AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038497.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038497.01.T01 MTR_7g115270 52.113 355 108 4 3 296 46 399 4.61e-108 320
MsG0780038497.01.T01 MTR_7g056420 59.375 320 98 7 3 293 43 359 9.74e-102 321
MsG0780038497.01.T01 MTR_7g056430 59.375 320 98 7 3 293 43 359 2.75e-101 321
MsG0780038497.01.T01 MTR_5g013500 50.301 332 123 9 9 299 35 365 3.71e-95 285
MsG0780038497.01.T01 MTR_7g056433 43.275 342 135 5 11 299 54 389 4.74e-79 245
MsG0780038497.01.T01 MTR_7g033915 39.759 332 152 8 3 298 45 364 3.28e-63 204
MsG0780038497.01.T01 MTR_7g032370 37.015 335 167 9 3 299 24 352 3.47e-62 201
MsG0780038497.01.T01 MTR_7g032380 38.037 326 159 10 3 299 45 356 3.16e-60 196
MsG0780038497.01.T01 MTR_7g098510 37.216 352 142 10 9 299 58 391 2.91e-57 189
MsG0780038497.01.T01 MTR_1g041245 36.517 356 153 9 3 299 45 386 5.04e-57 188
MsG0780038497.01.T01 MTR_7g056417 59.494 158 15 2 78 186 1 158 4.50e-53 171
MsG0780038497.01.T01 MTR_7g033990 35.072 345 158 9 3 293 45 377 1.32e-49 170
MsG0780038497.01.T01 MTR_5g012840 35.350 314 156 9 9 299 29 318 2.22e-48 164
MsG0780038497.01.T01 MTR_7g088260 34.831 356 157 11 2 299 124 462 5.18e-48 167
MsG0780038497.01.T01 MTR_7g034115 34.718 337 168 11 2 291 44 375 5.67e-47 162
MsG0780038497.01.T01 MTR_0543s0010 32.948 346 168 9 2 298 119 449 3.18e-45 159
MsG0780038497.01.T01 MTR_3g108560 32.184 348 173 7 2 298 53 388 1.08e-44 156
MsG0780038497.01.T01 MTR_7g098480 35.072 345 155 9 9 298 58 388 1.75e-44 157
MsG0780038497.01.T01 MTR_7g098570 34.821 336 162 8 9 294 60 388 1.48e-43 155
MsG0780038497.01.T01 MTR_0492s0020 32.530 332 160 9 2 284 119 435 2.67e-42 151
MsG0780038497.01.T01 MTR_3g036250 32.670 352 154 9 2 296 38 363 6.98e-42 148
MsG0780038497.01.T01 MTR_3g023630 32.635 334 174 11 9 299 48 373 2.53e-40 144
MsG0780038497.01.T01 MTR_7g114710 36.562 320 166 13 9 299 53 364 1.35e-39 142
MsG0780038497.01.T01 MTR_3g082890 32.571 350 146 11 25 299 150 484 5.02e-39 143
MsG0780038497.01.T01 MTR_3g108150 31.549 355 171 9 2 298 46 386 4.23e-38 139
MsG0780038497.01.T01 MTR_8g085430 33.000 300 154 10 3 285 45 314 8.80e-38 137
MsG0780038497.01.T01 MTR_7g081290 52.206 136 55 4 169 299 126 256 1.29e-36 131
MsG0780038497.01.T01 MTR_3g040700 31.657 338 144 9 2 281 76 384 2.61e-36 135
MsG0780038497.01.T01 MTR_2g020180 38.889 216 109 6 93 299 14 215 3.41e-36 129
MsG0780038497.01.T01 MTR_7g034120 37.736 212 115 7 88 299 114 308 8.23e-35 128
MsG0780038497.01.T01 MTR_3g467400 30.707 368 133 9 10 299 44 367 2.79e-34 128
MsG0780038497.01.T01 MTR_3g087260 37.900 219 114 5 88 298 252 456 1.93e-33 127
MsG0780038497.01.T01 MTR_7g034110 32.155 283 160 8 2 267 44 311 2.75e-33 125
MsG0780038497.01.T01 MTR_3g115430 53.509 114 49 2 186 299 16 125 8.91e-33 117
MsG0780038497.01.T01 MTR_3g082890 30.052 386 145 12 25 299 70 441 2.88e-32 124
MsG0780038497.01.T01 MTR_5g008920 30.088 339 172 10 13 299 56 381 9.19e-31 119
