AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021923.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021923.01.T01 MTR_4g078875 96.479 284 10 0 1 284 1 284 0.0 575
MsG0480021923.01.T01 MTR_2g090735 79.570 279 51 4 1 277 1 275 3.99e-152 426
MsG0480021923.01.T01 MTR_4g088245 67.159 271 75 7 13 277 32 294 3.53e-119 344
MsG0480021923.01.T01 MTR_2g014680 60.490 286 94 8 1 274 1 279 2.26e-112 327
MsG0480021923.01.T01 MTR_8g069160 73.709 213 49 4 13 220 32 242 4.74e-108 314
MsG0480021923.01.T01 MTR_8g102240 74.359 195 39 4 26 214 30 219 2.57e-95 289
MsG0480021923.01.T01 MTR_8g102240 74.359 195 39 4 26 214 30 219 2.64e-95 289
MsG0480021923.01.T01 MTR_5g053430 55.330 197 83 2 19 215 32 223 6.33e-69 220
MsG0480021923.01.T01 MTR_5g053430 55.330 197 83 2 19 215 32 223 8.56e-69 220
MsG0480021923.01.T01 MTR_1g093680 56.250 192 79 2 24 215 37 223 4.00e-68 219
MsG0480021923.01.T01 MTR_7g033320 54.054 185 82 1 24 208 34 215 1.08e-63 208
MsG0480021923.01.T01 MTR_1g093670 52.907 172 65 2 44 215 19 174 9.71e-50 167
MsG0480021923.01.T01 MTR_4g078895 71.642 67 19 0 23 89 12 78 1.86e-27 102
MsG0480021923.01.T01 MTR_7g011120 29.469 207 109 7 43 235 3 186 7.51e-16 76.6
MsG0480021923.01.T01 MTR_3g435150 28.512 242 144 6 48 282 16 235 1.26e-15 75.9
MsG0480021923.01.T01 MTR_7g085260 33.862 189 85 9 34 208 9 171 2.66e-14 72.8
MsG0480021923.01.T01 MTR_6g012670 34.722 144 74 5 48 189 20 145 6.22e-14 71.2
MsG0480021923.01.T01 MTR_6g032770 33.140 172 81 8 48 206 18 168 2.59e-13 69.7
MsG0480021923.01.T01 MTR_7g005280 32.653 147 76 7 48 191 15 141 6.99e-13 67.4
MsG0480021923.01.T01 MTR_3g088110 28.641 206 105 8 48 246 7 177 1.49e-12 67.0
MsG0480021923.01.T01 MTR_4g036030 29.480 173 95 7 42 206 1 154 1.53e-12 67.4
MsG0480021923.01.T01 MTR_5g014300 30.769 169 89 8 48 205 6 157 2.01e-12 67.0
MsG0480021923.01.T01 MTR_3g109340 29.609 179 102 7 33 206 9 168 2.19e-12 67.0
MsG0480021923.01.T01 MTR_3g093050 28.395 162 88 6 33 187 7 147 5.99e-12 66.2
MsG0480021923.01.T01 MTR_3g093050 28.395 162 88 6 33 187 7 147 7.13e-12 65.9
MsG0480021923.01.T01 MTR_2g078700 34.247 146 74 6 48 189 23 150 8.80e-12 65.1
MsG0480021923.01.T01 MTR_3g116070 33.557 149 78 6 47 191 22 153 1.33e-11 64.7
MsG0480021923.01.T01 MTR_5g012080 29.714 175 94 8 42 206 1 156 2.19e-11 63.9
MsG0480021923.01.T01 MTR_4g101680 29.480 173 95 7 42 206 1 154 2.38e-11 63.9
MsG0480021923.01.T01 MTR_8g059170 31.469 143 80 4 48 189 14 139 3.05e-11 63.5
MsG0480021923.01.T01 MTR_2g080010 32.237 152 81 7 46 193 13 146 4.01e-11 63.2
MsG0480021923.01.T01 MTR_8g063550 29.143 175 98 7 45 211 3 159 4.15e-11 63.5
MsG0480021923.01.T01 MTR_8g099750 30.000 150 83 7 43 189 9 139 4.80e-11 61.6
MsG0480021923.01.T01 MTR_8g063550 29.143 175 98 7 45 211 3 159 4.80e-11 63.2
MsG0480021923.01.T01 MTR_8g063550 29.143 175 98 7 45 211 3 159 6.40e-11 62.4
MsG0480021923.01.T01 MTR_1g069805 30.286 175 95 9 41 208 2 156 6.99e-11 62.0
MsG0480021923.01.T01 MTR_8g094580 30.345 145 82 5 48 191 7 133 9.73e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021923.01.T01 AT4G28500 79.188 197 40 1 21 217 33 228 1.70e-114 332
MsG0480021923.01.T01 AT1G28470 78.974 195 38 2 23 215 50 243 1.37e-108 317
MsG0480021923.01.T01 AT4G29230 70.792 202 47 2 24 218 29 225 1.48e-98 296
MsG0480021923.01.T01 AT4G29230 70.792 202 47 2 24 218 29 225 5.88e-98 296
MsG0480021923.01.T01 AT4G29230 70.297 202 47 2 24 218 29 224 4.81e-97 294
MsG0480021923.01.T01 AT5G56620 65.517 203 56 4 26 218 25 223 3.93e-90 274
MsG0480021923.01.T01 AT5G56620 65.517 203 56 4 26 218 25 223 4.21e-90 273
MsG0480021923.01.T01 AT5G56620 65.517 203 56 4 26 218 25 223 8.98e-90 272
MsG0480021923.01.T01 AT1G25580 56.842 190 71 4 24 213 37 215 3.42e-65 211
MsG0480021923.01.T01 AT5G14490 51.064 188 87 3 26 213 36 218 9.83e-56 181
MsG0480021923.01.T01 AT5G14490 51.064 188 87 3 26 213 36 218 1.81e-55 182
MsG0480021923.01.T01 AT5G14490 51.064 188 87 3 26 213 39 221 2.42e-55 182
MsG0480021923.01.T01 AT5G14490 51.064 188 87 3 26 213 39 221 3.01e-55 182
MsG0480021923.01.T01 AT3G01600 46.445 211 97 4 15 210 7 216 4.23e-51 172
MsG0480021923.01.T01 AT3G04060 31.667 180 98 6 40 211 12 174 5.38e-15 74.3
MsG0480021923.01.T01 AT5G61430 34.965 143 75 5 48 189 16 141 9.99e-15 73.6
MsG0480021923.01.T01 AT5G18270 32.778 180 94 7 41 211 14 175 2.09e-14 72.8
MsG0480021923.01.T01 AT5G18270 32.778 180 94 7 41 211 14 175 3.68e-14 72.0
MsG0480021923.01.T01 AT3G18400 31.902 163 90 5 48 206 5 150 4.87e-14 71.6
MsG0480021923.01.T01 AT5G53950 31.959 194 97 9 37 218 9 179 1.02e-13 70.9
MsG0480021923.01.T01 AT1G02230 31.638 177 95 7 49 218 4 161 2.07e-13 70.1
MsG0480021923.01.T01 AT5G07680 30.769 169 93 5 48 209 3 154 2.54e-13 69.3
MsG0480021923.01.T01 AT5G07680 30.769 169 93 5 48 209 17 168 2.59e-13 69.3
MsG0480021923.01.T01 AT4G36160 32.738 168 86 7 47 206 9 157 3.22e-13 69.7
MsG0480021923.01.T01 AT4G36160 32.738 168 86 7 47 206 9 157 3.22e-13 69.7
MsG0480021923.01.T01 AT4G36160 32.738 168 86 7 47 206 13 161 3.66e-13 69.3
MsG0480021923.01.T01 AT1G01720 32.000 150 83 5 42 190 1 132 4.62e-13 68.6
MsG0480021923.01.T01 AT5G04410 30.726 179 94 7 41 209 2 160 4.86e-13 69.3
MsG0480021923.01.T01 AT2G24430 30.588 170 95 6 47 210 15 167 6.90e-13 68.2
MsG0480021923.01.T01 AT2G24430 30.588 170 95 6 47 210 15 167 6.90e-13 68.2
MsG0480021923.01.T01 AT1G02220 33.566 143 74 6 49 188 4 128 1.02e-12 68.2
