AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080049065.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080049065.01.T01 MTR_3g105060 89.352 216 23 0 1 216 19 234 2.20e-135 385
MsG0080049065.01.T01 MTR_3g023630 55.505 218 92 2 1 217 13 226 3.43e-77 237
MsG0080049065.01.T01 MTR_7g114710 56.593 182 78 1 1 181 18 199 4.69e-61 196
MsG0080049065.01.T01 MTR_8g085430 42.991 214 114 2 1 206 16 229 7.13e-44 150
MsG0080049065.01.T01 MTR_3g040700 38.723 235 132 7 1 228 48 277 6.80e-43 150
MsG0080049065.01.T01 MTR_7g032380 44.974 189 101 3 1 187 16 203 2.38e-42 147
MsG0080049065.01.T01 MTR_3g467400 40.789 228 106 8 1 206 8 228 2.75e-42 147
MsG0080049065.01.T01 MTR_7g056447 45.143 175 91 3 1 173 14 185 1.10e-40 141
MsG0080049065.01.T01 MTR_7g098510 43.192 213 106 7 1 206 23 227 8.42e-40 141
MsG0080049065.01.T01 MTR_7g032370 45.349 172 92 2 8 178 2 172 2.28e-39 139
MsG0080049065.01.T01 MTR_7g115270 43.147 197 101 4 2 188 18 213 3.37e-39 139
MsG0080049065.01.T01 MTR_3g036250 36.596 235 131 7 1 225 10 236 3.44e-39 139
MsG0080049065.01.T01 MTR_7g056433 40.476 210 120 4 1 206 17 225 6.48e-37 133
MsG0080049065.01.T01 MTR_1g041245 40.782 179 103 2 1 177 16 193 1.16e-36 132
MsG0080049065.01.T01 MTR_7g098480 43.062 209 111 5 1 206 23 226 5.06e-36 132
MsG0080049065.01.T01 MTR_7g098570 42.326 215 107 7 1 207 25 230 9.71e-36 132
MsG0080049065.01.T01 MTR_7g033945 40.252 159 88 4 1 153 16 173 8.03e-32 115
MsG0080049065.01.T01 MTR_7g034115 42.373 177 99 3 1 175 16 191 1.61e-31 119
MsG0080049065.01.T01 MTR_7g033990 42.077 183 96 4 1 176 16 195 7.83e-31 117
MsG0080049065.01.T01 MTR_1g095750 60.870 92 35 1 1 91 51 142 7.03e-30 108
MsG0080049065.01.T01 MTR_3g082890 38.942 208 112 4 1 199 22 223 1.75e-29 114
MsG0080049065.01.T01 MTR_3g082890 38.942 208 112 4 1 199 102 303 2.33e-29 114
MsG0080049065.01.T01 MTR_3g109982 40.113 177 103 3 1 177 18 191 3.98e-29 115
MsG0080049065.01.T01 MTR_3g110010 40.113 177 103 3 1 177 18 191 4.14e-29 115
MsG0080049065.01.T01 MTR_3g108150 37.799 209 120 5 1 207 18 218 4.20e-29 112
MsG0080049065.01.T01 MTR_3g087260 38.378 185 97 2 1 185 17 184 6.30e-29 113
MsG0080049065.01.T01 MTR_7g088260 36.538 208 124 5 1 207 96 296 1.35e-28 112
MsG0080049065.01.T01 MTR_7g056430 35.638 188 94 3 1 188 14 174 2.54e-28 112
MsG0080049065.01.T01 MTR_7g056420 35.638 188 94 3 1 188 14 174 2.80e-28 112
MsG0080049065.01.T01 MTR_5g008920 36.170 235 131 7 2 229 18 240 3.26e-28 110
MsG0080049065.01.T01 MTR_5g012840 41.818 165 82 5 20 177 13 170 4.03e-28 108
MsG0080049065.01.T01 MTR_0492s0020 38.991 218 113 9 1 214 91 292 5.09e-28 110
MsG0080049065.01.T01 MTR_0543s0010 38.991 218 113 9 1 214 91 292 5.99e-28 110
MsG0080049065.01.T01 MTR_5g073420 35.714 196 119 4 1 190 16 210 1.36e-27 108
MsG0080049065.01.T01 MTR_7g034110 39.130 184 101 4 1 177 16 195 2.62e-26 104
MsG0080049065.01.T01 MTR_4g134150 35.533 197 115 7 1 195 19 205 3.82e-26 101
MsG0080049065.01.T01 MTR_1g108820 40.217 184 99 4 1 180 13 189 2.87e-25 101
MsG0080049065.01.T01 MTR_7g033915 35.377 212 108 7 1 206 16 204 5.52e-25 101
MsG0080049065.01.T01 MTR_1g108820 40.217 184 99 4 1 180 13 189 8.60e-25 100
MsG0080049065.01.T01 MTR_5g008950 33.047 233 143 8 1 230 4 226 1.70e-24 100
MsG0080049065.01.T01 MTR_5g058000 37.705 183 106 3 1 179 13 191 3.52e-24 99.4
MsG0080049065.01.T01 MTR_5g058100 38.674 181 104 4 1 177 14 191 3.61e-24 99.4
MsG0080049065.01.T01 MTR_3g108560 36.517 178 104 4 1 177 25 194 5.69e-24 97.8
MsG0080049065.01.T01 MTR_7g033940 44.144 111 61 1 1 111 99 208 9.34e-24 95.1
MsG0080049065.01.T01 MTR_3g108560 36.517 178 104 4 1 177 25 194 1.20e-23 97.8
MsG0080049065.01.T01 MTR_3g107160 31.897 232 138 6 1 225 15 233 2.23e-23 97.1