MsG0780038497.01.T01 MTR_3g105060 30.145 345 176 12 2 299 47 373 3.95e-30 117
MsG0780038497.01.T01 MTR_5g008950 27.164 335 182 11 14 299 44 365 8.16e-27 108
MsG0780038497.01.T01 MTR_1g053025 31.295 278 144 13 37 297 140 387 9.11e-27 108
MsG0780038497.01.T01 MTR_2g007450 28.142 366 155 16 24 299 74 421 4.60e-26 107
MsG0780038497.01.T01 MTR_7g022060 57.143 91 38 1 209 299 240 329 4.67e-26 105
MsG0780038497.01.T01 MTR_7g083740 30.769 221 124 8 88 298 165 366 1.33e-25 105
MsG0780038497.01.T01 MTR_7g007080 34.722 216 116 7 88 296 179 376 9.06e-25 102
MsG0780038497.01.T01 MTR_7g021930 56.044 91 39 1 209 299 240 329 1.42e-24 101
MsG0780038497.01.T01 MTR_7g021970 56.044 91 39 1 209 299 240 329 1.42e-24 101
MsG0780038497.01.T01 MTR_3g109982 36.275 204 116 5 87 286 269 462 2.27e-24 103
MsG0780038497.01.T01 MTR_4g080610 28.750 320 181 11 10 298 53 356 4.97e-24 100
MsG0780038497.01.T01 MTR_1g043170 51.648 91 41 1 209 299 1 88 7.24e-24 93.2
MsG0780038497.01.T01 MTR_3g107100 33.032 221 129 6 88 296 182 395 7.32e-24 100
MsG0780038497.01.T01 MTR_7g056447 57.143 91 38 1 2 91 42 132 1.51e-23 97.8
MsG0780038497.01.T01 MTR_7g056277 32.243 214 129 7 86 298 429 627 8.13e-23 99.0
MsG0780038497.01.T01 MTR_7g056287 31.776 214 130 7 86 298 173 371 1.44e-21 94.0
MsG0780038497.01.T01 MTR_7g060470 33.040 227 118 13 92 298 180 392 1.48e-21 94.0
MsG0780038497.01.T01 MTR_1g107385 34.389 221 113 10 88 296 220 420 3.08e-21 93.2
MsG0780038497.01.T01 MTR_6g022500 25.948 343 187 12 10 296 142 473 6.53e-21 92.8
MsG0780038497.01.T01 MTR_7g026500 24.438 356 184 10 11 298 56 394 7.32e-21 92.0
MsG0780038497.01.T01 MTR_6g045333 26.126 333 190 9 19 298 116 445 1.22e-20 91.7
MsG0780038497.01.T01 MTR_3g071850 25.287 348 205 9 3 295 58 405 4.60e-20 90.9
MsG0780038497.01.T01 MTR_7g056020 41.353 133 68 3 169 293 238 368 1.44e-19 89.4
MsG0780038497.01.T01 MTR_7g034090 28.803 309 158 12 10 298 45 311 3.71e-19 87.4
MsG0780038497.01.T01 MTR_3g107120 29.032 217 132 6 88 299 192 391 1.36e-18 85.5
MsG0780038497.01.T01 MTR_3g107160 32.110 218 124 8 88 299 184 383 1.48e-18 85.5
MsG0780038497.01.T01 MTR_3g107940 39.098 133 59 4 169 293 89 207 2.54e-18 84.3
MsG0780038497.01.T01 MTR_5g063950 26.623 308 172 8 39 298 60 361 3.83e-18 84.0
MsG0780038497.01.T01 MTR_2g007550 30.272 294 145 16 28 297 76 333 8.00e-18 82.8
MsG0780038497.01.T01 MTR_3g026920 28.634 227 120 9 92 299 202 405 8.53e-18 83.2
MsG0780038497.01.T01 MTR_7g033945 48.684 76 39 0 3 78 45 120 9.39e-18 79.7
MsG0780038497.01.T01 MTR_5g045170 25.974 308 176 9 39 296 83 388 9.68e-18 83.2
MsG0780038497.01.T01 MTR_1g066830 26.724 348 186 16 10 298 49 386 1.02e-17 82.8
MsG0780038497.01.T01 MTR_4g096730 48.780 82 37 2 219 299 12 89 1.07e-17 77.4
MsG0780038497.01.T01 MTR_4g039440 27.059 340 170 10 24 299 87 412 1.67e-17 82.4
MsG0780038497.01.T01 MTR_5g058100 25.581 344 191 10 10 298 50 383 1.71e-17 82.4
