AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039573.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039573.01.T01 MTR_7g074850 84.783 46 7 0 1 46 1 46 2.90e-22 89.0
MsG0780039573.01.T01 MTR_7g074850 75.556 45 7 1 62 106 2 42 5.79e-16 71.6
MsG0780039573.01.T01 MTR_7g074730 80.435 46 9 0 1 46 1 46 2.95e-21 86.3
MsG0780039573.01.T01 MTR_7g074730 75.556 45 7 1 62 106 2 42 3.31e-16 72.4
MsG0780039573.01.T01 MTR_7g074820 78.261 46 10 0 1 46 1 46 1.88e-20 84.0
MsG0780039573.01.T01 MTR_7g074820 75.556 45 7 1 62 106 2 42 3.79e-16 72.4
MsG0780039573.01.T01 MTR_7g074865 87.805 41 5 0 1 41 1 41 4.81e-20 77.4
MsG0780039573.01.T01 MTR_7g074865 88.571 35 4 0 71 105 7 41 1.04e-15 66.2
MsG0780039573.01.T01 MTR_7g074880 78.261 46 10 0 1 46 1 46 1.16e-19 81.6
MsG0780039573.01.T01 MTR_7g074880 79.070 43 5 1 62 104 2 40 8.59e-15 68.6
MsG0780039573.01.T01 MTR_7g074710 73.913 46 12 0 1 46 1 46 1.43e-18 79.0
MsG0780039573.01.T01 MTR_7g074710 68.293 41 9 1 64 104 4 40 4.05e-12 61.2
MsG0780039573.01.T01 MTR_4g023730 57.895 38 16 0 1 38 1 38 7.56e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039573.01.T01 AT4G35420 56.522 46 19 1 1 46 1 45 1.16e-11 59.7
MsG0780039573.01.T01 AT5G42800 57.447 47 19 1 1 47 1 46 3.19e-11 58.5

Find 31 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGGAGGTACAGGGTTTCT+TGG 0.280712 7:-66042626 MsG0780039573.01.T01:CDS
ACTGGAGGTACAGGGTTTAT+TGG 0.300052 7:-66048242 MsG0780039573.01.T01:CDS
AAAATAGAAGTAGAAGAAAA+AGG 0.330960 7:-66042716 MsG0780039573.01.T01:CDS
GTACAGGGTTTCTTGGTTCA+TGG 0.333463 7:-66042619 MsG0780039573.01.T01:CDS
GAAAGGAAGAGTTGTGTGAC+TGG 0.344489 7:-66042644 MsG0780039573.01.T01:CDS
ATTACCACACTCTTCCTTTG+TGG 0.363478 7:+66042676 None:intergenic
AAAGGAAGAGTTTGTGTGAC+TGG 0.394367 7:-66048260 MsG0780039573.01.T01:CDS
GTACAGGGTTTATTGGTTCA+TGG 0.397157 7:-66048235 MsG0780039573.01.T01:CDS
CTTGTCAATTCTTCCACTGA+TGG 0.408651 7:-66048432 MsG0780039573.01.T01:five_prime_UTR
TGGTTCTGTATGAAGGTTGA+TGG 0.425110 7:+66048347 None:intergenic
ATTAAGAGACTTCTTGAAGA+TGG 0.426383 7:-66042593 MsG0780039573.01.T01:CDS
AGTTGTGTGACTGGAGGTAC+AGG 0.430077 7:-66042635 MsG0780039573.01.T01:CDS
GTTTGTGTGACTGGAGGTAC+AGG 0.443705 7:-66048251 MsG0780039573.01.T01:CDS
ATTAAGAGACTCCTTGAAGA+TGG 0.464111 7:-66048209 MsG0780039573.01.T01:CDS
ACAAAGGAAGAGTGTGGTAA+TGG 0.468927 7:-66042674 MsG0780039573.01.T01:CDS
TAACAGCGTAACCATCTTCA+AGG 0.473218 7:+66048198 None:intergenic
TGCAAGAGTGTACGTAGTAA+TGG 0.493048 7:-66048291 MsG0780039573.01.T01:exon
GTAGTAATGGAAGAAGAGAA+AGG 0.514620 7:-66048278 MsG0780039573.01.T01:exon
GTGGTAATGGAAGAAGAGAA+AGG 0.524390 7:-66042661 MsG0780039573.01.T01:CDS
ACCACTGTTAGAGCTGATCC+AGG 0.562994 7:-66048173 MsG0780039573.01.T01:intron
AATTAAATCAAAGCCATCAG+TGG 0.611580 7:+66048419 None:intergenic
ACCTGGATGAACTCTAACGG+TGG 0.616190 7:+66042556 None:intergenic
CTGACCTGGATGAACTCTAA+CGG 0.622324 7:+66042553 None:intergenic
GCCACCGTTAGAGTTCATCC+AGG 0.624738 7:-66042557 MsG0780039573.01.T01:CDS
TTTGTGTGACTGGAGGTACA+GGG 0.633409 7:-66048250 MsG0780039573.01.T01:CDS
AAGATTAAGCAAAACCACAA+AGG 0.643269 7:-66042690 MsG0780039573.01.T01:CDS
GTTGTGTGACTGGAGGTACA+GGG 0.644169 7:-66042634 MsG0780039573.01.T01:CDS
ACCTGGATCAGCTCTAACAG+TGG 0.657128 7:+66048172 None:intergenic
AAAACCACAAAGGAAGAGTG+TGG 0.683929 7:-66042680 MsG0780039573.01.T01:CDS
AGGAAGAGTTGTGTGACTGG+AGG 0.702220 7:-66042641 MsG0780039573.01.T01:CDS
GGAAGAGTTTGTGTGACTGG+AGG 0.702220 7:-66048257 MsG0780039573.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAATTAATAATATAT+AGG + Chr7:66044358-66044377 None:intergenic 0.0%
!! AAAATAATTTAGAAATTTGA+AGG + Chr7:66043350-66043369 None:intergenic 10.0%
!! AATTATTAGAAAAATTTGAA+TGG - Chr7:66043530-66043549 MsG0780039573.01.T01:intron 10.0%