MsG0480021923.01.T01 AT1G12260 30.058 173 94 8 42 206 1 154 2.95e-12 66.6
MsG0480021923.01.T01 AT1G12260 30.058 173 94 8 42 206 1 154 3.37e-12 66.2
MsG0480021923.01.T01 AT5G46590 30.539 167 90 8 48 205 6 155 5.58e-12 65.5
MsG0480021923.01.T01 AT2G33480 30.872 149 82 6 48 195 15 143 2.00e-11 63.5
MsG0480021923.01.T01 AT5G46590 32.000 150 81 7 48 193 6 138 2.01e-11 63.5
MsG0480021923.01.T01 AT2G33480 29.878 164 92 7 48 208 15 158 2.08e-11 63.5
MsG0480021923.01.T01 AT1G65910 32.075 159 81 9 48 199 6 144 2.60e-11 64.3
MsG0480021923.01.T01 AT5G08790 31.250 144 80 5 48 190 7 132 2.72e-11 63.2
MsG0480021923.01.T01 AT1G62700 29.480 173 95 7 42 206 1 154 5.15e-11 63.2
MsG0480021923.01.T01 AT1G62700 29.480 173 95 7 42 206 1 154 5.15e-11 63.2
MsG0480021923.01.T01 AT1G34190 31.293 147 79 6 51 193 19 147 5.38e-11 63.2
MsG0480021923.01.T01 AT5G13180 33.562 146 72 8 48 189 14 138 6.69e-11 61.6
MsG0480021923.01.T01 AT1G76420 29.834 181 94 8 47 216 21 179 8.80e-11 62.0
MsG0480021923.01.T01 AT3G12977 25.103 243 123 9 48 276 18 215 9.94e-11 61.6

Find 100 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATTATACAATAAGATAT+TGG 0.241829 4:+66033674 None:intergenic
ATTATGAAAGACTCTATTCT+TGG 0.244819 4:-66028976 MsG0480021923.01.T01:CDS
CCTACTCTTGAAGGAGAAAA+TGG 0.244985 4:-66032743 MsG0480021923.01.T01:CDS
AGAAAAGATATCTCTATAAA+TGG 0.286637 4:-66033387 MsG0480021923.01.T01:five_prime_UTR
CTTGTACTTTACACAAACTA+TGG 0.313224 4:-66029141 MsG0480021923.01.T01:CDS
TTCATTTGAAAACTATACTA+TGG 0.315540 4:-66028573 MsG0480021923.01.T01:three_prime_UTR
TCCTACAGATCAAGAGATTC+TGG 0.320488 4:-66032831 MsG0480021923.01.T01:CDS
GAAAATGGTGGGGAAGAATT+AGG 0.326347 4:-66028605 MsG0480021923.01.T01:three_prime_UTR
GAAAGCCAGAGAAAACAAAT+TGG 0.326530 4:-66029110 MsG0480021923.01.T01:CDS
TCAAGAGATTCTGGAACATT+TGG 0.340256 4:-66032822 MsG0480021923.01.T01:CDS
AGATTATACAATAAGATATT+GGG 0.356598 4:+66033675 None:intergenic
TATATACCTGGTAGTTTCTC+TGG 0.365477 4:+66032704 None:intergenic
TTAATTAAGGAACCTGATCT+TGG 0.368798 4:+66033228 None:intergenic
GCTCTAGTTAGGATGGAAAA+TGG 0.378110 4:-66028620 MsG0480021923.01.T01:three_prime_UTR
CCATCCTAACTAGAGCATAT+AGG 0.392802 4:+66028627 None:intergenic
GGTGAAAGAAATGGCGGATC+AGG 0.399922 4:+66029310 None:intergenic
ATTGAAGGGTAATTATTAAG+AGG 0.400064 4:-66028747 MsG0480021923.01.T01:three_prime_UTR
ATGTTAATCTTTACCAAGCA+TGG 0.400367 4:+66028416 None:intergenic
TTCACTCCAGCTGGCAATCC+AGG 0.423620 4:+66032860 None:intergenic
CACTTGAATCAAGGATTGAA+TGG 0.428533 4:+66028793 None:intergenic
AAATATTTCAGCAGTGTCAT+AGG 0.430428 4:-66028453 MsG0480021923.01.T01:three_prime_UTR
CATAGTTTGTGTAAAGTACA+AGG 0.433161 4:+66029142 None:intergenic
ATAACCTATATGCTCTAGTT+AGG 0.436331 4:-66028631 MsG0480021923.01.T01:three_prime_UTR
ATCATATATGTGCCCATGCT+TGG 0.437157 4:-66028429 MsG0480021923.01.T01:three_prime_UTR
GAGTTCATCCCTACTCTTGA+AGG 0.437508 4:-66032752 MsG0480021923.01.T01:CDS
GCTATAGAAGATTAAATTGA+AGG 0.437520 4:-66028762 MsG0480021923.01.T01:three_prime_UTR
TGATCCGCCATTTCTTTCAC+CGG 0.439231 4:-66029308 MsG0480021923.01.T01:CDS
CTTGTCCACCACTTGAATCA+AGG 0.444328 4:+66028784 None:intergenic
TGTTCCTGTTGTGTATGCCT+TGG 0.446215 4:+66029281 None:intergenic
CTATTGCTATATAAAACAAA+TGG 0.460148 4:+66033428 None:intergenic
GAAACCCGTTGGCATAAAAC+AGG 0.460349 4:-66029216 MsG0480021923.01.T01:CDS
AACTTGGAATTGTTGTAGAC+TGG 0.461374 4:+66029183 None:intergenic
TCTTCAGGAGTAAGCAAAGA+TGG 0.468322 4:-66029333 MsG0480021923.01.T01:intron
CCATCCAAGGCATACACAAC+AGG 0.469431 4:-66029285 MsG0480021923.01.T01:CDS
AAATAAAAGTGTCCTCTCGC+TGG 0.480671 4:+66028500 None:intergenic
CTCTATAAATGGAATGATTG+AGG 0.481258 4:-66033376 MsG0480021923.01.T01:five_prime_UTR
GAATTACCACCACACTGTCT+TGG 0.486516 4:+66029003 None:intergenic
TTGTGTATGCCTTGGATGGC+CGG 0.487616 4:+66029289 None:intergenic
GACTTACCTGGATTGCCAGC+TGG 0.488076 4:-66032866 MsG0480021923.01.T01:CDS
AATTTCATATCATTTGATCA+AGG 0.491183 4:-66028868 MsG0480021923.01.T01:CDS
GTGATGCATCAGTATCATCT+TGG 0.493893 4:-66029087 MsG0480021923.01.T01:CDS
CCTATATGCTCTAGTTAGGA+TGG 0.494711 4:-66028627 MsG0480021923.01.T01:three_prime_UTR
TTGAGTTTGATAGAAAACTT+TGG 0.497854 4:+66029026 None:intergenic
AAAGCCAGAGAAAACAAATT+GGG 0.499778 4:-66029109 MsG0480021923.01.T01:CDS
AATGAAAATAATTAGGGTGG+TGG 0.500551 4:-66032896 MsG0480021923.01.T01:intron
TTAATAAAAGTGATAGAGAA+AGG 0.502532 4:+66033524 None:intergenic
TTAAGAGGCCAATAATGAAA+AGG 0.502910 4:-66028732 MsG0480021923.01.T01:three_prime_UTR
ATTTCATATCATTTGATCAA+GGG 0.503525 4:-66028867 MsG0480021923.01.T01:CDS
TGATGCATCAGTATCATCTT+GGG 0.507024 4:-66029086 MsG0480021923.01.T01:CDS
TCATATCAAAGGCCAAGATC+AGG 0.513679 4:-66033240 MsG0480021923.01.T01:intron
GGATCAAACTTCACTCCAGC+TGG 0.519384 4:+66032851 None:intergenic
AGAACGGTTGAGTTAAGAGA+AGG 0.519523 4:+66033479 None:intergenic
TAGTTAGGATGGAAAATGGT+GGG 0.521369 4:-66028616 MsG0480021923.01.T01:three_prime_UTR
CATTCAATCCTTGATTCAAG+TGG 0.522358 4:-66028792 MsG0480021923.01.T01:exon
AATAATAGCATCACAGTGGA+TGG 0.523592 4:-66033305 MsG0480021923.01.T01:CDS
GAGCATTGCTAGACCTATGT+TGG 0.524291 4:+66028842 None:intergenic
GGGATGAACTCATCAATTAG+AGG 0.528142 4:+66032764 None:intergenic
TACAACAATTCCAAGTTGAA+AGG 0.529222 4:-66029177 MsG0480021923.01.T01:CDS
TTGATCAAGGGAACCAACAT+AGG 0.533507 4:-66028855 MsG0480021923.01.T01:CDS
TGGATGGCCGGTGAAAGAAA+TGG 0.540700 4:+66029301 None:intergenic