MsG0080049065.01.T01 MTR_5g045170 35.870 184 106 5 2 178 20 198 2.16e-22 94.4
MsG0080049065.01.T01 MTR_3g107120 32.743 226 130 5 1 208 14 235 2.63e-22 94.4
MsG0080049065.01.T01 MTR_7g007080 34.101 217 128 7 1 206 9 221 6.38e-22 93.2
MsG0080049065.01.T01 MTR_7g098590 50.962 104 46 3 1 101 23 124 1.27e-21 87.4
MsG0080049065.01.T01 MTR_5g073370 36.458 192 108 4 1 183 10 196 1.83e-21 91.7
MsG0080049065.01.T01 MTR_6g022500 33.891 239 136 9 1 223 106 338 1.99e-21 92.4
MsG0080049065.01.T01 MTR_5g061680 33.880 183 112 4 1 177 16 195 2.71e-21 90.5
MsG0080049065.01.T01 MTR_5g073340 37.222 180 88 3 1 180 13 167 4.80e-21 89.7
MsG0080049065.01.T01 MTR_6g011460 35.025 197 92 6 1 178 51 230 6.61e-21 90.5
MsG0080049065.01.T01 MTR_7g056287 35.676 185 108 5 1 178 8 188 1.06e-20 89.7
MsG0080049065.01.T01 MTR_7g056277 35.676 185 108 5 1 178 264 444 2.46e-20 89.4
MsG0080049065.01.T01 MTR_7g075820 32.000 200 113 5 1 177 11 210 3.38e-20 88.2
MsG0080049065.01.T01 MTR_3g107100 30.939 181 119 4 1 177 16 194 3.70e-20 88.2
MsG0080049065.01.T01 MTR_5g083890 36.364 198 105 5 1 177 11 208 4.30e-20 88.6
MsG0080049065.01.T01 MTR_7g060470 33.511 188 109 5 1 178 8 189 5.61e-20 87.8
MsG0080049065.01.T01 MTR_3g095600 33.333 192 97 5 1 185 9 176 1.48e-19 85.5
MsG0080049065.01.T01 MTR_1g085120 31.500 200 124 5 1 191 184 379 3.51e-19 85.9
MsG0080049065.01.T01 MTR_1g085120 31.500 200 124 5 1 191 97 292 4.05e-19 85.9
MsG0080049065.01.T01 MTR_1g085120 31.500 200 124 5 1 191 172 367 4.65e-19 85.9
MsG0080049065.01.T01 MTR_7g026500 31.551 187 117 4 1 177 19 204 8.57e-19 84.3
MsG0080049065.01.T01 MTR_7g055943 34.239 184 111 4 1 178 45 224 1.10e-18 84.3
MsG0080049065.01.T01 MTR_1089s0010 35.165 182 109 4 1 177 13 190 1.30e-18 84.0
MsG0080049065.01.T01 MTR_2g007500 31.604 212 126 6 1 206 19 217 9.24e-18 80.9
MsG0080049065.01.T01 MTR_2g099980 28.889 225 138 7 1 208 43 262 1.95e-17 80.9
MsG0080049065.01.T01 MTR_6g040270 36.066 183 102 6 1 175 13 188 6.44e-17 79.0
MsG0080049065.01.T01 MTR_1g066830 31.868 182 115 4 1 177 13 190 1.73e-16 77.8
MsG0080049065.01.T01 MTR_3g114200 36.232 138 81 4 1 135 24 157 1.80e-16 74.3
MsG0080049065.01.T01 MTR_6g045333 35.359 181 106 5 3 175 68 245 2.08e-16 77.8
MsG0080049065.01.T01 MTR_4g039440 33.152 184 108 6 1 178 39 213 4.87e-16 76.6
MsG0080049065.01.T01 MTR_6g044572 28.897 263 149 8 1 229 7 265 6.98e-16 76.3
MsG0080049065.01.T01 MTR_7g034090 39.869 153 71 7 2 143 10 152 8.92e-16 75.9
MsG0080049065.01.T01 MTR_5g045510 32.402 179 111 4 2 175 18 191 9.48e-16 75.5
MsG0080049065.01.T01 MTR_6g044560 29.231 260 146 8 1 226 183 438 1.06e-15 75.9
MsG0080049065.01.T01 MTR_5g039490 32.804 189 106 5 2 175 26 208 1.51e-15 75.1
MsG0080049065.01.T01 MTR_5g007410 29.218 243 146 7 1 224 31 266 1.70e-15 75.1
MsG0080049065.01.T01 MTR_1g107385 33.163 196 112 7 1 177 37 232 2.77e-15 74.3
MsG0080049065.01.T01 MTR_2g008310 31.319 182 113 4 1 176 7 182 3.50e-15 73.9
MsG0080049065.01.T01 MTR_3g113782 76.190 42 10 0 1 42 22 63 4.75e-15 68.6
MsG0080049065.01.T01 MTR_7g081290 53.659 82 26 3 1 75 23 99 5.34e-15 72.4
MsG0080049065.01.T01 MTR_2g005990 33.846 195 104 8 1 175 11 200 7.26e-15 73.2
MsG0080049065.01.T01 MTR_0009s0080 32.212 208 120 8 1 194 23 223 7.48e-15 73.2
MsG0080049065.01.T01 MTR_2g020170 41.880 117 59 5 1 110 27 141 9.52e-15 69.3
MsG0080049065.01.T01 MTR_5g039470 31.953 169 104 4 13 176 2 164 1.65e-14 71.6
MsG0080049065.01.T01 MTR_5g039450 32.044 181 92 5 2 176 12 167 1.74e-14 72.0
MsG0080049065.01.T01 MTR_1g067190 34.615 130 78 4 2 130 21 144 3.71e-14 70.9
MsG0080049065.01.T01 MTR_2g072530 29.381 194 109 7 1 178 18 199 4.84e-14 70.9
MsG0080049065.01.T01 MTR_8g058965 28.643 199 120 5 1 177 18 216 5.71e-14 70.9
MsG0080049065.01.T01 MTR_7g056280 33.540 161 102 2 1 156 11 171 1.33e-13 69.7