!! ATAGATATAAAAAATGTTAT+TGG - Chr7:66043489-66043508 MsG0780039573.01.T01:intron 10.0%
!! ATATATTAACAATTAAGATA+CGG + Chr7:66047805-66047824 None:intergenic 10.0%
!! TAAATTATAAAAATTTCTCT+TGG - Chr7:66043386-66043405 MsG0780039573.01.T01:intron 10.0%
!!! AATTTAACTTTTTTTTAAGA+AGG + Chr7:66043030-66043049 None:intergenic 10.0%
!!! TAATAAGATGATTATTATTT+TGG + Chr7:66046711-66046730 None:intergenic 10.0%
!!! TAGAAATATAAACATTTTTA+GGG - Chr7:66046314-66046333 MsG0780039573.01.T01:intron 10.0%
!!! TTAGAAATATAAACATTTTT+AGG - Chr7:66046313-66046332 MsG0780039573.01.T01:intron 10.0%
!!! TTTATTCTATTTTTTTATCT+TGG + Chr7:66043120-66043139 None:intergenic 10.0%
!!! TTTTTTTAATATATGTACAT+TGG - Chr7:66047016-66047035 MsG0780039573.01.T01:intron 10.0%
!! AAATAACATATGCAAATATA+AGG + Chr7:66047458-66047477 None:intergenic 15.0%
!! AATAAACTACATATTGTTAT+TGG - Chr7:66042869-66042888 MsG0780039573.01.T01:intron 15.0%
!! AATAGATGAAAATTAACAAA+TGG - Chr7:66045472-66045491 MsG0780039573.01.T01:intron 15.0%
!! AATTAATAATATATAGGTAG+TGG + Chr7:66044352-66044371 None:intergenic 15.0%
!! ATTGATATAATCTTATTGAA+AGG - Chr7:66047232-66047251 MsG0780039573.01.T01:intron 15.0%
!! TAAAAAAAAGTTAAATTACC+CGG - Chr7:66043033-66043052 MsG0780039573.01.T01:intron 15.0%
!! TAAAAATGAAACACATTTAT+AGG - Chr7:66043579-66043598 MsG0780039573.01.T01:intron 15.0%
!! TATTTAAATAAACTAATGAC+AGG - Chr7:66043647-66043666 MsG0780039573.01.T01:intron 15.0%
!! TTGATATAATCTTATTGAAA+GGG - Chr7:66047233-66047252 MsG0780039573.01.T01:intron 15.0%
!!! AGTTTTTTTTACTTTCAAAA+AGG + Chr7:66042842-66042861 None:intergenic 15.0%
!!! ATTCATTTTTGCTTATATTT+TGG + Chr7:66047899-66047918 None:intergenic 15.0%
!!! ATTGGAAAACTTTTTTTTAA+AGG - Chr7:66043507-66043526 MsG0780039573.01.T01:intron 15.0%
!!! ATTTTGAAGAAAAATTTAGA+CGG + Chr7:66043233-66043252 None:intergenic 15.0%
!!! CTTTAATTTATCTATTTTGA+AGG + Chr7:66043324-66043343 None:intergenic 15.0%
!!! GTTTTTTTTACTTTCAAAAA+GGG + Chr7:66042841-66042860 None:intergenic 15.0%
!!! TTAAATTTTTCTATAGTAGA+TGG + Chr7:66044488-66044507 None:intergenic 15.0%
!!! TTCATTTTTGCTTATATTTT+GGG + Chr7:66047898-66047917 None:intergenic 15.0%
!!! TTTTTTATCTCTATTTTTTC+CGG + Chr7:66043055-66043074 None:intergenic 15.0%
!! AAAAGTAATATTTATACCAC+GGG - Chr7:66047712-66047731 MsG0780039573.01.T01:intron 20.0%
!! AAAATAGAAGTAGAAGAAAA+AGG - Chr7:66048269-66048288 MsG0780039573.01.T01:CDS 20.0%
!! AACATTGTATAATTAGATCA+TGG + Chr7:66043749-66043768 None:intergenic 20.0%
!! AATTTAACCATGCATTTATT+TGG + Chr7:66046243-66046262 None:intergenic 20.0%
!! ACATTGTATAATTAGATCAT+GGG + Chr7:66043748-66043767 None:intergenic 20.0%
!! ATATAATCCCACTTATATAA+AGG + Chr7:66046216-66046235 None:intergenic 20.0%
!! ATTAAACAACCTAAGATATA+TGG + Chr7:66044780-66044799 None:intergenic 20.0%
!! CAAAAGTAATATTTATACCA+CGG - Chr7:66047711-66047730 MsG0780039573.01.T01:intron 20.0%
!! CAATAAGATTATATCAATAG+AGG + Chr7:66047230-66047249 None:intergenic 20.0%
!! GAATTAACCATTCATTTATT+TGG + Chr7:66046148-66046167 None:intergenic 20.0%
!! GGTTAATTCATTCTTATAAA+TGG - Chr7:66046159-66046178 MsG0780039573.01.T01:intron 20.0%
!! TAAAGTATAAGAGAGAAAAT+TGG + Chr7:66047741-66047760 None:intergenic 20.0%
!! TAGTTCATATATCTTCTTTA+CGG + Chr7:66046785-66046804 None:intergenic 20.0%
!! TATTGTTTGAGAAAAAAATG+AGG - Chr7:66043554-66043573 MsG0780039573.01.T01:intron 20.0%
!! TCTATCAGTATCAATATTTA+GGG - Chr7:66047404-66047423 MsG0780039573.01.T01:intron 20.0%
!! TCTATGAGAAAAATAAACTT+AGG + Chr7:66046814-66046833 None:intergenic 20.0%
!! TTTATATAAGTGGGATTATA+TGG - Chr7:66046215-66046234 MsG0780039573.01.T01:intron 20.0%
!!! AAACCTAAGTATTTTTTAGA+AGG + Chr7:66044108-66044127 None:intergenic 20.0%
!!! AAATATTTAACAAAGTACCT+AGG - Chr7:66047097-66047116 MsG0780039573.01.T01:intron 20.0%
