Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020538.01.T01 | XP_003606113.1 | 98.571 | 420 | 6 | 0 | 21 | 440 | 1 | 420 | 0 | 848 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020538.01.T01 | Q9ZW88 | 72.315 | 419 | 116 | 0 | 22 | 440 | 1 | 419 | 0 | 608 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020538.01.T01 | G7JIE1 | 98.571 | 420 | 6 | 0 | 21 | 440 | 1 | 420 | 0.0 | 848 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0480020538.01 | MsG0880042368.01 | 0.814362 | 1.601522e-51 | 1.072372e-48 |
| MsG0380015245.01 | MsG0480020538.01 | 0.807645 | 4.568328e-50 | 2.558141e-47 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020538.01.T01 | MTR_4g053260 | 98.571 | 420 | 6 | 0 | 21 | 440 | 1 | 420 | 0.0 | 848 |
| MsG0480020538.01.T01 | MTR_1g060040 | 66.826 | 419 | 139 | 0 | 22 | 440 | 1 | 419 | 0.0 | 546 |
| MsG0480020538.01.T01 | MTR_7g104490 | 63.484 | 419 | 153 | 0 | 22 | 440 | 1 | 419 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020538.01.T01 | AT1G67190 | 72.315 | 419 | 116 | 0 | 22 | 440 | 1 | 419 | 0.0 | 608 |
| MsG0480020538.01.T01 | AT1G67190 | 72.315 | 419 | 116 | 0 | 22 | 440 | 1 | 419 | 0.0 | 608 |
Find 92 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATCATCTGGTAAAATTT+TGG | 0.172000 | 4:-43027790 | None:intergenic |
| TGAGGATGAGGTTGTGGATT+TGG | 0.254844 | 4:+43027864 | MsG0480020538.01.T01:CDS |
| CAGTTTGGACAAGTTTATAT+TGG | 0.269366 | 4:+43027588 | MsG0480020538.01.T01:CDS |
| TCTGGAGAATGTTGTTGTTT+TGG | 0.290641 | 4:+43027984 | MsG0480020538.01.T01:CDS |
| ATCGACATCTTCCATCAAAA+TGG | 0.308813 | 4:-43027194 | None:intergenic |
| AACCATGGATGTGGTGAAAT+TGG | 0.318949 | 4:-43028145 | None:intergenic |
| TTTAAAGAGGCTTAGGCTTT+GGG | 0.320285 | 4:+43027825 | MsG0480020538.01.T01:CDS |
| ATTTAAAGAGGCTTAGGCTT+TGG | 0.321881 | 4:+43027824 | MsG0480020538.01.T01:CDS |
| CAGCTTCCTGTTGAAGTGAT+TGG | 0.330061 | 4:+43026965 | MsG0480020538.01.T01:CDS |
| CACGGAAACCTCTGATAATT+CGG | 0.345988 | 4:-43027385 | None:intergenic |
| TAAGCTGGAAGTACTTGATT+TGG | 0.354707 | 4:+43027336 | MsG0480020538.01.T01:CDS |
| TGACTAGTTTCTTGAGAATA+GGG | 0.359514 | 4:-43028071 | None:intergenic |
| CTTCAAATTTAAAGAGGCTT+AGG | 0.375452 | 4:+43027818 | MsG0480020538.01.T01:CDS |
| TGCGTTGGATTTGAGTCTTT+TGG | 0.381205 | 4:+43027444 | MsG0480020538.01.T01:CDS |
| CGGCGTCTGCTGTTATTGCT+TGG | 0.385178 | 4:+43027224 | MsG0480020538.01.T01:CDS |