TCTGGAACATTTGGAAGCAA+AGG 0.544631 4:-66032813 MsG0480021923.01.T01:CDS
CATCACAGTGGATGGAAGAA+AGG 0.544845 4:-66033297 MsG0480021923.01.T01:CDS
GGTGGAATTAATGACTTACC+TGG 0.548384 4:-66032878 MsG0480021923.01.T01:CDS
TCAATCCTTGATTCAAGTGG+TGG 0.549183 4:-66028789 MsG0480021923.01.T01:exon
CCTGTTGTGTATGCCTTGGA+TGG 0.549971 4:+66029285 None:intergenic
TGTTAATCTTTACCAAGCAT+GGG 0.557790 4:+66028417 None:intergenic
AGTGATGAAGAAGAGAAAGA+AGG 0.559824 4:-66029063 MsG0480021923.01.T01:CDS
GGAACAGAAACTAAAAGAGA+AGG 0.560294 4:+66033449 None:intergenic
TTTCTTTCACCGGCCATCCA+AGG 0.565155 4:-66029298 MsG0480021923.01.T01:CDS
GAAGGGTCAAAGTGGGAATG+AGG 0.565748 4:-66028944 MsG0480021923.01.T01:CDS
TATACAATAAGATATTGGGT+TGG 0.570493 4:+66033679 None:intergenic
AAGAGAAGGGACAGAGAGAA+CGG 0.572639 4:+66033463 None:intergenic
AAACTATGAAGGGTCAAAGT+GGG 0.577178 4:-66028951 MsG0480021923.01.T01:CDS
AGTGGGAATGAGGTAATCAA+TGG 0.579023 4:-66028934 MsG0480021923.01.T01:CDS
TCCAGAATCTCTTGATCTGT+AGG 0.586213 4:+66032830 None:intergenic
ACATGTGGTCATCATATCAA+AGG 0.587928 4:-66033251 MsG0480021923.01.T01:CDS
CTATAGAAGATTAAATTGAA+GGG 0.588583 4:-66028761 MsG0480021923.01.T01:three_prime_UTR
TGCAACTACTTGTTGAAGTG+TGG 0.591394 4:+66033588 None:intergenic
GAACAGAAACTAAAAGAGAA+GGG 0.591832 4:+66033450 None:intergenic
ACTCATCCAGAGAAACTACC+AGG 0.603901 4:-66032710 MsG0480021923.01.T01:intron
AAAACTATGAAGGGTCAAAG+TGG 0.604850 4:-66028952 MsG0480021923.01.T01:CDS
GTACATTCGGATCACGAGGA+CGG 0.605336 4:-66029243 MsG0480021923.01.T01:CDS
TTCAACAAGTAGTTGCATGA+GGG 0.606047 4:-66033582 MsG0480021923.01.T01:five_prime_UTR
AGTTAGGATGGAAAATGGTG+GGG 0.615663 4:-66028615 MsG0480021923.01.T01:three_prime_UTR
GGATGAACTCATCAATTAGA+GGG 0.619021 4:+66032765 None:intergenic
TCAACAAGTAGTTGCATGAG+GGG 0.632583 4:-66033581 MsG0480021923.01.T01:five_prime_UTR
GCAACTACTTGTTGAAGTGT+GGG 0.633027 4:+66033589 None:intergenic
ATTAGAACTTGTCTCACATG+TGG 0.635438 4:-66033266 MsG0480021923.01.T01:CDS
TTGTTGAAGACTCCAGCGAG+AGG 0.639755 4:-66028512 MsG0480021923.01.T01:three_prime_UTR
CTACTTGTTGAAGTGTGGGA+AGG 0.641423 4:+66033593 None:intergenic
CTAGTTAGGATGGAAAATGG+TGG 0.641734 4:-66028617 MsG0480021923.01.T01:three_prime_UTR
AGGACGGAAGCGAAACCCGT+TGG 0.648723 4:-66029227 MsG0480021923.01.T01:CDS
CTTCAACAAGTAGTTGCATG+AGG 0.652525 4:-66033583 MsG0480021923.01.T01:five_prime_UTR
AACATTTGGAAGCAAAGGTG+AGG 0.661754 4:-66032808 MsG0480021923.01.T01:CDS
CAAAGTATATATTAATACTG+AGG 0.662016 4:-66028702 MsG0480021923.01.T01:three_prime_UTR
AAAGGTACATTCGGATCACG+AGG 0.690604 4:-66029247 MsG0480021923.01.T01:CDS
AAACAATAATAGCATCACAG+TGG 0.704092 4:-66033309 MsG0480021923.01.T01:CDS
ATGGCCGGTGAAAGAAATGG+CGG 0.706386 4:+66029304 None:intergenic
CAAACTCAACCAAGACAGTG+TGG 0.711030 4:-66029012 MsG0480021923.01.T01:CDS
ACTCAACCAAGACAGTGTGG+TGG 0.739755 4:-66029009 MsG0480021923.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+AGG + Chr4:66029544-66029525 None:intergenic 0.0%
!!! AAATATAATTTTTATATTTT+TGG + Chr4:66029725-66029744 None:intergenic 0.0%
!! TACATTAAATATATATAAGT+TGG + Chr4:66029646-66029665 None:intergenic 10.0%
!! TTTCAAGATAAATTAATAAA+AGG - Chr4:66030705-66030724 MsG0480021923.01.T01:intron 10.0%
!!! AAAACTATTTTTCAATAAAT+TGG + Chr4:66030782-66030801 None:intergenic 10.0%
!!! ATTTAATTTACTCAAAAAAT+TGG - Chr4:66032448-66032467 MsG0480021923.01.T01:intron 10.0%
!! AAATTAACATTTCAATATTC+AGG - Chr4:66030141-66030160 MsG0480021923.01.T01:intron 15.0%
!! AAATTGAATTATATTTCTTC+AGG - Chr4:66032719-66032738 MsG0480021923.01.T01:CDS 15.0%
!! AATGATAATAATGTTTATCA+TGG + Chr4:66028876-66028895 None:intergenic 15.0%
!! ACATATTTAACCAAAAATAA+AGG + Chr4:66029495-66029514 None:intergenic 15.0%
!! AGATTATACAATAAGATATT+GGG + Chr4:66028395-66028414 None:intergenic 15.0%
!! ATAAGATTCATTGATATAAA+AGG - Chr4:66031029-66031048 MsG0480021923.01.T01:intron 15.0%
!! CAATATTCATATAAACTTAA+TGG + Chr4:66031490-66031509 None:intergenic 15.0%
!! CATTAAGTTTATATGAATAT+TGG - Chr4:66031488-66031507 MsG0480021923.01.T01:intron 15.0%
!! CTAAGATTATAAGAATTATT+AGG + Chr4:66030759-66030778 None:intergenic 15.0%
!! GATATCAATGAAAATAATTA+GGG - Chr4:66029165-66029184 MsG0480021923.01.T01:CDS 15.0%
!! TAAGATTCATTGATATAAAA+GGG - Chr4:66031030-66031049 MsG0480021923.01.T01:intron 15.0%
!! TGAAAATAAAATTGTAATGT+TGG + Chr4:66031303-66031322 None:intergenic 15.0%
!! TGATATCAATGAAAATAATT+AGG - Chr4:66029164-66029183 MsG0480021923.01.T01:CDS 15.0%
!! TTGCAATTAAAAAAATTGAA+TGG + Chr4:66031566-66031585 None:intergenic 15.0%
!!! AAAAAAAGTTATTAGTTTCT+AGG + Chr4:66029104-66029123 None:intergenic 15.0%
!!! AAAGTGAAATTTATTTTTAG+AGG - Chr4:66029896-66029915 MsG0480021923.01.T01:intron 15.0%
!!! AACTTTTTTTTCTTTTAGTT+TGG - Chr4:66029114-66029133 MsG0480021923.01.T01:CDS 15.0%
!!! AAGTGAAATTTATTTTTAGA+GGG - Chr4:66029897-66029916 MsG0480021923.01.T01:intron 15.0%
!!! AATAAGTTTACCTTTATTTT+TGG - Chr4:66029482-66029501 MsG0480021923.01.T01:intron 15.0%
!!! AATTGATGATGTTTTTTTTA+AGG - Chr4:66030188-66030207 MsG0480021923.01.T01:intron 15.0%
!!! AGTCCTTATTTTAATTTTAT+AGG - Chr4:66028958-66028977 MsG0480021923.01.T01:CDS 15.0%
!!! AGTTTTATTTATCTTAGTTT+GGG + Chr4:66031985-66032004 None:intergenic 15.0%
!!! ATTGATGATGTTTTTTTTAA+GGG - Chr4:66030189-66030208 MsG0480021923.01.T01:intron 15.0%
!!! GTCCTTATTTTAATTTTATA+GGG - Chr4:66028959-66028978 MsG0480021923.01.T01:CDS 15.0%