!!! AATATTTAACAAAGTACCTA+GGG - Chr7:66047098-66047117 MsG0780039573.01.T01:intron 20.0%
!!! ACTTTTGTTGACTAATTTTT+AGG - Chr7:66047966-66047985 MsG0780039573.01.T01:intron 20.0%
!!! ATTTTAGTCAAGTTATAACA+TGG + Chr7:66045741-66045760 None:intergenic 20.0%
!!! CTTCATCTTTTAAATGTTTT+CGG - Chr7:66043257-66043276 MsG0780039573.01.T01:intron 20.0%
!!! GATCTAATGTTTTTTATTGT+TGG + Chr7:66042593-66042612 None:intergenic 20.0%
!!! TACTTTTTACTTTAACACTT+TGG + Chr7:66044667-66044686 None:intergenic 20.0%
!!! TATAAGAGTACCAAAATTTT+AGG + Chr7:66047365-66047384 None:intergenic 20.0%
!!! TGTTTATCAACTTTTCAATT+CGG - Chr7:66046472-66046491 MsG0780039573.01.T01:intron 20.0%
!!! TTTCCTTCTAAAAAATACTT+AGG - Chr7:66044102-66044121 MsG0780039573.01.T01:intron 20.0%
!!! TTTTTATCTCTATTTTTTCC+GGG + Chr7:66043054-66043073 None:intergenic 20.0%
! AAAAAAATCTGGTTGAAAAG+AGG + Chr7:66046350-66046369 None:intergenic 25.0%
! AATGGATCCAAATAAATGAA+TGG - Chr7:66046138-66046157 MsG0780039573.01.T01:intron 25.0%
! AATTGATCTTTCTGTTCAAA+GGG - Chr7:66045977-66045996 MsG0780039573.01.T01:intron 25.0%
! AGAAATATGGCTAAAAAGAA+GGG + Chr7:66043881-66043900 None:intergenic 25.0%
! AGATGAAAATTAAGTCGTAT+TGG + Chr7:66046589-66046608 None:intergenic 25.0%
! ATACAATGGATGAAAGTTAT+TGG - Chr7:66045196-66045215 MsG0780039573.01.T01:intron 25.0%
! ATCTTTAACTCTTGAATCTA+CGG - Chr7:66044567-66044586 MsG0780039573.01.T01:intron 25.0%
! ATTAATATGTAGAACTCACT+TGG + Chr7:66045705-66045724 None:intergenic 25.0%
! CATGAGATGTAATATTGAAT+TGG - Chr7:66048146-66048165 MsG0780039573.01.T01:intron 25.0%
! GATATCGTTAGATTCATTAA+TGG + Chr7:66044852-66044871 None:intergenic 25.0%
! GCTTCATAACTAATAGTATA+GGG + Chr7:66044247-66044266 None:intergenic 25.0%
! GGTAAAGAAAGATATTTGAT+TGG - Chr7:66047673-66047692 MsG0780039573.01.T01:intron 25.0%
! GTCTATCAGTATCAATATTT+AGG - Chr7:66047403-66047422 MsG0780039573.01.T01:intron 25.0%
! TAATTGATCTTTCTGTTCAA+AGG - Chr7:66045976-66045995 MsG0780039573.01.T01:intron 25.0%
! TAGAAATATGGCTAAAAAGA+AGG + Chr7:66043882-66043901 None:intergenic 25.0%
! TCAACATCAATTATCATAGT+TGG - Chr7:66046033-66046052 MsG0780039573.01.T01:intron 25.0%
! TGAGAAATATTTATCAAGGA+GGG + Chr7:66044544-66044563 None:intergenic 25.0%
! TGCTTCATAACTAATAGTAT+AGG + Chr7:66044248-66044267 None:intergenic 25.0%
! TGTGTGAGAAATATTTATCA+AGG + Chr7:66044548-66044567 None:intergenic 25.0%
! TTCTTAGATACAATGAAGTT+TGG + Chr7:66043855-66043874 None:intergenic 25.0%
! TTTATGCCAAGAAAAAAATC+TGG + Chr7:66046361-66046380 None:intergenic 25.0%
!! ACAACTCAATCCTAAAATTT+TGG - Chr7:66047352-66047371 MsG0780039573.01.T01:intron 25.0%
!! ACACTTTTCCTTTATATAAG+TGG - Chr7:66046205-66046224 MsG0780039573.01.T01:intron 25.0%
!! CACGTTTATCTACATTTTAA+TGG - Chr7:66046120-66046139 MsG0780039573.01.T01:intron 25.0%
!! CACTTTTCCTTTATATAAGT+GGG - Chr7:66046206-66046225 MsG0780039573.01.T01:intron 25.0%
!! GTAATTCAAATGTCTTTTAG+TGG + Chr7:66043084-66043103 None:intergenic 25.0%
!! GTTTAATCAAGTGTGAATTT+TGG - Chr7:66044793-66044812 MsG0780039573.01.T01:intron 25.0%
!! TAGTTTACTAGCTTCTTATT+TGG - Chr7:66045395-66045414 MsG0780039573.01.T01:intron 25.0%
!! TTCTTCTACTTCTATTTTGT+TGG + Chr7:66048267-66048286 None:intergenic 25.0%
!!! AAAACATTTTAGTCACATTG+TGG - Chr7:66046276-66046295 MsG0780039573.01.T01:intron 25.0%
!!! AAACATTTTAGTCACATTGT+GGG - Chr7:66046277-66046296 MsG0780039573.01.T01:intron 25.0%
!!! AATTCCGAACACTTTTTTTT+TGG + Chr7:66047161-66047180 None:intergenic 25.0%
!!! CACTTCACTTTTATTTTTGT+TGG + Chr7:66042661-66042680 None:intergenic 25.0%
!!! CATTGCTCTTTTTAGAAATA+TGG + Chr7:66043894-66043913 None:intergenic 25.0%
!!! GCATTGAAATATTTAGCTTT+TGG + Chr7:66044948-66044967 None:intergenic 25.0%