MsG0780038497.01.T01 MTR_3g113785 48.101 79 34 1 185 256 14 92 5.60e-17 75.1
MsG0780038497.01.T01 MTR_3g108140 46.914 81 43 0 218 298 67 147 5.88e-17 77.4
MsG0780038497.01.T01 MTR_3g106960 34.270 178 96 7 101 266 3 171 1.14e-16 78.2
MsG0780038497.01.T01 MTR_6g040270 26.316 342 199 13 3 296 42 378 1.17e-16 79.7
MsG0780038497.01.T01 MTR_7g033940 47.436 78 41 0 3 80 128 205 1.18e-16 77.8
MsG0780038497.01.T01 MTR_7g055943 31.390 223 122 8 92 299 215 421 1.48e-16 79.7
MsG0780038497.01.T01 MTR_4g134150 46.667 90 45 2 3 91 44 131 1.57e-16 77.4
MsG0780038497.01.T01 MTR_1089s0010 26.074 349 195 17 3 299 42 379 4.69e-16 78.2
MsG0780038497.01.T01 MTR_2g008320 28.571 217 136 6 88 299 225 427 5.17e-16 78.2
MsG0780038497.01.T01 MTR_1g085120 23.647 351 197 11 9 299 132 471 1.89e-15 76.6
MsG0780038497.01.T01 MTR_1g085120 23.647 351 197 11 9 299 207 546 2.02e-15 76.6
MsG0780038497.01.T01 MTR_5g073420 27.164 335 189 14 11 298 53 379 2.77e-15 75.9
MsG0780038497.01.T01 MTR_6g022520 29.091 220 132 5 90 298 106 312 3.27e-15 75.1
MsG0780038497.01.T01 MTR_7g075820 28.972 214 127 9 88 296 198 391 5.01e-15 75.1
MsG0780038497.01.T01 MTR_8g077460 27.917 240 143 9 69 299 157 375 5.04e-15 75.1
MsG0780038497.01.T01 MTR_8g014210 27.234 235 110 8 97 299 26 231 1.36e-14 72.0
MsG0780038497.01.T01 MTR_6g029350 29.302 215 117 8 92 296 6 195 1.91e-14 71.6
MsG0780038497.01.T01 MTR_7g056280 29.018 224 130 7 87 298 366 572 2.40e-14 73.6
MsG0780038497.01.T01 MTR_5g045510 24.779 339 181 10 10 296 53 369 2.55e-14 72.8
MsG0780038497.01.T01 MTR_5g054920 26.500 200 123 6 90 281 8 191 3.22e-14 70.1
MsG0780038497.01.T01 MTR_8g058970 35.088 114 70 2 189 299 365 477 5.24e-14 72.4
MsG0780038497.01.T01 MTR_1g108800 32.057 209 125 8 92 296 144 339 9.05e-14 71.2
MsG0780038497.01.T01 MTR_6g022360 26.941 219 136 5 90 298 203 407 1.11e-13 71.2
MsG0780038497.01.T01 MTR_5g008910 26.786 280 156 10 58 299 34 302 1.22e-13 70.5
MsG0780038497.01.T01 MTR_2g005990 28.636 220 121 9 92 296 194 392 2.60e-13 70.1
MsG0780038497.01.T01 MTR_5g083890 30.729 192 111 8 88 268 196 376 4.89e-13 69.7
MsG0780038497.01.T01 MTR_5g039450 24.012 329 188 11 11 297 48 356 5.80e-13 68.9
MsG0780038497.01.T01 MTR_5g007410 23.876 356 201 11 3 297 60 406 1.17e-12 68.2
MsG0780038497.01.T01 MTR_4g098590 29.474 190 105 7 93 270 186 358 2.80e-12 67.0
MsG0780038497.01.T01 MTR_2g008310 27.442 215 139 7 88 299 171 371 3.46e-12 66.6
MsG0780038497.01.T01 MTR_8g014260 33.088 136 76 4 169 299 326 451 4.01e-12 66.6
MsG0780038497.01.T01 MTR_7g007340 28.241 216 124 9 86 293 159 351 7.05e-12 65.9
MsG0780038497.01.T01 MTR_3g094980 34.444 90 55 1 187 272 34 123 1.45e-11 62.4
MsG0780038497.01.T01 MTR_2g007360 24.091 220 139 7 92 296 165 371 1.71e-11 64.7
MsG0780038497.01.T01 MTR_3g099830 24.790 238 144 8 71 296 157 371 2.26e-11 64.3
MsG0780038497.01.T01 MTR_8g062310 35.714 112 68 3 190 299 319 428 2.36e-11 64.3
MsG0780038497.01.T01 MTR_8g014230 40.000 90 52 2 210 299 17 104 2.96e-11 59.7