MsG0080049065.01.T01 MTR_2g007450 32.000 200 115 5 1 179 21 220 1.52e-13 69.3
MsG0080049065.01.T01 MTR_2g007400 29.843 191 118 5 2 176 18 208 1.74e-13 69.3
MsG0080049065.01.T01 MTR_2g082800 32.857 140 83 4 1 135 32 165 1.98e-13 68.9
MsG0080049065.01.T01 MTR_3g071850 32.597 181 111 4 3 175 31 208 2.36e-13 69.3
MsG0080049065.01.T01 MTR_2g008320 32.044 181 115 3 1 175 57 235 3.81e-13 68.2
MsG0080049065.01.T01 MTR_6g022360 31.050 219 116 7 1 206 48 244 4.61e-13 68.2
MsG0080049065.01.T01 MTR_8g062080 31.414 191 118 9 1 181 28 215 6.44e-13 67.8
MsG0080049065.01.T01 MTR_8g445780 29.189 185 118 6 1 176 18 198 1.11e-12 67.0
MsG0080049065.01.T01 MTR_3g099830 31.522 184 100 4 1 176 17 182 1.15e-12 66.6
MsG0080049065.01.T01 MTR_8g468910 29.762 168 102 6 1 157 53 215 2.62e-12 65.9
MsG0080049065.01.T01 MTR_8g017280 30.882 136 84 5 1 130 41 172 2.88e-12 65.1
MsG0080049065.01.T01 MTR_8g017280 30.882 136 84 5 1 130 41 172 3.23e-12 65.5
MsG0080049065.01.T01 MTR_3g095640 35.294 153 90 5 1 144 23 175 3.66e-12 63.2
MsG0080049065.01.T01 MTR_6g061720 50.000 64 28 1 1 60 13 76 5.33e-12 60.1
MsG0080049065.01.T01 MTR_1g492880 38.776 98 56 3 1 95 11 107 5.88e-12 60.8
MsG0080049065.01.T01 MTR_6g018660 33.562 146 78 5 1 131 25 166 6.10e-12 64.7
MsG0080049065.01.T01 MTR_0571s0010 52.459 61 27 1 1 59 37 97 6.55e-12 60.8
MsG0080049065.01.T01 MTR_7g056020 29.050 179 110 3 1 178 21 183 8.71e-12 64.7
MsG0080049065.01.T01 MTR_5g013500 33.557 149 81 6 31 178 30 161 8.93e-12 63.9
MsG0080049065.01.T01 MTR_4g098590 30.366 191 120 4 1 178 4 194 1.17e-11 63.9
MsG0080049065.01.T01 MTR_1g492880 44.304 79 41 2 1 77 11 88 1.23e-11 59.7
MsG0080049065.01.T01 MTR_6g022390 31.624 117 69 2 1 106 10 126 1.35e-11 60.8
MsG0080049065.01.T01 MTR_5g065100 31.148 183 113 5 1 177 13 188 1.55e-11 63.5
MsG0080049065.01.T01 MTR_5g084070 27.273 176 121 4 1 175 18 187 1.93e-11 63.2
MsG0080049065.01.T01 MTR_7g068570 28.358 134 93 2 1 133 10 141 1.99e-11 61.2
MsG0080049065.01.T01 MTR_3g048290 26.178 191 115 4 1 175 28 208 2.63e-11 62.8
MsG0080049065.01.T01 MTR_8g062310 31.694 183 107 8 1 176 30 201 3.16e-11 62.8
MsG0080049065.01.T01 MTR_2g082850 32.394 142 83 5 1 132 27 165 5.35e-11 62.0
MsG0080049065.01.T01 MTR_2g082780 29.448 163 103 5 1 157 17 173 5.98e-11 60.5
MsG0080049065.01.T01 MTR_5g060570 31.298 131 84 4 1 130 22 147 9.77e-11 60.5
MsG0080049065.01.T01 MTR_6g092430 26.667 165 112 4 1 157 15 178 9.99e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080049065.01.T01 AT3G60040 32.673 202 111 9 1 180 18 216 2.03e-18 84.0
MsG0080049065.01.T01 AT5G41840 30.736 231 136 6 1 211 19 245 2.90e-18 83.6
MsG0080049065.01.T01 AT3G60040 32.673 202 111 9 1 180 237 435 3.08e-18 83.6
MsG0080049065.01.T01 AT3G60040 32.673 202 111 9 1 180 238 436 3.14e-18 83.6
MsG0080049065.01.T01 AT3G60040 32.673 202 111 9 1 180 235 433 3.75e-18 83.2
MsG0080049065.01.T01 AT5G22720 29.775 178 122 2 1 176 28 204 3.82e-18 82.8
MsG0080049065.01.T01 AT1G16930 29.379 177 120 2 1 175 20 193 3.96e-18 82.8
MsG0080049065.01.T01 AT1G16930 29.379 177 120 2 1 175 20 193 3.96e-18 82.8
MsG0080049065.01.T01 AT1G16930 29.379 177 120 2 1 175 20 193 3.96e-18 82.8
MsG0080049065.01.T01 AT3G60040 33.168 202 110 9 1 180 237 435 4.09e-18 83.2
MsG0080049065.01.T01 AT5G44490 28.889 180 123 4 1 176 22 200 1.02e-17 81.6
MsG0080049065.01.T01 AT5G44490 28.889 180 123 4 1 176 22 200 1.47e-17 81.3
MsG0080049065.01.T01 AT4G14103 34.054 185 107 6 1 175 13 192 2.07e-17 80.5
MsG0080049065.01.T01 AT4G14103 34.054 185 107 6 1 175 13 192 2.07e-17 80.5
MsG0080049065.01.T01 AT4G14103 34.054 185 107 6 1 175 13 192 2.83e-17 80.5
MsG0080049065.01.T01 AT3G44810 34.555 191 103 8 1 175 12 196 9.23e-17 79.0