!!! GTAACCAAAAAAAAAGTGTT+CGG - Chr7:66047154-66047173 MsG0780039573.01.T01:intron 25.0%
!!! TTTCAACCAGATTTTTTTCT+TGG - Chr7:66046352-66046371 MsG0780039573.01.T01:intron 25.0%
!!! TTTTTGCTTATATTTTGGGA+CGG + Chr7:66047894-66047913 None:intergenic 25.0%
AACCTAAGATATATGGTCTA+TGG + Chr7:66044773-66044792 None:intergenic 30.0%
AAGATTAAGCAAAACCACAA+AGG - Chr7:66048295-66048314 MsG0780039573.01.T01:five_prime_UTR 30.0%
AATATTGAATTGGTGTGTGT+GGG - Chr7:66048156-66048175 MsG0780039573.01.T01:intron 30.0%
AATGAATGTTGCAAGGAAAA+GGG - Chr7:66045915-66045934 MsG0780039573.01.T01:intron 30.0%
AATTAAATCAAAGCCATCAG+TGG + Chr7:66042569-66042588 None:intergenic 30.0%
AATTCAGAGAGACTTTCTAT+TGG + Chr7:66048086-66048105 None:intergenic 30.0%
ACCACTAATGTAAACAACAT+AGG - Chr7:66044317-66044336 MsG0780039573.01.T01:intron 30.0%
ACGAGAAAATGAACAATATG+AGG + Chr7:66046687-66046706 None:intergenic 30.0%
ACTGTTATAAAAGAGAGATG+TGG - Chr7:66048208-66048227 MsG0780039573.01.T01:CDS 30.0%
ACTGTTTCATCTAAAAAGAC+TGG + Chr7:66043695-66043714 None:intergenic 30.0%
AGACAAAGAAGAAGATACAA+TGG - Chr7:66045182-66045201 MsG0780039573.01.T01:intron 30.0%
AGATACAATGAAGTTTGGTT+GGG + Chr7:66043850-66043869 None:intergenic 30.0%
AGCGAAATTATGTAAATAGC+AGG - Chr7:66044878-66044897 MsG0780039573.01.T01:intron 30.0%
AGTTGTTGCAAACCTAATAA+GGG + Chr7:66047338-66047357 None:intergenic 30.0%
AGTTTAATGCAGCAATTGAA+GGG - Chr7:66044987-66045006 MsG0780039573.01.T01:intron 30.0%
AGTTTCTTAGAGGTTAATTG+CGG + Chr7:66045841-66045860 None:intergenic 30.0%
ATATAATAGACCCTATCGTT+TGG - Chr7:66044176-66044195 MsG0780039573.01.T01:intron 30.0%
ATTAAGAGACTTCTTGAAGA+TGG - Chr7:66048392-66048411 MsG0780039573.01.T01:five_prime_UTR 30.0%
ATTATCCAACCAAACTTCAA+GGG + Chr7:66043722-66043741 None:intergenic 30.0%
CTGTTATAAAAGAGAGATGT+GGG - Chr7:66048209-66048228 MsG0780039573.01.T01:CDS 30.0%
GACAATAATATCACCAACAA+TGG + Chr7:66046444-66046463 None:intergenic 30.0%
GAGAAATATTTATCAAGGAG+GGG + Chr7:66044543-66044562 None:intergenic 30.0%
GCGAAATTATGTAAATAGCA+GGG - Chr7:66044879-66044898 MsG0780039573.01.T01:intron 30.0%
GTCATAATAGTACACGAAAA+AGG - Chr7:66048179-66048198 MsG0780039573.01.T01:CDS 30.0%
GTGAGAAATATTTATCAAGG+AGG + Chr7:66044545-66044564 None:intergenic 30.0%
TAATATCACCAACAATGGAT+TGG + Chr7:66046439-66046458 None:intergenic 30.0%
TAATATTGAATTGGTGTGTG+TGG - Chr7:66048155-66048174 MsG0780039573.01.T01:intron 30.0%
TAGATACAATGAAGTTTGGT+TGG + Chr7:66043851-66043870 None:intergenic 30.0%
TATGGATCCAAATAAATGCA+TGG - Chr7:66046233-66046252 MsG0780039573.01.T01:intron 30.0%
TCTTCAATAGTTGCAATGAA+TGG + Chr7:66045633-66045652 None:intergenic 30.0%
TCTTTCAGTTCAAAATCAAC+TGG + Chr7:66045040-66045059 None:intergenic 30.0%
TGAGAAATCTGTTCTTGAAT+TGG - Chr7:66045286-66045305 MsG0780039573.01.T01:intron 30.0%
TGTAGTGTACACTAAGAATA+AGG - Chr7:66048236-66048255 MsG0780039573.01.T01:CDS 30.0%
TTGAACATCCTAATCCAAAA+GGG - Chr7:66045592-66045611 MsG0780039573.01.T01:intron 30.0%
TTTACTTTAACACTTTGGAC+CGG + Chr7:66044662-66044681 None:intergenic 30.0%
TTTGAACCATGAAGTTATCA+AGG - Chr7:66045943-66045962 MsG0780039573.01.T01:intron 30.0%
! ACGTTCTTTTAAACTTCACA+AGG + Chr7:66048062-66048081 None:intergenic 30.0%
! ATTAACCTCTAAGAAACTCA+TGG - Chr7:66045843-66045862 MsG0780039573.01.T01:intron 30.0%
! CAATAACCTTGATAACTTCA+TGG + Chr7:66045952-66045971 None:intergenic 30.0%
! CATCTCTCTTTTATAACAGT+CGG + Chr7:66048208-66048227 None:intergenic 30.0%
! CTATTTAAGATTGTGACGTT+CGG - Chr7:66048022-66048041 MsG0780039573.01.T01:intron 30.0%
! GGTTTACATGGACTAAAATA+GGG + Chr7:66046521-66046540 None:intergenic 30.0%
! TCCTATGTTGTTTACATTAG+TGG + Chr7:66044321-66044340 None:intergenic 30.0%
! TTATATCTCCCTTTTGGATT+AGG + Chr7:66045603-66045622 None:intergenic 30.0%