MsG0780038497.01.T01 MTR_8g014160 35.455 110 70 1 190 299 317 425 5.92e-11 63.2
MsG0780038497.01.T01 MTR_8g062010 28.472 144 100 1 156 299 290 430 6.73e-11 62.8
MsG0780038497.01.T01 MTR_2g036470 24.757 206 151 3 92 296 191 393 7.66e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 60 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAAAATATGCTTGCTTAA+AGG 0.196455 7:+47696846 MsG0780038497.01.T01:CDS
ATGCTAGCTTTGATCAAATT+TGG 0.206197 7:-47696277 None:intergenic
AAGCTAGTTTCATCAAAATT+TGG 0.219029 7:-47696983 None:intergenic
CTCATTTGTTCAAAGGCTTC+TGG 0.230169 7:+47695888 MsG0780038497.01.T01:CDS
AAGAGGAAGTCGTGGATAAT+TGG 0.244941 7:+47696784 MsG0780038497.01.T01:CDS
CAAAGAGATGGAACCCATTA+TGG 0.279678 7:+47695746 None:intergenic
AGTTGTGTTGAAAGGCATTC+TGG 0.307205 7:-47696825 None:intergenic
ATCTTCTTATTTGACGAATC+TGG 0.308182 7:+47696306 MsG0780038497.01.T01:CDS
TTATTTGATTGATGAAAGTT+AGG 0.330438 7:+47697038 MsG0780038497.01.T01:exon
CATGGTAAAATGTTGAAGTT+TGG 0.349393 7:-47696651 None:intergenic
AACAAGACTGATAGCCATAA+TGG 0.356736 7:-47695760 None:intergenic
GAAAGACAGAGTACACAAAA+TGG 0.376320 7:-47695827 None:intergenic
TGCTTGCAATTCCTCGAGAA+TGG 0.376364 7:-47696173 None:intergenic
TTTCATCAAAATTTGGTACT+TGG 0.400290 7:-47696976 None:intergenic
AGAGGAAGTCGTGGATAATT+GGG 0.407553 7:+47696785 MsG0780038497.01.T01:CDS
TTGCAACAGAATAGGATTAT+CGG 0.411696 7:+47696527 MsG0780038497.01.T01:intron
TTGAAAATTAAATGTTATAG+AGG 0.411841 7:-47697166 None:intergenic
CTTAATGATAAGCTCTATGT+TGG 0.440855 7:-47696576 None:intergenic
GCTTGCAATTCCTCGAGAAT+GGG 0.448683 7:-47696172 None:intergenic
TGCCGGGCATTTCAAGATTG+AGG 0.460515 7:-47695971 None:intergenic
ATGGTAAAATGTTGAAGTTT+GGG 0.465555 7:-47696650 None:intergenic
AGAATAATCATCGTGATAAG+TGG 0.466113 7:+47696597 MsG0780038497.01.T01:CDS
ACAAGACTGATAGCCATAAT+GGG 0.471882 7:-47695759 None:intergenic
TCTCTTCTGCACAGAGGCTC+AGG 0.472980 7:+47696333 MsG0780038497.01.T01:CDS
ATTCCACCTCATTTGTTCAA+AGG 0.498559 7:+47695881 MsG0780038497.01.T01:CDS
ATGTTGGTTAGATTGTGAAA+TGG 0.499145 7:-47696560 None:intergenic
AGAGTACACAAAATGGCAAA+AGG 0.509875 7:-47695820 None:intergenic
TGAAACTAGCTTCGTGGACA+AGG 0.511426 7:+47696994 MsG0780038497.01.T01:CDS
GATAAGTGGAAGTGGTTGCT+AGG 0.517475 7:+47696611 MsG0780038497.01.T01:CDS
CGAGGTAATGTTACCATGCC+GGG 0.519455 7:-47695987 None:intergenic
ATTAGATTCTTCGTATGCAA+TGG 0.519821 7:+47697099 MsG0780038497.01.T01:three_prime_UTR
TAGAGGTCAAAATGAAATAG+AGG 0.520343 7:-47697149 None:intergenic
AACCTCAATCTTGAAATGCC+CGG 0.528343 7:+47695969 MsG0780038497.01.T01:CDS
AGGCATTCTGGAATAATCGT+TGG 0.533891 7:-47696813 None:intergenic
GTAAGATCTGATGGTTTCAA+AGG 0.537922 7:+47697121 MsG0780038497.01.T01:three_prime_UTR
ATCTGATGGTTTCAAAGGCA+TGG 0.539695 7:+47697126 MsG0780038497.01.T01:three_prime_UTR
TATGCAATGGTAAGATCTGA+TGG 0.553065 7:+47697112 MsG0780038497.01.T01:three_prime_UTR