!!! TAGTTTTATTTATCTTAGTT+TGG + Chr4:66031986-66032005 None:intergenic 15.0%
!!! TTAGTATTTTTTTTATGTTG+CGG - Chr4:66031697-66031716 MsG0480021923.01.T01:intron 15.0%
!!! TTATGTATTTAATTTGAGTT+CGG - Chr4:66032301-66032320 MsG0480021923.01.T01:intron 15.0%
!!! TTTATTTTCATTGAATAACA+TGG - Chr4:66029971-66029990 MsG0480021923.01.T01:intron 15.0%
!!! TTTTTATTAAGTAAGATACA+TGG + Chr4:66030855-66030874 None:intergenic 15.0%
!! AACTAAAGAAAATATGATAG+AGG - Chr4:66032001-66032020 MsG0480021923.01.T01:intron 20.0%
!! AATATTCAGGCTAATAATAA+TGG - Chr4:66030154-66030173 MsG0480021923.01.T01:intron 20.0%
!! AATTTCATATCATTTGATCA+AGG - Chr4:66033199-66033218 MsG0480021923.01.T01:intron 20.0%
!! ACAAACTCTAATATCAAATT+AGG + Chr4:66031961-66031980 None:intergenic 20.0%
!! ACAACTACTTTAATAGATTA+TGG + Chr4:66030378-66030397 None:intergenic 20.0%
!! ACATAGTTTACTTAAAATGA+TGG - Chr4:66029838-66029857 MsG0480021923.01.T01:intron 20.0%
!! AGAAAAGATATCTCTATAAA+TGG - Chr4:66028680-66028699 MsG0480021923.01.T01:three_prime_UTR 20.0%
!! AGTTATGGGTTTATAATTTA+GGG + Chr4:66031892-66031911 None:intergenic 20.0%
!! ATGCGAATTAATGATAAATA+AGG - Chr4:66030414-66030433 MsG0480021923.01.T01:intron 20.0%
!! ATTAAAAAAATTGAATGGAG+AGG + Chr4:66031561-66031580 None:intergenic 20.0%
!! ATTATTAAAAGGGTAACTAA+AGG - Chr4:66031595-66031614 MsG0480021923.01.T01:intron 20.0%
!! ATTTCATATCATTTGATCAA+GGG - Chr4:66033200-66033219 MsG0480021923.01.T01:intron 20.0%
!! CAAACTCTAATATCAAATTA+GGG + Chr4:66031960-66031979 None:intergenic 20.0%
!! CAAAGTATATATTAATACTG+AGG - Chr4:66033365-66033384 MsG0480021923.01.T01:five_prime_UTR 20.0%
!! CGTAAACTCAAATAAAAAAT+GGG - Chr4:66032027-66032046 MsG0480021923.01.T01:intron 20.0%
!! CTATAGAAGATTAAATTGAA+GGG - Chr4:66033306-66033325 MsG0480021923.01.T01:CDS 20.0%
!! CTATTGCTATATAAAACAAA+TGG + Chr4:66028642-66028661 None:intergenic 20.0%
!! GAGATTATACAATAAGATAT+TGG + Chr4:66028396-66028415 None:intergenic 20.0%
!! GTAAACTCAAATAAAAAATG+GGG - Chr4:66032028-66032047 MsG0480021923.01.T01:intron 20.0%
!! GTCCCTATAAAATTAAAATA+AGG + Chr4:66028964-66028983 None:intergenic 20.0%
!! GTTTACATTTCTTACATTAT+AGG + Chr4:66031368-66031387 None:intergenic 20.0%
!! TAAACTCAAATAAAAAATGG+GGG - Chr4:66032029-66032048 MsG0480021923.01.T01:intron 20.0%
!! TATTAAAGTAGTTGTAACTT+TGG - Chr4:66030383-66030402 MsG0480021923.01.T01:intron 20.0%
!! TATTGTATGTAATATATACC+TGG + Chr4:66029378-66029397 None:intergenic 20.0%
!! TCGTAAACTCAAATAAAAAA+TGG - Chr4:66032026-66032045 MsG0480021923.01.T01:intron 20.0%
!! TGAAATTAAAATGATAGAGA+AGG + Chr4:66030116-66030135 None:intergenic 20.0%
!! TGTGATTTAATTAGCATAAA+TGG + Chr4:66030088-66030107 None:intergenic 20.0%
!! TTAATAAAAGTGATAGAGAA+AGG + Chr4:66028546-66028565 None:intergenic 20.0%
!! TTCATTTGAAAACTATACTA+TGG - Chr4:66033494-66033513 MsG0480021923.01.T01:five_prime_UTR 20.0%
!! TTGAGTAAATTAAATGAGTT+CGG + Chr4:66032443-66032462 None:intergenic 20.0%
!!! AATATTGACATTTTACTATG+TGG - Chr4:66032238-66032257 MsG0480021923.01.T01:intron 20.0%
!!! ATATAAGTTGGCTTAAAATA+GGG + Chr4:66029634-66029653 None:intergenic 20.0%
!!! ATGAATTTGATAACAAATCT+GGG + Chr4:66032118-66032137 None:intergenic 20.0%
!!! ATGGTGATTGAAAATTTTAT+AGG + Chr4:66029604-66029623 None:intergenic 20.0%
!!! ATTTGTTATCAAATTCATCA+CGG - Chr4:66032120-66032139 MsG0480021923.01.T01:intron 20.0%
!!! ATTTTTTATTTGAGTTTACG+AGG + Chr4:66032027-66032046 None:intergenic 20.0%
!!! CATTCTCTATTTAGATTTTT+AGG - Chr4:66028415-66028434 MsG0480021923.01.T01:three_prime_UTR 20.0%
!!! TATATAAGTTGGCTTAAAAT+AGG + Chr4:66029635-66029654 None:intergenic 20.0%
!!! TATGTATTTAATTTGAGTTC+GGG - Chr4:66032302-66032321 MsG0480021923.01.T01:intron 20.0%
!!! TTTATATGAATATTGGTCTA+GGG - Chr4:66031495-66031514 MsG0480021923.01.T01:intron 20.0%
!!! TTTTAACTCGATTTTAATGT+TGG + Chr4:66031228-66031247 None:intergenic 20.0%
!!! TTTTTTGTCTAATTGTGAAT+TGG + Chr4:66032540-66032559 None:intergenic 20.0%
! AAACATCAAAAGAAAAGGAA+TGG - Chr4:66030505-66030524 MsG0480021923.01.T01:intron 25.0%
! AAACATCAAAAGAAAAGGAA+TGG + Chr4:66030524-66030505 None:intergenic 25.0%
! AAATTCAAACCAAACAAATG+CGG - Chr4:66031150-66031169 MsG0480021923.01.T01:intron 25.0%
! AACATTGCATATATTATGCA+AGG - Chr4:66030977-66030996 MsG0480021923.01.T01:intron 25.0%
! AAGTGCTTAAAAAATAGACA+AGG + Chr4:66030558-66030577 None:intergenic 25.0%
! AATAGCTTGATAAATAAGCT+AGG + Chr4:66032661-66032680 None:intergenic 25.0%
! AATCAACAGAAAGTCAATAT+TGG - Chr4:66032198-66032217 MsG0480021923.01.T01:intron 25.0%
! AGCTAAAACATCAAAAGAAA+AGG - Chr4:66030500-66030519 MsG0480021923.01.T01:intron 25.0%
! AGTGCTTAAAAAATAGACAA+GGG + Chr4:66030557-66030576 None:intergenic 25.0%
! ATCAATGAAAATAATTAGGG+TGG - Chr4:66029168-66029187 MsG0480021923.01.T01:CDS 25.0%
! ATCTAACGGTTAAGTATAAA+TGG - Chr4:66032394-66032413 MsG0480021923.01.T01:intron 25.0%
! ATTATGAAAGACTCTATTCT+TGG - Chr4:66033091-66033110 MsG0480021923.01.T01:intron 25.0%
! ATTCTTGGAAAAACTATGAA+GGG - Chr4:66033106-66033125 MsG0480021923.01.T01:intron 25.0%
! ATTGAAGGGTAATTATTAAG+AGG - Chr4:66033320-66033339 MsG0480021923.01.T01:CDS 25.0%
! CTTAAAATAGGGACAAAAAA+TGG + Chr4:66029623-66029642 None:intergenic 25.0%
! GAGTTATGGGTTTATAATTT+AGG + Chr4:66031893-66031912 None:intergenic 25.0%
! GAGTTCAAACTAATAGAAAA+AGG - Chr4:66032501-66032520 MsG0480021923.01.T01:intron 25.0%
! GCTAATAATAATGGTTAAGA+GGG - Chr4:66030163-66030182 MsG0480021923.01.T01:intron 25.0%