! TTCTTTACGGTTTGTTTAGT+CGG + Chr7:66046772-66046791 None:intergenic 30.0%
! TTGAGTCTTTTCAAAGACTA+AGG - Chr7:66046868-66046887 MsG0780039573.01.T01:intron 30.0%
!! GTTATGTGTTTTGTTGCTAT+GGG - Chr7:66047426-66047445 MsG0780039573.01.T01:intron 30.0%
!! TTGTTGACTAATTTTTAGGC+CGG - Chr7:66047970-66047989 MsG0780039573.01.T01:intron 30.0%
!!! AGAATTTTTCAAGACACAGT+TGG + Chr7:66044054-66044073 None:intergenic 30.0%
!!! TTTTTGTTGGTTCTGTATGA+AGG + Chr7:66042648-66042667 None:intergenic 30.0%
AAATGAGTTATGCATGCATG+TGG - Chr7:66043814-66043833 MsG0780039573.01.T01:intron 35.0%
AACAAATGGAAGTTGCATTC+AGG - Chr7:66045486-66045505 MsG0780039573.01.T01:intron 35.0%
AAGAACAGATTTCTCAGCTA+GGG + Chr7:66045282-66045301 None:intergenic 35.0%
AAGCAAGAAAATTAAGCCCT+AGG + Chr7:66047117-66047136 None:intergenic 35.0%
AATATGTTCGACCAAACGAT+AGG + Chr7:66044190-66044209 None:intergenic 35.0%
AATGAAAGGTCCTACAACAA+AGG + Chr7:66045349-66045368 None:intergenic 35.0%
AATGAGTTATGCATGCATGT+GGG - Chr7:66043815-66043834 MsG0780039573.01.T01:intron 35.0%
AATTCCTAATGCTCCATCAA+TGG + Chr7:66045088-66045107 None:intergenic 35.0%
AATTGCTGCATTAAACTCTC+AGG + Chr7:66044984-66045003 None:intergenic 35.0%
ACTGATCACATGCTTATATG+AGG - Chr7:66046393-66046412 MsG0780039573.01.T01:intron 35.0%
AGTAAACTATGAACAGATCC+AGG + Chr7:66045384-66045403 None:intergenic 35.0%
AGTGACAAAAGAACCATTGA+TGG - Chr7:66045072-66045091 MsG0780039573.01.T01:intron 35.0%
ATAATCCAAGAACGTACCAA+TGG + Chr7:66045435-66045454 None:intergenic 35.0%
ATATGTTCGACCAAACGATA+GGG + Chr7:66044189-66044208 None:intergenic 35.0%
ATATTGAATTGGTGTGTGTG+GGG - Chr7:66048157-66048176 MsG0780039573.01.T01:intron 35.0%
ATTAAGAGACTCCTTGAAGA+TGG - Chr7:66042776-66042795 MsG0780039573.01.T01:intron 35.0%
ATTGCTGCATTAAACTCTCA+GGG + Chr7:66044983-66045002 None:intergenic 35.0%
CAAAATTCACTCGCTACAAA+CGG - Chr7:66047517-66047536 MsG0780039573.01.T01:intron 35.0%
CAAACCTAATAAGGGATTAG+TGG + Chr7:66047330-66047349 None:intergenic 35.0%
CAATGAATGTTGCAAGGAAA+AGG - Chr7:66045914-66045933 MsG0780039573.01.T01:intron 35.0%
CATTATCCAACCAAACTTCA+AGG + Chr7:66043723-66043742 None:intergenic 35.0%
CTCCATAGACCATATATCTT+AGG - Chr7:66044768-66044787 MsG0780039573.01.T01:intron 35.0%
CTTGAACATCCTAATCCAAA+AGG - Chr7:66045591-66045610 MsG0780039573.01.T01:intron 35.0%
CTTGAATTGGAGAACAACAT+GGG - Chr7:66045299-66045318 MsG0780039573.01.T01:intron 35.0%
GAGTTGTTGCAAACCTAATA+AGG + Chr7:66047339-66047358 None:intergenic 35.0%
GAGTTTAATGCAGCAATTGA+AGG - Chr7:66044986-66045005 MsG0780039573.01.T01:intron 35.0%
GATTAGTGGAGGAAAACATT+AGG + Chr7:66047316-66047335 None:intergenic 35.0%
GCATCATCTCTAGCTAATAA+TGG + Chr7:66046953-66046972 None:intergenic 35.0%
GGGAAATTAGAACAAAAGAG+AGG - Chr7:66046086-66046105 MsG0780039573.01.T01:intron 35.0%
GTCAAGTTATAACATGGAGA+AGG + Chr7:66045735-66045754 None:intergenic 35.0%
TAATCCAAGAACGTACCAAT+GGG + Chr7:66045434-66045453 None:intergenic 35.0%
TACTTTCAAAAAGGGTTACC+TGG + Chr7:66042833-66042852 None:intergenic 35.0%
TATTTCACTCGACCAAGTTT+CGG - Chr7:66047833-66047852 MsG0780039573.01.T01:intron 35.0%
TCCTCTTATGACAAAAGGAA+GGG - Chr7:66046066-66046085 MsG0780039573.01.T01:intron 35.0%
TCTTGAATTGGAGAACAACA+TGG - Chr7:66045298-66045317 MsG0780039573.01.T01:intron 35.0%
TGTGACTGAAAAATAGGAAG+TGG - Chr7:66044001-66044020 MsG0780039573.01.T01:intron 35.0%
TTATTGCTTGTATCTCGTAC+CGG - Chr7:66045527-66045546 MsG0780039573.01.T01:intron 35.0%
! AGCGAGTATCAATTTTCTCT+CGG - Chr7:66047993-66048012 MsG0780039573.01.T01:intron 35.0%
! ATGTTGGCATTTGAAGTTCA+GGG + Chr7:66045682-66045701 None:intergenic 35.0%
! GAGCAATTATATCTCCCTTT+TGG + Chr7:66045609-66045628 None:intergenic 35.0%
! GGGTTTACATGGACTAAAAT+AGG + Chr7:66046522-66046541 None:intergenic 35.0%
! GTAGTAATGGAAGAAGAGAA+AGG - Chr7:66042707-66042726 MsG0780039573.01.T01:CDS 35.0%