MsG0080049065.01.T01 AT4G14096 32.796 186 106 6 1 175 13 190 1.07e-16 79.0
MsG0080049065.01.T01 AT4G14096 32.796 186 106 6 1 175 13 190 1.07e-16 79.0
MsG0080049065.01.T01 AT4G00315 31.868 182 115 5 1 175 7 186 1.19e-16 78.6
MsG0080049065.01.T01 AT5G22670 31.868 182 111 3 1 177 16 189 1.65e-16 78.2
MsG0080049065.01.T01 AT5G56380 31.551 187 111 6 1 175 7 188 1.68e-16 78.2
MsG0080049065.01.T01 AT5G56380 31.551 187 111 6 1 175 7 188 1.68e-16 78.2
MsG0080049065.01.T01 AT5G41630 30.088 226 133 6 1 207 17 236 2.11e-16 77.8
MsG0080049065.01.T01 AT1G78840 33.708 178 106 5 1 175 11 179 3.80e-16 77.0
MsG0080049065.01.T01 AT1G78840 33.708 178 106 5 1 175 11 179 3.80e-16 77.0
MsG0080049065.01.T01 AT5G56370 32.768 177 110 6 1 173 7 178 4.24e-16 76.3
MsG0080049065.01.T01 AT1G58310 34.466 206 97 10 1 176 13 210 6.43e-16 76.6
MsG0080049065.01.T01 AT5G56370 32.768 177 110 6 1 173 7 178 6.81e-16 76.3
MsG0080049065.01.T01 AT5G56370 32.768 177 110 6 1 173 7 178 6.81e-16 76.3
MsG0080049065.01.T01 AT5G56820 31.492 181 109 5 1 176 20 190 1.69e-15 75.1
MsG0080049065.01.T01 AT5G25850 30.899 178 112 3 1 175 25 194 2.85e-15 74.7
MsG0080049065.01.T01 AT4G09920 32.778 180 112 6 1 175 7 182 3.96e-15 73.2
MsG0080049065.01.T01 AT4G09920 32.778 180 112 6 1 175 7 182 3.96e-15 73.2
MsG0080049065.01.T01 AT4G09920 32.778 180 112 6 1 175 7 182 3.96e-15 73.2
MsG0080049065.01.T01 AT5G22730 29.282 181 116 4 1 175 33 207 6.13e-15 73.6
MsG0080049065.01.T01 AT5G56420 31.111 180 114 4 1 175 11 185 6.84e-15 73.6
MsG0080049065.01.T01 AT5G56420 31.111 180 114 4 1 175 11 185 6.84e-15 73.6
MsG0080049065.01.T01 AT5G56420 31.111 180 114 4 1 175 11 185 6.84e-15 73.6
MsG0080049065.01.T01 AT3G59200 33.862 189 104 7 1 175 12 193 6.88e-15 73.2
MsG0080049065.01.T01 AT5G22730 29.282 181 116 4 1 175 33 207 7.15e-15 73.6
MsG0080049065.01.T01 AT5G22730 29.282 181 116 4 1 175 33 207 7.15e-15 73.6
MsG0080049065.01.T01 AT4G27050 33.168 202 99 8 1 175 9 201 7.28e-15 73.6
MsG0080049065.01.T01 AT4G27050 33.168 202 99 8 1 175 9 201 7.28e-15 73.6
MsG0080049065.01.T01 AT4G27050 33.168 202 99 8 1 175 9 201 7.28e-15 73.6
MsG0080049065.01.T01 AT4G27050 33.168 202 99 8 1 175 9 201 7.28e-15 73.6
MsG0080049065.01.T01 AT4G27050 33.168 202 99 8 1 175 9 201 7.28e-15 73.6
MsG0080049065.01.T01 AT1G06630 33.862 189 108 7 1 175 17 202 7.60e-15 72.4
MsG0080049065.01.T01 AT4G10400 32.973 185 113 6 1 179 7 186 8.24e-15 73.2
MsG0080049065.01.T01 AT4G10400 32.973 185 113 6 1 179 7 186 8.24e-15 73.2
MsG0080049065.01.T01 AT4G10400 32.973 185 113 6 1 179 7 186 8.24e-15 73.2
MsG0080049065.01.T01 AT2G42730 34.921 189 106 7 1 175 10 195 8.53e-15 73.2
MsG0080049065.01.T01 AT4G09920 32.778 180 112 6 1 175 7 182 8.72e-15 72.4
MsG0080049065.01.T01 AT4G09920 32.778 180 112 6 1 175 7 182 8.72e-15 72.4
MsG0080049065.01.T01 AT1G06630 33.862 189 108 7 1 175 17 202 9.24e-15 72.8
MsG0080049065.01.T01 AT1G06630 33.862 189 108 7 1 175 17 202 9.24e-15 72.8
MsG0080049065.01.T01 AT1G78760 28.497 193 124 5 1 189 21 203 1.18e-14 72.8
MsG0080049065.01.T01 AT1G06630 33.862 189 108 7 1 175 17 202 1.21e-14 72.8
MsG0080049065.01.T01 AT1G06630 33.862 189 108 7 1 175 17 202 1.21e-14 72.8
MsG0080049065.01.T01 AT1G06630 33.862 189 108 7 1 175 17 202 1.21e-14 72.8
MsG0080049065.01.T01 AT1G06630 33.862 189 108 7 1 175 17 202 1.21e-14 72.8
MsG0080049065.01.T01 AT1G06630 33.862 189 108 7 1 175 26 211 1.49e-14 72.4
MsG0080049065.01.T01 AT3G59200 34.392 189 103 8 1 175 12 193 1.57e-14 72.4
MsG0080049065.01.T01 AT5G62970 28.205 234 134 6 3 207 10 238 1.65e-14 72.4
MsG0080049065.01.T01 AT1G06630 33.862 189 108 7 1 175 17 202 2.22e-14 72.0
MsG0080049065.01.T01 AT5G22610 30.220 182 118 5 1 175 23 202 2.44e-14 72.0
MsG0080049065.01.T01 AT5G22610 30.220 182 118 5 1 175 23 202 2.47e-14 72.0