! GCTATAGAAGATTAAATTGA+AGG - Chr4:66033305-66033324 MsG0480021923.01.T01:CDS 25.0%
! GTAGAGACTAAATTAAAAAG+TGG - Chr4:66029066-66029085 MsG0480021923.01.T01:CDS 25.0%
! GTTATGGGTTTATAATTTAG+GGG + Chr4:66031891-66031910 None:intergenic 25.0%
! TAGAGACTAAATTAAAAACG+TGG - Chr4:66031331-66031350 MsG0480021923.01.T01:intron 25.0%
! TAGTACAAGACAAATAGTTT+AGG - Chr4:66032589-66032608 MsG0480021923.01.T01:intron 25.0%
! TATTCTTGGAAAAACTATGA+AGG - Chr4:66033105-66033124 MsG0480021923.01.T01:intron 25.0%
! TGAGTAAATTAAATGAGTTC+GGG + Chr4:66032442-66032461 None:intergenic 25.0%
! TTATAGGTACTAAAAGTTGA+AGG + Chr4:66029588-66029607 None:intergenic 25.0%
! TTGAGTTTGATAGAAAACTT+TGG + Chr4:66033044-66033063 None:intergenic 25.0%
! TTGGCAGTAAAAATTGATAT+TGG + Chr4:66029706-66029725 None:intergenic 25.0%
!! AAAAAGAAGAAAGGTACATT+CGG - Chr4:66032811-66032830 MsG0480021923.01.T01:CDS 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG + Chr4:66029575-66029594 None:intergenic 25.0%
!! CACTAAAACATCAAAAGTTT+TGG + Chr4:66030314-66030333 None:intergenic 25.0%
!! GATGAATTTGATAACAAATC+TGG + Chr4:66032119-66032138 None:intergenic 25.0%
!! GTTTATATGAATATTGGTCT+AGG - Chr4:66031494-66031513 MsG0480021923.01.T01:intron 25.0%
!! GTTTTGTCAAATATCAATGA+GGG - Chr4:66032081-66032100 MsG0480021923.01.T01:intron 25.0%
!! TCTACACTTTCAAACATTTT+TGG - Chr4:66031911-66031930 MsG0480021923.01.T01:intron 25.0%
!! TTATATGAATATTGGTCTAG+GGG - Chr4:66031496-66031515 MsG0480021923.01.T01:intron 25.0%
!! TTTCTATTAGTTTGAACTCA+AGG + Chr4:66032500-66032519 None:intergenic 25.0%
!! TTTCTTTTTATACAACCGTA+TGG + Chr4:66031775-66031794 None:intergenic 25.0%
!!! ATAGTTTAGGATGCTTTTTA+AGG - Chr4:66032602-66032621 MsG0480021923.01.T01:intron 25.0%
!!! ATTTTTTTTATGTTGCGGTT+TGG - Chr4:66031702-66031721 MsG0480021923.01.T01:intron 25.0%
!!! CTCTAAAACATCAAAAGAAA+AGG + Chr4:66030278-66030297 None:intergenic 25.0%
!!! TAAATTCTCCTTCACTTTTT+TGG + Chr4:66028451-66028470 None:intergenic 25.0%
!!! TCTTTTGATGTTTTAGCTTT+TGG + Chr4:66030498-66030517 None:intergenic 25.0%
!!! TGAAAACGGAAATTTTTTGA+AGG - Chr4:66029869-66029888 MsG0480021923.01.T01:intron 25.0%
!!! TGATGCTATTATTGTTTTGA+GGG + Chr4:66028755-66028774 None:intergenic 25.0%
!!! TTGACTTTCTGTTGATTTAT+AGG + Chr4:66032195-66032214 None:intergenic 25.0%
!!! TTTTTTGTAACCTTTCAACT+TGG + Chr4:66032903-66032922 None:intergenic 25.0%
AAACAATAATAGCATCACAG+TGG - Chr4:66028758-66028777 MsG0480021923.01.T01:three_prime_UTR 30.0%
AAAGCCAGAGAAAACAAATT+GGG - Chr4:66032958-66032977 MsG0480021923.01.T01:intron 30.0%
AAATATTTCAGCAGTGTCAT+AGG - Chr4:66033614-66033633 MsG0480021923.01.T01:five_prime_UTR 30.0%
AATGAAAATAATTAGGGTGG+TGG - Chr4:66029171-66029190 MsG0480021923.01.T01:CDS 30.0%
AGGAACAAGAAAAAGAAGAA+AGG - Chr4:66032802-66032821 MsG0480021923.01.T01:CDS 30.0%
AGGGACTAAATTTAATGACT+AGG - Chr4:66028978-66028997 MsG0480021923.01.T01:CDS 30.0%
ATAACCTATATGCTCTAGTT+AGG - Chr4:66033436-66033455 MsG0480021923.01.T01:five_prime_UTR 30.0%
ATAAGCTAGGTACAAAGTTA+TGG + Chr4:66032648-66032667 None:intergenic 30.0%
ATCAAAAGAAAAGGAATGGA+GGG - Chr4:66030509-66030528 MsG0480021923.01.T01:intron 30.0%
ATCAAAAGAAAAGGAATGGA+GGG + Chr4:66030528-66030509 None:intergenic 30.0%
ATCTCCATTTACTCCATTTA+AGG - Chr4:66032343-66032362 MsG0480021923.01.T01:intron 30.0%
ATGTTAATCTTTACCAAGCA+TGG + Chr4:66033654-66033673 None:intergenic 30.0%
CAAACCTTAAATGGAGTAAA+TGG + Chr4:66032350-66032369 None:intergenic 30.0%
CAGGTTCCTTAATTAAAACT+TGG - Chr4:66028846-66028865 MsG0480021923.01.T01:CDS 30.0%
CATTAAAATAGCAATGCCAT+GGG + Chr4:66032172-66032191 None:intergenic 30.0%
CTCTATAAATGGAATGATTG+AGG - Chr4:66028691-66028710 MsG0480021923.01.T01:three_prime_UTR 30.0%
CTTGTACTTTACACAAACTA+TGG - Chr4:66032926-66032945 MsG0480021923.01.T01:intron 30.0%
GAACAGAAACTAAAAGAGAA+GGG + Chr4:66028620-66028639 None:intergenic 30.0%
GAATGATTGAGGAAAAAAAG+AGG - Chr4:66028702-66028721 MsG0480021923.01.T01:three_prime_UTR 30.0%
GAGGAAAAAAAGAGGAAAAA+AGG - Chr4:66028710-66028729 MsG0480021923.01.T01:three_prime_UTR 30.0%
GGCTAATAATAATGGTTAAG+AGG - Chr4:66030162-66030181 MsG0480021923.01.T01:intron 30.0%
TAAGCTAGGTACAAAGTTAT+GGG + Chr4:66032647-66032666 None:intergenic 30.0%
TGATGGAACAAAAGTGAAAA+CGG - Chr4:66029855-66029874 MsG0480021923.01.T01:intron 30.0%
TGTTAATCTTTACCAAGCAT+GGG + Chr4:66033653-66033672 None:intergenic 30.0%
TTAAGAGGCCAATAATGAAA+AGG - Chr4:66033335-66033354 MsG0480021923.01.T01:CDS 30.0%
TTAATTAAGGAACCTGATCT+TGG + Chr4:66028842-66028861 None:intergenic 30.0%
! AATTTGATAACAAATCTGGG+TGG + Chr4:66032115-66032134 None:intergenic 30.0%
! ATGGATCAGATTCTTTTGTT+AGG - Chr4:66033513-66033532 MsG0480021923.01.T01:five_prime_UTR 30.0%
! CATAGTTTGTGTAAAGTACA+AGG + Chr4:66032928-66032947 None:intergenic 30.0%
! CATTTACTCCATTTAAGGTT+TGG - Chr4:66032348-66032367 MsG0480021923.01.T01:intron 30.0%
! CGTTGAAGTAACATTTTTGT+AGG - Chr4:66030051-66030070 MsG0480021923.01.T01:intron 30.0%
! GTTCATCTCCTTTTCATTAT+TGG + Chr4:66033346-66033365 None:intergenic 30.0%
! GTTTGAAAGTGTAGAGTTAT+GGG + Chr4:66031906-66031925 None:intergenic 30.0%
! TACAACAATTCCAAGTTGAA+AGG - Chr4:66032890-66032909 MsG0480021923.01.T01:intron 30.0%
! TATATGAATATTGGTCTAGG+GGG - Chr4:66031497-66031516 MsG0480021923.01.T01:intron 30.0%
! TGTTTGAAAGTGTAGAGTTA+TGG + Chr4:66031907-66031926 None:intergenic 30.0%