! GTTTGTAGCGAGTGAATTTT+GGG + Chr7:66047518-66047537 None:intergenic 35.0%
! TCTTTTGTCACTATTTCCTC+TGG + Chr7:66045064-66045083 None:intergenic 35.0%
! TTCATCTCTAGAGAGCTTAT+CGG - Chr7:66045804-66045823 MsG0780039573.01.T01:intron 35.0%
! TTTTGAACTGAAAGAACCAG+AGG - Chr7:66045045-66045064 MsG0780039573.01.T01:intron 35.0%
!! GGTTATGTGTTTTGTTGCTA+TGG - Chr7:66047425-66047444 MsG0780039573.01.T01:intron 35.0%
!! TTTTAGATAGCACCGAAACT+TGG + Chr7:66047848-66047867 None:intergenic 35.0%
!!! AAACTTTGAAGCCTTTTGCT+TGG - Chr7:66045237-66045256 MsG0780039573.01.T01:intron 35.0%
!!! ATTTAGCTTTTGGCTGCATT+TGG + Chr7:66044938-66044957 None:intergenic 35.0%
AAAACCACAAAGGAAGAGTG+TGG - Chr7:66048305-66048324 MsG0780039573.01.T01:five_prime_UTR 40.0%
AAAGGAAGAGTTTGTGTGAC+TGG - Chr7:66042725-66042744 MsG0780039573.01.T01:CDS 40.0%
AATTGGAGAACAACATGGGT+TGG - Chr7:66045303-66045322 MsG0780039573.01.T01:intron 40.0%
ACAGGCATAAAGATAGGCTA+TGG - Chr7:66047652-66047671 MsG0780039573.01.T01:intron 40.0%
ACAGTTGTACCCTTGAAGTT+TGG - Chr7:66043710-66043729 MsG0780039573.01.T01:intron 40.0%
ACATATCGTACGAGTGTCAT+TGG - Chr7:66044704-66044723 MsG0780039573.01.T01:intron 40.0%
AGCATCCATGAGTTTCTTAG+AGG + Chr7:66045851-66045870 None:intergenic 40.0%
ATGAGTTATGCATGCATGTG+GGG - Chr7:66043816-66043835 MsG0780039573.01.T01:intron 40.0%
ATTACCACACTCTTCCTTTG+TGG + Chr7:66048312-66048331 None:intergenic 40.0%
CAAGAACAGATTTCTCAGCT+AGG + Chr7:66045283-66045302 None:intergenic 40.0%
CGGATCTGGACTCAAAATAT+TGG + Chr7:66047614-66047633 None:intergenic 40.0%
CTATTTGCCTCAATTCAAGG+AGG - Chr7:66043978-66043997 MsG0780039573.01.T01:intron 40.0%
CTCCTCTTATGACAAAAGGA+AGG - Chr7:66046065-66046084 MsG0780039573.01.T01:intron 40.0%
CTGCATTTGGAAGATTTGTG+AGG + Chr7:66044925-66044944 None:intergenic 40.0%
CTGGACTCAAAATATTGGTG+AGG + Chr7:66047609-66047628 None:intergenic 40.0%
CTTGTCAATTCTTCCACTGA+TGG - Chr7:66042553-66042572 MsG0780039573.01.T01:CDS 40.0%
GAGAAAATTGATACTCGCTC+CGG + Chr7:66047992-66048011 None:intergenic 40.0%
GATATATGGTCTATGGAGCA+CGG + Chr7:66044766-66044785 None:intergenic 40.0%
GCACTATTTGCCTCAATTCA+AGG - Chr7:66043975-66043994 MsG0780039573.01.T01:intron 40.0%
GGCAAATAGTGCATTGTGAT+TGG + Chr7:66043967-66043986 None:intergenic 40.0%
GGTAAGTGAAAGTTTCCCAT+TGG - Chr7:66045416-66045435 MsG0780039573.01.T01:intron 40.0%
GGTACGAGATACAAGCAATA+AGG + Chr7:66045528-66045547 None:intergenic 40.0%
GGTAGCTTAGGACAAATGAA+AGG + Chr7:66045363-66045382 None:intergenic 40.0%
GGTTACACCAAACACTTTGT+AGG + Chr7:66047140-66047159 None:intergenic 40.0%
TAACAGCGTAACCATCTTCA+AGG + Chr7:66042790-66042809 None:intergenic 40.0%
TCCTCCACTAATCCCTTATT+AGG - Chr7:66047323-66047342 MsG0780039573.01.T01:intron 40.0%
TCTAAGAAACTCATGGATGC+TGG - Chr7:66045850-66045869 MsG0780039573.01.T01:intron 40.0%
TCTCTCTGAATTGTTGTCTG+TGG - Chr7:66048094-66048113 MsG0780039573.01.T01:intron 40.0%
TGTAGAACTCACTTGGATGT+TGG + Chr7:66045698-66045717 None:intergenic 40.0%
TTAAGATTGTGACGTTCGGT+CGG - Chr7:66048026-66048045 MsG0780039573.01.T01:intron 40.0%
TTCATTTGTCCTAAGCTACC+TGG - Chr7:66045363-66045382 MsG0780039573.01.T01:intron 40.0%
TTGTACCCTTGAAGTTTGGT+TGG - Chr7:66043714-66043733 MsG0780039573.01.T01:intron 40.0%
! ACAAAGGAAGAGTGTGGTAA+TGG - Chr7:66048311-66048330 MsG0780039573.01.T01:five_prime_UTR 40.0%
! ACCTAATAAGGGATTAGTGG+AGG + Chr7:66047327-66047346 None:intergenic 40.0%
! AGAACCATTGATGGAGCATT+AGG - Chr7:66045081-66045100 MsG0780039573.01.T01:intron 40.0%
! AGGAGGTGTGACTGAAAAAT+AGG - Chr7:66043995-66044014 MsG0780039573.01.T01:intron 40.0%
! CATTTGAAGTTCAGGGTACT+TGG + Chr7:66045675-66045694 None:intergenic 40.0%
! CCACGAAGTGTTAATAGTGT+CGG - Chr7:66044633-66044652 MsG0780039573.01.T01:intron 40.0%