| TTTACAAGGCTCTTCTCATC+TGG | 0.390921 | 4:+43027966 | MsG0480020538.01.T01:CDS |
| TATGCCGAATGTTAACATTC+TGG | 0.391323 | 4:+43027297 | MsG0480020538.01.T01:CDS |
| TGGAGCATAATTCCATTGTT+GGG | 0.394380 | 4:+43027356 | MsG0480020538.01.T01:CDS |
| AGCTTCCTGTTGAAGTGATT+GGG | 0.400824 | 4:+43026966 | MsG0480020538.01.T01:CDS |
| ATGACTAGTTTCTTGAGAAT+AGG | 0.400878 | 4:-43028072 | None:intergenic |
| TGTCCTTTAGCTCGAATGAT+TGG | 0.401648 | 4:+43027086 | MsG0480020538.01.T01:CDS |
| GTCGATCCTAAAATTCTTCA+AGG | 0.405823 | 4:-43027683 | None:intergenic |
| TTGGAGCATAATTCCATTGT+TGG | 0.407591 | 4:+43027355 | MsG0480020538.01.T01:CDS |
| TCATGTTAAACTTGCAAATC+CGG | 0.418956 | 4:-43026937 | None:intergenic |
| AGCTTTGGAGCTTGTAAATC+CGG | 0.420803 | 4:+43027489 | MsG0480020538.01.T01:CDS |
| CGAGATCTTCAAATTTAAAG+AGG | 0.423208 | 4:+43027812 | MsG0480020538.01.T01:CDS |
| TCAGCAACTTCACAATCATT+TGG | 0.423879 | 4:+43027767 | MsG0480020538.01.T01:CDS |
| ATGTTCCCAATCACTTCAAC+AGG | 0.428833 | 4:-43026971 | None:intergenic |
| GTGTCCGAGGATTGAAGCTT+TGG | 0.433033 | 4:+43027474 | MsG0480020538.01.T01:CDS |
| TAAGCAGCCCCTCGACCCAC+TGG | 0.433128 | 4:-43028041 | None:intergenic |
| TTAACATTCTGGAGATTTGT+GGG | 0.446810 | 4:+43027308 | MsG0480020538.01.T01:CDS |
| CCTCGGCAACATGCAAGAAA+TGG | 0.450786 | 4:+43027032 | MsG0480020538.01.T01:CDS |
| TTGAAGATCTCGAAATCATC+TGG | 0.455138 | 4:-43027801 | None:intergenic |
| ATCTCCAGAATGTTAACATT+CGG | 0.457841 | 4:-43027301 | None:intergenic |
| GTTAACATTCTGGAGATTTG+TGG | 0.459161 | 4:+43027307 | MsG0480020538.01.T01:CDS |
| CGACCAATCATTCGAGCTAA+AGG | 0.471782 | 4:-43027089 | None:intergenic |
| TTATGTTGAAGCAATCAGTT+TGG | 0.472225 | 4:+43027573 | MsG0480020538.01.T01:CDS |
| TTTGGACAAGTTTATATTGG+AGG | 0.477597 | 4:+43027591 | MsG0480020538.01.T01:CDS |
| GCATCAGACATTGCAATCTC+CGG | 0.479437 | 4:-43027508 | None:intergenic |
| CATCCCTTGCAGCCTTGAGA+TGG | 0.484957 | 4:-43027000 | None:intergenic |
| AGAGATGGAGTGCTTCACTA+TGG | 0.486501 | 4:+43027943 | MsG0480020538.01.T01:CDS |
| CTCAAGAAACTAGTCATTCA+CGG | 0.489176 | 4:+43028078 | MsG0480020538.01.T01:CDS |
| CGATGATGAGGATGAGGTTG+TGG | 0.494586 | 4:+43027858 | MsG0480020538.01.T01:CDS |
| AGCTCCAAAGCTTCAATCCT+CGG | 0.497092 | 4:-43027478 | None:intergenic |
| AAGTTTATATTGGAGGCTGA+TGG | 0.502708 | 4:+43027598 | MsG0480020538.01.T01:CDS |