! TTCTATTTTCTTTTTGTGCG+TGG - Chr4:66029762-66029781 MsG0480021923.01.T01:intron 30.0%
! TTTTACCTGTTTTATGCCAA+CGG + Chr4:66032859-66032878 None:intergenic 30.0%
! TTTTATACAACCGTATGGTT+TGG + Chr4:66031770-66031789 None:intergenic 30.0%
!! GGTTTTGTCAAATATCAATG+AGG - Chr4:66032080-66032099 MsG0480021923.01.T01:intron 30.0%
!! GTGATGCTATTATTGTTTTG+AGG + Chr4:66028756-66028775 None:intergenic 30.0%
!! TAAATGGAGATTAGCCTAAA+TGG + Chr4:66032334-66032353 None:intergenic 30.0%
!!! AATGGATTAGAACTTTTGAC+CGG + Chr4:66030233-66030252 None:intergenic 30.0%
!!! GGCAAACCAAGTTTTAATTA+AGG + Chr4:66028855-66028874 None:intergenic 30.0%
!!! TGTTTTTTCATCTTGCAGTT+CGG + Chr4:66031099-66031118 None:intergenic 30.0%
AAAACTATGAAGGGTCAAAG+TGG - Chr4:66033115-66033134 MsG0480021923.01.T01:intron 35.0%
AAACTATGAAGGGTCAAAGT+GGG - Chr4:66033116-66033135 MsG0480021923.01.T01:intron 35.0%
AACTCAAGGAATCAAGTCTT+TGG + Chr4:66032486-66032505 None:intergenic 35.0%
AACTTGGAATTGTTGTAGAC+TGG + Chr4:66032887-66032906 None:intergenic 35.0%
AATAATAGCATCACAGTGGA+TGG - Chr4:66028762-66028781 MsG0480021923.01.T01:three_prime_UTR 35.0%
AATGGCAAAAACAGTACTAG+TGG - Chr4:66033151-66033170 MsG0480021923.01.T01:intron 35.0%
ACAAATGCGGTTTATTGGAT+TGG - Chr4:66031163-66031182 MsG0480021923.01.T01:intron 35.0%
ACATGTGGTCATCATATCAA+AGG - Chr4:66028816-66028835 MsG0480021923.01.T01:CDS 35.0%
ACCAAACAAATGCGGTTTAT+TGG - Chr4:66031158-66031177 MsG0480021923.01.T01:intron 35.0%
AGTGATGAAGAAGAGAAAGA+AGG - Chr4:66033004-66033023 MsG0480021923.01.T01:intron 35.0%
ATGGGGGATAAATTCTAAAC+CGG - Chr4:66032045-66032064 MsG0480021923.01.T01:intron 35.0%
ATGTATTCGTGTCAGATACA+TGG + Chr4:66030896-66030915 None:intergenic 35.0%
ATTAGAACTTGTCTCACATG+TGG - Chr4:66028801-66028820 MsG0480021923.01.T01:CDS 35.0%
CACTTGAATCAAGGATTGAA+TGG + Chr4:66033277-66033296 None:intergenic 35.0%
CATCAAAAGAAAAGGAATGG+AGG - Chr4:66030508-66030527 MsG0480021923.01.T01:intron 35.0%
CATCAAAAGAAAAGGAATGG+AGG + Chr4:66030527-66030508 None:intergenic 35.0%
CATTCAATCCTTGATTCAAG+TGG - Chr4:66033275-66033294 MsG0480021923.01.T01:CDS 35.0%
CTGCAAGATGAAAAAACATG+CGG - Chr4:66031101-66031120 MsG0480021923.01.T01:intron 35.0%
CTTAGCTTCAAATATACCCA+TGG - Chr4:66032153-66032172 MsG0480021923.01.T01:intron 35.0%
GAAAGCCAGAGAAAACAAAT+TGG - Chr4:66032957-66032976 MsG0480021923.01.T01:intron 35.0%
GAATACATCCAAACCAAATG+CGG - Chr4:66031798-66031817 MsG0480021923.01.T01:intron 35.0%
GCATTAAAATAGCAATGCCA+TGG + Chr4:66032173-66032192 None:intergenic 35.0%
GGAACAGAAACTAAAAGAGA+AGG + Chr4:66028621-66028640 None:intergenic 35.0%
GGATGAACTCATCAATTAGA+GGG + Chr4:66029305-66029324 None:intergenic 35.0%
TAAATGGAGCTTAGCCTAAA+TGG - Chr4:66032410-66032429 MsG0480021923.01.T01:intron 35.0%
TAGTTAGGATGGAAAATGGT+GGG - Chr4:66033451-66033470 MsG0480021923.01.T01:five_prime_UTR 35.0%
TATATACCTGGTAGTTTCTC+TGG + Chr4:66029366-66029385 None:intergenic 35.0%
TCCAATAAACCGCATTTGTT+TGG + Chr4:66031162-66031181 None:intergenic 35.0%
TCTTGCATCCAAACCTTAAA+TGG + Chr4:66032359-66032378 None:intergenic 35.0%
TGATGCATCAGTATCATCTT+GGG - Chr4:66032981-66033000 MsG0480021923.01.T01:intron 35.0%
TGTTAATTCACTACTGCAGA+TGG + Chr4:66032696-66032715 None:intergenic 35.0%
TTCAACAAGTAGTTGCATGA+GGG - Chr4:66028485-66028504 MsG0480021923.01.T01:three_prime_UTR 35.0%
TTCATGTTGCTGAAGTCTAA+AGG + Chr4:66030011-66030030 None:intergenic 35.0%
TTGAATAACATGGTCAGAAG+TGG - Chr4:66029981-66030000 MsG0480021923.01.T01:intron 35.0%
! AAATGCGGTTTTTGTGGTTT+CGG - Chr4:66031813-66031832 MsG0480021923.01.T01:intron 35.0%
! ACTTTTGACCGGTTGTTTAA+AGG + Chr4:66030222-66030241 None:intergenic 35.0%
! AGATTATGGTGTTTTCCACA+AGG + Chr4:66030364-66030383 None:intergenic 35.0%
! AGCTTTTGGCACAAGTTTTA+AGG + Chr4:66030484-66030503 None:intergenic 35.0%
! CATTTTCTCCTTCAAGAGTA+GGG + Chr4:66029326-66029345 None:intergenic 35.0%
! CATTTTTGTAGGAGAAGATG+TGG - Chr4:66030062-66030081 MsG0480021923.01.T01:intron 35.0%
! CTTTTGACCGGTTGTTTAAA+GGG + Chr4:66030221-66030240 None:intergenic 35.0%
! GAGGGAGTAGTTTTTAACAA+TGG + Chr4:66030251-66030270 None:intergenic 35.0%
! GATTATGGTGTTTTCCACAA+GGG + Chr4:66030363-66030382 None:intergenic 35.0%
! TTTACCTGTTTTATGCCAAC+GGG + Chr4:66032858-66032877 None:intergenic 35.0%
! TTTGCGGTTTTTCTATGGAT+TGG - Chr4:66031851-66031870 MsG0480021923.01.T01:intron 35.0%
! TTTGTGGTTTCGGTTTGAAT+TGG - Chr4:66031823-66031842 MsG0480021923.01.T01:intron 35.0%
! TTTTCTCAAGTTTACCCTTG+TGG - Chr4:66030346-66030365 MsG0480021923.01.T01:intron 35.0%
!! ATCACCCAATTTGTTTTCTC+TGG + Chr4:66032965-66032984 None:intergenic 35.0%
!! GCATTTGGTTTGGATGTATT+CGG + Chr4:66031799-66031818 None:intergenic 35.0%
!! GTTTATTGGATTGGTTTGTG+CGG - Chr4:66031172-66031191 MsG0480021923.01.T01:intron 35.0%
!! TCAAGAGATTCTGGAACATT+TGG - Chr4:66029245-66029264 MsG0480021923.01.T01:CDS 35.0%
!! TTGATATAAAAGGGTGTTCG+CGG - Chr4:66031039-66031058 MsG0480021923.01.T01:intron 35.0%
!! TTTATTGGATTGGTTTGTGC+GGG - Chr4:66031173-66031192 MsG0480021923.01.T01:intron 35.0%
!!! AGGATGCTTTTTAAGGTTGA+TGG - Chr4:66032609-66032628 MsG0480021923.01.T01:intron 35.0%
!!! ATCACTCATTTTGAAGTGTC+GGG - Chr4:66030914-66030933 MsG0480021923.01.T01:intron 35.0%
!!! CATCACTCATTTTGAAGTGT+CGG - Chr4:66030913-66030932 MsG0480021923.01.T01:intron 35.0%
!!! GGTTTTTCTATGGATTGGTT+CGG - Chr4:66031856-66031875 MsG0480021923.01.T01:intron 35.0%
!!! TTTTATGTTGCGGTTTGGTT+CGG - Chr4:66031707-66031726 MsG0480021923.01.T01:intron 35.0%