ATCATCGTGATAAGTGGAAG+TGG 0.558767 7:+47696603 MsG0780038497.01.T01:CDS
GGCATTTGTATCTACAGAAG+AGG 0.570153 7:-47696955 None:intergenic
CAGAAGCCTTTGAACAAATG+AGG 0.571227 7:-47695887 None:intergenic
TGAGAATGAAGAGGAAGTCG+TGG 0.574625 7:+47696776 MsG0780038497.01.T01:CDS
ACGAGGTAATGTTACCATGC+CGG 0.576586 7:-47695988 None:intergenic
ATAGGATGTTGAGAATGAAG+AGG 0.586320 7:+47696767 MsG0780038497.01.T01:intron
TAAGAGTTTACATGCTGATG+AGG 0.590879 7:-47697018 None:intergenic
CAATCTTGAAATGCCCGGCA+TGG 0.591720 7:+47695974 MsG0780038497.01.T01:CDS
AAATGAGGTGGAATGATCGA+AGG 0.595111 7:-47695872 None:intergenic
AGCATCAATTAATTACGTGA+AGG 0.612376 7:-47697200 None:intergenic
ATCAGGTTGTCCCATTCTCG+AGG 0.614358 7:+47696162 MsG0780038497.01.T01:intron
AATGAGGTGGAATGATCGAA+GGG 0.626980 7:-47695871 None:intergenic
AAGCCTTTGAACAAATGAGG+TGG 0.628736 7:-47695884 None:intergenic
ACCAAACCGAACCTCATGCA+TGG 0.634129 7:-47696669 None:intergenic
GAAACTAGCTTCGTGGACAA+GGG 0.639791 7:+47696995 MsG0780038497.01.T01:CDS
AGAGGCACTCTTGATTGACA+TGG 0.646981 7:-47696937 None:intergenic
AGATTTAAGTGTAGACAATG+TGG 0.653304 7:+47696198 MsG0780038497.01.T01:CDS
GGAAGTCGTGGATAATTGGG+TGG 0.658477 7:+47696788 MsG0780038497.01.T01:CDS
TAAGTGTAGACAATGTGGAG+TGG 0.677849 7:+47696203 MsG0780038497.01.T01:CDS
GGTCGCTCTCTTCTGCACAG+AGG 0.704138 7:+47696327 MsG0780038497.01.T01:CDS
CTACAACTGAAAATGCTACG+AGG 0.732619 7:-47696005 None:intergenic
ATGAGGTGGAATGATCGAAG+GGG 0.740521 7:-47695870 None:intergenic
GTTCATGCTGCTGCACAACG+TGG 0.752190 7:+47695939 MsG0780038497.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GCATTTTTTTTTATAAAAAT+AGG - Chr7:47696738-47696757 None:intergenic 10.0%
!! AAGAATCTAATATAAAAAGT+AGG - Chr7:47697090-47697109 None:intergenic 15.0%
!! ACTTTGTAAGTATAATATTA+TGG + Chr7:47696368-47696387 MsG0780038497.01.T01:intron 15.0%
!! TTGAAAATTAAATGTTATAG+AGG - Chr7:47697169-47697188 None:intergenic 15.0%
!! TATAAAAATAGGTCAAAAAG+TGG - Chr7:47696727-47696746 None:intergenic 20.0%
!! TTATTTGATTGATGAAAGTT+AGG + Chr7:47697038-47697057 MsG0780038497.01.T01:exon 20.0%
! AAAAAATGCGAATTGTTGAT+AGG + Chr7:47696749-47696768 MsG0780038497.01.T01:intron 25.0%
! ATGGTAAAATGTTGAAGTTT+GGG - Chr7:47696653-47696672 None:intergenic 25.0%
! CATTATTTACTCTTGTGATT+TGG + Chr7:47696415-47696434 MsG0780038497.01.T01:intron 25.0%
! TATTTAGTAGAGATTCTATC+AGG + Chr7:47696145-47696164 MsG0780038497.01.T01:intron 25.0%
! TTTCATCAAAATTTGGTACT+TGG - Chr7:47696979-47696998 None:intergenic 25.0%
! TTTGTAAATTGCAACAGAAT+AGG + Chr7:47696519-47696538 MsG0780038497.01.T01:intron 25.0%
!! AAGCTAGTTTCATCAAAATT+TGG - Chr7:47696986-47697005 None:intergenic 25.0%
!! TTGTTGTTCTTCATTTGAAA+GGG + Chr7:47696033-47696052 MsG0780038497.01.T01:intron 25.0%
!!! ATATTTTGAGTTGTGTTGAA+AGG - Chr7:47696836-47696855 None:intergenic 25.0%
AAAGTGAATGACATTTCTCA+TGG + Chr7:47696059-47696078 MsG0780038497.01.T01:intron 30.0%