| GGAAGATGTCGATGAATTCT+CGG | 0.502995 | 4:+43027204 | MsG0480020538.01.T01:CDS |
| GATTTGTGGGAGGCATAAGC+TGG | 0.505044 | 4:+43027321 | MsG0480020538.01.T01:CDS |
| GATTTGCAAGTTTAACATGA+TGG | 0.510882 | 4:+43026940 | MsG0480020538.01.T01:CDS |
| GTGCTTCACTATGGTTTACA+AGG | 0.514230 | 4:+43027952 | MsG0480020538.01.T01:CDS |
| CATTCACGGTGTTGTTTCCG+AGG | 0.515633 | 4:+43028092 | MsG0480020538.01.T01:CDS |
| TTGCTTGGCTTATGTACACC+AGG | 0.528196 | 4:+43027239 | MsG0480020538.01.T01:CDS |
| AGTTTATATTGGAGGCTGAT+GGG | 0.528821 | 4:+43027599 | MsG0480020538.01.T01:CDS |
| AGCCAATTTCACCACATCCA+TGG | 0.531036 | 4:+43028143 | MsG0480020538.01.T01:CDS |
| AGAGATAAATGACTCAGGTA+TGG | 0.532724 | 4:-43027907 | None:intergenic |
| CAATTGCCTCAGAGTCTCCC+TGG | 0.532959 | 4:-43027257 | None:intergenic |
| CCATTTCTTGCATGTTGCCG+AGG | 0.538491 | 4:-43027032 | None:intergenic |
| CATCAGCTCAACCATGGATG+TGG | 0.539794 | 4:-43028154 | None:intergenic |
| CATCCATGGTTGAGCTGATG+AGG | 0.541436 | 4:+43028157 | MsG0480020538.01.T01:CDS |
| ATCCCTTGCAGCCTTGAGAT+GGG | 0.542502 | 4:-43026999 | None:intergenic |
| ATCCCATCTCAAGGCTGCAA+GGG | 0.546912 | 4:+43026997 | MsG0480020538.01.T01:CDS |
| GGAGCATAATTCCATTGTTG+GGG | 0.547575 | 4:+43027357 | MsG0480020538.01.T01:CDS |
| TCTCAAGGCTGCAAGGGATG+TGG | 0.548007 | 4:+43027003 | MsG0480020538.01.T01:CDS |
| CTTTAGCTCGAATGATTGGT+CGG | 0.556087 | 4:+43027090 | MsG0480020538.01.T01:CDS |
| TATCCCATCTCAAGGCTGCA+AGG | 0.556217 | 4:+43026996 | MsG0480020538.01.T01:CDS |
| AAGCAGCCCCTCGACCCACT+GGG | 0.569654 | 4:-43028040 | None:intergenic |
| TGTGATCAAAATCTCAAGAC+GGG | 0.571900 | 4:-43027134 | None:intergenic |
| TTTGTATTGTGAAGTTGTGC+CGG | 0.573248 | 4:+43026918 | MsG0480020538.01.T01:CDS |
| GGTCGAGAATCTTGAGAGTG+TGG | 0.574858 | 4:+43027741 | MsG0480020538.01.T01:CDS |
| TTCTTCATCAGACTTAGCCT+CGG | 0.578132 | 4:-43028109 | None:intergenic |
| GGATGTGATGTTCGATGATG+AGG | 0.585532 | 4:+43027846 | MsG0480020538.01.T01:CDS |
| TTGTGTTAGTATATCTGCGT+TGG | 0.586686 | 4:+43027429 | MsG0480020538.01.T01:CDS |
| ATTCGGCTCAACCCCAACAA+TGG | 0.586694 | 4:-43027368 | None:intergenic |
| CTGAGTTATGATGTGAGAGA+TGG | 0.590837 | 4:+43027928 | MsG0480020538.01.T01:CDS |
| ACATCTTGACATTGGTGAGA+CGG | 0.597711 | 4:+43027720 | MsG0480020538.01.T01:CDS |
| AAGGGATGTGGTGATAGCCT+CGG | 0.602611 | 4:+43027015 | MsG0480020538.01.T01:CDS |
| TCTCCTCATCAGCTCAACCA+TGG | 0.619817 | 4:-43028160 | None:intergenic |