! CGTTTGTAGCGAGTGAATTT+TGG + Chr7:66047519-66047538 None:intergenic 40.0%
! CTTGCTTCCTACAAAGTGTT+TGG - Chr7:66047130-66047149 MsG0780039573.01.T01:intron 40.0%
! GATGTTGGCATTTGAAGTTC+AGG + Chr7:66045683-66045702 None:intergenic 40.0%
! TAGCCTTGACGAAATGTTTG+AGG - Chr7:66045888-66045907 MsG0780039573.01.T01:intron 40.0%
! TCCCTTCCTTTTGTCATAAG+AGG + Chr7:66046070-66046089 None:intergenic 40.0%
! TCCTTTTGTCATAAGAGGAG+CGG + Chr7:66046065-66046084 None:intergenic 40.0%
! TCTTGTACCACCTTTGTTGT+AGG - Chr7:66045336-66045355 MsG0780039573.01.T01:intron 40.0%
! TGCAAGAGTGTACGTAGTAA+TGG - Chr7:66042694-66042713 MsG0780039573.01.T01:CDS 40.0%
! TGGTTCTGTATGAAGGTTGA+TGG + Chr7:66042641-66042660 None:intergenic 40.0%
! TTTACGGTTTGTTTAGTCGG+TGG + Chr7:66046769-66046788 None:intergenic 40.0%
!! GTACAGGGTTTATTGGTTCA+TGG - Chr7:66042750-66042769 MsG0780039573.01.T01:intron 40.0%
!! GTGGTAATGGAAGAAGAGAA+AGG - Chr7:66048324-66048343 MsG0780039573.01.T01:five_prime_UTR 40.0%
AATCAACTGGAGTAGCTGTG+TGG + Chr7:66045027-66045046 None:intergenic 45.0%
ACACCATACGACCAAGCAAA+AGG + Chr7:66045251-66045270 None:intergenic 45.0%
ACTCTTGAATCTACGGTGTG+TGG - Chr7:66044574-66044593 MsG0780039573.01.T01:intron 45.0%
AGCCTATCTTTATGCCTGTG+AGG + Chr7:66047651-66047670 None:intergenic 45.0%
AGGACGCAATGAATGTTGCA+AGG - Chr7:66045908-66045927 MsG0780039573.01.T01:intron 45.0%
AGTCACACCTCCTTGAATTG+AGG + Chr7:66043988-66044007 None:intergenic 45.0%
CATCATCACATGCACCATAC+CGG + Chr7:66045549-66045568 None:intergenic 45.0%
CCACATGACCAATCCATTGT+TGG - Chr7:66046428-66046447 MsG0780039573.01.T01:intron 45.0%
CCGACACTATTAACACTTCG+TGG + Chr7:66044636-66044655 None:intergenic 45.0%
CCTGTGAGGACTAAAAACAG+GGG + Chr7:66047637-66047656 None:intergenic 45.0%
CGTCCTCAAACATTTCGTCA+AGG + Chr7:66045894-66045913 None:intergenic 45.0%
CTGACCTGGATGAACTCTAA+CGG + Chr7:66048435-66048454 None:intergenic 45.0%
GAAAGGAAGAGTTGTGTGAC+TGG - Chr7:66048341-66048360 MsG0780039573.01.T01:five_prime_UTR 45.0%
GAAAGGTCCTACAACAAAGG+TGG + Chr7:66045346-66045365 None:intergenic 45.0%
GAGAGAAAATTGGTATCCCG+TGG + Chr7:66047731-66047750 None:intergenic 45.0%
GCCTGTGAGGACTAAAAACA+GGG + Chr7:66047638-66047657 None:intergenic 45.0%
GTACAGGGTTTCTTGGTTCA+TGG - Chr7:66048366-66048385 MsG0780039573.01.T01:five_prime_UTR 45.0%
GTCCTCACAGGCATAAAGAT+AGG - Chr7:66047646-66047665 MsG0780039573.01.T01:intron 45.0%
GTTTCCCATTGGTACGTTCT+TGG - Chr7:66045427-66045446 MsG0780039573.01.T01:intron 45.0%
TAGTCGGTGGAGAAAGATAG+AGG + Chr7:66046756-66046775 None:intergenic 45.0%
TCCGCTCCTCTTATGACAAA+AGG - Chr7:66046061-66046080 MsG0780039573.01.T01:intron 45.0%
TGAACAGATCCAGGTAGCTT+AGG + Chr7:66045375-66045394 None:intergenic 45.0%
TGCCTGTGAGGACTAAAAAC+AGG + Chr7:66047639-66047658 None:intergenic 45.0%
! AAGCCTTTTGCTTGGTCGTA+TGG - Chr7:66045245-66045264 MsG0780039573.01.T01:intron 45.0%
! ACTGGAGGTACAGGGTTTAT+TGG - Chr7:66042743-66042762 MsG0780039573.01.T01:intron 45.0%
! ATCTCTAGAGAGCTTATCGG+AGG - Chr7:66045807-66045826 MsG0780039573.01.T01:intron 45.0%
! GTATGGTGCATGTGATGATG+TGG - Chr7:66045549-66045568 MsG0780039573.01.T01:intron 45.0%
! GTGTTAATAGTGTCGGACAC+CGG - Chr7:66044640-66044659 MsG0780039573.01.T01:intron 45.0%
! TCAGGGTACTTGGAGAAACA+AGG + Chr7:66045665-66045684 None:intergenic 45.0%
! TGCATGTGATGATGTGGCTA+GGG - Chr7:66045555-66045574 MsG0780039573.01.T01:intron 45.0%
! TTTGTGTGACTGGAGGTACA+GGG - Chr7:66042735-66042754 MsG0780039573.01.T01:intron 45.0%
!! AATGGATTGGTCATGTGGCA+AGG + Chr7:66046426-66046445 None:intergenic 45.0%
!! ATACACAGCAGAAGCACTTG+AGG + Chr7:66045157-66045176 None:intergenic 45.0%
!! ATGGATTGGTCATGTGGCAA+GGG + Chr7:66046425-66046444 None:intergenic 45.0%
!! CCAACAATGGATTGGTCATG+TGG + Chr7:66046431-66046450 None:intergenic 45.0%