AACATTTGGAAGCAAAGGTG+AGG - Chr4:66029259-66029278 MsG0480021923.01.T01:CDS 40.0%
AGAACGGTTGAGTTAAGAGA+AGG + Chr4:66028591-66028610 None:intergenic 40.0%
AGTGGGAATGAGGTAATCAA+TGG - Chr4:66033133-66033152 MsG0480021923.01.T01:intron 40.0%
AGTTAGGATGGAAAATGGTG+GGG - Chr4:66033452-66033471 MsG0480021923.01.T01:five_prime_UTR 40.0%
ATCATATATGTGCCCATGCT+TGG - Chr4:66033638-66033657 MsG0480021923.01.T01:five_prime_UTR 40.0%
CAAAACCAAGTTTCAGTGAC+CGG + Chr4:66032067-66032086 None:intergenic 40.0%
CACAAAAACCGCATTTGGTT+TGG + Chr4:66031809-66031828 None:intergenic 40.0%
CCATCCTAACTAGAGCATAT+AGG + Chr4:66033443-66033462 None:intergenic 40.0%
CCTACTCTTGAAGGAGAAAA+TGG - Chr4:66029324-66029343 MsG0480021923.01.T01:CDS 40.0%
CCTATATGCTCTAGTTAGGA+TGG - Chr4:66033440-66033459 MsG0480021923.01.T01:five_prime_UTR 40.0%
CTAGTTAGGATGGAAAATGG+TGG - Chr4:66033450-66033469 MsG0480021923.01.T01:five_prime_UTR 40.0%
CTCATGCACCAAAAAAGTGA+AGG - Chr4:66028440-66028459 MsG0480021923.01.T01:three_prime_UTR 40.0%
CTTCAACAAGTAGTTGCATG+AGG - Chr4:66028484-66028503 MsG0480021923.01.T01:three_prime_UTR 40.0%
GAAACCACAAAAACCGCATT+TGG + Chr4:66031814-66031833 None:intergenic 40.0%
GATCAGACCCTTTAAACAAC+CGG - Chr4:66030211-66030230 MsG0480021923.01.T01:intron 40.0%
GCTCTAGTTAGGATGGAAAA+TGG - Chr4:66033447-66033466 MsG0480021923.01.T01:five_prime_UTR 40.0%
GGGATGAACTCATCAATTAG+AGG + Chr4:66029306-66029325 None:intergenic 40.0%
GGTGGAATTAATGACTTACC+TGG - Chr4:66029189-66029208 MsG0480021923.01.T01:CDS 40.0%
GTGATGCATCAGTATCATCT+TGG - Chr4:66032980-66032999 MsG0480021923.01.T01:intron 40.0%
TCAACAAGTAGTTGCATGAG+GGG - Chr4:66028486-66028505 MsG0480021923.01.T01:three_prime_UTR 40.0%
TCAATCCTTGATTCAAGTGG+TGG - Chr4:66033278-66033297 MsG0480021923.01.T01:CDS 40.0%
TCATATCAAAGGCCAAGATC+AGG - Chr4:66028827-66028846 MsG0480021923.01.T01:CDS 40.0%
TCCAGAATCTCTTGATCTGT+AGG + Chr4:66029240-66029259 None:intergenic 40.0%
TCCTACAGATCAAGAGATTC+TGG - Chr4:66029236-66029255 MsG0480021923.01.T01:CDS 40.0%
TCTTCAGGAGTAAGCAAAGA+TGG - Chr4:66032734-66032753 MsG0480021923.01.T01:CDS 40.0%
TGATAACAAATCTGGGTGGA+GGG + Chr4:66032111-66032130 None:intergenic 40.0%
TTGATCAAGGGAACCAACAT+AGG - Chr4:66033212-66033231 MsG0480021923.01.T01:intron 40.0%
! CAAACCAAATGCGGTTTTTG+TGG - Chr4:66031807-66031826 MsG0480021923.01.T01:intron 40.0%
! CCATTTTCTCCTTCAAGAGT+AGG + Chr4:66029327-66029346 None:intergenic 40.0%
! GAAAATGGTGGGGAAGAATT+AGG - Chr4:66033462-66033481 MsG0480021923.01.T01:five_prime_UTR 40.0%
! GCAACTACTTGTTGAAGTGT+GGG + Chr4:66028481-66028500 None:intergenic 40.0%
! GGTTTCGGTTTGAATTGGTT+CGG - Chr4:66031828-66031847 MsG0480021923.01.T01:intron 40.0%
! TCTGGAACATTTGGAAGCAA+AGG - Chr4:66029254-66029273 MsG0480021923.01.T01:CDS 40.0%
! TGAACTTAGCTCAGTTGGTA+GGG + Chr4:66031004-66031023 None:intergenic 40.0%
! TGCAACTACTTGTTGAAGTG+TGG + Chr4:66028482-66028501 None:intergenic 40.0%
! TTGATAACAAATCTGGGTGG+AGG + Chr4:66032112-66032131 None:intergenic 40.0%
!! AAATAAAAGTGTCCTCTCGC+TGG + Chr4:66033570-66033589 None:intergenic 40.0%
!! GATCTTTAGAGCATAGACGT+CGG + Chr4:66031938-66031957 None:intergenic 40.0%
!! GTTTGAATTGGTTCGGTTTG+CGG - Chr4:66031835-66031854 MsG0480021923.01.T01:intron 40.0%
!! TACAACCGTATGGTTTGGTT+CGG + Chr4:66031765-66031784 None:intergenic 40.0%
!! TTCGGTTTGCGGTTTTTCTA+TGG - Chr4:66031846-66031865 MsG0480021923.01.T01:intron 40.0%
!!! TCACTCATTTTGAAGTGTCG+GGG - Chr4:66030915-66030934 MsG0480021923.01.T01:intron 40.0%
AAGAGAAGGGACAGAGAGAA+CGG + Chr4:66028607-66028626 None:intergenic 45.0%
ACCAACTGAGCTAAGTTCAC+AGG - Chr4:66031005-66031024 MsG0480021923.01.T01:intron 45.0%
ACTCATCCAGAGAAACTACC+AGG - Chr4:66029357-66029376 MsG0480021923.01.T01:intron 45.0%
AGGTTTGGATGCAAGACATG+TGG - Chr4:66032363-66032382 MsG0480021923.01.T01:intron 45.0%
AGTTCGGGTATGCTCCATTT+AGG - Chr4:66032317-66032336 MsG0480021923.01.T01:intron 45.0%
AGTTCGGGTATGCTCCATTT+AGG + Chr4:66032336-66032317 None:intergenic 45.0%
CAAACTCAACCAAGACAGTG+TGG - Chr4:66033055-66033074 MsG0480021923.01.T01:intron 45.0%
CAGTGAAATTCTCACTGGAG+AGG - Chr4:66031641-66031660 MsG0480021923.01.T01:intron 45.0%
CATCACAGTGGATGGAAGAA+AGG - Chr4:66028770-66028789 MsG0480021923.01.T01:three_prime_UTR 45.0%
CCAACTGAGCTAAGTTCACA+GGG - Chr4:66031006-66031025 MsG0480021923.01.T01:intron 45.0%
CTAAACCGGTCACTGAAACT+TGG - Chr4:66032059-66032078 MsG0480021923.01.T01:intron 45.0%
CTCTCCAGTGAGAATTTCAC+TGG + Chr4:66031643-66031662 None:intergenic 45.0%
CTTGTCCACCACTTGAATCA+AGG + Chr4:66033286-66033305 None:intergenic 45.0%
GAAACCCGTTGGCATAAAAC+AGG - Chr4:66032851-66032870 MsG0480021923.01.T01:CDS 45.0%
GAACATATGTCACCTAGACC+AGG + Chr4:66031675-66031694 None:intergenic 45.0%
GAATTACCACCACACTGTCT+TGG + Chr4:66033067-66033086 None:intergenic 45.0%
GAGTTCATCCCTACTCTTGA+AGG - Chr4:66029315-66029334 MsG0480021923.01.T01:CDS 45.0%
GCAAACCGAACCAAACCATA+CGG - Chr4:66031757-66031776 MsG0480021923.01.T01:intron 45.0%
GCATCCAGTGAAATTCTCAC+TGG - Chr4:66031636-66031655 MsG0480021923.01.T01:intron 45.0%
GTGAACTTAGCTCAGTTGGT+AGG + Chr4:66031005-66031024 None:intergenic 45.0%
TGATCCGCCATTTCTTTCAC+CGG - Chr4:66032759-66032778 MsG0480021923.01.T01:CDS 45.0%
TGTTCCTGTTGTGTATGCCT+TGG + Chr4:66032789-66032808 None:intergenic 45.0%
TTGAATGGAGAGGATCTCAC+TGG + Chr4:66031551-66031570 None:intergenic 45.0%