AAGTGAATGACATTTCTCAT+GGG + Chr7:47696060-47696079 MsG0780038497.01.T01:intron 30.0%
AGAATAATCATCGTGATAAG+TGG + Chr7:47696597-47696616 MsG0780038497.01.T01:CDS 30.0%
AGATTTAAGTGTAGACAATG+TGG + Chr7:47696198-47696217 MsG0780038497.01.T01:CDS 30.0%
AGCATCAATTAATTACGTGA+AGG - Chr7:47697203-47697222 None:intergenic 30.0%
ATTAGATTCTTCGTATGCAA+TGG + Chr7:47697099-47697118 MsG0780038497.01.T01:three_prime_UTR 30.0%
CATGGTAAAATGTTGAAGTT+TGG - Chr7:47696654-47696673 None:intergenic 30.0%
CCTAGAATGAAAAATCATAG+AGG - Chr7:47696453-47696472 None:intergenic 30.0%
CTCAAAATATGCTTGCTTAA+AGG + Chr7:47696846-47696865 MsG0780038497.01.T01:CDS 30.0%
CTTAATGATAAGCTCTATGT+TGG - Chr7:47696579-47696598 None:intergenic 30.0%
CTTTCAAATGAAGAACAACA+AGG - Chr7:47696034-47696053 None:intergenic 30.0%
TAGAGGTCAAAATGAAATAG+AGG - Chr7:47697152-47697171 None:intergenic 30.0%
TCATTCTAGGTTATAAAGCT+GGG + Chr7:47696463-47696482 MsG0780038497.01.T01:intron 30.0%
TTCATTCTAGGTTATAAAGC+TGG + Chr7:47696462-47696481 MsG0780038497.01.T01:intron 30.0%
TTGCAACAGAATAGGATTAT+CGG + Chr7:47696527-47696546 MsG0780038497.01.T01:intron 30.0%
! ATCTTCTTATTTGACGAATC+TGG + Chr7:47696306-47696325 MsG0780038497.01.T01:CDS 30.0%
! ATGTTGGTTAGATTGTGAAA+TGG - Chr7:47696563-47696582 None:intergenic 30.0%
! CCTCTATGATTTTTCATTCT+AGG + Chr7:47696450-47696469 MsG0780038497.01.T01:intron 30.0%
!! ATGCTAGCTTTGATCAAATT+TGG - Chr7:47696280-47696299 None:intergenic 30.0%
!! CTTGTTGTTCTTCATTTGAA+AGG + Chr7:47696032-47696051 MsG0780038497.01.T01:intron 30.0%
!!! AAAGGATACGAAGTTTTGAA+AGG - Chr7:47695805-47695824 None:intergenic 30.0%
AAATAGGTCAAAAAGTGGTG+AGG - Chr7:47696722-47696741 None:intergenic 35.0%
AACAAGACTGATAGCCATAA+TGG - Chr7:47695763-47695782 None:intergenic 35.0%
ACAAGACTGATAGCCATAAT+GGG - Chr7:47695762-47695781 None:intergenic 35.0%
AGAGTACACAAAATGGCAAA+AGG - Chr7:47695823-47695842 None:intergenic 35.0%
AGTGAATGACATTTCTCATG+GGG + Chr7:47696061-47696080 MsG0780038497.01.T01:intron 35.0%
ATAGGATGTTGAGAATGAAG+AGG + Chr7:47696767-47696786 MsG0780038497.01.T01:intron 35.0%
ATTCCACCTCATTTGTTCAA+AGG + Chr7:47695881-47695900 MsG0780038497.01.T01:CDS 35.0%
GAAAGACAGAGTACACAAAA+TGG - Chr7:47695830-47695849 None:intergenic 35.0%
GGTTATAAAGCTGGGTTTAA+AGG + Chr7:47696471-47696490 MsG0780038497.01.T01:intron 35.0%
GTAAGATCTGATGGTTTCAA+AGG + Chr7:47697121-47697140 MsG0780038497.01.T01:three_prime_UTR 35.0%
TAAGAGTTTACATGCTGATG+AGG - Chr7:47697021-47697040 None:intergenic 35.0%
TATGCAATGGTAAGATCTGA+TGG + Chr7:47697112-47697131 MsG0780038497.01.T01:three_prime_UTR 35.0%
TCGAAAAGAACACTAGACAA+TGG - Chr7:47696115-47696134 None:intergenic 35.0%
! ATTTTACCATGCATGAGGTT+CGG + Chr7:47696663-47696682 MsG0780038497.01.T01:intron 35.0%
! GTTTAAAGGTTCAGGTTCTA+GGG + Chr7:47696485-47696504 MsG0780038497.01.T01:intron 35.0%
! TCAACATTTTACCATGCATG+AGG + Chr7:47696658-47696677 MsG0780038497.01.T01:CDS 35.0%
!! TTTTGATGAAACTAGCTTCG+TGG + Chr7:47696988-47697007 MsG0780038497.01.T01:CDS 35.0%