| AACTCAGAGATAAATGACTC+AGG | 0.621606 | 4:-43027912 | None:intergenic |
| AGTGTTATACATCTTGACAT+TGG | 0.622017 | 4:+43027712 | MsG0480020538.01.T01:CDS |
| GATTGCAATGTCTGATGCAA+TGG | 0.623873 | 4:+43027513 | MsG0480020538.01.T01:CDS |
| AATGGAAAGCGACTGCAACC+CGG | 0.628343 | 4:-43027176 | None:intergenic |
| GGGTTGAGCCGAATTATCAG+AGG | 0.628727 | 4:+43027377 | MsG0480020538.01.T01:CDS |
| AACGAAAGTGATTTCAAACA+CGG | 0.631215 | 4:-43027403 | None:intergenic |
| GTGTGATCAAAATCTCAAGA+CGG | 0.631778 | 4:-43027135 | None:intergenic |
| TCGAGCTAAAGGACAATGTG+TGG | 0.633617 | 4:-43027078 | None:intergenic |
| GATGTTCGATGATGAGGATG+AGG | 0.639465 | 4:+43027852 | MsG0480020538.01.T01:CDS |
| GACGGGTCGTTGACAAATCG+CGG | 0.651253 | 4:-43027117 | None:intergenic |
| GAACATACTATCCCATCTCA+AGG | 0.653061 | 4:+43026988 | MsG0480020538.01.T01:CDS |
| TGCTTGGCTTATGTACACCA+GGG | 0.664685 | 4:+43027240 | MsG0480020538.01.T01:CDS |
| ACTCAGGTATGGAAAGCAAG+TGG | 0.667455 | 4:-43027896 | None:intergenic |
| CGTCGAGCTACTCAATTCAA+CGG | 0.669195 | 4:-43027539 | None:intergenic |
| TGTACACCAGGGAGACTCTG+AGG | 0.674668 | 4:+43027251 | MsG0480020538.01.T01:CDS |
| ACATTCTGGAGATTTGTGGG+AGG | 0.676084 | 4:+43027311 | MsG0480020538.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAATCATCTGGTAAAATTT+TGG | - | Chr4:43027793-43027812 | None:intergenic | 25.0% |
| AACGAAAGTGATTTCAAACA+CGG | - | Chr4:43027406-43027425 | None:intergenic | 30.0% | |
| AGTGTTATACATCTTGACAT+TGG | + | Chr4:43027712-43027731 | MsG0480020538.01.T01:CDS | 30.0% | |
| ATCTCCAGAATGTTAACATT+CGG | - | Chr4:43027304-43027323 | None:intergenic | 30.0% | |
| CAGTTTGGACAAGTTTATAT+TGG | + | Chr4:43027588-43027607 | MsG0480020538.01.T01:CDS | 30.0% | |
| CGAGATCTTCAAATTTAAAG+AGG | + | Chr4:43027812-43027831 | MsG0480020538.01.T01:CDS | 30.0% | |
| CTTCAAATTTAAAGAGGCTT+AGG | + | Chr4:43027818-43027837 | MsG0480020538.01.T01:CDS | 30.0% | |
| GATTTGCAAGTTTAACATGA+TGG | + | Chr4:43026940-43026959 | MsG0480020538.01.T01:CDS | 30.0% | |
| TCATGTTAAACTTGCAAATC+CGG | - | Chr4:43026940-43026959 | None:intergenic | 30.0% | |
| TTATGTTGAAGCAATCAGTT+TGG | + | Chr4:43027573-43027592 | MsG0480020538.01.T01:CDS | 30.0% | |
| TTTGGACAAGTTTATATTGG+AGG | + | Chr4:43027591-43027610 | MsG0480020538.01.T01:CDS | 30.0% | |
| ! | CTTGAAGTTTTTGAACTCAT+TGG | + | Chr4:43027652-43027671 | MsG0480020538.01.T01:CDS | 30.0% |