MsG0080049065.01.T01 AT3G49150 32.973 185 110 5 1 175 21 201 2.86e-14 71.6
MsG0080049065.01.T01 AT3G44060 31.148 183 115 5 1 175 4 183 3.52e-14 71.2
MsG0080049065.01.T01 AT2G26030 30.939 181 111 7 1 174 9 182 4.50e-14 71.2
MsG0080049065.01.T01 AT2G26030 30.939 181 111 7 1 174 9 182 4.86e-14 70.9
MsG0080049065.01.T01 AT2G26030 30.939 181 111 7 1 174 9 182 4.86e-14 70.9
MsG0080049065.01.T01 AT4G00160 26.190 210 144 6 1 206 21 223 5.33e-14 70.9
MsG0080049065.01.T01 AT3G42770 31.746 189 114 5 1 176 4 190 5.37e-14 70.9
MsG0080049065.01.T01 AT5G53635 26.667 180 122 3 1 175 5 179 5.60e-14 70.9
MsG0080049065.01.T01 AT5G22660 28.169 213 149 2 1 212 18 227 7.89e-14 69.7
MsG0080049065.01.T01 AT1G48400 31.551 187 110 6 1 175 15 195 9.62e-14 70.1
MsG0080049065.01.T01 AT1G48400 31.551 187 110 6 1 175 15 195 9.76e-14 70.1
MsG0080049065.01.T01 AT5G56410 30.729 192 114 5 3 175 10 201 1.04e-13 70.1
MsG0080049065.01.T01 AT3G59240 30.481 187 115 7 1 176 13 195 1.04e-13 70.1
MsG0080049065.01.T01 AT1G64540 32.143 196 106 7 1 191 10 183 1.42e-13 69.7
MsG0080049065.01.T01 AT1G64540 32.143 196 106 7 1 191 10 183 1.42e-13 69.7
MsG0080049065.01.T01 AT3G58860 32.804 189 106 7 1 175 12 193 1.47e-13 69.7
MsG0080049065.01.T01 AT5G22660 28.169 213 149 2 1 212 18 227 1.59e-13 69.3
MsG0080049065.01.T01 AT5G53640 28.492 179 121 3 3 180 29 201 1.79e-13 67.8
MsG0080049065.01.T01 AT3G59190 33.161 193 103 8 1 175 17 201 1.88e-13 69.3
MsG0080049065.01.T01 AT3G59190 33.161 193 103 8 1 175 17 201 3.19e-13 68.6
MsG0080049065.01.T01 AT3G50710 29.508 183 117 5 1 175 7 185 3.46e-13 68.6
MsG0080049065.01.T01 AT3G58900 31.414 191 108 6 1 176 7 189 3.64e-13 67.8
MsG0080049065.01.T01 AT5G38590 30.220 182 116 6 1 177 7 182 3.99e-13 67.4
MsG0080049065.01.T01 AT3G58900 31.414 191 108 6 1 176 7 189 4.05e-13 67.8
MsG0080049065.01.T01 AT3G58900 31.414 191 108 6 1 176 7 189 4.05e-13 67.8
MsG0080049065.01.T01 AT1G78750 30.481 187 116 6 1 176 23 206 4.54e-13 68.2
MsG0080049065.01.T01 AT1G78750 30.481 187 116 6 1 176 23 206 4.54e-13 68.2
MsG0080049065.01.T01 AT1G66310 29.282 181 114 3 1 175 24 196 4.62e-13 68.2
MsG0080049065.01.T01 AT5G44950 31.720 186 105 9 1 175 9 183 4.63e-13 68.2
MsG0080049065.01.T01 AT3G58900 31.414 191 108 6 1 176 7 189 4.99e-13 68.2
MsG0080049065.01.T01 AT5G38590 30.220 182 116 6 1 177 7 182 5.69e-13 67.8
MsG0080049065.01.T01 AT1G55030 30.168 179 113 4 1 175 24 194 5.70e-13 67.8
MsG0080049065.01.T01 AT1G55030 30.168 179 113 4 1 175 14 184 5.99e-13 67.8
MsG0080049065.01.T01 AT5G44940 32.620 187 107 7 2 176 11 190 6.91e-13 67.4
MsG0080049065.01.T01 AT1G66320 25.424 177 126 2 1 175 35 207 1.12e-12 67.0
MsG0080049065.01.T01 AT1G55660 30.270 185 114 6 1 175 58 237 1.13e-12 66.6
MsG0080049065.01.T01 AT1G55660 30.270 185 114 6 1 175 58 237 1.38e-12 66.6
MsG0080049065.01.T01 AT2G42720 35.676 185 108 7 1 175 7 190 1.55e-12 66.6
MsG0080049065.01.T01 AT4G26340 28.649 185 122 6 1 180 7 186 2.41e-12 65.9
MsG0080049065.01.T01 AT2G29910 29.108 213 134 7 1 208 10 210 3.18e-12 65.5
MsG0080049065.01.T01 AT2G29910 29.108 213 134 7 1 208 10 210 3.18e-12 65.5
MsG0080049065.01.T01 AT4G13985 27.419 186 126 2 1 177 24 209 3.38e-12 65.5
MsG0080049065.01.T01 AT2G29910 29.108 213 134 7 1 208 10 210 4.32e-12 65.1
MsG0080049065.01.T01 AT2G29910 29.108 213 134 7 1 208 10 210 4.32e-12 65.1
MsG0080049065.01.T01 AT2G29910 29.108 213 134 7 1 208 10 210 4.32e-12 65.1
MsG0080049065.01.T01 AT2G29910 29.108 213 134 7 1 208 10 210 4.32e-12 65.1
MsG0080049065.01.T01 AT2G29910 29.108 213 134 7 1 208 34 234 4.39e-12 65.1
MsG0080049065.01.T01 AT2G04230 29.891 184 117 6 1 175 18 198 4.95e-12 65.1
MsG0080049065.01.T01 AT4G13965 27.684 177 121 4 1 175 15 186 5.78e-12 64.7