AAAGCTGGGTTTAAAGGTTC+AGG + Chr7:47696477-47696496 MsG0780038497.01.T01:intron 40.0%
AAATGAGGTGGAATGATCGA+AGG - Chr7:47695875-47695894 None:intergenic 40.0%
AACCTCAATCTTGAAATGCC+CGG + Chr7:47695969-47695988 MsG0780038497.01.T01:CDS 40.0%
AAGAGGAAGTCGTGGATAAT+TGG + Chr7:47696784-47696803 MsG0780038497.01.T01:CDS 40.0%
AAGCCTTTGAACAAATGAGG+TGG - Chr7:47695887-47695906 None:intergenic 40.0%
AATGAGGTGGAATGATCGAA+GGG - Chr7:47695874-47695893 None:intergenic 40.0%
AGAGGAAGTCGTGGATAATT+GGG + Chr7:47696785-47696804 MsG0780038497.01.T01:CDS 40.0%
ATCATCGTGATAAGTGGAAG+TGG + Chr7:47696603-47696622 MsG0780038497.01.T01:CDS 40.0%
ATCTGATGGTTTCAAAGGCA+TGG + Chr7:47697126-47697145 MsG0780038497.01.T01:three_prime_UTR 40.0%
CAGAAGCCTTTGAACAAATG+AGG - Chr7:47695890-47695909 None:intergenic 40.0%
CTACAACTGAAAATGCTACG+AGG - Chr7:47696008-47696027 None:intergenic 40.0%
CTCATTTGTTCAAAGGCTTC+TGG + Chr7:47695888-47695907 MsG0780038497.01.T01:CDS 40.0%
GGCATTTGTATCTACAGAAG+AGG - Chr7:47696958-47696977 None:intergenic 40.0%
TAAGTGTAGACAATGTGGAG+TGG + Chr7:47696203-47696222 MsG0780038497.01.T01:CDS 40.0%
! CTCGTAGCATTTTCAGTTGT+AGG + Chr7:47696006-47696025 MsG0780038497.01.T01:intron 40.0%
! GGTTTAAAGGTTCAGGTTCT+AGG + Chr7:47696484-47696503 MsG0780038497.01.T01:intron 40.0%
! TGTGGAGTGGCTTTTTATAC+AGG + Chr7:47696216-47696235 MsG0780038497.01.T01:CDS 40.0%
!! AGGCATTCTGGAATAATCGT+TGG - Chr7:47696816-47696835 None:intergenic 40.0%
!! AGTTGTGTTGAAAGGCATTC+TGG - Chr7:47696828-47696847 None:intergenic 40.0%
!!! AATGGAGAGTTTTGAGCAGA+GGG - Chr7:47696097-47696116 None:intergenic 40.0%
ACGAGGTAATGTTACCATGC+CGG - Chr7:47695991-47696010 None:intergenic 45.0%
ATGAGGTGGAATGATCGAAG+GGG - Chr7:47695873-47695892 None:intergenic 45.0%
GATAAGTGGAAGTGGTTGCT+AGG + Chr7:47696611-47696630 MsG0780038497.01.T01:CDS 45.0%
GCTTGCAATTCCTCGAGAAT+GGG - Chr7:47696175-47696194 None:intergenic 45.0%
TGACATTTCTCATGGGGTTG+TGG + Chr7:47696067-47696086 MsG0780038497.01.T01:intron 45.0%
TGAGAATGAAGAGGAAGTCG+TGG + Chr7:47696776-47696795 MsG0780038497.01.T01:CDS 45.0%
TGCTTGCAATTCCTCGAGAA+TGG - Chr7:47696176-47696195 None:intergenic 45.0%
! GAAACTAGCTTCGTGGACAA+GGG + Chr7:47696995-47697014 MsG0780038497.01.T01:CDS 45.0%
! TGAAACTAGCTTCGTGGACA+AGG + Chr7:47696994-47697013 MsG0780038497.01.T01:CDS 45.0%
!! AGAGGCACTCTTGATTGACA+TGG - Chr7:47696940-47696959 None:intergenic 45.0%
!! GTTCGGTTTGGTTCATGTCT+TGG + Chr7:47696680-47696699 MsG0780038497.01.T01:intron 45.0%
!!! CAATGGAGAGTTTTGAGCAG+AGG - Chr7:47696098-47696117 None:intergenic 45.0%
ACCAAACCGAACCTCATGCA+TGG - Chr7:47696672-47696691 None:intergenic 50.0%
CAATCTTGAAATGCCCGGCA+TGG + Chr7:47695974-47695993 MsG0780038497.01.T01:CDS 50.0%
CGAGGTAATGTTACCATGCC+GGG - Chr7:47695990-47696009 None:intergenic 50.0%
GGAAGTCGTGGATAATTGGG+TGG + Chr7:47696788-47696807 MsG0780038497.01.T01:CDS 50.0%