| ! | TTAACATTCTGGAGATTTGT+GGG | + | Chr4:43027308-43027327 | MsG0480020538.01.T01:CDS | 30.0% |
| !! | ATGACTAGTTTCTTGAGAAT+AGG | - | Chr4:43028075-43028094 | None:intergenic | 30.0% |
| !! | TGACTAGTTTCTTGAGAATA+GGG | - | Chr4:43028074-43028093 | None:intergenic | 30.0% |
| AACTCAGAGATAAATGACTC+AGG | - | Chr4:43027915-43027934 | None:intergenic | 35.0% | |
| AAGTTTATATTGGAGGCTGA+TGG | + | Chr4:43027598-43027617 | MsG0480020538.01.T01:CDS | 35.0% | |
| AGAGATAAATGACTCAGGTA+TGG | - | Chr4:43027910-43027929 | None:intergenic | 35.0% | |
| AGTTTATATTGGAGGCTGAT+GGG | + | Chr4:43027599-43027618 | MsG0480020538.01.T01:CDS | 35.0% | |
| ATCGACATCTTCCATCAAAA+TGG | - | Chr4:43027197-43027216 | None:intergenic | 35.0% | |
| ATTTAAAGAGGCTTAGGCTT+TGG | + | Chr4:43027824-43027843 | MsG0480020538.01.T01:CDS | 35.0% | |
| CTCAAGAAACTAGTCATTCA+CGG | + | Chr4:43028078-43028097 | MsG0480020538.01.T01:CDS | 35.0% | |
| GTCGATCCTAAAATTCTTCA+AGG | - | Chr4:43027686-43027705 | None:intergenic | 35.0% | |
| GTGTGATCAAAATCTCAAGA+CGG | - | Chr4:43027138-43027157 | None:intergenic | 35.0% | |
| TATGCCGAATGTTAACATTC+TGG | + | Chr4:43027297-43027316 | MsG0480020538.01.T01:CDS | 35.0% | |
| TCAGCAACTTCACAATCATT+TGG | + | Chr4:43027767-43027786 | MsG0480020538.01.T01:CDS | 35.0% | |
| TGGAGCATAATTCCATTGTT+GGG | + | Chr4:43027356-43027375 | MsG0480020538.01.T01:CDS | 35.0% | |
| TGTGATCAAAATCTCAAGAC+GGG | - | Chr4:43027137-43027156 | None:intergenic | 35.0% | |
| TTGAAGATCTCGAAATCATC+TGG | - | Chr4:43027804-43027823 | None:intergenic | 35.0% | |
| TTGGAGCATAATTCCATTGT+TGG | + | Chr4:43027355-43027374 | MsG0480020538.01.T01:CDS | 35.0% | |
| TTGTGTTAGTATATCTGCGT+TGG | + | Chr4:43027429-43027448 | MsG0480020538.01.T01:CDS | 35.0% | |
| TTTAAAGAGGCTTAGGCTTT+GGG | + | Chr4:43027825-43027844 | MsG0480020538.01.T01:CDS | 35.0% | |
| TTTGTATTGTGAAGTTGTGC+CGG | + | Chr4:43026918-43026937 | MsG0480020538.01.T01:CDS | 35.0% | |
| ! | AGTTTTTGAACTCATTGGCA+AGG | + | Chr4:43027657-43027676 | MsG0480020538.01.T01:CDS | 35.0% |
| ! | GTTAACATTCTGGAGATTTG+TGG | + | Chr4:43027307-43027326 | MsG0480020538.01.T01:CDS | 35.0% |
| ! | GTTTTTGAACTCATTGGCAA+GGG | + | Chr4:43027658-43027677 | MsG0480020538.01.T01:CDS | 35.0% |
| ! | TAATGATCTTTTCTCCCAGT+GGG | + | Chr4:43028026-43028045 | MsG0480020538.01.T01:CDS | 35.0% |