MsG0080049065.01.T01 AT3G59000 33.526 173 93 7 1 156 7 174 5.91e-12 65.1
MsG0080049065.01.T01 AT1G49610 40.385 104 50 3 1 102 31 124 6.67e-12 64.3
MsG0080049065.01.T01 AT1G69630 28.571 182 123 4 1 178 23 201 6.85e-12 64.7
MsG0080049065.01.T01 AT1G32375 32.432 185 114 8 1 178 7 187 8.25e-12 64.3
MsG0080049065.01.T01 AT1G32375 32.432 185 114 8 1 178 7 187 8.25e-12 64.3
MsG0080049065.01.T01 AT3G58930 29.327 208 123 10 1 188 7 210 1.02e-11 64.3
MsG0080049065.01.T01 AT3G58930 29.327 208 123 10 1 188 7 210 1.02e-11 64.3
MsG0080049065.01.T01 AT3G58930 29.327 208 123 10 1 188 7 210 1.02e-11 64.3
MsG0080049065.01.T01 AT3G58880 31.282 195 113 6 1 180 8 196 1.05e-11 64.3
MsG0080049065.01.T01 AT5G38390 34.078 179 104 8 1 175 7 175 1.27e-11 63.9
MsG0080049065.01.T01 AT1G66300 28.177 181 116 3 1 175 34 206 1.93e-11 63.5
MsG0080049065.01.T01 AT1G51370 28.249 177 116 3 1 175 24 191 2.11e-11 63.2
MsG0080049065.01.T01 AT3G58980 33.088 136 80 4 1 132 7 135 2.50e-11 63.2
MsG0080049065.01.T01 AT2G26860 32.432 185 112 6 1 176 7 187 2.53e-11 62.8
MsG0080049065.01.T01 AT2G26860 32.432 185 112 6 1 176 7 187 2.53e-11 62.8
MsG0080049065.01.T01 AT1G51370 28.249 177 116 3 1 175 24 191 3.01e-11 62.8
MsG0080049065.01.T01 AT3G62440 30.102 196 116 8 1 177 7 200 3.01e-11 62.8
MsG0080049065.01.T01 AT1G51370 28.249 177 116 3 1 175 24 191 3.05e-11 62.8
MsG0080049065.01.T01 AT3G58940 30.151 199 109 8 1 176 7 198 3.14e-11 62.8
MsG0080049065.01.T01 AT3G58940 30.151 199 109 8 1 176 7 198 3.14e-11 62.8
MsG0080049065.01.T01 AT5G56810 29.050 179 120 6 1 175 20 195 3.83e-11 62.0
MsG0080049065.01.T01 AT5G56810 29.050 179 120 6 1 175 20 195 4.00e-11 62.4
MsG0080049065.01.T01 AT1G21990 31.111 180 113 6 2 175 15 189 4.02e-11 62.4
MsG0080049065.01.T01 AT5G38392 31.282 195 107 7 1 175 7 194 4.17e-11 60.8
MsG0080049065.01.T01 AT1G60410 28.804 184 126 4 1 180 15 197 4.50e-11 62.4
MsG0080049065.01.T01 AT4G22280 29.609 179 119 4 1 176 7 181 4.72e-11 62.0
MsG0080049065.01.T01 AT4G00320 28.934 197 112 7 1 175 18 208 5.04e-11 62.4
MsG0080049065.01.T01 AT4G22280 29.609 179 119 4 1 176 7 181 5.40e-11 62.0
MsG0080049065.01.T01 AT5G56400 28.649 185 122 6 1 180 38 217 7.32e-11 61.6
MsG0080049065.01.T01 AT2G29930 28.571 210 135 5 1 206 17 215 7.92e-11 61.6
MsG0080049065.01.T01 AT2G29930 28.571 210 135 5 1 206 17 215 7.92e-11 61.6
MsG0080049065.01.T01 AT5G53840 27.273 176 124 1 1 176 23 194 9.48e-11 61.2

Find 47 sgRNAs with CRISPR-Local

Find 48 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAATGCTTTACCTAATT+TGG 0.082249 contig645end:-4231 MsG0080049065.01.T01:CDS
CTGCGAAAGCTGTTGAAATT+TGG 0.130419 contig645end:+4677 None:intergenic
TGCGAAAGCTGTTGAAATTT+GGG 0.265999 contig645end:+4678 None:intergenic
ATCCTTACCTTGGCCAAATT+AGG 0.282611 contig645end:+4218 None:intergenic
ACATTCTATCGAATTGTCTT+TGG 0.295382 contig645end:+4564 None:intergenic
TTTGAAAGTAAAGGAATAGA+TGG 0.305635 contig645end:+4610 None:intergenic
AAAGCATTCAAGTTTACTAT+TGG 0.312591 contig645end:+4242 None:intergenic
TCTTGTCAAAACTCTTCATT+TGG 0.316850 contig645end:-4381 MsG0080049065.01.T01:CDS
ACTTGTGGTTGCAGCAAGTT+TGG 0.381152 contig645end:+4769 None:intergenic
GCATTCAAATCTTCTAGAAT+AGG 0.391238 contig645end:+4305 None:intergenic
GATATGATGACTTTGTTGTT+AGG 0.393327 contig645end:-4179 MsG0080049065.01.T01:CDS
TTGTTGACTTAGCCATGTTC+CGG 0.400827 contig645end:-4652 MsG0080049065.01.T01:CDS
TTTAAATTTGTGATGGAAAG+AGG 0.401980 contig645end:-4542 MsG0080049065.01.T01:CDS
ATAAACTTCACAAAACATTC+AGG 0.433608 contig645end:+4338 None:intergenic
GCCAAGGTAAGGATTTGTTA+TGG 0.436816 contig645end:-4209 MsG0080049065.01.T01:CDS
GTGACTTAATTTGAAAGTAA+AGG 0.440367 contig645end:+4601 None:intergenic
GCATTCAAGTTTACTATTGG+AGG 0.446523 contig645end:+4245 None:intergenic