TGCCGGGCATTTCAAGATTG+AGG - Chr7:47695974-47695993 None:intergenic 50.0%
! ACCATGCATGAGGTTCGGTT+TGG + Chr7:47696668-47696687 MsG0780038497.01.T01:intron 50.0%
! ATCAGGTTGTCCCATTCTCG+AGG + Chr7:47696162-47696181 MsG0780038497.01.T01:intron 50.0%
GTTCATGCTGCTGCACAACG+TGG + Chr7:47695939-47695958 MsG0780038497.01.T01:CDS 55.0%
TCTCTTCTGCACAGAGGCTC+AGG + Chr7:47696333-47696352 MsG0780038497.01.T01:CDS 55.0%
GGTCGCTCTCTTCTGCACAG+AGG + Chr7:47696327-47696346 MsG0780038497.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 47695753 47697230 47695753 ID=MsG0780038497.01;Name=MsG0780038497.01
Chr7 mRNA 47695753 47697230 47695753 ID=MsG0780038497.01.T01;Parent=MsG0780038497.01;Name=MsG0780038497.01.T01;_AED=0.32;_eAED=0.32;_QI=0|0.33|0.25|1|1|1|4|181|299
Chr7 exon 47695753 47696023 47695753 ID=MsG0780038497.01.T01:exon:6118;Parent=MsG0780038497.01.T01
Chr7 exon 47696167 47696372 47696167 ID=MsG0780038497.01.T01:exon:6119;Parent=MsG0780038497.01.T01
Chr7 exon 47696536 47696679 47696536 ID=MsG0780038497.01.T01:exon:6120;Parent=MsG0780038497.01.T01
Chr7 exon 47696771 47697230 47696771 ID=MsG0780038497.01.T01:exon:6121;Parent=MsG0780038497.01.T01
Chr7 CDS 47695753 47696023 47695753 ID=MsG0780038497.01.T01:cds;Parent=MsG0780038497.01.T01
Chr7 CDS 47696167 47696372 47696167 ID=MsG0780038497.01.T01:cds;Parent=MsG0780038497.01.T01
Chr7 CDS 47696536 47696679 47696536 ID=MsG0780038497.01.T01:cds;Parent=MsG0780038497.01.T01
Chr7 CDS 47696771 47697049 47696771 ID=MsG0780038497.01.T01:cds;Parent=MsG0780038497.01.T01
Chr7 three_prime_UTR 47697050 47697230 47697050 ID=MsG0780038497.01.T01:three_prime_utr;Parent=MsG0780038497.01.T01
Gene Sequence

>MsG0780038497.01.T01

ATGGAACCCATTATGGCTATCAGTCTTGTTCTTCACTTCGACAACGAAGCCTTTCAAAACTTCGTATCCTTTTGCCATTTTGTGTACTCTGTCTTTCTCTTACGAGACATTACTTTACCCCTTCGATCATTCCACCTCATTTGTTCAAAGGCTTCTGGCATTCAGCAACAAGATATCAATCAATTTGTTCATGCTGCTGCACAACGTGGAATCGAGAACCTCAATCTTGAAATGCCCGGCATGGTAACATTACCTCGTAGCATTTTCAGTTGTTGTCCCATTCTCGAGGAATTGCAAGCAGAAGATTTAAGTGTAGACAATGTGGAGTGGCTTTTTATACAGGAAAATTCTGTTATAGCGAAAAAGTTTCTAAGCTTACTACCAAATTTGATCAAAGCTAGCATTACAAAATCTTCTTATTTGACGAATCTGGTCGCTCTCTTCTGCACAGAGGCTCAGGTTCTGCGTGCAGACTTTAATAGGATTATCGGAAATAATAATCCATTTCACAATCTAACCAACATAGAGCTTATCATTAAGAATAATCATCGTGATAAGTGGAAGTGGTTGCTAGGAATGCTGAAACACTGTCCCAAACTTCAACATTTTACCATGCATGAGGATGTTGAGAATGAAGAGGAAGTCGTGGATAATTGGGTGGATCCAACGATTATTCCAGAATGCCTTTCAACACAACTCAAAATATGCTTGCTTAAAGGCTACAAATGCACAGATTGTGAGCTTCTATTTGCAAAATATATAATGCAGAATTCAAAAGTATTGAAGACCATGTCAATCAAGAGTGCCTCTTCTGTAGATACAAATGCCAAGTACCAAATTTTGATGAAACTAGCTTCGTGGACAAGGGCCTCATCAGCATGTAAACTCTTATTTGATTGA
Protein sequence

>MsG0780038497.01.T01

MEPIMAISLVLHFDNEAFQNFVSFCHFVYSVFLLRDITLPLRSFHLICSKASGIQQQDINQFVHAAAQRGIENLNLEMPGMVTLPRSIFSCCPILEELQAEDLSVDNVEWLFIQENSVIAKKFLSLLPNLIKASITKSSYLTNLVALFCTEAQVLRADFNRIIGNNNPFHNLTNIELIIKNNHRDKWKWLLGMLKHCPKLQHFTMHEDVENEEEVVDNWVDPTIIPECLSTQLKICLLKGYKCTDCELLFAKYIMQNSKVLKTMSIKSASSVDTNAKYQILMKLASWTRASSACKLLFD*