| ! | TTAATGATCTTTTCTCCCAG+TGG | + | Chr4:43028025-43028044 | MsG0480020538.01.T01:CDS | 35.0% |
| ! | TTTTTGAACTCATTGGCAAG+GGG | + | Chr4:43027659-43027678 | MsG0480020538.01.T01:CDS | 35.0% |
| !! | AGACTATTTTTCAGACATCC+GGG | + | Chr4:43027158-43027177 | MsG0480020538.01.T01:CDS | 35.0% |
| !! | CAGACTATTTTTCAGACATC+CGG | + | Chr4:43027157-43027176 | MsG0480020538.01.T01:CDS | 35.0% |
| !! | TAAGCTGGAAGTACTTGATT+TGG | + | Chr4:43027336-43027355 | MsG0480020538.01.T01:CDS | 35.0% |
| !!! | AATGTTGTTGTTTTGGAGCT+TGG | + | Chr4:43027991-43028010 | MsG0480020538.01.T01:CDS | 35.0% |
| !!! | TCTGGAGAATGTTGTTGTTT+TGG | + | Chr4:43027984-43028003 | MsG0480020538.01.T01:CDS | 35.0% |
| AACCATGGATGTGGTGAAAT+TGG | - | Chr4:43028148-43028167 | None:intergenic | 40.0% | |
| ACATCTTGACATTGGTGAGA+CGG | + | Chr4:43027720-43027739 | MsG0480020538.01.T01:CDS | 40.0% | |
| AGCTTCCTGTTGAAGTGATT+GGG | + | Chr4:43026966-43026985 | MsG0480020538.01.T01:CDS | 40.0% | |
| ATGTTCCCAATCACTTCAAC+AGG | - | Chr4:43026974-43026993 | None:intergenic | 40.0% | |
| CACGGAAACCTCTGATAATT+CGG | - | Chr4:43027388-43027407 | None:intergenic | 40.0% | |
| CTGAGTTATGATGTGAGAGA+TGG | + | Chr4:43027928-43027947 | MsG0480020538.01.T01:CDS | 40.0% | |
| GAACATACTATCCCATCTCA+AGG | + | Chr4:43026988-43027007 | MsG0480020538.01.T01:CDS | 40.0% | |
| GATTGCAATGTCTGATGCAA+TGG | + | Chr4:43027513-43027532 | MsG0480020538.01.T01:CDS | 40.0% | |
| GGAAGATGTCGATGAATTCT+CGG | + | Chr4:43027204-43027223 | MsG0480020538.01.T01:CDS | 40.0% | |
| GGAGCATAATTCCATTGTTG+GGG | + | Chr4:43027357-43027376 | MsG0480020538.01.T01:CDS | 40.0% | |
| GTGCTTCACTATGGTTTACA+AGG | + | Chr4:43027952-43027971 | MsG0480020538.01.T01:CDS | 40.0% | |
| TTCTTCATCAGACTTAGCCT+CGG | - | Chr4:43028112-43028131 | None:intergenic | 40.0% | |
| TTTACAAGGCTCTTCTCATC+TGG | + | Chr4:43027966-43027985 | MsG0480020538.01.T01:CDS | 40.0% | |
| ! | AGGGGACCTTGAAGAATTTT+AGG | + | Chr4:43027677-43027696 | MsG0480020538.01.T01:CDS | 40.0% |
| ! | CTTTAGCTCGAATGATTGGT+CGG | + | Chr4:43027090-43027109 | MsG0480020538.01.T01:CDS | 40.0% |
| ! | TGCGTTGGATTTGAGTCTTT+TGG | + | Chr4:43027444-43027463 | MsG0480020538.01.T01:CDS | 40.0% |
| ! | TGTCCTTTAGCTCGAATGAT+TGG | + | Chr4:43027086-43027105 | MsG0480020538.01.T01:CDS | 40.0% |
| !! | AGCTTTGGAGCTTGTAAATC+CGG | + | Chr4:43027489-43027508 | MsG0480020538.01.T01:CDS | 40.0% |