GGTAAGGATTTGTTATGGTA+TGG 0.448925 contig645end:-4204 MsG0080049065.01.T01:CDS
GTGGTTGCAGCAAGTTTGGT+TGG 0.457561 contig645end:+4773 None:intergenic
TCCTCGCATTCTCAATTGTA+AGG 0.466857 contig645end:-4465 MsG0080049065.01.T01:CDS
TGGTTGCAGCAAGTTTGGTT+GGG 0.473313 contig645end:+4774 None:intergenic
GGCTCTTCAGATTCTTACGT+TGG 0.475777 contig645end:-4444 MsG0080049065.01.T01:CDS
TAGAATGTTTAAATTTGTGA+TGG 0.477460 contig645end:-4549 MsG0080049065.01.T01:CDS
GCTCTTCAGATTCTTACGTT+GGG 0.483963 contig645end:-4443 MsG0080049065.01.T01:CDS
TACCTAATTTGGCCAAGGTA+AGG 0.487331 contig645end:-4220 MsG0080049065.01.T01:CDS
CAAGTATACTTTCTAAGAGA+TGG 0.504386 contig645end:-4751 MsG0080049065.01.T01:CDS
ACTTTCTAAGAGATGGAAAC+CGG 0.512353 contig645end:-4744 MsG0080049065.01.T01:CDS
CTAAGAGATGGAAACCGGTA+TGG 0.514387 contig645end:-4739 MsG0080049065.01.T01:CDS
CGAATTGTCTTTGGTTGAAG+CGG 0.521048 contig645end:+4573 None:intergenic
TTGAAAGTAAAGGAATAGAT+GGG 0.535390 contig645end:+4611 None:intergenic
ATATGACTGAGTATTGAATC+CGG 0.554903 contig645end:+4809 None:intergenic
TGCTTTACCTAATTTGGCCA+AGG 0.560601 contig645end:-4225 MsG0080049065.01.T01:CDS
ACCATAACAAATCCTTACCT+TGG 0.565985 contig645end:+4208 None:intergenic
GAATTGTCTTTGGTTGAAGC+GGG 0.566514 contig645end:+4574 None:intergenic
GTGAACACGGAGAGCCATAC+CGG 0.570800 contig645end:+4725 None:intergenic
TTTGTCTCGCAACCGGAACA+TGG 0.570851 contig645end:+4640 None:intergenic
GTCAAAATCAAGAGTGAACA+CGG 0.574822 contig645end:+4712 None:intergenic
ACTTCTACTTAATCTGACCA+TGG 0.588097 contig645end:+4138 None:intergenic
CTTCTACTTAATCTGACCAT+GGG 0.590711 contig645end:+4139 None:intergenic
TCTCTTAGAAAGTATACTTG+TGG 0.597507 contig645end:+4754 None:intergenic
GCGAAAGCTGTTGAAATTTG+GGG 0.598506 contig645end:+4679 None:intergenic
GCCTTACAATTGAGAATGCG+AGG 0.607116 contig645end:+4464 None:intergenic
AAAGCTGTTGAAATTTGGGG+AGG 0.632645 contig645end:+4682 None:intergenic
AACTTCACAAAACATTCAGG+AGG 0.687438 contig645end:+4341 None:intergenic
AACTACGCACAATTTCCCCA+TGG 0.689908 contig645end:-4155 MsG0080049065.01.T01:CDS
TTCTACTTAATCTGACCATG+GGG 0.695566 contig645end:+4140 None:intergenic
TTACAATTGAGAATGCGAGG+AGG 0.761506 contig645end:+4467 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCAAAAAATTTGATAAAG+TGG - contig645end:4543-4562 MsG0080049065.01.T01:CDS 15.0%
!! TAGAATGTTTAAATTTGTGA+TGG - contig645end:4405-4424 MsG0080049065.01.T01:CDS 20.0%
!!! TGTTTTGTGAAGTTTATATA+TGG - contig645end:4622-4641 MsG0080049065.01.T01:CDS 20.0%
! ATAAACTTCACAAAACATTC+AGG + contig645end:4619-4638 None:intergenic 25.0%
! TTGAAAGTAAAGGAATAGAT+GGG + contig645end:4346-4365 None:intergenic 25.0%
! TTTGAAAGTAAAGGAATAGA+TGG + contig645end:4347-4366 None:intergenic 25.0%
!! AAAGCATTCAAGTTTACTAT+TGG + contig645end:4715-4734 None:intergenic 25.0%
!! GTGACTTAATTTGAAAGTAA+AGG + contig645end:4356-4375 None:intergenic 25.0%
!! TTTAAATTTGTGATGGAAAG+AGG - contig645end:4412-4431 MsG0080049065.01.T01:CDS 25.0%
ACATTCTATCGAATTGTCTT+TGG + contig645end:4393-4412 None:intergenic 30.0%
CTTGAATGCTTTACCTAATT+TGG - contig645end:4723-4742 MsG0080049065.01.T01:CDS 30.0%
TCTTGTCAAAACTCTTCATT+TGG - contig645end:4573-4592 MsG0080049065.01.T01:CDS 30.0%
! CAAGTATACTTTCTAAGAGA+TGG - contig645end:4203-4222 MsG0080049065.01.T01:CDS 30.0%
! TCTCTTAGAAAGTATACTTG+TGG + contig645end:4203-4222 None:intergenic 30.0%
!! AAATGAAGAGTTTTGACAAG+AGG + contig645end:4574-4593 None:intergenic 30.0%
!! ATATGACTGAGTATTGAATC+CGG + contig645end:4148-4167 None:intergenic 30.0%
!! GATATGATGACTTTGTTGTT+AGG - contig645end:4775-4794 MsG0080049065.01.T01:CDS 30.0%
!! GCATTCAAATCTTCTAGAAT+AGG + contig645end:4652-4671 None:intergenic 30.0%
AACTTCACAAAACATTCAGG+AGG + contig645end:4616-4635 None:intergenic 35.0%