! AAAGGTACATTCGGATCACG+AGG - Chr4:66032820-66032839 MsG0480021923.01.T01:CDS 45.0%
! ATGAATATTGGTCTAGGGGG+AGG - Chr4:66031500-66031519 MsG0480021923.01.T01:intron 45.0%
! CTACTTGTTGAAGTGTGGGA+AGG + Chr4:66028477-66028496 None:intergenic 45.0%
! GAGCATTGCTAGACCTATGT+TGG + Chr4:66033228-66033247 None:intergenic 45.0%
! GTCGGGGGTTCATAGATTTT+TGG - Chr4:66030931-66030950 MsG0480021923.01.T01:intron 45.0%
! TGAATATTGGTCTAGGGGGA+GGG - Chr4:66031501-66031520 MsG0480021923.01.T01:intron 45.0%
!! CGGTTTGGTTCGGTTTAGTT+CGG - Chr4:66031717-66031736 MsG0480021923.01.T01:intron 45.0%
!! GGGGGTTCATAGATTTTTGG+TGG - Chr4:66030934-66030953 MsG0480021923.01.T01:intron 45.0%
!! GTATGGTTTGGTTCGGTTTG+CGG + Chr4:66031758-66031777 None:intergenic 45.0%
!! TGCGGTTTAGTTCGGTTTTG+AGG - Chr4:66031062-66031081 MsG0480021923.01.T01:intron 45.0%
!!! CACTCATTTTGAAGTGTCGG+GGG - Chr4:66030916-66030935 MsG0480021923.01.T01:intron 45.0%
!! AAACATTTATAATTATTAAA+AGG - Chr4:66031584-66031603 MsG0480021923.01.T01:intron 5.0%
!! AACATTTATAATTATTAAAA+GGG - Chr4:66031585-66031604 MsG0480021923.01.T01:intron 5.0%
!!! TAATTTATAAATGATATTTT+AGG + Chr4:66030654-66030673 None:intergenic 5.0%
ACTCAACCAAGACAGTGTGG+TGG - Chr4:66033058-66033077 MsG0480021923.01.T01:intron 50.0%
ATGGCCGGTGAAAGAAATGG+CGG + Chr4:66032766-66032785 None:intergenic 50.0%
ATGTCACCTAGACCAGGACT+TGG + Chr4:66031669-66031688 None:intergenic 50.0%
CCATCCAAGGCATACACAAC+AGG - Chr4:66032782-66032801 MsG0480021923.01.T01:CDS 50.0%
CCCTGTGAACTTAGCTCAGT+TGG + Chr4:66031009-66031028 None:intergenic 50.0%
CCTGTTGTGTATGCCTTGGA+TGG + Chr4:66032785-66032804 None:intergenic 50.0%
GAAGGGTCAAAGTGGGAATG+AGG - Chr4:66033123-66033142 MsG0480021923.01.T01:intron 50.0%
GGATCAAACTTCACTCCAGC+TGG + Chr4:66029219-66029238 None:intergenic 50.0%
GTACATTCGGATCACGAGGA+CGG - Chr4:66032824-66032843 MsG0480021923.01.T01:CDS 50.0%
TGGATGGCCGGTGAAAGAAA+TGG + Chr4:66032769-66032788 None:intergenic 50.0%
TTGTGTATGCCTTGGATGGC+CGG + Chr4:66032781-66032800 None:intergenic 50.0%
TTGTTGAAGACTCCAGCGAG+AGG - Chr4:66033555-66033574 MsG0480021923.01.T01:five_prime_UTR 50.0%
TTTCTTTCACCGGCCATCCA+AGG - Chr4:66032769-66032788 MsG0480021923.01.T01:CDS 50.0%
! GAATATTGGTCTAGGGGGAG+GGG - Chr4:66031502-66031521 MsG0480021923.01.T01:intron 50.0%
!! ATAAAAGGGTGTTCGCGGTG+CGG - Chr4:66031044-66031063 MsG0480021923.01.T01:intron 50.0%
!! GGTGAAAGAAATGGCGGATC+AGG + Chr4:66032760-66032779 None:intergenic 50.0%
ACTGGAGAGGATCCAAGTCC+TGG - Chr4:66031654-66031673 MsG0480021923.01.T01:intron 55.0%
AGGGGATTCTCTCCTGTGAC+TGG - Chr4:66031520-66031539 MsG0480021923.01.T01:intron 55.0%
GACTTACCTGGATTGCCAGC+TGG - Chr4:66029201-66029220 MsG0480021923.01.T01:CDS 55.0%
GAGGATCCAAGTCCTGGTCT+AGG - Chr4:66031660-66031679 MsG0480021923.01.T01:intron 55.0%
GTTCGCGGTGCGGTTTAGTT+CGG - Chr4:66031054-66031073 MsG0480021923.01.T01:intron 55.0%
TCACTGGACTCTCCAGTCAC+AGG + Chr4:66031535-66031554 None:intergenic 55.0%
TTCACTCCAGCTGGCAATCC+AGG + Chr4:66029210-66029229 None:intergenic 55.0%
AGGACGGAAGCGAAACCCGT+TGG - Chr4:66032840-66032859 MsG0480021923.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 66028390 66033699 66028390 ID=MsG0480021923.01;Name=MsG0480021923.01
Chr4 mRNA 66028390 66033699 66028390 ID=MsG0480021923.01.T01;Parent=MsG0480021923.01;Name=MsG0480021923.01.T01;_AED=0.49;_eAED=0.49;_QI=345|1|1|1|1|1|3|411|284
Chr4 exon 66028390 66029348 66028390 ID=MsG0480021923.01.T01:exon:20809;Parent=MsG0480021923.01.T01
Chr4 exon 66032711 66032903 66032711 ID=MsG0480021923.01.T01:exon:20808;Parent=MsG0480021923.01.T01
Chr4 exon 66033241 66033699 66033241 ID=MsG0480021923.01.T01:exon:20807;Parent=MsG0480021923.01.T01
Chr4 five_prime_UTR 66033355 66033699 66033355 ID=MsG0480021923.01.T01:five_prime_utr;Parent=MsG0480021923.01.T01
Chr4 CDS 66033241 66033354 66033241 ID=MsG0480021923.01.T01:cds;Parent=MsG0480021923.01.T01
Chr4 CDS 66032711 66032903 66032711 ID=MsG0480021923.01.T01:cds;Parent=MsG0480021923.01.T01
Chr4 CDS 66028801 66029348 66028801 ID=MsG0480021923.01.T01:cds;Parent=MsG0480021923.01.T01
Chr4 three_prime_UTR 66028390 66028800 66028390 ID=MsG0480021923.01.T01:three_prime_utr;Parent=MsG0480021923.01.T01
Gene Sequence

>MsG0480021923.01.T01

ATGACTCAGTGCAGTGACCCTCAAAACAATAATAGCATCACAGTGGATGGAAGAAAGGACAGCTTAATTAGAACTTGTCTCACATGTGGTCATCATATCAAAGGCCAAGATCAGGGTGGTGGAATTAATGACTTACCTGGATTGCCAGCTGGAGTGAAGTTTGATCCTACAGATCAAGAGATTCTGGAACATTTGGAAGCAAAGGTGAGGTCTGATATTCATAAGCTTCACCCTCTAATTGATGAGTTCATCCCTACTCTTGAAGGAGAAAATGGAATCTGCTATACTCATCCAGAGAAACTACCAGGAGTAAGCAAAGATGGCCTGATCCGCCATTTCTTTCACCGGCCATCCAAGGCATACACAACAGGAACAAGAAAAAGAAGAAAGGTACATTCGGATCACGAGGACGGAAGCGAAACCCGTTGGCATAAAACAGGTAAAACTAGACCAGTCTACAACAATTCCAAGTTGAAAGGTTACAAAAAAATCCTTGTACTTTACACAAACTATGGAAAACAAAGAAAGCCAGAGAAAACAAATTGGGTGATGCATCAGTATCATCTTGGGAGTGATGAAGAAGAGAAAGAAGGAGTGTTAGTTGTGTCCAAAGTTTTCTATCAAACTCAACCAAGACAGTGTGGTGGTAATTCATTGATTATGAAAGACTCTATTCTTGGAAAAACTATGAAGGGTCAAAGTGGGAATGAGGTAATCAATGGCAAAAACAGTACTAGTGGATCATTTGTTGAATATTATCAATCAAATTTCATATCATTTGATCAAGGGAACCAACATAGGTCTAGCAATGCTCAAGTAATTTCACATTTTGAAAGTGTTCCATTCAATCCTTGA
Protein sequence

>MsG0480021923.01.T01

MTQCSDPQNNNSITVDGRKDSLIRTCLTCGHHIKGQDQGGGINDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDHEDGSETRWHKTGKTRPVYNNSKLKGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGSDEEEKEGVLVVSKVFYQTQPRQCGGNSLIMKDSILGKTMKGQSGNEVINGKNSTSGSFVEYYQSNFISFDQGNQHRSSNAQVISHFESVPFNP*