| ACTCAGGTATGGAAAGCAAG+TGG | - | Chr4:43027899-43027918 | None:intergenic | 45.0% | |
| AGCCAATTTCACCACATCCA+TGG | + | Chr4:43028143-43028162 | MsG0480020538.01.T01:CDS | 45.0% | |
| AGCTCCAAAGCTTCAATCCT+CGG | - | Chr4:43027481-43027500 | None:intergenic | 45.0% | |
| CAGCTTCCTGTTGAAGTGAT+TGG | + | Chr4:43026965-43026984 | MsG0480020538.01.T01:CDS | 45.0% | |
| CGACCAATCATTCGAGCTAA+AGG | - | Chr4:43027092-43027111 | None:intergenic | 45.0% | |
| CGTCGAGCTACTCAATTCAA+CGG | - | Chr4:43027542-43027561 | None:intergenic | 45.0% | |
| GATGTTCGATGATGAGGATG+AGG | + | Chr4:43027852-43027871 | MsG0480020538.01.T01:CDS | 45.0% | |
| GCATCAGACATTGCAATCTC+CGG | - | Chr4:43027511-43027530 | None:intergenic | 45.0% | |
| GGATGTGATGTTCGATGATG+AGG | + | Chr4:43027846-43027865 | MsG0480020538.01.T01:CDS | 45.0% | |
| TCGAGCTAAAGGACAATGTG+TGG | - | Chr4:43027081-43027100 | None:intergenic | 45.0% | |
| TGAGGATGAGGTTGTGGATT+TGG | + | Chr4:43027864-43027883 | MsG0480020538.01.T01:CDS | 45.0% | |
| TGCTTGGCTTATGTACACCA+GGG | + | Chr4:43027240-43027259 | MsG0480020538.01.T01:CDS | 45.0% | |
| TTGCTTGGCTTATGTACACC+AGG | + | Chr4:43027239-43027258 | MsG0480020538.01.T01:CDS | 45.0% | |
| ! | ACATTCTGGAGATTTGTGGG+AGG | + | Chr4:43027311-43027330 | MsG0480020538.01.T01:CDS | 45.0% |
| ! | AGAGATGGAGTGCTTCACTA+TGG | + | Chr4:43027943-43027962 | MsG0480020538.01.T01:CDS | 45.0% |
| !! | GCAGTCGCTTTCCATTTTGA+TGG | + | Chr4:43027183-43027202 | MsG0480020538.01.T01:CDS | 45.0% |
| !!! | TTGTTGTTTTGGAGCTTGGC+TGG | + | Chr4:43027995-43028014 | MsG0480020538.01.T01:CDS | 45.0% |
| AAGGGATGTGGTGATAGCCT+CGG | + | Chr4:43027015-43027034 | MsG0480020538.01.T01:CDS | 50.0% | |
| AATGGAAAGCGACTGCAACC+CGG | - | Chr4:43027179-43027198 | None:intergenic | 50.0% | |
| ATCCCATCTCAAGGCTGCAA+GGG | + | Chr4:43026997-43027016 | MsG0480020538.01.T01:CDS | 50.0% | |
| ATCCCTTGCAGCCTTGAGAT+GGG | - | Chr4:43027002-43027021 | None:intergenic | 50.0% | |
| ATTCGGCTCAACCCCAACAA+TGG | - | Chr4:43027371-43027390 | None:intergenic | 50.0% | |
| CATCAGCTCAACCATGGATG+TGG | - | Chr4:43028157-43028176 | None:intergenic | 50.0% | |
| CATCCATGGTTGAGCTGATG+AGG | + | Chr4:43028157-43028176 | MsG0480020538.01.T01:CDS | 50.0% | |
| CCATTTCTTGCATGTTGCCG+AGG | - | Chr4:43027035-43027054 | None:intergenic | 50.0% | |
| CCTCGGCAACATGCAAGAAA+TGG | + | Chr4:43027032-43027051 | MsG0480020538.01.T01:CDS | 50.0% | |