ACCATAACAAATCCTTACCT+TGG + contig645end:4749-4768 None:intergenic 35.0%
GTCAAAATCAAGAGTGAACA+CGG + contig645end:4245-4264 None:intergenic 35.0%
TGCGAAAGCTGTTGAAATTT+GGG + contig645end:4279-4298 None:intergenic 35.0%
! ACTTTCTAAGAGATGGAAAC+CGG - contig645end:4210-4229 MsG0080049065.01.T01:CDS 35.0%
! GCATTCAAGTTTACTATTGG+AGG + contig645end:4712-4731 None:intergenic 35.0%
!! GGTAAGGATTTGTTATGGTA+TGG - contig645end:4750-4769 MsG0080049065.01.T01:CDS 35.0%
AAAGCTGTTGAAATTTGGGG+AGG + contig645end:4275-4294 None:intergenic 40.0%
ATCCTTACCTTGGCCAAATT+AGG + contig645end:4739-4758 None:intergenic 40.0%
CGAATTGTCTTTGGTTGAAG+CGG + contig645end:4384-4403 None:intergenic 40.0%
CTGCGAAAGCTGTTGAAATT+TGG + contig645end:4280-4299 None:intergenic 40.0%
GAATTGTCTTTGGTTGAAGC+GGG + contig645end:4383-4402 None:intergenic 40.0%
GCGAAAGCTGTTGAAATTTG+GGG + contig645end:4278-4297 None:intergenic 40.0%
GCTCTTCAGATTCTTACGTT+GGG - contig645end:4511-4530 MsG0080049065.01.T01:CDS 40.0%
TACCTAATTTGGCCAAGGTA+AGG - contig645end:4734-4753 MsG0080049065.01.T01:CDS 40.0%
TCCTCGCATTCTCAATTGTA+AGG - contig645end:4489-4508 MsG0080049065.01.T01:CDS 40.0%
TGCTTTACCTAATTTGGCCA+AGG - contig645end:4729-4748 MsG0080049065.01.T01:CDS 40.0%
TTACAATTGAGAATGCGAGG+AGG + contig645end:4490-4509 None:intergenic 40.0%
!! GCCAAGGTAAGGATTTGTTA+TGG - contig645end:4745-4764 MsG0080049065.01.T01:CDS 40.0%
!! TTGTTGACTTAGCCATGTTC+CGG - contig645end:4302-4321 MsG0080049065.01.T01:CDS 40.0%
!!! GAGTTTTTTTGTCTCGCAAC+CGG + contig645end:4324-4343 None:intergenic 40.0%
AACTACGCACAATTTCCCCA+TGG - contig645end:4799-4818 MsG0080049065.01.T01:CDS 45.0%
ACTTGTGGTTGCAGCAAGTT+TGG + contig645end:4188-4207 None:intergenic 45.0%
CTAAGAGATGGAAACCGGTA+TGG - contig645end:4215-4234 MsG0080049065.01.T01:CDS 45.0%
GCCTTACAATTGAGAATGCG+AGG + contig645end:4493-4512 None:intergenic 45.0%
GGCTCTTCAGATTCTTACGT+TGG - contig645end:4510-4529 MsG0080049065.01.T01:CDS 45.0%
TGGTTGCAGCAAGTTTGGTT+GGG + contig645end:4183-4202 None:intergenic 45.0%
GTGGTTGCAGCAAGTTTGGT+TGG + contig645end:4184-4203 None:intergenic 50.0%
TTTGTCTCGCAACCGGAACA+TGG + contig645end:4317-4336 None:intergenic 50.0%
GTGAACACGGAGAGCCATAC+CGG + contig645end:4232-4251 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
contig645end gene 4142 4834 4142 ID=MsG0080049065.01;Name=MsG0080049065.01
contig645end mRNA 4142 4834 4142 ID=MsG0080049065.01.T01;Parent=MsG0080049065.01;Name=MsG0080049065.01.T01;_AED=0.28;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|230
contig645end exon 4142 4834 4142 ID=MsG0080049065.01.T01:exon:4324;Parent=MsG0080049065.01.T01
contig645end CDS 4142 4834 4142 ID=MsG0080049065.01.T01:cds;Parent=MsG0080049065.01.T01
Gene Sequence

>MsG0080049065.01.T01

ATGCCGGATTCAATACTCAGTCATATTCTCTCTTTTCTCCCAACCAAACTTGCTGCAACCACAAGTATACTTTCTAAGAGATGGAAACCGGTATGGCTCTCCGTGTTCACTCTTGATTTTGACGACAAAACCTCCCCAAATTTCAACAGCTTTCGCAGATTTGTTGACTTAGCCATGTTCCGGTTGCGAGACAAAAAAACTCCCATCTATTCCTTTACTTTCAAATTAAGTCACTCTTCCCGCTTCAACCAAAGACAATTCGATAGAATGTTTAAATTTGTGATGGAAAGAGGAGTCAAGAATCTCAACTTCAACATGACTGATAAACAGCGTTCTATCAATTTACCTCCTCGCATTCTCAATTGTAAGGCTCTTCAGATTCTTACGTTGGGAAACTTACTTATCAAAAAATTTGATAAAGTGGATTTTCCTCTTGTCAAAACTCTTCATTTGGATAGAGTTTTTTTCACACCTCCTGAATGTTTTGTGAAGTTTATATATGGTTTTCCTATTCTAGAAGATTTGAATGCAAAATTACATCTGTTGAGTTCGCGAGAGTCGCTTGATCCTCCAATAGTAAACTTGAATGCTTTACCTAATTTGGCCAAGGTAAGGATTTGTTATGGTATGGATGATATGATGACTTTGTTGTTAGGAAACTACGCACAATTTCCCCATGGTCAGATTAAGTAG

Protein sequence

>MsG0080049065.01.T01

MPDSILSHILSFLPTKLAATTSILSKRWKPVWLSVFTLDFDDKTSPNFNSFRRFVDLAMFRLRDKKTPIYSFTFKLSHSSRFNQRQFDRMFKFVMERGVKNLNFNMTDKQRSINLPPRILNCKALQILTLGNLLIKKFDKVDFPLVKTLHLDRVFFTPPECFVKFIYGFPILEDLNAKLHLLSSRESLDPPIVNLNALPNLAKVRICYGMDDMMTLLLGNYAQFPHGQIK*