!!! GGTGAGGCACAATTTTTTCG+CGG + Chr7:66047593-66047612 None:intergenic 45.0%
!! ATATTTCTTAAAAAATATAT+TGG + Chr7:66044218-66044237 None:intergenic 5.0%
!! TATTTCTTAAAAAATATATT+GGG + Chr7:66044217-66044236 None:intergenic 5.0%
ACCACTGTTAGAGCTGATCC+AGG - Chr7:66042812-66042831 MsG0780039573.01.T01:intron 50.0%
ACCTGGATGAACTCTAACGG+TGG + Chr7:66048432-66048451 None:intergenic 50.0%
ACTAAAAACAGGGGCGGATC+TGG + Chr7:66047628-66047647 None:intergenic 50.0%
AGGAAGAGTTGTGTGACTGG+AGG - Chr7:66048344-66048363 MsG0780039573.01.T01:five_prime_UTR 50.0%
GGAAGAGTTTGTGTGACTGG+AGG - Chr7:66042728-66042747 MsG0780039573.01.T01:CDS 50.0%
GTCATGTCAGGTGTCTACGT+CGG + Chr7:66044277-66044296 None:intergenic 50.0%
GTGAGGACTAAAAACAGGGG+CGG + Chr7:66047634-66047653 None:intergenic 50.0%
TATGGAGCACGGACATCTCT+AGG + Chr7:66044755-66044774 None:intergenic 50.0%
TGGTCATGTGGCAAGGGATT+GGG + Chr7:66046419-66046438 None:intergenic 50.0%
TTACAGTCAATCGACCCGTG+CGG - Chr7:66047771-66047790 MsG0780039573.01.T01:intron 50.0%
TTGGTCATGTGGCAAGGGAT+TGG + Chr7:66046420-66046439 None:intergenic 50.0%
! ACCTGGATCAGCTCTAACAG+TGG + Chr7:66042816-66042835 None:intergenic 50.0%
! ACTGGAGGTACAGGGTTTCT+TGG - Chr7:66048359-66048378 MsG0780039573.01.T01:five_prime_UTR 50.0%
! AGTTGTGTGACTGGAGGTAC+AGG - Chr7:66048350-66048369 MsG0780039573.01.T01:five_prime_UTR 50.0%
! ATACGGCTTTATAGCCGCAC+GGG + Chr7:66047788-66047807 None:intergenic 50.0%
! GATACGGCTTTATAGCCGCA+CGG + Chr7:66047789-66047808 None:intergenic 50.0%
! GCAGCAATTGAAGGGTGCAT+TGG - Chr7:66044995-66045014 MsG0780039573.01.T01:intron 50.0%
! GCTTGTATCTCGTACCGGTA+TGG - Chr7:66045532-66045551 MsG0780039573.01.T01:intron 50.0%
! GTACGAGTGTCATTGGTGTC+AGG - Chr7:66044711-66044730 MsG0780039573.01.T01:intron 50.0%
! GTGCATGTGATGATGTGGCT+AGG - Chr7:66045554-66045573 MsG0780039573.01.T01:intron 50.0%
! GTTGTGTGACTGGAGGTACA+GGG - Chr7:66048351-66048370 MsG0780039573.01.T01:five_prime_UTR 50.0%
! GTTTGTGTGACTGGAGGTAC+AGG - Chr7:66042734-66042753 MsG0780039573.01.T01:intron 50.0%
! TGGTGTCAACGTGTCTGTGT+CGG + Chr7:66044301-66044320 None:intergenic 50.0%
!! CTCTAGGATTACACGTGTCG+CGG + Chr7:66044739-66044758 None:intergenic 50.0%
!!! CCCCTGTTTTTAGTCCTCAC+AGG - Chr7:66047634-66047653 MsG0780039573.01.T01:intron 50.0%
GCCACCGTTAGAGTTCATCC+AGG - Chr7:66048428-66048447 MsG0780039573.01.T01:five_prime_UTR 55.0%
!! GTCTGTGTCGGTGTCATGTC+AGG + Chr7:66044289-66044308 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr7 gene 66042550 66048457 66042550 ID=MsG0780039573.01;Name=MsG0780039573.01
Chr7 mRNA 66042550 66048457 66042550 ID=MsG0780039573.01.T01;Parent=MsG0780039573.01;Name=MsG0780039573.01.T01;_AED=0.53;_eAED=0.53;_QI=163|0|0.5|1|0|0|2|0|106
Chr7 exon 66042550 66042749 66042550 ID=MsG0780039573.01.T01:exon:17959;Parent=MsG0780039573.01.T01
Chr7 exon 66048174 66048457 66048174 ID=MsG0780039573.01.T01:exon:17958;Parent=MsG0780039573.01.T01
Chr7 five_prime_UTR 66048295 66048457 66048295 ID=MsG0780039573.01.T01:five_prime_utr;Parent=MsG0780039573.01.T01
Chr7 CDS 66048174 66048294 66048174 ID=MsG0780039573.01.T01:cds;Parent=MsG0780039573.01.T01
Chr7 CDS 66042550 66042749 66042550 ID=MsG0780039573.01.T01:cds;Parent=MsG0780039573.01.T01
Gene Sequence

>MsG0780039573.01.T01

ATGGAAGAAGAGAAAGGAAGAGTTTGTGTGACTGGAGGTACAGGGTTTATTGGTTCATGGATTATTAAGAGACTCCTTGAAGATGGTTACGCTGTTAATACCACTGTTAGAGCTGATCCAGGAAGAACCAACAAAATAGAAGTAGAAGAAAAAGGAAAAAGATTAAGCAAAACCACAAAGGAAGAGTGTGGTAATGGAAGAAGAGAAAGGAAGAGTTGTGTGACTGGAGGTACAGGGTTTCTTGGTTCATGGATTATTAAGAGACTTCTTGAAGATGGTTACACTGTTAATGCCACCGTTAGAGTTCATCCAGGTCAGTAA

Protein sequence

>MsG0780039573.01.T01

MEEEKGRVCVTGGTGFIGSWIIKRLLEDGYAVNTTVRADPGRTNKIEVEEKGKRLSKTTKEECGNGRRERKSCVTGGTGFLGSWIIKRLLEDGYTVNATVRVHPGQ*