| CGATGATGAGGATGAGGTTG+TGG | + | Chr4:43027858-43027877 | MsG0480020538.01.T01:CDS | 50.0% | |
| GGGTTGAGCCGAATTATCAG+AGG | + | Chr4:43027377-43027396 | MsG0480020538.01.T01:CDS | 50.0% | |
| GGTCGAGAATCTTGAGAGTG+TGG | + | Chr4:43027741-43027760 | MsG0480020538.01.T01:CDS | 50.0% | |
| GTGTCCGAGGATTGAAGCTT+TGG | + | Chr4:43027474-43027493 | MsG0480020538.01.T01:CDS | 50.0% | |
| TATCCCATCTCAAGGCTGCA+AGG | + | Chr4:43026996-43027015 | MsG0480020538.01.T01:CDS | 50.0% | |
| TCTCCTCATCAGCTCAACCA+TGG | - | Chr4:43028163-43028182 | None:intergenic | 50.0% | |
| ! | GATTTGTGGGAGGCATAAGC+TGG | + | Chr4:43027321-43027340 | MsG0480020538.01.T01:CDS | 50.0% |
| !! | CATTCACGGTGTTGTTTCCG+AGG | + | Chr4:43028092-43028111 | MsG0480020538.01.T01:CDS | 50.0% |
| CAATTGCCTCAGAGTCTCCC+TGG | - | Chr4:43027260-43027279 | None:intergenic | 55.0% | |
| CATCCCTTGCAGCCTTGAGA+TGG | - | Chr4:43027003-43027022 | None:intergenic | 55.0% | |
| CGGCGTCTGCTGTTATTGCT+TGG | + | Chr4:43027224-43027243 | MsG0480020538.01.T01:CDS | 55.0% | |
| GACGGGTCGTTGACAAATCG+CGG | - | Chr4:43027120-43027139 | None:intergenic | 55.0% | |
| TCTCAAGGCTGCAAGGGATG+TGG | + | Chr4:43027003-43027022 | MsG0480020538.01.T01:CDS | 55.0% | |
| TGTACACCAGGGAGACTCTG+AGG | + | Chr4:43027251-43027270 | MsG0480020538.01.T01:CDS | 55.0% | |
| ! | CTTTTCTCCCAGTGGGTCGA+GGG | + | Chr4:43028033-43028052 | MsG0480020538.01.T01:CDS | 55.0% |
| ! | TCTTTTCTCCCAGTGGGTCG+AGG | + | Chr4:43028032-43028051 | MsG0480020538.01.T01:CDS | 55.0% |
| ! | TTTTCTCCCAGTGGGTCGAG+GGG | + | Chr4:43028034-43028053 | MsG0480020538.01.T01:CDS | 55.0% |
| !!! | TTTTGGTGTCTGCGTGTCCG+AGG | + | Chr4:43027461-43027480 | MsG0480020538.01.T01:CDS | 55.0% |
| AAGCAGCCCCTCGACCCACT+GGG | - | Chr4:43028043-43028062 | None:intergenic | 65.0% | |
| TAAGCAGCCCCTCGACCCAC+TGG | - | Chr4:43028044-43028063 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 43026896 | 43028218 | 43026896 | ID=MsG0480020538.01;Name=MsG0480020538.01 |
| Chr4 | mRNA | 43026896 | 43028218 | 43026896 | ID=MsG0480020538.01.T01;Parent=MsG0480020538.01;Name=MsG0480020538.01.T01;_AED=0.13;_eAED=0.13;_QI=0|-1|0|1|-1|1|1|0|440 |
| Chr4 | exon | 43026896 | 43028218 | 43026896 | ID=MsG0480020538.01.T01:exon:5142;Parent=MsG0480020538.01.T01 |
| Chr4 | CDS | 43026896 | 43028218 | 43026896 | ID=MsG0480020538.01.T01:cds;Parent=MsG0480020538.01.T01 |
| Gene Sequence |
| Protein sequence |
