGCCAATAA+TGG | + | Chr4:3116144-3116163 | None:intergenic | 40.0% | |
AGCATGCTACCACAAATTCT+TGG | - | Chr4:3116276-3116295 | MsG0480018301.01.T01:CDS | 40.0% | |
ATAGTGATTTCCTCCACCAA+GGG | + | Chr4:3117039-3117058 | None:intergenic | 40.0% | |
ATGTCATCGCTTCTTTGACA+AGG | - | Chr4:3117584-3117603 | MsG0480018301.01.T01:CDS | 40.0% | |
CAAGAAGTGGATCAACAAGA+AGG | - | Chr4:3116733-3116752 | MsG0480018301.01.T01:CDS | 40.0% | |
CAATGTGCCAAAGCTTCTTA+TGG | - | Chr4:3116069-3116088 | MsG0480018301.01.T01:CDS | 40.0% | |
CAATTGGTCCCTACCATTAT+TGG | - | Chr4:3116128-3116147 | MsG0480018301.01.T01:CDS | 40.0% | |
CACCCAAAGATTCTCATCAA+AGG | + | Chr4:3115981-3116000 | None:intergenic | 40.0% | |
CTCCTCAAACTCTTCTTCTA+GGG | + | Chr4:3116020-3116039 | None:intergenic | 40.0% | |
GAAAACATAACCAACCTTCC+AGG | - | Chr4:3116910-3116929 | MsG0480018301.01.T01:CDS | 40.0% | |
GAAGAGTTTGAGGAGGAAAA+TGG | - | Chr4:3116025-3116044 | MsG0480018301.01.T01:CDS | 40.0% | |
GCAAGTCATTGAGATTGTCA+AGG | - | Chr4:3117382-3117401 | MsG0480018301.01.T01:CDS | 40.0% | |
GCCTTTGCATGGAATCAAAA+AGG | - | Chr4:3116843-3116862 | MsG0480018301.01.T01:CDS | 40.0% | |
GTTGAACAACTTGTGATTGC+AGG | - | Chr4:3117066-3117085 | MsG0480018301.01.T01:CDS | 40.0% | |
TCACTAGCCATAAGAAGCTT+TGG | + | Chr4:3116079-3116098 | None:intergenic | 40.0% | |
TCTTGACGCCAATAATGGTA+GGG | + | Chr4:3116139-3116158 | None:intergenic | 40.0% | |
TGAACAACTTGTGATTGCAG+GGG | - | Chr4:3117068-3117087 | MsG0480018301.01.T01:CDS | 40.0% | |
TGTCATGAACAAGAGGAAGA+TGG | + | Chr4:3117535-3117554 | None:intergenic | 40.0% | |
TGTTGACCAATTGACGAAGT+TGG | - | Chr4:3116240-3116259 | MsG0480018301.01.T01:CDS | 40.0% | |
TTCTTGACGCCAATAATGGT+AGG | + | Chr4:3116140-3116159 | None:intergenic | 40.0% | |
TTTGCTCCAACTTCGTCAAT+TGG | + | Chr4:3116249-3116268 | None:intergenic | 40.0% | |
!! | AGGTTGGTTATGTTTTCCCA+AGG | + | Chr4:3116907-3116926 | None:intergenic | 40.0% |
!! | GACCAATTGCAACTTGTTGT+GGG | + | Chr4:3116117-3116136 | None:intergenic | 40.0% |
AACAATCATCATCCACGCCA+AGG | + | Chr4:3116317-3116336 | None:intergenic | 45.0% | |
CCTAGAAGAAGAGTTTGAGG+AGG | - | Chr4:3116018-3116037 | MsG0480018301.01.T01:CDS | 45.0% | |
CCTCCTCAAACTCTTCTTCT+AGG | + | Chr4:3116021-3116040 | None:intergenic | 45.0% | |
CTAATCAAAGGGCCTTTGCA+TGG | - | Chr4:3116832-3116851 | MsG0480018301.01.T01:CDS | 45.0% | |
GAAGTGGCTAACATGTGGAA+TGG | - | Chr4:3117354-3117373 | MsG0480018301.01.T01:CDS | 45.0% | |
GACAGAGCAAAAAGCTTGCA+AGG | + | Chr4:3117559-3117578 | None:intergenic | 45.0% | |
GGATTTGAATGGCGAAACCT+TGG | - | Chr4:3116297-3116316 | MsG0480018301.01.T01:CDS | 45.0% | |
GTCCCACAACAAGTTGCAAT+TGG | - | Chr4:3116112-3116131 | MsG0480018301.01.T01:CDS | 45.0% | |
!! | GGACCAATTGCAACTTGTTG+TGG | + | Chr4:3116118-3116137 | None:intergenic | 45.0% |
ATCAGTTGGATCGGGACCTT+TGG | - | Chr4:3117224-3117243 | MsG0480018301.01.T01:CDS | 50.0% | |
GAACAAAACACCCTTGGTGG+AGG | - | Chr4:3117026-3117045 | MsG0480018301.01.T01:CDS | 50.0% | |
GCAAGGCTGTCATGAACAAG+AGG | + | Chr4:3117542-3117561 | None:intergenic | 50.0% | |
!! | ATTGTCAAGGGTGCCCTTCT+TGG | - | Chr4:3117395-3117414 | MsG0480018301.01.T01:CDS | 50.0% |
GGCACTAGAGCTTACATCGC+CGG | - | Chr4:3117605-3117624 | MsG0480018301.01.T01:CDS | 55.0% | |
TGAATGGCGAAACCTTGGCG+TGG | - | Chr4:3116302-3116321 | MsG0480018301.01.T01:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr4 | gene | 3115956 | 3117638 | 3115956 | ID=MsG0480018301.01;Name=MsG0480018301.01 |
Chr4 | mRNA | 3115956 | 3117638 | 3115956 | ID=MsG0480018301.01.T01;Parent=MsG0480018301.01;Name=MsG0480018301.01.T01;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|560 |
Chr4 | exon | 3115956 | 3117638 | 3115956 | ID=MsG0480018301.01.T01:exon:904;Parent=MsG0480018301.01.T01 |
Chr4 | CDS | 3115956 | 3117638 | 3115956 | ID=MsG0480018301.01.T01:cds;Parent=MsG0480018301.01.T01 |
Gene Sequence |
Protein sequence |